Citrus Sinensis ID: 028695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEcccccHcHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccHcccccHHHHHHHHcc
Coil and Loop (DISEMBL)
maashtssssthhQILQSKYDVFLsfrgedtrnnftDNLHTALIRNgfiafkddetldrgNEISSELSKAIEESNVSIVILSknyasspwcLDELAKIVECGNKRKDRKVFAVFygvdpadvrkqkgedfERKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLfsgdvsplafykhthvtsleisssnffqn
Flexible Loop (DISEMBL)
maashtssssthhqiLQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFygvdpadvrkqkgedferkVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVtsleisssnffqn
Low Complexity Region (SEG)
MAAshtssssthhQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Disordered region (IsUnstruct)
**************ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDET****************ESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLE*********
Disordered Region (DISOPRED)
******************KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQK******KVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEIS*******
Disordered Region (DISEMBL)
**************ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Disordered Region (DISPRO)
***************LQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.629	0.112	0.482	8e-29
O82500	1095	Putative disease resistan	no	no	0.653	0.122	0.448	4e-28
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.643	0.101	0.431	1e-22
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.692	0.401	0.343	1e-13
Q9SYC9	571	Vesicle-associated protei	no	no	0.751	0.269	0.329	8e-13
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.6	0.299	0.330	4e-10
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.697	0.364	0.339	2e-09
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.575	0.062	0.274	0.0004
Q9FH83	1288	Probable WRKY transcripti	no	no	0.419	0.066	0.340	0.0009

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  126 bits (317), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 88/143 (61%), Gaps = 14/143 (9%)

Query: 20  YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
           YDVFLSFRGEDTR  FT +L+  L   G   F+DD+ L+ G  I  EL KAIEES  +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG------EDFERK 133
           + S+NYA+S WCL+EL KI+EC  + K + V  +FY VDP+ VR QK       E+ E K
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFK-QTVIPIFYDVDPSHVRNQKESFAKAFEEHETK 130

Query: 134 -------VLKWRAALTTVASLAG 149
                  + +WR AL   A+L G
Sbjct: 131 YKDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 88/147 (59%), Gaps = 13/147 (8%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           +YDVF SFRGED RNNF  +L       G + F+DD  + R + I  EL  AI ES +S+
Sbjct: 10  RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDH-IKRSHTIGHELRAAIRESKISV 68

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE---------- 128
           V+ S+NYASS WCLDEL +I++C  + +  KV  VFY VDP+D+RKQ G+          
Sbjct: 69  VLFSENYASSSWCLDELIEIMKC-KEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLETCC 127

Query: 129 -DFERKVLKWRAALTTVASLAGWHLQD 154
              E +   WR ALT  A++ G H Q+
Sbjct: 128 GKTEERQHNWRRALTDAANILGDHPQN 154

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 14/146 (9%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           +YDVF SFRGED R++F  +L   L R   I F DDE ++R   I  EL  AI+ES ++I
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDE-IERSRSIGPELLSAIKESRIAI 68

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE---------- 128
           VI SKNYASS WCL+EL +I +C     ++ V  +F+ VD ++V+KQ GE          
Sbjct: 69  VIFSKNYASSTWCLNELVEIHKCYTNL-NQMVIPIFFHVDASEVKKQTGEFGKVFEETCK 127

Query: 129 -DFERKVLKWRAALTTVASLAGWHLQ 153
              E +   W+ AL  VA +AG+ L+
Sbjct: 128 AKSEDEKQSWKQALAAVAVMAGYDLR 153

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 27/169 (15%)

Query: 2   AASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKD-DETLDRG 60
           A+S    + T  Q       VF++FRG+D RN F   L  A+       F D DE +  G
Sbjct: 3   ASSSVRPTPTGPQ-------VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVV--G 53

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            ++ + L   I+ES V++VI SK+Y SS WCLDELA+I +C N +       +FY + P+
Sbjct: 54  TDLVN-LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCIN-QGGLNAIPIFYKLAPS 111

Query: 121 DVRKQKG--------------EDFERKVLKWRAALTTVASLAGWHLQDR 155
            V + KG               D ER   KW+ AL ++  L G  L ++
Sbjct: 112 SVLELKGGFGDTFRVLKEKYKNDPER-TQKWQEALESIPKLKGLRLAEK 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 16/170 (9%)

Query: 4   SHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEI 63
           S+ +SS+  H I   +Y VF++FRG++ RN+F   L  A+       F D+  L RG  +
Sbjct: 342 SNAASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVEL-RGTNL 400

Query: 64  SSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVR 123
           +  L + IEES V++ I S+ Y  S WCLDEL K+ E   + K   V  VFY ++    +
Sbjct: 401 NY-LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGK-LVVVPVFYRLNATACK 458

Query: 124 KQKG------EDFE-------RKVLKWRAALTTVASLAGWHLQDRFFPLI 160
           +  G       + E        ++ KW+ AL++V S  G     R + LI
Sbjct: 459 RFMGAFGDNLRNLEWEYRSEPERIQKWKEALSSVFSNIGLTSDIRRYNLI 508

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 16/139 (11%)

Query: 22  VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVIL 81
           VF++FRG+D R  F   L  AL +     F D++  +RG  + S L   I ES +++VI 
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQE-ERGKYLIS-LFDTIGESKIALVIF 81

Query: 82  SKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVD---PADVRKQKGEDF-------- 130
           S+ Y  S WC+DEL KI E  ++ +   +  +FY +D     D+  + G++F        
Sbjct: 82  SEGYCESHWCMDELVKIKEYMDQNR-LIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQ 140

Query: 131 --ERKVLKWRAALTTVASL 147
              +K+ KW  AL +V  L
Sbjct: 141 PEPKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 22/165 (13%)

Query: 7   SSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSE 66
           +SSS+  +   +   VF+ FRG D R +F   L  AL R   I    DE    G+E+++ 
Sbjct: 2   ASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPAL-REANINVFIDENEFLGSEMANL 60

Query: 67  LSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRK---VFAVFYGVDPADVR 123
           L++ IEES +++VI S ++  S  CL+ELAKI E    RKD+    V  +FY V P+ V+
Sbjct: 61  LTR-IEESELALVIFSVDFTRSHRCLNELAKIKE----RKDQGRLIVIPIFYKVKPSAVK 115

Query: 124 KQKG---------EDFERKVL----KWRAALTTVASLAGWHLQDR 155
             +G         E   R +L    KW+ AL ++    G  L ++
Sbjct: 116 FLEGKFGDNFRALERNNRHMLPITQKWKEALESIPGSIGMPLAEQ 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 24/142 (16%)

Query: 20  YDVFLSFRGEDTRN-NFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           YDV + +   D  N +F  +L  +L R G   +      ++ NE+      A+ +  V I
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY------EKFNEVD-----ALPKCRVLI 716

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERKVL--- 135
           ++L+  Y  S      L  I+E     +DR V+ +FY + P D      +++ER  L   
Sbjct: 717 IVLTSTYVPS-----NLLNILE-HQHTEDRVVYPIFYRLSPYDFVCNS-KNYERFYLQDE 769

Query: 136 --KWRAALTTVASLAGWHLQDR 155
             KW+AAL  +  + G+ L D+
Sbjct: 770 PKKWQAALKEITQMPGYTLTDK 791

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 43.5 bits (101), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 29  EDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASS 88
           E+ R +F  +L  AL R G      D  +D    +  E    IE++ VS+++L  N   S
Sbjct: 17  EEVRYSFVSHLSEALRRKGINNVVVDVDIDD--LLFKESQAKIEKAGVSVMVLPGNCDPS 74

Query: 89  PWCLDELAKIVECGNKRKDRKVFAVFYG 116
              LD+ AK++EC    KD+ V +V YG
Sbjct: 75  EVWLDKFAKVLECQRNNKDQAVVSVLYG 102

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
359493273	1233	PREDICTED: TMV resistance protein N-like	0.663	0.110	0.563	1e-39
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.663	0.109	0.563	2e-39
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.751	0.128	0.505	6e-39
147845097	826	hypothetical protein VITISV_009816 [Viti	0.804	0.199	0.497	1e-38
105922482	1121	TIR-NBS-LRR type disease resistance prot	0.721	0.132	0.505	3e-38
359493295	577	PREDICTED: TMV resistance protein N-like	0.839	0.298	0.469	3e-38
224130518	1121	tir-nbs-lrr resistance protein [Populus	0.721	0.132	0.505	3e-38
225460020	1156	PREDICTED: TMV resistance protein N-like	0.697	0.123	0.533	4e-37
82542035	735	TIR-NBS disease resistance-like protein	0.848	0.236	0.424	4e-37
224113731	183	predicted protein [Populus trichocarpa]	0.741	0.830	0.493	4e-37

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 103/149 (69%), Gaps = 13/149 (8%)

Query: 20  YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
           YDVFLSFRGEDTR +FTD+L+ AL+  G   F+DDE L+RG EI+ EL KAIEES +S+V
Sbjct: 17  YDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEIAPELLKAIEESRISVV 76

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQK----------GED 129
           + SKNYA S WC+DEL KI+EC  K K + V  VFY VDP  VRKQ           GED
Sbjct: 77  VFSKNYARSGWCMDELVKIIEC-MKAKGQTVLPVFYDVDPTHVRKQTGSFMEAFASHGED 135

Query: 130 FE--RKVLKWRAALTTVASLAGWHLQDRF 156
            E   +  +WRAALT  A+L+GWHLQ+ +
Sbjct: 136 TEVIERAKRWRAALTQAANLSGWHLQNGY 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 103/149 (69%), Gaps = 13/149 (8%)

Query: 20  YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
           YDVFLSFRGEDTR +FTD+L+ AL+  G   F+DDE L+RG EI+ EL KAIEES +S+V
Sbjct: 17  YDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEIAPELLKAIEESRISVV 76

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQK----------GED 129
           + SKNYA S WC+DEL KI+EC  K K + V  VFY VDP  VRKQ           GED
Sbjct: 77  VFSKNYARSGWCMDELVKIIEC-MKAKGQTVLPVFYDVDPTHVRKQTGSFMEAFASHGED 135

Query: 130 FE--RKVLKWRAALTTVASLAGWHLQDRF 156
            E   +  +WRAALT  A+L+GWHLQ+ +
Sbjct: 136 TEVIERAKRWRAALTQAANLSGWHLQNGY 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 119/174 (68%), Gaps = 20/174 (11%)

Query: 1   MAASHTSSSSTHHQILQSK------YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDD 54
           MAA+ +  ++T      ++      Y VFLSFRGEDTR NFT +L++ L R   + FKDD
Sbjct: 1   MAATSSRCNTTSPPFSPTQNNCKWTYHVFLSFRGEDTRKNFTGHLYSGLSRFKLLVFKDD 60

Query: 55  ETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVF 114
           E L++G  I+ EL KAIE+S  S+++LSKNYASS WCLDELAKI+ECG++ K +K+F VF
Sbjct: 61  EKLEKGKVIAPELLKAIEQSMFSVIVLSKNYASSSWCLDELAKIIECGDQ-KGQKIFPVF 119

Query: 115 YGVDPADVRKQKG---EDFER----------KVLKWRAALTTVASLAGWHLQDR 155
           Y V+P+DVRKQ G   +DF +          KV KWRAA+T VA+L+GW  ++R
Sbjct: 120 YDVEPSDVRKQTGSFQDDFAKHEEKYRENIDKVRKWRAAMTQVANLSGWTSKNR 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845097|emb|CAN78476.1| hypothetical protein VITISV_009816 [Vitis vinifera]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 116/183 (63%), Gaps = 18/183 (9%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MA+S TSS          ++DVFLSFRGEDTR NFTD+L++AL   G   F+DDE L+RG
Sbjct: 1   MASSGTSS-------FXXRWDVFLSFRGEDTRXNFTDHLYSALTSRGIHTFRDDEGLERG 53

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EI   L KAIEES VSIV+ SKNYA S WCLDEL KI+E   + K + V  VFY VDP+
Sbjct: 54  GEIQPSLLKAIEESKVSIVVFSKNYAHSQWCLDELYKIME-SRREKGQIVVPVFYHVDPS 112

Query: 121 DVRKQK---GEDFER-------KVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFT 170
           DVRKQ    G+ F R       +VL+WRAALT    L+GWH++  +   I  ++   +  
Sbjct: 113 DVRKQTGSFGKAFARYKKVTKERVLRWRAALTQAGGLSGWHVEHGYESQIIXVIVGRISK 172

Query: 171 LII 173
           ++I
Sbjct: 173 MLI 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922482|gb|ABF81419.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 113/168 (67%), Gaps = 20/168 (11%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MAAS++ +++      + KYDVFLSFRGEDTR +FTD+L+TAL   G I F+DD+ L+RG
Sbjct: 1   MAASYSRTTT------RWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERG 54

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
           NEIS EL +AI++S  S+++ S+NY SS WCL+EL KIVEC  K+  + V  VFY VDP+
Sbjct: 55  NEISRELLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVEC-MKQGRQTVIPVFYDVDPS 113

Query: 121 DVRKQKG-------------EDFERKVLKWRAALTTVASLAGWHLQDR 155
           +VR Q G             +D   KV  WR A+  VA+L+GW LQDR
Sbjct: 114 EVRNQTGRLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493295|ref|XP_002273513.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 122/196 (62%), Gaps = 24/196 (12%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MA+S TSS        Q ++DVFLSFRGEDTR NFTD+L++AL       F+DDE L+RG
Sbjct: 1   MASSGTSS-------FQWRWDVFLSFRGEDTRFNFTDHLYSALTSRYIHTFRDDEGLERG 53

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EI   L KAIE+S +S+V+ S+NYA S WCLDEL KI++C ++ K +KV  +FY VDP+
Sbjct: 54  GEIQPSLLKAIEDSMISVVVFSENYAHSKWCLDELEKIMQC-SREKGQKVLPIFYHVDPS 112

Query: 121 DVRKQK---GEDF----------ERKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNY 167
           DVRKQ    GE F          E +VL+WRAAL+    LAGWH+   +   I  ++   
Sbjct: 113 DVRKQTGSFGEAFARYGRYGNVTEERVLRWRAALSQAGGLAGWHVMHGYESQIIKVIVRR 172

Query: 168 LFTLIIF---CLFSGD 180
           +  ++I     LF GD
Sbjct: 173 ISKMLISRPELLFIGD 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 113/168 (67%), Gaps = 20/168 (11%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MAAS++ +++      + KYDVFLSFRGEDTR +FTD+L+TAL   G I F+DD+ L+RG
Sbjct: 1   MAASYSRTTT------RWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERG 54

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
           NEIS EL +AI++S  S+++ S+NY SS WCL+EL KIVEC  K+  + V  VFY VDP+
Sbjct: 55  NEISRELLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVEC-MKQGRQTVIPVFYDVDPS 113

Query: 121 DVRKQKG-------------EDFERKVLKWRAALTTVASLAGWHLQDR 155
           +VR Q G             +D   KV  WR A+  VA+L+GW LQDR
Sbjct: 114 EVRNQTGRLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460020|ref|XP_002269704.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 111/163 (68%), Gaps = 20/163 (12%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MA+ ++SS+       +  YDVFLSFRGEDTRNNFTD+L+TAL++ G   F+DD+ L RG
Sbjct: 8   MASDYSSSTP------RCTYDVFLSFRGEDTRNNFTDHLYTALVQRGINTFRDDK-LRRG 60

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRK-VFAVFYGVDP 119
            EI+ EL KAIEES  SIV+ SK YA S WCLDELAKI+EC  +R+ R+ V  +FY VDP
Sbjct: 61  EEIAPELLKAIEESRSSIVVFSKTYAHSRWCLDELAKIMEC--RREYRQIVLPIFYHVDP 118

Query: 120 ADVRKQKG----------EDFERKVLKWRAALTTVASLAGWHL 152
           ADVRKQ G          E+++ K  +WR ALT    +AGW +
Sbjct: 119 ADVRKQTGSFGEAFTSYEENWKNKAQRWREALTEAGYIAGWPI 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82542035|gb|ABB82025.1| TIR-NBS disease resistance-like protein [Populus trichocarpa]

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 120/205 (58%), Gaps = 31/205 (15%)

Query: 17  QSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
           +  YDVFLSFRGEDTR  FTD+L++AL++ G  AF+DD+ L RG EIS  L +AI+ES +
Sbjct: 49  EGAYDVFLSFRGEDTRKTFTDHLYSALVQAGIRAFRDDDDLPRGEEISDHLLRAIQESKI 108

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG--------- 127
           SIV+ SK YASS WCL+EL +I+EC N++  + V  +FY +DP+DVRKQ G         
Sbjct: 109 SIVVFSKGYASSRWCLNELVEILECKNRKTGQIVLPIFYHIDPSDVRKQNGSFAEAFANN 168

Query: 128 -EDFERKVLK-WRAALTTVASLAGWHL-------QDRFFPLIYLLLFNYLFTLIIFCLFS 178
            E FE K++K WR AL    +L+GW+L       + +F   I   + N L          
Sbjct: 169 EERFEEKLVKEWRKALEEAGNLSGWNLNHMANGHEAKFIKEIIKDVLNKL---------- 218

Query: 179 GDVSPLAFYKHTHVTSLEISSSNFF 203
               P  FY   H+  ++  + N F
Sbjct: 219 ---DPKYFYVPEHLVGMDRLAHNIF 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113731|ref|XP_002332505.1| predicted protein [Populus trichocarpa] gi|222833238|gb|EEE71715.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 110/164 (67%), Gaps = 12/164 (7%)

Query: 2   AASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGN 61
           AA+ T   S+  + + + YDVFLSFRGEDTR  FTD+L+TAL++ G   F+DD+ L RG 
Sbjct: 1   AAAMTEPESSRSRPVGA-YDVFLSFRGEDTRKTFTDHLYTALVQAGIHTFRDDDELPRGE 59

Query: 62  EISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPAD 121
           EIS  L +AI+ES +SIV+ SK YASS WCL+EL +I++C N++  + V  +FY +DP+D
Sbjct: 60  EISDHLLRAIQESKISIVVFSKGYASSRWCLNELVEILKCKNRKTGQIVLPIFYDIDPSD 119

Query: 122 VRKQKG----------EDFERKVLK-WRAALTTVASLAGWHLQD 154
           VRKQ G          E FE K++K WR AL     L+GW+L D
Sbjct: 120 VRKQTGSFAEPFDKHEERFEEKLVKEWRKALEEAGKLSGWNLND 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2032602	1163	AT1G72860 [Arabidopsis thalian	0.634	0.111	0.528	9.7e-31
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.639	0.476	0.5	3e-30
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.639	0.353	0.493	6.2e-30
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.639	0.344	0.482	3.1e-28
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.658	0.356	0.473	6.4e-28
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.639	0.744	0.475	1e-27
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.629	0.093	0.479	3.3e-27
TAIR|locus:2013875	429	AT1G66090 [Arabidopsis thalian	0.658	0.314	0.466	3.5e-27
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.663	0.114	0.455	1.5e-26
TAIR|locus:2026649	966	AT1G63730 [Arabidopsis thalian	0.639	0.135	0.472	2.6e-26

TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 9.7e-31, P = 9.7e-31
 Identities = 74/140 (52%), Positives = 94/140 (67%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             KYDVFLSFRGEDTR N   +LH  L+  G + FKDD+ L+ G+ IS E+S+AI+ S  ++
Sbjct:    11 KYDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEEISRAIQNSTYAL 70

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE-DFER----- 132
             VILS+NYASS WCLDEL  +++   K K  KV  +FYGVDP+ VR Q G   F++     
Sbjct:    71 VILSENYASSSWCLDELRMVMDLHLKNKI-KVVPIFYGVDPSHVRHQTGSFTFDKYQDSK 129

Query:   133 ---KVLKWRAALTTVASLAG 149
                KV  WR ALT +ASLAG
Sbjct:   130 MPNKVTTWREALTQIASLAG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 72/144 (50%), Positives = 94/144 (65%)

Query:    18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
             +KYDVFLSFRG DTR NF   L+  L+R     FKDD+ L+ G  IS EL +AIEES  +
Sbjct:     7 TKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDFER-- 132
             +V++S NYA+SPWCLDEL KI++  NK     V  +FYGVDP  +R+Q G   E F++  
Sbjct:    67 VVVVSVNYAASPWCLDELVKIMDFENKGSIT-VMPIFYGVDPCHLRRQIGDVAEQFKKHE 125

Query:   133 -------KVLKWRAALTTVASLAG 149
                    KV  WR ALT++AS++G
Sbjct:   126 AREEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 71/144 (49%), Positives = 93/144 (64%)

Query:    18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
             +KYDVFLSFRG DTR NF   L+   +R     FKDD+ L+ G  IS EL +AIEES  +
Sbjct:     7 TKYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDFER-- 132
             +V++S NYA+SPWCLDEL KI++  NK     V  +FYGVDP  +R+Q G   E F++  
Sbjct:    67 VVVVSVNYAASPWCLDELVKIMDFENKGSIT-VMPIFYGVDPCHLRRQIGDVAEQFKKHE 125

Query:   133 -------KVLKWRAALTTVASLAG 149
                    KV  WR ALT++AS++G
Sbjct:   126 AREEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 69/143 (48%), Positives = 89/143 (62%)

Query:    18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
             +KYDVFLSFRG DTR NF   L+  L+R     FKDD+ L+ G  ISSEL + IE S  +
Sbjct:     7 TKYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDFER-- 132
             +V++S+ YA+S WCLDEL  I++   K+    V  +FYGV+P  VR Q G   E F++  
Sbjct:    67 VVVVSETYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHG 125

Query:   133 ------KVLKWRAALTTVASLAG 149
                   KVLKWR ALT  A L+G
Sbjct:   126 SREDHEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 71/150 (47%), Positives = 93/150 (62%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             K+DVFLSFRG DTR +F   L+  LIR     FKDD+ L  G  I+ EL +AIE S  ++
Sbjct:    10 KFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAV 69

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE---DFER--- 132
             V++S NYA+S WCL+EL KI++  N     KV  +FYGVDP  VR+Q GE    F++   
Sbjct:    70 VVVSVNYAASRWCLEELVKIMDFENMGS-LKVMPIFYGVDPCHVRRQIGEVAEQFKKHEG 128

Query:   133 -----KVLKWRAALTTVASLAG---WHLQD 154
                  KVL WR ALT +AS++G   W  +D
Sbjct:   129 REDHEKVLSWRQALTNLASISGDCSWKWED 158

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 68/143 (47%), Positives = 88/143 (61%)

Query:    18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
             +KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ L+ G   S EL   IE S  +
Sbjct:     7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDFER-- 132
             +V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P  VR Q G   E F++  
Sbjct:    67 VVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHA 125

Query:   133 ------KVLKWRAALTTVASLAG 149
                   KVLKWR ALT  A L+G
Sbjct:   126 SREDPEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 3.3e-27, P = 3.3e-27
 Identities = 70/146 (47%), Positives = 97/146 (66%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             KYDVFLSFRG DTR+NF D+L+ AL ++    F+D+E ++RG+EISS L   +E+S  S+
Sbjct:    13 KYDVFLSFRGADTRDNFGDHLYKAL-KDKVRVFRDNEGMERGDEISSSLKAGMEDSAASV 71

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRK-DRKVFAVFYGVDPADVRKQKG---EDFER-- 132
             +++S+NY+ S WCLDELA +  C  K   DR++  +FY VDP+ VRKQ     +DFE   
Sbjct:    72 IVISRNYSGSRWCLDELAML--CKMKSSLDRRILPIFYHVDPSHVRKQSDHIKKDFEEHQ 129

Query:   133 --------KVLKWRAALTTVASLAGW 150
                     KV +WR ALT V +LAG+
Sbjct:   130 VRFSEEKEKVQEWREALTLVGNLAGY 155

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2013875 AT1G66090 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 69/148 (46%), Positives = 88/148 (59%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             +Y  F SF G D RN F  +L      NG   F DD+ ++R   ++  L++AI ES + I
Sbjct:    25 RYMTFTSFHGPDVRNTFLSHLRKQFNTNGITMF-DDQRMERSQTLAPTLTQAIRESKIYI 83

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE---DFE---- 131
             V+LSKNYASS WCLDEL +I+ C  KR  R V  +FYGV+P+DVRKQ GE    F     
Sbjct:    84 VLLSKNYASSSWCLDELLEILNCKEKRGQR-VMTIFYGVNPSDVRKQTGEFGIAFNETCA 142

Query:   132 RKV----LKWRAALTTVASLAGWHLQDR 155
             RK      KW  ALT V ++ G H+QDR
Sbjct:   143 RKTEEERRKWSHALTCVGNITGVHVQDR 170

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 67/147 (45%), Positives = 90/147 (61%)

Query:    20 YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
             YDVF+SFRG D R NF  +L+ +L R G   F DD  L RG  IS EL  AIE S + IV
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    80 ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDFER---- 132
             +L+K+YASS WCLDEL  I++         VF +F  VDP+D+R Q+G   + F +    
Sbjct:    77 VLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKNS 136

Query:   133 ----KVLKWRAALTTVASLAGWHLQDR 155
                 K+  WR ALT VA+++GW +++R
Sbjct:   137 HPLNKLKDWREALTKVANISGWDIKNR 163

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2026649 AT1G63730 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
 Identities = 68/144 (47%), Positives = 86/144 (59%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             +Y VF SF G D R     +L    I NG   F DD+ ++RG  IS EL++ I ES +SI
Sbjct:    12 RYRVFTSFHGPDVRKTVLSHLRKQFICNGITMF-DDQRIERGQTISPELTRGIRESRISI 70

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE-------DFE 131
             V+LSKNYASS WCLDEL +I++C  +   + V  VFYGVDP+DVRKQ GE        + 
Sbjct:    71 VVLSKNYASSSWCLDELLEILKC-KEDIGQIVMTVFYGVDPSDVRKQTGEFGIRFSETWA 129

Query:   132 RKV----LKWRAALTTVASLAGWH 151
             RK      KW  AL  V ++AG H
Sbjct:   130 RKTEEEKQKWSQALNDVGNIAGEH 153

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam01582	135	pfam01582, TIR, TIR domain	2e-34
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-34
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-33
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	1e-11
pfam13676	102	pfam13676, TIR_2, TIR domain	1e-10
pfam08937	122	pfam08937, DUF1863, MTH538 TIR-like domain (DUF186	5e-04

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  118 bits (298), Expect = 2e-34
 Identities = 54/135 (40%), Positives = 71/135 (52%), Gaps = 14/135 (10%)

Query: 22  VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVIL 81
           VF+SF G+D R+ F  +L   L   G     DD     G  I   L +AIE+S  +IVI 
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 82  SKNYASSPWCLDELAKIVECGNK-RKDRKVFAVFYGVDPADVRKQKGE------------ 128
           S NYASS WCLDEL +IV+C  +    + +  +FY VDP+DVR Q G+            
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 129 -DFERKVLKWRAALT 142
            D E K+  W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  127 bits (321), Expect = 4e-34
 Identities = 70/163 (42%), Positives = 96/163 (58%), Gaps = 19/163 (11%)

Query: 2   AASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGN 61
            AS +SSS          YDVF SF GED R  F  +    L R   IAFKD+E ++R  
Sbjct: 1   MASSSSSSRNW------VYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNE-IERSQ 53

Query: 62  EISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPAD 121
            +  EL +AI +S +++V+ SKNYASS WCL+EL +IV C  +   + V  VFYG+DP+ 
Sbjct: 54  SLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRC-KEELGQLVIPVFYGLDPSH 112

Query: 122 VRKQK---GEDFER--------KVLKWRAALTTVASLAGWHLQ 153
           VRKQ    GE FE+        + ++W+ ALT VA++ G+H Q
Sbjct: 113 VRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQ 155

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  115 bits (291), Expect = 3e-33
 Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 15/142 (10%)

Query: 19  KYDVFLSFRG-EDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
           +YDVF+S+ G ED RN F  +L   L   G   F DD     G     E+ +AIE+S ++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIA 58

Query: 78  IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE---DFERKV 134
           IV+LS NYA S WCLDEL   +E   +    +V  +FY V P+DVRKQ G+    F++  
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 135 LK---------WRAALTTVASL 147
           LK         W+ AL  V S 
Sbjct: 119 LKWPEDEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 21  DVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVI 80
           DVF++ RG DT+      L+  L R     F D++ +  G+++  +++ AI    V + +
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 81  LSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVR-KQKGEDFERKVLKWRA 139
            S  Y  S +CL ELA I+E       ++V  +F  V P+ +R    G   + ++ ++  
Sbjct: 88  FSPRYCESYFCLHELALIME-----SKKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNW 142

Query: 140 AL 141
           AL
Sbjct: 143 AL 144

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 22  VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVIL 81
           VF+S+   D    + + L  AL   G   + D + +  G +   E+ +A+  ++V +V+L
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWD-IPPGEDWRDEIEEALRSADVVLVLL 57

Query: 82  SKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADV 122
           S  Y +SPWC  E           + +++  V   ++  ++
Sbjct: 58  SPAYLASPWCRAEWGAA-----LERGKRLIPVR--LEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

>gnl|CDD|220076 pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 23/88 (26%)

Query: 20 YDVFLSFRGEDTRNNFTDNLHTALIRN---------------GFIAFKDDETLDRGNE-- 62
            VF+SF  ED      D      +RN               GF    D E + R N+  
Sbjct: 1  RKVFISFHHED------DVWRYDQLRNLGANEGINGAENIDFGFFDVNDWEPIKRPNDAY 54

Query: 63 ISSELSKAIEESNVSIVILSKNYASSPW 90
          I   +   I+ S+V+IV++ +  AS  W
Sbjct: 55 IKRWIRDQIKGSSVTIVLVGEETASRKW 82

This domain adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein. This domain is similar to the TIR domain. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.92
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.88
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.71
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.95
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.55
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.42
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	96.46
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	90.52
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	84.35
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	83.38

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=2.1e-46  Score=309.97  Aligned_cols=153  Identities=23%  Similarity=0.407  Sum_probs=133.3

Q ss_pred             CCCCCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhH
Q 028695           12 HHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWC   91 (205)
Q Consensus        12 ss~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wC   91 (205)
                      ||++...+|||||||||+|+|++|++||+.+|+++||+||+|+.++.+|+.|.+.|.+||++|+++|+|||++|++|.||
T Consensus        19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            33444568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCeEEEEEeecCccccccc-cCcchHHHHHHHHHHHHHhhcccceeecCC---cchhHHHHhHhh
Q 028695           92 LDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQ-KGEDFERKVLKWRAALTTVASLAGWHLQDR---FFPLIYLLLFNY  167 (205)
Q Consensus        92 l~EL~~i~~~~~~~~~~~ViPIFy~v~PsdVr~q-~g~~f~e~v~~Wr~AL~~v~~~~G~~~~~~---~~~~~~~~~~~~  167 (205)
                      |+||++|++|     ++.||||||+|+|+|||+| .|....+++++||+||++|++++||++..+   ...++..+...+
T Consensus        99 LdEL~~I~e~-----~~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v  173 (187)
T PLN03194         99 LHELALIMES-----KKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAV  173 (187)
T ss_pred             HHHHHHHHHc-----CCEEEEEEecCCHHHhhccccCCCCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHH
Confidence            9999999998     3589999999999999997 443337899999999999999999988643   245554444444


Q ss_pred             Hh
Q 028695          168 LF  169 (205)
Q Consensus       168 ~~  169 (205)
                      ..
T Consensus       174 ~k  175 (187)
T PLN03194        174 IK  175 (187)
T ss_pred             HH
Confidence            33

>PLN03210 Resistant to P

Probab=100.00  E-value=1.4e-44  Score=365.55  Aligned_cols=177  Identities=38%  Similarity=0.651  Sum_probs=154.4

Q ss_pred             CCCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHH
Q 028695           14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLD   93 (205)
Q Consensus        14 ~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~   93 (205)
                      +++.++|||||||||+|+|++|++||+++|.++||.+|+|+ ++++|+.|.+++.+||++|+++|||||++||+|.|||+
T Consensus         7 ~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~   85 (1153)
T PLN03210          7 SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN   85 (1153)
T ss_pred             CCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHH
Confidence            34578999999999999999999999999999999999987 69999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEEEeecCccccccccC---cch--------HHHHHHHHHHHHHhhcccceeecCCc--chhH
Q 028695           94 ELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDF--------ERKVLKWRAALTTVASLAGWHLQDRF--FPLI  160 (205)
Q Consensus        94 EL~~i~~~~~~~~~~~ViPIFy~v~PsdVr~q~g---~~f--------~e~v~~Wr~AL~~v~~~~G~~~~~~~--~~~~  160 (205)
                      ||++|++| +++++++|+||||+|+|+|||+|+|   +.|        .+++++||+||++||+++||++.++-  ..++
T Consensus        86 el~~i~~~-~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i  164 (1153)
T PLN03210         86 ELLEIVRC-KEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMI  164 (1153)
T ss_pred             HHHHHHHh-hhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHH
Confidence            99999999 8889999999999999999999999   334        57899999999999999999998751  2333


Q ss_pred             HHHhHh----------------------hHhhhhhhhhhcCCCCcceeeccCce
Q 028695          161 YLLLFN----------------------YLFTLIIFCLFSGDVSPLAFYKHTHV  192 (205)
Q Consensus       161 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (205)
                      ..+..+                      .......++..+.+++..++|||.|+
T Consensus       165 ~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGi  218 (1153)
T PLN03210        165 EEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGI  218 (1153)
T ss_pred             HHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCC
Confidence            222222                      23334566677888999999999986

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.92  E-value=3.7e-26  Score=180.25  Aligned_cols=121  Identities=36%  Similarity=0.592  Sum_probs=104.2

Q ss_pred             EEEecccccCCcchHHHHHHHHHcC--CeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHHHH
Q 028695           22 VFLSFRGEDTRNNFTDNLHTALIRN--GFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIV   99 (205)
Q Consensus        22 VFISfr~~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~   99 (205)
                      |||||++.+++..|+++|..+|+++  |+++|++++|+.+|..+.+++.++|++||++|+|||++|+.|.||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999444678999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCC-CCeEEEEEeecCccccc-cccC---cc------h------HHHHHHHHHHHH
Q 028695          100 ECGNKRK-DRKVFAVFYGVDPADVR-KQKG---ED------F------ERKVLKWRAALT  142 (205)
Q Consensus       100 ~~~~~~~-~~~ViPIFy~v~PsdVr-~q~g---~~------f------~e~v~~Wr~AL~  142 (205)
                      +++.+.+ ..+|+||||++.+++++ ++.+   .+      +      .++...|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9955533 58999999999999999 6776   11      1      247889998875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.88  E-value=8.4e-23  Score=158.83  Aligned_cols=126  Identities=43%  Similarity=0.723  Sum_probs=102.4

Q ss_pred             eeeEEEeccc-ccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHH
Q 028695           19 KYDVFLSFRG-EDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK   97 (205)
Q Consensus        19 ~yDVFISfr~-~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~   97 (205)
                      .|||||||++ ++..+.|+.+|..+|...|+.+|.|+.. ..|... .+|.++|++|++.|+|+|++|+.|.||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~-~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc-cccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            4999999999 4566889999999999999999999753 333333 399999999999999999999999999999999


Q ss_pred             HHHhcccCCCCeEEEEEeecCccccccccC----------cchHHHH--HHHHHHHHHhhc
Q 028695           98 IVECGNKRKDRKVFAVFYGVDPADVRKQKG----------EDFERKV--LKWRAALTTVAS  146 (205)
Q Consensus        98 i~~~~~~~~~~~ViPIFy~v~PsdVr~q~g----------~~f~e~v--~~Wr~AL~~v~~  146 (205)
                      ++++..+.....||||+++..|.++.++.+          ..|.+..  +.|+.++..+.+
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence            998744446789999999988888888776          1221222  689888877653

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.71  E-value=3.1e-18  Score=127.29  Aligned_cols=87  Identities=34%  Similarity=0.620  Sum_probs=75.6

Q ss_pred             EEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHHHHHh
Q 028695           22 VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVEC  101 (205)
Q Consensus        22 VFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~  101 (205)
                      |||||+++|  ..++..|...|++.|+++|+|. ++.+|+.+.+.+.++|++|++.|+++|++|..|+||..|+..+.+ 
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence            899999999  4699999999999999999997 999999999999999999999999999999999999999999844 


Q ss_pred             cccCCCCeEEEEEee
Q 028695          102 GNKRKDRKVFAVFYG  116 (205)
Q Consensus       102 ~~~~~~~~ViPIFy~  116 (205)
                          .++.|+||..+
T Consensus        77 ----~~~~iipv~~~   87 (102)
T PF13676_consen   77 ----RGKPIIPVRLD   87 (102)
T ss_dssp             ----TSESEEEEECS
T ss_pred             ----CCCEEEEEEEC
Confidence                35699999964

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.95  E-value=1.9e-09  Score=100.77  Aligned_cols=94  Identities=28%  Similarity=0.473  Sum_probs=80.1

Q ss_pred             CCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcC-------
Q 028695           15 ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYAS-------   87 (205)
Q Consensus        15 ~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~-------   87 (205)
                      +.+.+.|||||||.. +.+..++-|...|+-+|++||+|-+.+..|+ +.+.+++.|...+.+|+|++||...       
T Consensus       608 ~~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~n  685 (832)
T KOG3678|consen  608 MLSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN  685 (832)
T ss_pred             cccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence            345689999999876 4577999999999999999999988898887 4678999999999999999999763       


Q ss_pred             -ChhHHHHHHHHHHhcccCCCCeEEEEEe
Q 028695           88 -SPWCLDELAKIVECGNKRKDRKVFAVFY  115 (205)
Q Consensus        88 -S~wCl~EL~~i~~~~~~~~~~~ViPIFy  115 (205)
                       -.|.-+||.-+++|     ++.|||||-
T Consensus       686 CeDWVHKEl~~Afe~-----~KNIiPI~D  709 (832)
T KOG3678|consen  686 CEDWVHKELKCAFEH-----QKNIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHHHh-----cCCeeeeec
Confidence             35777788888888     678999984

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.55  E-value=1.7e-07  Score=73.23  Aligned_cols=91  Identities=23%  Similarity=0.404  Sum_probs=49.3

Q ss_pred             eeEEEecccccCCcchHHHHHHHHHcC-------CeEE----------EEcCCCCCCCccchHHHHHHHHhcCceEEEec
Q 028695           20 YDVFLSFRGEDTRNNFTDNLHTALIRN-------GFIA----------FKDDETLDRGNEISSELSKAIEESNVSIVILS   82 (205)
Q Consensus        20 yDVFISfr~~D~r~~Fv~~L~~aL~~~-------Gi~v----------f~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S   82 (205)
                      |.|||||++.|.. ..+..|...+...       .+..          +.+..+....+.|...|.++|.+|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            6899999999843 3677777777663       1211          12222333445788899999999999999999


Q ss_pred             cCCcCChhHHHHHHHHHHhcccCCCCeEEEEEee
Q 028695           83 KNYASSPWCLDELAKIVECGNKRKDRKVFAVFYG  116 (205)
Q Consensus        83 ~~y~~S~wCl~EL~~i~~~~~~~~~~~ViPIFy~  116 (205)
                      ++-..|+|+..|+..+++.     +..||.|-..
T Consensus        80 ~~T~~s~wV~~EI~~A~~~-----~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKK-----GKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTTT--------EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHHC-----CCCEEEEECC
Confidence            9999999999999998875     7788888654

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.42  E-value=0.00023  Score=56.22  Aligned_cols=65  Identities=20%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             eEEEecccccCC-cchHHHHHHHHHcC-CeEEEEcCCCCCC--CccchHHHHHHHHhcCceEEEeccCC
Q 028695           21 DVFLSFRGEDTR-NNFTDNLHTALIRN-GFIAFKDDETLDR--GNEISSELSKAIEESNVSIVILSKNY   85 (205)
Q Consensus        21 DVFISfr~~D~r-~~Fv~~L~~aL~~~-Gi~vf~D~~dl~~--G~~i~~~i~~aI~~Sri~IvV~S~~y   85 (205)
                      .|||||+..... ...|..|...|++. |+.|.+|.-+...  +.....=+.+++++++..|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            599999885543 36789999999999 9999999766633  55666667888999999999999544

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=96.46  E-value=0.0093  Score=46.91  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=61.4

Q ss_pred             eEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccC-Cc------------C
Q 028695           21 DVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN-YA------------S   87 (205)
Q Consensus        21 DVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~-y~------------~   87 (205)
                      .|||.|. +|.  .....+...|+..|+.+.+-.+....|..+.+.+.++..+++.+|++++|+ ..            -
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899997 553  578889999998888877655567999999999999999999999999995 22            1


Q ss_pred             ChhHHHHHHHHHHh
Q 028695           88 SPWCLDELAKIVEC  101 (205)
Q Consensus        88 S~wCl~EL~~i~~~  101 (205)
                      -...+.|+-..+..
T Consensus        78 R~NVifE~G~f~g~   91 (125)
T PF10137_consen   78 RQNVIFELGLFIGK   91 (125)
T ss_pred             ccceeehhhHHHhh
Confidence            23456788887754

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=90.52  E-value=1  Score=32.26  Aligned_cols=67  Identities=24%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             eEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCC
Q 028695           21 DVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASS   88 (205)
Q Consensus        21 DVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S   88 (205)
                      .||||-.-.|.. .--..|.+.|.+.|.....-+.--..+....+.+++.|++|++.|.++-.+|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            389998777753 3446788888777765443221112355566788999999999999999999754

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=84.35  E-value=1.2  Score=39.47  Aligned_cols=100  Identities=19%  Similarity=0.088  Sum_probs=67.6

Q ss_pred             CCCceeeEEEecccccCCcchHHHHHHHHH--cCCeEEEEcCCC---CCCCccchHHHHHHH--HhcCceEEEeccCCcC
Q 028695           15 ILQSKYDVFLSFRGEDTRNNFTDNLHTALI--RNGFIAFKDDET---LDRGNEISSELSKAI--EESNVSIVILSKNYAS   87 (205)
Q Consensus        15 ~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~--~~Gi~vf~D~~d---l~~G~~i~~~i~~aI--~~Sri~IvV~S~~y~~   87 (205)
                      ...+.||+=+||.|+-  .+.|+....+++  ..-+..|+|-.-   +-+|+ +. .++.-+  +.|++.+|.+..+|..
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~-~~L~~~Y~~rC~~~~VF~~~~Y~~  248 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LV-STLDPGYDIRCVVTTVFNTGSYIC  248 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HH-HhcccccCceEEEEEEEeCCceEE
Confidence            3467899999999986  469999999998  445788888531   23333 22 223222  2588899999999999


Q ss_pred             ChhHHHHHHHHHHhcccCCCCeEEEEEe-ecCccc
Q 028695           88 SPWCLDELAKIVECGNKRKDRKVFAVFY-GVDPAD  121 (205)
Q Consensus        88 S~wCl~EL~~i~~~~~~~~~~~ViPIFy-~v~Psd  121 (205)
                      ..||.-|-..+-+-   ..-....||-| +++-+-
T Consensus       249 K~~c~~E~~~~r~~---~~~d~~~rI~~~~~d~~a  280 (329)
T COG4916         249 KSTCHIEGLEGRLN---PILDTGFRIKYLYADNIA  280 (329)
T ss_pred             eeeeccchhhcccc---ccccccceEEEEecCCcc
Confidence            99999887776332   11235667766 444443

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=83.38  E-value=13  Score=27.78  Aligned_cols=68  Identities=21%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             cchHHHHHHHHHcCCeEEEEcCC-CCC-------CCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHHHHHh
Q 028695           33 NNFTDNLHTALIRNGFIAFKDDE-TLD-------RGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVEC  101 (205)
Q Consensus        33 ~~Fv~~L~~aL~~~Gi~vf~D~~-dl~-------~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~  101 (205)
                      ..+...+.++|++.|+.+|...+ +..       ....|...-.++|++|++.|+++...- -+.=+.-|+..+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            56889999999999999997542 111       122344555678999999999998765 456678899998765

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		4e-29
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		3e-26

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 88/143 (61%), Gaps = 12/143 (8%)
Query: 18  SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
           +KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ L+ G   S EL   IE S  +
Sbjct: 7   TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 78  IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDFER-- 132
           +V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P  VR Q G   E F++  
Sbjct: 67  VVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHA 125
Query: 133 ------KVLKWRAALTTVASLAG 149
                 KVLKWR ALT  A L+G
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 11/145 (7%)
Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           +Y+VFLSFRG DTR  FTD L+ +L R     F+DD+ L +G EI   L +AI++S + +
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG----------E 128
            I+S  YA S WCL ELA+IV    +   R +  +FY VDP+DVR Q G           
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 129 DFERKVLK-WRAALTTVASLAGWHL 152
            F+ + ++ W+ AL  V  L GWH+
Sbjct: 155 KFDGQTIQNWKDALKKVGDLKGWHI 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-79
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	5e-77
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	4e-61
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	2e-14
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	2e-08
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	2e-07
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	1e-04

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  234 bits (600), Expect = 2e-79
 Identities = 64/165 (38%), Positives = 89/165 (53%), Gaps = 15/165 (9%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           ++ S   S S        +Y+VFLSFRG DTR  FTD L+ +L R     F+DD+ L +G
Sbjct: 21  ISDSTNPSGSFP----SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKG 76

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EI   L +AI++S + + I+S  YA S WCL ELA+IV    +   R +  +FY VDP+
Sbjct: 77  KEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPS 136

Query: 121 DVRKQKG---EDFER--------KVLKWRAALTTVASLAGWHLQD 154
           DVR Q G   + F +         +  W+ AL  V  L GWH+  
Sbjct: 137 DVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK 181

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  227 bits (582), Expect = 5e-77
 Identities = 71/157 (45%), Positives = 91/157 (57%), Gaps = 16/157 (10%)

Query: 9   SSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELS 68
           SS       +KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ L+ G   S EL 
Sbjct: 2   SSHT----ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELK 57

Query: 69  KAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG- 127
             IE S  ++V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P  VR Q G 
Sbjct: 58  SPIEVSRFAVVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGV 116

Query: 128 --EDFER--------KVLKWRAALTTVASLAGWHLQD 154
             E F++        KVLKWR ALT  A L+G    D
Sbjct: 117 LAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGD 153

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  186 bits (475), Expect = 4e-61
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 3   ASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNE 62
                 ++         +D+F+S   ED + +F + L   L   G   + DD +L  G+ 
Sbjct: 4   KPTAGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDS 62

Query: 63  ISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADV 122
           +   + K +  S   IV+LS ++    W   EL  + +        ++  +++ V   +V
Sbjct: 63  LRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQL-ESSGRSRILPIWHKVSKDEV 121

Query: 123 RKQKG-----------EDFERKVLKWRAAL 141
                                +++    A+
Sbjct: 122 ASFSPTMADKLAFNTSTKSVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTAL--IRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
            YDV +    ED       +L + L         F        G  I SEL +A+  S+ 
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVD----PADVRKQKGEDFER 132
            +++++  +   PWC  ++ + +       +     +  G+     P ++R     D   
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTE-APGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRG 126

Query: 133 KVLKWRAALTTVAS 146
               +R     V  
Sbjct: 127 PDGGFRQVKEAVMR 140

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALI-----------RNGFIAFKDDETLDRGNEISSEL 67
            YD +LS+   D      +                    G+  F  D  L        ++
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 68  SKAIEESNVSIVILSKNYA-SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQK 126
           ++ +++S   I++++ NY     W + EL   +       + KV  +        +  Q+
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQE 121

Query: 127 GEDF-----ERKVLKWR 138
            E          V+KW 
Sbjct: 122 VEALKHTIKLLTVIKWH 138

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTAL--IRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
           ++  F+S+   D      + L   L       +    +   D G  IS  +   IE+S  
Sbjct: 35  RFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDF-----E 131
           SI +LS N+  + WC  E               +  +     P      +         +
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEK 153

Query: 132 RKVLKWR 138
           +  L+W 
Sbjct: 154 KAYLEWP 160

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 20  YDVFLSFRGEDT---RNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
           YD F+S+   D     N     L        F           G  I   +  +IE+S+ 
Sbjct: 6   YDAFVSYSERDAYWVENLMVQELENF--NPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYG 116
           ++ +LS+N+  S W   EL           +     +   
Sbjct: 64  TVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLE 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.91
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.91
2js7_A	160	Myeloid differentiation primary response protein M	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	97.9
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	96.79
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	85.38

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1.1e-51  Score=345.95  Aligned_cols=150  Identities=41%  Similarity=0.744  Sum_probs=131.5

Q ss_pred             CCCCCCCCCCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCc
Q 028695            7 SSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA   86 (205)
Q Consensus         7 ~~sssss~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~   86 (205)
                      +|+++|++.+.++|||||||||+|+|++|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||+
T Consensus        23 ~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa  102 (204)
T 3ozi_A           23 DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYA  102 (204)
T ss_dssp             -----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred             cCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence            35556778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcccCCCCeEEEEEeecCccccccccC---cch--------HHHHHHHHHHHHHhhcccceeecCC
Q 028695           87 SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDF--------ERKVLKWRAALTTVASLAGWHLQDR  155 (205)
Q Consensus        87 ~S~wCl~EL~~i~~~~~~~~~~~ViPIFy~v~PsdVr~q~g---~~f--------~e~v~~Wr~AL~~v~~~~G~~~~~~  155 (205)
                      +|.||++||++|++|+.+.++++||||||+|+|++||+|+|   +.|        .+++++||.||++||+++||++.++
T Consensus       103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~  182 (204)
T 3ozi_A          103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKN  182 (204)
T ss_dssp             GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred             cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCC
Confidence            99999999999999943357899999999999999999999   333        5789999999999999999999987


Q ss_pred             c
Q 028695          156 F  156 (205)
Q Consensus       156 ~  156 (205)
                      +
T Consensus       183 ~  183 (204)
T 3ozi_A          183 D  183 (204)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-50  Score=332.06  Aligned_cols=157  Identities=45%  Similarity=0.724  Sum_probs=125.5

Q ss_pred             CCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHH
Q 028695           15 ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDE   94 (205)
Q Consensus        15 ~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~E   94 (205)
                      +.+++|||||||||+|+|++|++||+++|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++|
T Consensus         4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E   83 (176)
T 3jrn_A            4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE   83 (176)
T ss_dssp             ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred             CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCeEEEEEeecCccccccccC---cch--------HHHHHHHHHHHHHhhcccceeecCCcchhHHHH
Q 028695           95 LAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDF--------ERKVLKWRAALTTVASLAGWHLQDRFFPLIYLL  163 (205)
Q Consensus        95 L~~i~~~~~~~~~~~ViPIFy~v~PsdVr~q~g---~~f--------~e~v~~Wr~AL~~v~~~~G~~~~~~~~~~~~~~  163 (205)
                      |++|++| .+.++++||||||+|+|++||+|+|   +.|        .+++++||.||++||+++||++.+.        
T Consensus        84 L~~i~~~-~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~~~--------  154 (176)
T 3jrn_A           84 LVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDD--------  154 (176)
T ss_dssp             HHHHHHH-HHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECCSC--------
T ss_pred             HHHHHhh-hccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecCCC--------
Confidence            9999999 7888999999999999999999999   444        5789999999999999999999543        


Q ss_pred             hHhhHhhhhhhhhhcCCCC
Q 028695          164 LFNYLFTLIIFCLFSGDVS  182 (205)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (205)
                        +...+++|+..+++.+.
T Consensus       155 --e~~~i~~Iv~~v~~~l~  171 (176)
T 3jrn_A          155 --DSKLVDKIANEISNKKT  171 (176)
T ss_dssp             --HHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHHHHHHHHHHhc
Confidence              33445555555555443

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=3.6e-35  Score=234.59  Aligned_cols=112  Identities=21%  Similarity=0.378  Sum_probs=105.3

Q ss_pred             CCCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHH
Q 028695           14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLD   93 (205)
Q Consensus        14 ~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~   93 (205)
                      ..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            46788999999999999 66899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEEEeecCccccccccC
Q 028695           94 ELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG  127 (205)
Q Consensus        94 EL~~i~~~~~~~~~~~ViPIFy~v~PsdVr~q~g  127 (205)
                      ||..+++| ...+++.||||||+|+|++|++|.|
T Consensus        94 El~~~~~~-~~~~~~~iiPV~~~v~p~~v~~~~~  126 (154)
T 3h16_A           94 ELDGLFQL-ESSGRSRILPIWHKVSKDEVASFSP  126 (154)
T ss_dssp             HHHHHTCC-CTTSCCCEEEEEESCCTGGGTTTCC
T ss_pred             HHHHHHHH-HhcCCCEEEEEEecCCHHHHhhCCc
Confidence            99999998 7777889999999999999999998

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=3.6e-30  Score=205.05  Aligned_cols=126  Identities=19%  Similarity=0.333  Sum_probs=92.5

Q ss_pred             CCCCCceeeEEEecccccCCcchHHHHHHHHHc--CCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChh
Q 028695           13 HQILQSKYDVFLSFRGEDTRNNFTDNLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW   90 (205)
Q Consensus        13 s~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~--~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~w   90 (205)
                      |+...+.|||||||+++|+  .||.+|+.+|++  .|+++|+|++|+.+|+.+.++|.+||++||++|+|+|+||++|.|
T Consensus         4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w   81 (146)
T 3ub2_A            4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW   81 (146)
T ss_dssp             CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred             CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence            3556789999999999996  489999999998  599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEEEeecCcccc----ccccC-------cch---HHHHHHHHHHH
Q 028695           91 CLDELAKIVECGNKRKDRKVFAVFYGVDPADV----RKQKG-------EDF---ERKVLKWRAAL  141 (205)
Q Consensus        91 Cl~EL~~i~~~~~~~~~~~ViPIFy~v~PsdV----r~q~g-------~~f---~e~v~~Wr~AL  141 (205)
                      |+.|+..++++ ...+..+||||||+|+++++    +....       +.|   .+.|.+|++||
T Consensus        82 c~~El~~al~~-~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           82 CKYQMLQALTE-APGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHT-SSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-HhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence            99999999998 42333478899999986654    44443       344   67889998875

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.92  E-value=7.7e-27  Score=185.91  Aligned_cols=105  Identities=19%  Similarity=0.301  Sum_probs=93.9

Q ss_pred             CCceeeEEEecccccCCcchHHH-HHHHHHcC--CeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHH
Q 028695           16 LQSKYDVFLSFRGEDTRNNFTDN-LHTALIRN--GFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL   92 (205)
Q Consensus        16 ~~~~yDVFISfr~~D~r~~Fv~~-L~~aL~~~--Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl   92 (205)
                      .++.|||||||+++|+  .||.+ |+.+|+++  |+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            3578999999999996  79986 99999986  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCeEEEEEee-cCcccc
Q 028695           93 DELAKIVECGNKRKDRKVFAVFYG-VDPADV  122 (205)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPIFy~-v~PsdV  122 (205)
                      .|+..|+++..+.+++.||||||+ +++.++
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            999999864356677889999995 555444

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.91  E-value=1e-25  Score=181.49  Aligned_cols=102  Identities=20%  Similarity=0.324  Sum_probs=91.6

Q ss_pred             ceeeEEEecccccC---------CcchHHHHHH-HHH-cCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCc
Q 028695           18 SKYDVFLSFRGEDT---------RNNFTDNLHT-ALI-RNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA   86 (205)
Q Consensus        18 ~~yDVFISfr~~D~---------r~~Fv~~L~~-aL~-~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~   86 (205)
                      +.|||||||+++|+         ++.||.+|.. .|+ +.|+++|+|++|+.+|+.+.++|.+||++||.+|+|+|+||+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         4679988776 699 799999999999999999999999999999999999999997


Q ss_pred             -CChhHHHHHHHHHHhcccCCCCeEEEEEeecCc
Q 028695           87 -SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDP  119 (205)
Q Consensus        87 -~S~wCl~EL~~i~~~~~~~~~~~ViPIFy~v~P  119 (205)
                       .|.||+.|+..+++++.+.+++.||||+|+-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             999999999999988557778899999997444

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.91  E-value=7.2e-26  Score=185.74  Aligned_cols=107  Identities=19%  Similarity=0.312  Sum_probs=90.0

Q ss_pred             CCCCceeeEEEecccccCCcchHH-HHHHHHHc--CCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChh
Q 028695           14 QILQSKYDVFLSFRGEDTRNNFTD-NLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW   90 (205)
Q Consensus        14 ~~~~~~yDVFISfr~~D~r~~Fv~-~L~~aL~~--~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~w   90 (205)
                      ...++.|||||||+++|+  .||. +|..+|++  +|+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999995  7997 49999998  899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEEEee-cCcccc
Q 028695           91 CLDELAKIVECGNKRKDRKVFAVFYG-VDPADV  122 (205)
Q Consensus        91 Cl~EL~~i~~~~~~~~~~~ViPIFy~-v~PsdV  122 (205)
                      |+.|+..|+++..+.++++||||||+ +.+.++
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~l  140 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCI  140 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCGGGS
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence            99999999975456677899999996 444444

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.91  E-value=8e-26  Score=182.29  Aligned_cols=104  Identities=16%  Similarity=0.246  Sum_probs=93.3

Q ss_pred             CCCCceeeEEEecccccCCcchHHHHHHHHHcC--CeEEEEcCCCCCCCccchHHHHHHHH-hcCceEEEeccCCcCChh
Q 028695           14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRN--GFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSKNYASSPW   90 (205)
Q Consensus        14 ~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~dl~~G~~i~~~i~~aI~-~Sri~IvV~S~~y~~S~w   90 (205)
                      ...++.|||||||+++|  ..||.+|..+|+++  |+++|+|++|+.+|+.+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            34467899999999999  47999999999985  69999999999999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEEEeecCc
Q 028695           91 CLDELAKIVECGNKRKDRKVFAVFYGVDP  119 (205)
Q Consensus        91 Cl~EL~~i~~~~~~~~~~~ViPIFy~v~P  119 (205)
                      |+.|+..|+++..+.++++||||||+.-+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            99999999988445566799999997543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=2.9e-19  Score=173.17  Aligned_cols=103  Identities=19%  Similarity=0.314  Sum_probs=93.8

Q ss_pred             CCCceeeEEEecccccCCcchH-HHHHHHHHc-----CCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCC
Q 028695           15 ILQSKYDVFLSFRGEDTRNNFT-DNLHTALIR-----NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASS   88 (205)
Q Consensus        15 ~~~~~yDVFISfr~~D~r~~Fv-~~L~~aL~~-----~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S   88 (205)
                      ...+.|||||||+++|.  .|| .+|...|++     .|+++|++++|+.||+.+.++|.+||++||.+|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            35679999999999995  688 789999985     5899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcccCCCCeEEEEEeecCc
Q 028695           89 PWCLDELAKIVECGNKRKDRKVFAVFYGVDP  119 (205)
Q Consensus        89 ~wCl~EL~~i~~~~~~~~~~~ViPIFy~v~P  119 (205)
                      .||..|+..++.+..++++++||||||+..|
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            9999999999987567788899999997444

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=97.90  E-value=8.7e-06  Score=61.66  Aligned_cols=72  Identities=10%  Similarity=0.128  Sum_probs=53.9

Q ss_pred             ceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHH
Q 028695           18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK   97 (205)
Q Consensus        18 ~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~   97 (205)
                      .+|.|||||..+| .   .+.|...|.+.|+. |.|               +.|+.|.+.||+.++....|+||..|+..
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            4799999999998 3   33444444444553 223               56889999999999999999999999988


Q ss_pred             HHHhcccCCCCeEEEEE
Q 028695           98 IVECGNKRKDRKVFAVF  114 (205)
Q Consensus        98 i~~~~~~~~~~~ViPIF  114 (205)
                      +.+.     +..|+-|.
T Consensus        63 A~~~-----gkpIigV~   74 (111)
T 1eiw_A           63 ARKS-----SKPIITVR   74 (111)
T ss_dssp             HTTT-----TCCEEEEC
T ss_pred             HHHc-----CCCEEEEE
Confidence            7654     66777665

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=96.79  E-value=0.0039  Score=51.09  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=71.5

Q ss_pred             chHHHHHHHHHcCCeEEEEcCCCCC----C----CccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHHHH-Hhccc
Q 028695           34 NFTDNLHTALIRNGFIAFKDDETLD----R----GNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIV-ECGNK  104 (205)
Q Consensus        34 ~Fv~~L~~aL~~~Gi~vf~D~~dl~----~----G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~-~~~~~  104 (205)
                      .+...|..--.+..+-.|.|-++..    -    -+.|...|.+.|..|+..|+++|++...|.|...|+..++ ++   
T Consensus        32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~---  108 (189)
T 3hyn_A           32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTK---  108 (189)
T ss_dssp             HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTT---
T ss_pred             HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhc---
Confidence            4556676666666666677765442    2    2357788899999999999999999999999999999998 55   


Q ss_pred             CCCCeEEEEEeecC-ccccccccCcch-HHHHHHHHHHHH
Q 028695          105 RKDRKVFAVFYGVD-PADVRKQKGEDF-ERKVLKWRAALT  142 (205)
Q Consensus       105 ~~~~~ViPIFy~v~-PsdVr~q~g~~f-~e~v~~Wr~AL~  142 (205)
                        +..||-|.-+-+ .+++..-.|. | .+.-..|.+++.
T Consensus       109 --~~PII~Vy~~~~~~~~i~~~~g~-~~~~~~~~wpk~p~  145 (189)
T 3hyn_A          109 --GLPVIVIYPDYDKKSDIVDSNGN-FKKQIKDLWDKLPA  145 (189)
T ss_dssp             --CCCEEEEETTCCSGGGTBCTTSC-BCHHHHHHHHTCHH
T ss_pred             --CCcEEEEECCccccchhhhcccc-chhhHhhcCCcchh
Confidence              778888875533 3344443331 2 233446775443

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=85.38  E-value=4.8  Score=31.58  Aligned_cols=75  Identities=11%  Similarity=0.142  Sum_probs=54.2

Q ss_pred             cchHHHHHHHHHcCCeEEEEcCCC-CCCCccchHHHHHHHHhcCceEEEecc---CCcCChhHHHHHHHHHHhcccCCCC
Q 028695           33 NNFTDNLHTALIRNGFIAFKDDET-LDRGNEISSELSKAIEESNVSIVILSK---NYASSPWCLDELAKIVECGNKRKDR  108 (205)
Q Consensus        33 ~~Fv~~L~~aL~~~Gi~vf~D~~d-l~~G~~i~~~i~~aI~~Sri~IvV~S~---~y~~S~wCl~EL~~i~~~~~~~~~~  108 (205)
                      ..+...+.+.|++.|+.+|.-.++ ......|...-.++|++|++.|.+++|   .+. +.-...|+-.+...     ++
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~-D~GTafEiGyA~Al-----gK   99 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEP-DCGTAFEVGCAAAL-----NK   99 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSC-CHHHHHHHHHHHHT-----TC
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCC-CCcHHHHHHHHHHC-----CC
Confidence            368899999999999998874321 123344555557899999999999985   333 44578899998766     56


Q ss_pred             eEEEE
Q 028695          109 KVFAV  113 (205)
Q Consensus       109 ~ViPI  113 (205)
                      .|+-+
T Consensus       100 PVi~l  104 (161)
T 2f62_A          100 MVLTF  104 (161)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	3e-22
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 3e-22
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 6/125 (4%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           ++  F+S+ G D+     + L   L + G      +     G  I   +   IE+S  SI
Sbjct: 12  QFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFE-----RK 133
            +LS N+  S WC  EL              +  +     P           +     R 
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRT 130

Query: 134 VLKWR 138
            L+W 
Sbjct: 131 YLEWP 135

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 1e-18
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTAL--IRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
            YD F+S+   D      + +   L      F           G  I   +  +IE+S+ 
Sbjct: 5   CYDAFVSYSERDAYW-VENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFER---- 132
           ++ +LS+N+  S WC  EL           +     +           Q+     +    
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNT 123

Query: 133 -KVLKWR 138
              L+W 
Sbjct: 124 KTYLEWP 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.88
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.87
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	88.85
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	88.21
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	80.59

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-23  Score=166.74  Aligned_cols=102  Identities=22%  Similarity=0.357  Sum_probs=93.7

Q ss_pred             CCCCceeeEEEecccccCCcchH-HHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHH
Q 028695           14 QILQSKYDVFLSFRGEDTRNNFT-DNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL   92 (205)
Q Consensus        14 ~~~~~~yDVFISfr~~D~r~~Fv-~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl   92 (205)
                      ...+++|||||||+++|.  .|| ..|...|+++|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+.|.||.
T Consensus         7 ~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~   84 (161)
T d1fyva_           7 LQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCH   84 (161)
T ss_dssp             SSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHH
T ss_pred             cCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHH
Confidence            456789999999999993  577 57999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCeEEEEEeec
Q 028695           93 DELAKIVECGNKRKDRKVFAVFYGV  117 (205)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPIFy~v  117 (205)
                      .|+..+++++.+.+..++|||+++-
T Consensus        85 ~E~~~a~~~~~~~~~~~lIpV~l~~  109 (161)
T d1fyva_          85 YELYFAHHNLFHEGSNSLILILLEP  109 (161)
T ss_dssp             HHHHTTSCCCSCSSCSSEEEEESSC
T ss_pred             HHHHHHHHHHHHcCCCceeEEEEec
Confidence            9999999876667778999999963

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-23  Score=162.70  Aligned_cols=100  Identities=20%  Similarity=0.293  Sum_probs=89.9

Q ss_pred             CCceeeEEEecccccCCcchH-HHHHHHHHc--CCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHH
Q 028695           16 LQSKYDVFLSFRGEDTRNNFT-DNLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL   92 (205)
Q Consensus        16 ~~~~yDVFISfr~~D~r~~Fv-~~L~~aL~~--~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl   92 (205)
                      .++.|||||||+++|  ..|| ..|...|++  .|+++|+|++++.+|+.+.++|.++|++|++.|+|+|++|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            578999999999999  4577 569999986  49999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCeEEEEEeec
Q 028695           93 DELAKIVECGNKRKDRKVFAVFYGV  117 (205)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPIFy~v  117 (205)
                      .|+..++..+.+.++..+|||+++.
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~  104 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEP  104 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred             HHHHHHHHHHHHcCCceEEEEEecc
Confidence            9999887664566788999999963

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.85  E-value=0.59  Score=31.49  Aligned_cols=62  Identities=16%  Similarity=0.158  Sum_probs=44.9

Q ss_pred             ceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccC
Q 028695           18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN   84 (205)
Q Consensus        18 ~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~   84 (205)
                      ...+|||..-|++. ..++-.|...|.+.||++.+|..    +..+...+..|-..---.++++-++
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            35789999988875 46899999999999999999874    4456666666655433345555544

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.21  E-value=1.9  Score=31.76  Aligned_cols=72  Identities=11%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             cCCcchHHHHHHHHHcCCeEEEEcCC-CCCCCccchHHHHHHHHhcCceEEEeccC--CcCChhHHHHHHHHHHh
Q 028695           30 DTRNNFTDNLHTALIRNGFIAFKDDE-TLDRGNEISSELSKAIEESNVSIVILSKN--YASSPWCLDELAKIVEC  101 (205)
Q Consensus        30 D~r~~Fv~~L~~aL~~~Gi~vf~D~~-dl~~G~~i~~~i~~aI~~Sri~IvV~S~~--y~~S~wCl~EL~~i~~~  101 (205)
                      |....+...+...|++.|+.++.-.+ .......|-..-.++|++|++.|.++++-  -..+.=+..|+..+...
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al   89 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL   89 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC
Confidence            44456889999999999999996332 23333456667778999999999999852  12345688899998876

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=80.59  E-value=6.3  Score=28.77  Aligned_cols=89  Identities=10%  Similarity=0.146  Sum_probs=57.7

Q ss_pred             eeeEEEe---cccccCCcchHHHHHHHHHcCC--eEEEEcCCC-C--------CCC--------ccchHHHHHHHHhcCc
Q 028695           19 KYDVFLS---FRGEDTRNNFTDNLHTALIRNG--FIAFKDDET-L--------DRG--------NEISSELSKAIEESNV   76 (205)
Q Consensus        19 ~yDVFIS---fr~~D~r~~Fv~~L~~aL~~~G--i~vf~D~~d-l--------~~G--------~~i~~~i~~aI~~Sri   76 (205)
                      +..|||.   |+.+  ...++..+.++|++.|  +.+|.-.++ .        +-+        +.|...=.++|++|++
T Consensus         7 ~~kIYLAgP~F~~~--~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~   84 (167)
T d1s2da_           7 TGKIYLGSPFYSDA--QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATC   84 (167)
T ss_dssp             CEEEEEECCCSSHH--HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSE
T ss_pred             CceEEEECCCCCHH--HHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence            5667776   3322  2467899999999887  677742111 0        001        1133344578999999


Q ss_pred             eEEEeccCCcCChhHHHHHHHHHHhcccCCCCeEEEEEe
Q 028695           77 SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFY  115 (205)
Q Consensus        77 ~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~~ViPIFy  115 (205)
                      .|+++.....++ -...|+..+...     ++.|+-+--
T Consensus        85 vIA~ldg~~~D~-GTa~EiG~A~a~-----gKPvi~~~~  117 (167)
T d1s2da_          85 GVFLYDMDQLDD-GSAFEIGFMRAM-----HKPVILVPF  117 (167)
T ss_dssp             EEEEEESSSCCH-HHHHHHHHHHHT-----TCCEEEEEE
T ss_pred             EEEEeCCCCCCc-cHHHHHHHHHHC-----CCeEEEEec
Confidence            999998877653 467799998876     667765543