Citrus Sinensis ID: 028672

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQP
ccccccccccccccccccccEEccccccccccccccccccccccccEEEccccEEEEEEEcccccccccccEEEEEEEEEEccccEEEEccccccccEEEEccccccEEccHHHHHHccccccEEEEEEcccccccccccccccccccccEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccEEccccccccccccccEEEEEccHHHHcccccccccccccccEEEEEccccEEEEEEEcccccccccccEEEEEEEEEEccccEEEcccccccccEEEEEccccccHHHHHHHHHHHccccEEEEEEccHHcccccccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccc
meevdgepksqapgevgeseivtedaafvrgeppqdgdgppkvdsEVEVLHEKVTKQIIkeghgqkpskystCFLHYRAWAestrhkfddtwleqqplEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGwelgygkegsfsfpnvspmaDLVYEVVLIGfdetkegkarsdMTVEERIGAADRRKMDGNALFKEEKLEEAMQQP
meevdgepksqapgevgeSEIVTEDAAFVrgeppqdgdgppkVDSEVEVLHEKVTKqiikeghgqkpskystCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDetkegkarsdmtveerigaadrrkmdgnaLFKEEKLEEAMQQP
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQP
********************************************************************KYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD*******************************************
************************************************VLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE************IG*ADRRKMDGNALFKEEKLEEAMQ**
*****************ESEIVTEDAAFVRG**************EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEE*********
**************EVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQ**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query205 2.2.26 [Sep-21-2011]
Q9LDC0 365 Peptidyl-prolyl cis-trans yes no 0.912 0.512 0.812 4e-87
P0C1J7 385 FK506-binding protein 5 O N/A no 0.678 0.361 0.342 1e-12
Q9FJL3 578 Peptidyl-prolyl cis-trans no no 0.751 0.266 0.325 9e-08
Q91XW8 327 Peptidyl-prolyl cis-trans yes no 0.697 0.437 0.265 2e-07
Q43207 559 70 kDa peptidyl-prolyl is N/A no 0.726 0.266 0.305 3e-07
O75344 327 Peptidyl-prolyl cis-trans yes no 0.697 0.437 0.246 5e-07
Q9VL78 439 FK506-binding protein 59 yes no 0.643 0.300 0.303 8e-07
Q54Y27 366 FK506-binding protein 6 O yes no 0.692 0.387 0.24 1e-06
A6QQ71 326 Peptidyl-prolyl cis-trans yes no 0.697 0.438 0.246 2e-06
Q38931 551 Peptidyl-prolyl cis-trans no no 0.785 0.292 0.296 3e-06
>sp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1 Back     alignment and function desciption
 Score =  320 bits (820), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 152/187 (81%), Positives = 171/187 (91%)

Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
           ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct: 15  ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74

Query: 78  RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
           RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134

Query: 138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
           EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct: 135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194

Query: 198 LEEAMQQ 204
           LEEAMQQ
Sbjct: 195 LEEAMQQ 201
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Modulates the uptake of MRP substrates into the vacuole; reduces metolachlor-GS (MOC-GS) and enhances 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG) uptake. Regulates cell elongation and orientation. Functions as a positive regulator of PGP1-mediated auxin transport. Confers drug modulation of PGP1 efflux activity as interaction with NPA or flavonol quercetin prevents its physical and functional interaction with PGP1. Required for the proper localization of auxin-related ABCB transporters. Plays a role in brassinosteroid (BR) signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|P0C1J7|FKBP5_RHIO9 FK506-binding protein 5 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=FKBP5 PE=3 SV=1 Back     alignment and function description
>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1 Back     alignment and function description
>sp|Q91XW8|FKBP6_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP6 OS=Mus musculus GN=Fkbp6 PE=2 SV=1 Back     alignment and function description
>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1 Back     alignment and function description
>sp|O75344|FKBP6_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP6 OS=Homo sapiens GN=FKBP6 PE=1 SV=1 Back     alignment and function description
>sp|Q9VL78|FKB59_DROME FK506-binding protein 59 OS=Drosophila melanogaster GN=FKBP59 PE=1 SV=1 Back     alignment and function description
>sp|Q54Y27|FKBP6_DICDI FK506-binding protein 6 OS=Dictyostelium discoideum GN=fkbp6 PE=3 SV=1 Back     alignment and function description
>sp|A6QQ71|FKBP6_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP6 OS=Bos taurus GN=FKBP6 PE=2 SV=1 Back     alignment and function description
>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query205
225450073 365 PREDICTED: 42 kDa peptidyl-prolyl isomer 0.990 0.556 0.833 7e-94
255645857 370 unknown [Glycine max] 0.995 0.551 0.790 7e-90
356531669 370 PREDICTED: 42 kDa peptidyl-prolyl isomer 0.995 0.551 0.790 7e-90
449464000 369 PREDICTED: peptidyl-prolyl cis-trans iso 0.980 0.544 0.802 2e-89
449516701 369 PREDICTED: peptidyl-prolyl cis-trans iso 0.980 0.544 0.798 6e-89
356542700 370 PREDICTED: 42 kDa peptidyl-prolyl isomer 0.995 0.551 0.785 4e-88
224104085 369 predicted protein [Populus trichocarpa] 0.951 0.528 0.805 5e-88
224059618 372 predicted protein [Populus trichocarpa] 0.990 0.545 0.779 2e-87
118138347 338 Chain A, Crystal Structure Of A Multi-Do 0.912 0.553 0.812 6e-86
30686321 365 peptidyl-prolyl isomerase [Arabidopsis t 0.912 0.512 0.812 2e-85
>gi|225450073|ref|XP_002277668.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 2 [Vitis vinifera] gi|225450075|ref|XP_002277645.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 1 [Vitis vinifera] gi|297736282|emb|CBI24920.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 170/204 (83%), Positives = 187/204 (91%), Gaps = 1/204 (0%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           ME+V+ E +SQ P +  E+EIVTE+AAFV GEP QDG GPPKVDSEVEVLHEKVTKQI+K
Sbjct: 1   MEDVE-ELQSQKPDQDDENEIVTENAAFVHGEPLQDGTGPPKVDSEVEVLHEKVTKQIMK 59

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHGQKPSKYSTCFLHYRAW EST+HKF+DTW EQ+P+E+V+GKEKKEMTGLAIGVS+MK
Sbjct: 60  EGHGQKPSKYSTCFLHYRAWTESTQHKFEDTWNEQRPVEIVIGKEKKEMTGLAIGVSNMK 119

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           +GE ALLHVGWELGYGKEGSFSFPNV PMAD++YEV LIGFDETKEGKAR DMTVEERIG
Sbjct: 120 SGERALLHVGWELGYGKEGSFSFPNVPPMADILYEVELIGFDETKEGKARGDMTVEERIG 179

Query: 181 AADRRKMDGNALFKEEKLEEAMQQ 204
           AADRRKMDGN  FKEEKLEEAMQQ
Sbjct: 180 AADRRKMDGNVYFKEEKLEEAMQQ 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255645857|gb|ACU23419.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356531669|ref|XP_003534399.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|449464000|ref|XP_004149717.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516701|ref|XP_004165385.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356542700|ref|XP_003539804.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|224104085|ref|XP_002313312.1| predicted protein [Populus trichocarpa] gi|118485759|gb|ABK94729.1| unknown [Populus trichocarpa] gi|222849720|gb|EEE87267.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224059618|ref|XP_002299936.1| predicted protein [Populus trichocarpa] gi|222847194|gb|EEE84741.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118138347|pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Back     alignment and taxonomy information
>gi|30686321|ref|NP_188801.2| peptidyl-prolyl isomerase [Arabidopsis thaliana] gi|75334844|sp|Q9LDC0.1|FKB42_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase FKBP42; Short=PPIase FKBP42; AltName: Full=42 kDa peptidyl-prolyl isomerase; AltName: Full=FK506-binding protein 42; Short=AtFKBP42; AltName: Full=Immunophilin FKBP42; AltName: Full=Protein TWISTED DWARF 1; AltName: Full=Protein ULTRACURVATA 2; AltName: Full=Rotamase gi|9650631|emb|CAC00654.1| FKBP-like [Arabidopsis thaliana] gi|11994400|dbj|BAB02359.1| unnamed protein product [Arabidopsis thaliana] gi|332643012|gb|AEE76533.1| peptidyl-prolyl isomerase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query205
TAIR|locus:2089890 365 TWD1 "AT3G21640" [Arabidopsis 0.912 0.512 0.812 4.1e-81
UNIPROTKB|Q2QXS0 370 LOC_Os12g05090 "Os12g0145500 p 0.960 0.532 0.690 4e-74
GENEDB_PFALCIPARUM|PFL2275c 304 PfFKBP35 "FK506-binding protei 0.697 0.470 0.339 3.4e-12
UNIPROTKB|Q8I4V8 304 FKBP35 "FK506-binding protein 0.697 0.470 0.339 3.4e-12
UNIPROTKB|Q6K5Q1 682 P0579G08.8 "Putative peptidylp 0.619 0.186 0.311 5.3e-12
UNIPROTKB|Q7RM28 306 PY02360 "FK506-binding protein 0.697 0.467 0.339 1e-11
TAIR|locus:2152561 578 ROF2 "AT5G48570" [Arabidopsis 0.751 0.266 0.325 1.6e-11
ZFIN|ZDB-GENE-050302-4 343 fkbp6 "FK506 binding protein 6 0.721 0.431 0.270 3.9e-10
TAIR|locus:2090265 562 ROF1 "AT3G25230" [Arabidopsis 0.834 0.304 0.291 4.8e-10
UNIPROTKB|Q7F1F2 580 OJ1191_A10.119 "cDNA clone:J03 0.609 0.215 0.305 7e-09
TAIR|locus:2089890 TWD1 "AT3G21640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 152/187 (81%), Positives = 171/187 (91%)

Query:    18 ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
             ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct:    15 ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74

Query:    78 RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
             RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct:    75 RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134

Query:   138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
             EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct:   135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194

Query:   198 LEEAMQQ 204
             LEEAMQQ
Sbjct:   195 LEEAMQQ 201
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IDA
GO:0005528 "FK506 binding" evidence=ISS;IBA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA
GO:0018208 "peptidyl-proline modification" evidence=IBA
GO:0005516 "calmodulin binding" evidence=IDA
GO:0048366 "leaf development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
UNIPROTKB|Q2QXS0 LOC_Os12g05090 "Os12g0145500 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFL2275c PfFKBP35 "FK506-binding protein (FKBP)-type peptidyl-propyl isomerase" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I4V8 FKBP35 "FK506-binding protein (FKBP)-type peptidyl-propyl isomerase" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7RM28 PY02360 "FK506-binding protein" [Plasmodium yoelii yoelii (taxid:73239)] Back     alignment and assigned GO terms
TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050302-4 fkbp6 "FK506 binding protein 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LDC0FKB42_ARATH5, ., 2, ., 1, ., 80.81280.91210.5123yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.10.921
4th Layer5.2.1.80.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
pfam0025494 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t 2e-13
COG0545205 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans 1e-09
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase Back     alignment and domain information 
 Score = 63.0 bits (154), Expect = 2e-13
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 66  KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA 125
           K  K  T  +HY    E     FD +    +P E  LG  +  + G   G+  MK GE  
Sbjct: 4   KAKKGDTVTVHYTGKLEDGT-VFDSSKDRGKPFEFTLGSGQV-IPGWDEGLLGMKVGEKR 61

Query: 126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
            L +  EL YG+EG      + P A LV+EV L+
Sbjct: 62  KLTIPPELAYGEEGLAG-GVIPPNATLVFEVELL 94

Length = 94
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 205
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 100.0
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.97
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 99.96
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.95
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.94
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.94
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.93
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 99.93
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.87
KOG0545 329 consensus Aryl-hydrocarbon receptor-interacting pr 99.74
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.71
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.61
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.56
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.27
TIGR00115 408 tig trigger factor. Trigger factor is a ribosome-a 99.03
PRK01490 435 tig trigger factor; Provisional 98.94
COG0544 441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 98.69
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.7
TIGR00990 615 3a0801s09 mitochondrial precursor proteins import 92.74
KOG0547 606 consensus Translocase of outer mitochondrial membr 89.25
KOG4234 271 consensus TPR repeat-containing protein [General f 86.22
KOG4648 536 consensus Uncharacterized conserved protein, conta 85.98
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-33  Score=220.73  Aligned_cols=128  Identities=29%  Similarity=0.452  Sum_probs=117.1

Q ss_pred             hhhhhhhccccCCCCCCCCCCCCCCcceEEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeEEeccccCCccce
Q 028672           20 EIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLE   99 (205)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gi~~~vl~~G~G~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~   99 (205)
                      ++..+...|+..+.         ....+.++++||+|++++.|.|..|..++.|.+||+|++.| |++|||++.+++|+.
T Consensus        78 ~~~~~~~~f~~~~~---------k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg~p~~  147 (205)
T COG0545          78 ANAAEGKAFLEKNA---------KEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRGQPAE  147 (205)
T ss_pred             HhHHhHHHHHhhhc---------ccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC-CCccccccccCCCce
Confidence            44455566777766         67788999999999999999999999999999999999998 999999999999999


Q ss_pred             eecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEee
Q 028672          100 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (205)
Q Consensus       100 f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~  162 (205)
                      |.||   ++|+||.++|.+|++|++|+++|||++|||.+|.  ++.||||++|+|+|+|++|.
T Consensus       148 f~l~---~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~--~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         148 FPLG---GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV--PGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             eecC---CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC--CCCCCCCCeEEEEEEEEecC
Confidence            9999   5999999999999999999999999999999997  35599999999999999973

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
2if4_A 338 Crystal Structure Of A Multi-Domain Immunophilin Fr 1e-88
2f4e_A180 N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia 5e-76
2dg9_A107 Fk506-Binding Protein Mutant Wl59 Complexed With Ra 9e-07
2ppo_A107 Crystal Structure Of E60a Mutant Of Fkbp12 Length = 2e-06
2dg4_A107 Fk506-Binding Protein Mutant Wf59 Complexed With Ra 3e-06
3b7x_A134 Crystal Structure Of Human Fk506-Binding Protein 6 3e-06
1fkk_A107 Atomic Structure Of Fkbp12, An Immunophilin Binding 4e-06
1rot_A149 Structure Of Fkbp59-I, The N-Terminal Domain Of A 5 6e-06
2ppp_A107 Crystal Structure Of E60q Mutant Of Fkbp12 Length = 8e-06
1bkf_A107 Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX 9e-06
2fap_A107 The Structure Of The Immunophilin-Immunosuppressant 1e-05
1fkb_A107 Atomic Structure Of The Rapamycin Human Immunophili 1e-05
3h9r_B109 Crystal Structure Of The Kinase Domain Of Type I Ac 1e-05
3uqa_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 1e-05
1q1c_A280 Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt 2e-05
1tco_C107 Ternary Complex Of A Calcineurin A Fragment, Calcin 2e-05
1n1a_A140 Crystal Structure Of The N-Terminal Domain Of Human 3e-05
4drj_A144 O-crystal Structure Of The Ppiase Domain Of Fkbp52, 3e-05
2vn1_A129 Crystal Structure Of The Fk506-Binding Domain Of Pl 4e-05
2ofn_A135 Solution Structure Of Fk506-Binding Domain (Fkbd)of 4e-05
3uf8_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 4e-05
1kt1_A 457 Structure Of The Large Fkbp-Like Protein, Fkbp51, I 5e-05
1kt1_A 457 Structure Of The Large Fkbp-Like Protein, Fkbp51, I 1e-04
1eym_A107 Fk506 Binding Protein Mutant, Homodimeric Complex L 5e-05
1qz2_A 336 Crystal Structure Of Fkbp52 C-Terminal Domain Compl 5e-05
4ggq_C209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 5e-05
3vaw_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 5e-05
2lgo_A130 Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol 6e-05
1bl4_A107 Fkbp Mutant F36v Complexed With Remodeled Synthetic 6e-05
3o5d_A264 Crystal Structure Of A Fragment Of Fkbp51 Comprisin 7e-05
2ki3_A126 Structural And Biochemical Characterization Of Fk50 7e-05
1kt0_A 457 Structure Of The Large Fkbp-like Protein, Fkbp51, I 8e-05
4drh_A144 Co-crystal Structure Of The Ppiase Domain Of Fkbp51 1e-04
3o5e_A144 Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144 1e-04
2ke0_A117 Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso 1e-04
4dz3_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 1e-04
3o5g_A128 Fk1 Domain Of Fkbp51, Crystal Form I Length = 128 1e-04
3o5l_A128 Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le 2e-04
2y78_A133 Crystal Structure Of Bpss1823, A Mip-Like Chaperone 2e-04
1r9h_A135 Structural Genomics Of C.Elegans: Fkbp-Type Peptidy 3e-04
3uqb_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 4e-04
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338 Back     alignment and structure 
Iteration: 1

 Score =  322 bits (825), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 152/187 (81%), Positives = 171/187 (91%)
Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
           ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct: 15  ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74
Query: 78  RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
           RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
           EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct: 135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194
Query: 198 LEEAMQQ 204
           LEEAMQQ
Sbjct: 195 LEEAMQQ 201
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180 Back     alignment and structure
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107 Back     alignment and structure
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107 Back     alignment and structure
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107 Back     alignment and structure
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134 Back     alignment and structure
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107 Back     alignment and structure
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149 Back     alignment and structure
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107 Back     alignment and structure
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107 Back     alignment and structure
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107 Back     alignment and structure
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107 Back     alignment and structure
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109 Back     alignment and structure
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280 Back     alignment and structure
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107 Back     alignment and structure
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140 Back     alignment and structure
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144 Back     alignment and structure
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129 Back     alignment and structure
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135 Back     alignment and structure
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 Back     alignment and structure
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 Back     alignment and structure
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107 Back     alignment and structure
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336 Back     alignment and structure
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209 Back     alignment and structure
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130 Back     alignment and structure
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107 Back     alignment and structure
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264 Back     alignment and structure
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126 Back     alignment and structure
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 Back     alignment and structure
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144 Back     alignment and structure
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144 Back     alignment and structure
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117 Back     alignment and structure
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128 Back     alignment and structure
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128 Back     alignment and structure
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133 Back     alignment and structure
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135 Back     alignment and structure
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 2e-56
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 2e-50
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 7e-28
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 8e-19
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 9e-19
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 1e-16
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 2e-14
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 3e-14
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 2e-13
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 1e-07
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 5e-14
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 7e-14
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 5e-13
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 2e-12
2ppn_A107 FK506-binding protein 1A; high resolution protein 3e-12
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 7e-12
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 1e-10
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 1e-11
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 1e-11
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 3e-11
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 3e-11
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 6e-11
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 1e-10
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 8e-10
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 1e-09
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 4e-09
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 8e-09
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 2e-08
1jvw_A167 Macrophage infectivity potentiator; chagas disease 2e-08
1fd9_A213 Protein (macrophage infectivity potentiator prote; 2e-08
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 2e-07
2fbn_A 198 70 kDa peptidylprolyl isomerase, putative; sulfur 7e-07
3rkv_A 162 Putative peptidylprolyl isomerase; structural geno 3e-05
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180 Back     alignment and structure
 Score =  175 bits (445), Expect = 2e-56
 Identities = 135/183 (73%), Positives = 155/183 (84%), Gaps = 3/183 (1%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           M+E     + Q      ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIK
Sbjct: 1   MDE---SLEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIK 57

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHG KPSKYSTCFLHYRAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK
Sbjct: 58  EGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK 117

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           +GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIG
Sbjct: 118 SGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG 177

Query: 181 AAD 183
           AAD
Sbjct: 178 AAD 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119 Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135 Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129 Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113 Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128 Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102 Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144 Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224 Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133 Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167 Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213 Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219 Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query205
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 100.0
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 100.0
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.96
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 99.95
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.95
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.95
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 99.95
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.95
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.95
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.95
1fd9_A213 Protein (macrophage infectivity potentiator prote; 99.95
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.95
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.95
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.94
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 99.94
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.94
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 99.94
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.94
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.94
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 99.94
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.94
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.94
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.93
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.91
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.91
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.9
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.89
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.88
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.86
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.86
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.75
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.73
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.73
3prb_A231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.72
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.7
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.69
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.68
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.68
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.6
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.54
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 99.46
1t11_A 392 Trigger factor, TF; helix-turn-helix, four-helix-b 99.3
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 98.13
2fbn_A 198 70 kDa peptidylprolyl isomerase, putative; sulfur 87.73
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=2.6e-36  Score=239.21  Aligned_cols=179  Identities=75%  Similarity=1.185  Sum_probs=121.6

Q ss_pred             CCccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCcceEEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEE
Q 028672            1 MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAW   80 (205)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gi~~~vl~~G~G~~p~~gd~V~v~y~~~   80 (205)
                      |+|+++.   |....++++++..+++++....|..+...||+....+..+++||+|++|++|+|..|..||.|+|||+++
T Consensus         1 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G~~~~~Gd~V~v~Y~g~   77 (180)
T 2f4e_A            1 MDESLEH---QTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAW   77 (180)
T ss_dssp             ------------------------------------CCSCCCCCSCCEEEETTEEEEEEECCBSCCBCTTCEEEEEEEEE
T ss_pred             ChhHhhh---hhccCCccchhhhhhccccccCCCCcccCCcccCCCcEECCCceEEEEEeCCCCCCCCCCCEEEEEEEEE
Confidence            5555544   4466667799999999999999999999999998999999999999999999999999999999999999


Q ss_pred             EcCCCeEEeccccCCccceeecCCc-ccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEE
Q 028672           81 AESTRHKFDDTWLEQQPLEMVLGKE-KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI  159 (205)
Q Consensus        81 ~~~~G~~~~st~~~~~p~~f~lg~~-~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~  159 (205)
                      +.++|++|++++..+.|+.|.+|.+ . +|+||+++|.+|++|++++|+|||+++||..+.+.++.||+|++|+|+|+|+
T Consensus        78 l~~dG~~fdss~~~~~p~~f~lG~g~~-vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~  156 (180)
T 2f4e_A           78 TKNSQHKFEDTWHEQQPIELVLGKEKK-ELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI  156 (180)
T ss_dssp             ETTTCCEEEETTTTTCCEEEETTSCCG-GGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEE
T ss_pred             ECCCCcEEeccCccCCCEEEEeCCCCc-hhHHHHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEE
Confidence            9866999999988888999999988 6 9999999999999999999999999999999863335799999999999999


Q ss_pred             EeeeCCCCCcCCCCCHHHHHHHHH
Q 028672          160 GFDETKEGKARSDMTVEERIGAAD  183 (205)
Q Consensus       160 ~v~~~~~~~~~~~~~~ee~~~~a~  183 (205)
                      +|..+.+.+..|.|+.+|++++|.
T Consensus       157 ~v~~~~e~~~~~~mt~eErl~~A~  180 (180)
T 2f4e_A          157 GFDETKEGKARSDMTVEERIGAAD  180 (180)
T ss_dssp             EESCBCCC----------------
T ss_pred             EEecCccccccccCCHHHHHhhcC
Confidence            999888766689999999999873
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 205
d1pbka_116 d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 5e-12
d1u79a_125 d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha 2e-11
d1q1ca2117 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H 7e-11
d1r9ha_118 d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd 8e-11
d1q6ha_210 d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 1e-10
d1kt1a3115 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M 4e-10
d1yata_113 d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas 2e-09
d1q1ca1120 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu 6e-09
d2ppna1107 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12) 1e-08
d1kt1a2111 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo 4e-08
d1fd9a_204 d.26.1.1 (A:) Macrophage infectivity potentiator p 2e-07
d2fbna1 153 a.118.8.1 (A:22-174) Putative 70 kda peptidylproly 4e-04
d1p5qa1 170 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d 0.001
d1kt1a1 168 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M 0.002
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 5e-12
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 53  KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAE------STRHKFDDTWLEQQPLEMVLGKE 105
           K TK ++K+G     P K       Y    +      +            +PL   +   
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKV-GV 60

Query: 106 KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
            K + G    + +M  GE A L +  E  YGK+G      + P A L +EV L+  D
Sbjct: 61  GKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQ-PDAKIPPNAKLTFEVELVDID 116
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125 Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118 Back     information, alignment and structure
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210 Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115 Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113 Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111 Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204 Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query205
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 99.97
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 99.97
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.97
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 99.97
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 99.96
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 99.96
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.96
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 99.96
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 99.95
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.93
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.92
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 99.68
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.58
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 99.07
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 98.95
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=3.8e-31  Score=211.49  Aligned_cols=125  Identities=23%  Similarity=0.339  Sum_probs=113.9

Q ss_pred             hhhccccCCCCCCCCCCCCCCcceEEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecC
Q 028672           24 EDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLG  103 (205)
Q Consensus        24 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gi~~~vl~~G~G~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg  103 (205)
                      ....|+..+.         ....+..+++||+|+++++|+|..|..||.|.|||++++.| |++|++++.++.|+.|.+|
T Consensus        79 ~~~~fl~~~~---------~~~~v~~~~sGl~y~v~~~G~G~~p~~~d~v~v~y~g~l~d-g~~f~~s~~~~~p~~~~~~  148 (204)
T d1fd9a_          79 KGEAFLTENK---------NKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLID-GTVFDSTEKTGKPATFQVS  148 (204)
T ss_dssp             HHHHHHHHHH---------HSTTEEECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHCSCEEEEGG
T ss_pred             HHHHHHHhcc---------cCCceEEecCccEEEEeecCCCcccCCCCEEEEEEEEEECC-CCEecccccCCCCceecCC
Confidence            3455666655         44577889999999999999999999999999999999998 9999999988899999988


Q ss_pred             CcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEeee
Q 028672          104 KEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (205)
Q Consensus       104 ~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~~  163 (205)
                         ++|+||+++|.+|++|++++|+|||++|||..|.  ++.||||++|+|+|+|++|.+
T Consensus       149 ---~~i~G~~e~l~~m~~G~~~~~~iP~~laYG~~g~--~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         149 ---QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSV--GGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             ---GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCC--SSSCCTTCCEEEEEEEEEEEC
T ss_pred             ---ccchhHHHHhcCCCCCCEEEEEEChHHCcCCCCC--CCCcCcCCcEEEEEEEEEEEc
Confidence               6999999999999999999999999999999998  467999999999999999986
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure