Citrus Sinensis ID: 028730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHcccccccEEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEEEcccEEEEEEEEEcccccccccccccHHHHcHHHccHHHHcccHHHHHHccccccccccccccccccHHHHHcccEEEEccc
Coil and Loop (DISEMBL)
MGAYTFVSELWRKKQSDVMRFLQRVRcweyrqhpsivrvtrptrpdkarrlgykakqgYVVYRVRVrrggrkrpvpkgivygkptnqgvtqlkfqrsKRSVAEERAgrklgglrvlnsywinedstykYFEVILvdpahnairndprinwlcnpvhkhrelrgltsagkkyrglrgkghlhhkarpsrratwkrnntlslrryr
Flexible Loop (DISEMBL)
mgaytfvselwrkkqsdVMRFLQRVrcweyrqhpsivrvtrptrpdkarrlgykakqgyvvyrvrvrrggrkrpvpkgivygkptnqgvtqlkfqrskrsvaeeragrklgglrvlnsyWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHrelrgltsagkkyrglrgkghlhhkarpsrratwkrnntlslrryr
Low Complexity Region (SEG)
MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQgyvvyrvrvrrggrkrpvpkgIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR
Disordered region (IsUnstruct)
***YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPT***KARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGK*************************KLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLT***************************************
Disordered Region (DISOPRED)
*GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGG***********************FQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGL*S*****************ARPSRRATWKRNNTLS*RRYR
Disordered Region (DISEMBL)
MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQ***************GRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRG****************ATWKRNNTLSLRRYR
Disordered Region (DISPRO)
*GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKR*****IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKK*********************WK*NN*LS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
O82528	204	60S ribosomal protein L15	N/A	no	1.0	1.0	0.936	1e-107
O23515	204	60S ribosomal protein L15	yes	no	1.0	1.0	0.906	1e-97
Q8VYF1	204	60S ribosomal protein L15	yes	no	1.0	1.0	0.901	2e-97
O65050	204	60S ribosomal protein L15	N/A	no	1.0	1.0	0.887	6e-95
O65082	204	60S ribosomal protein L15	N/A	no	1.0	1.0	0.887	9e-95
P54780	204	60S ribosomal protein L15	yes	no	0.995	0.995	0.730	6e-82
P61314	204	60S ribosomal protein L15	yes	no	0.995	0.995	0.726	9e-82
Q5NVE0	204	60S ribosomal protein L15	yes	no	0.995	0.995	0.726	9e-82
Q9CZM2	204	60S ribosomal protein L15	yes	no	0.995	0.995	0.726	9e-82
Q4R5B2	204	60S ribosomal protein L15	N/A	no	0.995	0.995	0.726	9e-82

>sp|O82528|RL15_PETHY 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/204 (93%), Positives = 197/204 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYT+VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYFEVILVD AH AIRNDPRINW+CNPVHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           H+KA PSRRA WKRN TLSL RYR
Sbjct: 181 HNKAPPSRRANWKRNQTLSLPRYR 204

Petunia hybrida (taxid: 4102)

>sp|O23515|RL151_ARATH 60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1

 Score =  355 bits (910), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/204 (90%), Positives = 197/204 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKY+E+ILVDPAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           +HK RPSRRATWK+NN+LSLRRYR
Sbjct: 181 NHKNRPSRRATWKKNNSLSLRRYR 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYF1|RL152_ARATH 60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1

 Score =  354 bits (908), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/204 (90%), Positives = 197/204 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKY+E+ILVDPAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           +HK RPSRRATWK+NN++SLRRYR
Sbjct: 181 NHKNRPSRRATWKKNNSISLRRYR 204

Arabidopsis thaliana (taxid: 3702)

>sp|O65050|RL15A_PICMA 60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1

 Score =  346 bits (887), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 181/204 (88%), Positives = 195/204 (95%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           IN+DSTYKY+E+ILVD AH+AIR DPRINW+CN VHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           +HKARPS+RATWKRNNTLSLRRYR
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204

Picea mariana (taxid: 3335)

>sp|O65082|RL15B_PICMA 60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1

 Score =  345 bits (886), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 181/204 (88%), Positives = 193/204 (94%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           IN+DSTYKY+EV+LVD AH  IRNDPRINW+CN VHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           +HKARPS+RATWKRNNTLSLRRYR
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204

Picea mariana (taxid: 3335)

>sp|P54780|RL15B_YEAST 60S ribosomal protein L15-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL15B PE=1 SV=2

 Score =  303 bits (776), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 165/204 (80%), Gaps = 1/204 (0%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYLEELERKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YRVRVRRG RKRPVPKG  YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW
Sbjct: 61  IYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +N+DSTYKYFEVILVDP H AIR D R NW+CNPVHKHRE RGLT+ GKK RG+  KGH 
Sbjct: 121 VNQDSTYKYFEVILVDPQHKAIRRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHK 179

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
            +  +  RR TWKR NTLSL RYR
Sbjct: 180 FNNTKAGRRKTWKRQNTLSLWRYR 203

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P61314|RL15_RAT 60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2

 Score =  302 bits (774), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 166/205 (80%), Gaps = 2/205 (0%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
           + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 180 LHHKARPSRRATWKRNNTLSLRRYR 204
            HH    SRRA W+R NTL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Rattus norvegicus (taxid: 10116)

>sp|Q5NVE0|RL15_PONAB 60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3

 Score =  302 bits (774), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 166/205 (80%), Gaps = 2/205 (0%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
           + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 180 LHHKARPSRRATWKRNNTLSLRRYR 204
            HH    SRRA W+R NTL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Pongo abelii (taxid: 9601)

>sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4

 Score =  302 bits (774), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 166/205 (80%), Gaps = 2/205 (0%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
           + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 180 LHHKARPSRRATWKRNNTLSLRRYR 204
            HH    SRRA W+R NTL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Mus musculus (taxid: 10090)

>sp|Q4R5B2|RL15_MACFA 60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1

 Score =  302 bits (774), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 166/205 (80%), Gaps = 2/205 (0%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
           + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 180 LHHKARPSRRATWKRNNTLSLRRYR 204
            HH    SRRA W+R NTL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
224074171	204	predicted protein [Populus trichocarpa]	1.0	1.0	0.965	1e-110
224063657	204	predicted protein [Populus trichocarpa]	1.0	1.0	0.955	1e-110
192913004	204	ribosomal protein L15 [Elaeis guineensis	1.0	1.0	0.926	1e-106
6094014	204	RecName: Full=60S ribosomal protein L15	1.0	1.0	0.936	1e-106
194707842	204	unknown [Zea mays] gi|414886708|tpg|DAA6	1.0	1.0	0.901	1e-104
226528613	204	60S ribosomal protein L15 [Zea mays] gi|	1.0	1.0	0.901	1e-104
255539825	204	ribosomal protein L15, putative [Ricinus	1.0	1.0	0.960	1e-104
357146016	204	PREDICTED: 60S ribosomal protein L15-lik	1.0	1.0	0.892	1e-104
226496391	204	60S ribosomal protein L15 [Zea mays] gi|	1.0	1.0	0.897	1e-103
326508668	204	predicted protein [Hordeum vulgare subsp	1.0	1.0	0.882	1e-103

>gi|224074171|ref|XP_002304285.1| predicted protein [Populus trichocarpa] gi|224138624|ref|XP_002326649.1| predicted protein [Populus trichocarpa] gi|118484142|gb|ABK93954.1| unknown [Populus trichocarpa] gi|222833971|gb|EEE72448.1| predicted protein [Populus trichocarpa] gi|222841717|gb|EEE79264.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/204 (96%), Positives = 200/204 (98%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVT PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYFEVILVD AHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHKARPSRRA WKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRANWKRNNTLSLRRYR 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063657|ref|XP_002301250.1| predicted protein [Populus trichocarpa] gi|224137010|ref|XP_002327000.1| predicted protein [Populus trichocarpa] gi|222835315|gb|EEE73750.1| predicted protein [Populus trichocarpa] gi|222842976|gb|EEE80523.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/204 (95%), Positives = 200/204 (98%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVT PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+VLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYFEVILVD AHNAIRNDPRINW+CNPVHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDAAHNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHKARPSRRATWKRN TLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNQTLSLRRYR 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192913004|gb|ACF06610.1| ribosomal protein L15 [Elaeis guineensis]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/204 (92%), Positives = 196/204 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKGIVYGKP NQG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYFEVILVD AHNAIRNDPRINW+C  VHKHRELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 VNEDSTYKYFEVILVDAAHNAIRNDPRINWICKGVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHK RPSRRATWKRN TLSLRRYR
Sbjct: 181 HHKVRPSRRATWKRNQTLSLRRYR 204

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6094014|sp|O82528.1|RL15_PETHY RecName: Full=60S ribosomal protein L15 gi|3608479|gb|AAD13389.1| ribosomal protein L15 [Petunia x hybrida]

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/204 (93%), Positives = 197/204 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYT+VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYFEVILVD AH AIRNDPRINW+CNPVHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           H+KA PSRRA WKRN TLSL RYR
Sbjct: 181 HNKAPPSRRANWKRNQTLSLPRYR 204

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194707842|gb|ACF88005.1| unknown [Zea mays] gi|414886708|tpg|DAA62722.1| TPA: ribosomal protein L15 [Zea mays]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/204 (90%), Positives = 196/204 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYFE+ILVD AH AIRNDPRINWLCNPVHKHRELRGLTSAGKK+RGLRGKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHTAIRNDPRINWLCNPVHKHRELRGLTSAGKKFRGLRGKGHT 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHK RPSRRATWKRN TLSLRRYR
Sbjct: 181 HHKNRPSRRATWKRNQTLSLRRYR 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528613|ref|NP_001148602.1| 60S ribosomal protein L15 [Zea mays] gi|194698344|gb|ACF83256.1| unknown [Zea mays] gi|195620698|gb|ACG32179.1| 60S ribosomal protein L15 [Zea mays] gi|195637452|gb|ACG38194.1| 60S ribosomal protein L15 [Zea mays] gi|414883699|tpg|DAA59713.1| TPA: ribosomal protein L15 [Zea mays]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/204 (90%), Positives = 195/204 (95%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWR+KQSDVMRF+QRVRCWEYRQ PSIVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYFE+ILVD AH AI+ DPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHKAIKTDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHT 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHK RPSRRATWKRN TLSLRRYR
Sbjct: 181 HHKNRPSRRATWKRNQTLSLRRYR 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539825|ref|XP_002510977.1| ribosomal protein L15, putative [Ricinus communis] gi|223550092|gb|EEF51579.1| ribosomal protein L15, putative [Ricinus communis]

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/204 (96%), Positives = 201/204 (98%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARR+GYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRMGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+VLNSYW
Sbjct: 61  IYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYFEVILVD AHNAIRNDPRINW+C PVHKHRELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357146016|ref|XP_003573847.1| PREDICTED: 60S ribosomal protein L15-like [Brachypodium distachyon]

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/204 (89%), Positives = 196/204 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY FVSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPD+ARRLG+KAKQGYV
Sbjct: 1   MGAYKFVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGR+LGGLRVLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYFEVILVD AHNA+RNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKG  
Sbjct: 121 VNEDSTYKYFEVILVDVAHNAVRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGQR 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHK RPSRRATWKRN T+SLRRYR
Sbjct: 181 HHKNRPSRRATWKRNQTVSLRRYR 204

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496391|ref|NP_001150386.1| 60S ribosomal protein L15 [Zea mays] gi|195638814|gb|ACG38875.1| 60S ribosomal protein L15 [Zea mays]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/204 (89%), Positives = 195/204 (95%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYFE+ILVD AH AIR DPRINWLCNPVHKHRELRGLTSAGKK+RGLRGKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHTAIRKDPRINWLCNPVHKHRELRGLTSAGKKFRGLRGKGHT 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHK RPSRRATWKRN TLSLRRYR
Sbjct: 181 HHKNRPSRRATWKRNQTLSLRRYR 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508668|dbj|BAJ95856.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/204 (88%), Positives = 196/204 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY FVSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPD+ARRLG+KAKQGYV
Sbjct: 1   MGAYKFVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGR+LGGLRVLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYFEVILVD AH+A+RNDPRINWLC PVHKHRELRGLTSAGKK+RGLRGKGH 
Sbjct: 121 VNEDSTYKYFEVILVDVAHSAVRNDPRINWLCKPVHKHRELRGLTSAGKKFRGLRGKGHR 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHK RPSRRATWKRN T+SLRRYR
Sbjct: 181 HHKNRPSRRATWKRNQTVSLRRYR 204

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2129081	204	AT4G16720 [Arabidopsis thalian	1.0	1.0	0.808	1.6e-88
TAIR|locus:2130923	204	AT4G17390 [Arabidopsis thalian	1.0	1.0	0.803	2.5e-88
CGD|CAL0005866	204	RPL15A [Candida albicans (taxi	0.995	0.995	0.656	3.5e-68
SGD|S000004728	204	RPL15B "Ribosomal 60S subunit	0.995	0.995	0.642	1.3e-66
UNIPROTKB|G5E686	204	G5E686 "Ribosomal protein L15"	0.995	0.995	0.634	3.6e-66
SGD|S000004019	204	RPL15A "Ribosomal 60S subunit	0.995	0.995	0.637	3.6e-66
UNIPROTKB|F1NQG5	206	RPL15 "Ribosomal protein L15"	0.995	0.985	0.634	4.5e-66
UNIPROTKB|E1BK63	204	E1BK63 "Ribosomal protein L15"	0.995	0.995	0.634	4.5e-66
UNIPROTKB|Q5EAD6	204	RPL15 "60S ribosomal protein L	0.995	0.995	0.634	4.5e-66
UNIPROTKB|E2QXF3	204	RPL15 "60S ribosomal protein L	0.995	0.995	0.634	4.5e-66

TAIR|locus:2129081 AT4G16720 [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 165/204 (80%), Positives = 176/204 (86%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                               IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct:    61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
             +NEDSTYKY+E+ILVDPAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH 
Sbjct:   121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query:   181 HHKARPSRRATWKRNNTLSLRRYR 204
             +HK RPSRRATWK+NN+LSLRRYR
Sbjct:   181 NHKNRPSRRATWKKNNSLSLRRYR 204

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2130923 AT4G17390 [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 164/204 (80%), Positives = 176/204 (86%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                               IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct:    61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
             +NEDSTYKY+E+ILVDPAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH 
Sbjct:   121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query:   181 HHKARPSRRATWKRNNTLSLRRYR 204
             +HK RPSRRATWK+NN++SLRRYR
Sbjct:   181 NHKNRPSRRATWKKNNSISLRRYR 204

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

CGD|CAL0005866 RPL15A [Candida albicans (taxid:5476)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 134/204 (65%), Positives = 150/204 (73%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ EL RKKQSDVMRFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYLEELQRKKQSDVMRFLYRVRCWEYRQKNVIHRASRPSRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKPTNQGV QLK+Q+S RS AEER GR+   LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPTNQGVNQLKYQKSLRSTAEERVGRRASNLRVLNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
             +N+DSTYKYFEVILVDP+H AIR D R NW+ NPVHKHRE RGLTSAGKK RG+  KGHL
Sbjct:   121 VNQDSTYKYFEVILVDPSHKAIRRDARYNWIVNPVHKHREARGLTSAGKKSRGIN-KGHL 179

Query:   181 HHKARPSRRATWKRNNTLSLRRYR 204
              +K +  RR TWK++NTLSL RYR
Sbjct:   180 FNKTKAGRRHTWKKHNTLSLWRYR 203

GO:0005730 "nucleolus" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

SGD|S000004728 RPL15B "Ribosomal 60S subunit protein L15B" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 131/204 (64%), Positives = 145/204 (71%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYLEELERKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW
Sbjct:    61 IYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
             +N+DSTYKYFEVILVDP H AIR D R NW+CNPVHKHRE RGLT+ GKK RG+  KGH 
Sbjct:   121 VNQDSTYKYFEVILVDPQHKAIRRDARYNWICNPVHKHREARGLTATGKKSRGIN-KGHK 179

Query:   181 HHKARPSRRATWKRNNTLSLRRYR 204
              +  +  RR TWKR NTLSL RYR
Sbjct:   180 FNNTKAGRRKTWKRQNTLSLWRYR 203

GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|G5E686 G5E686 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 130/205 (63%), Positives = 145/205 (70%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
             + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   180 LHHKARPSRRATWKRNNTLSLRRYR 204
              HH    SRRA W+R NTL L RYR
Sbjct:   180 FHHTVGGSRRAAWRRRNTLQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

SGD|S000004019 RPL15A "Ribosomal 60S subunit protein L15A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 130/204 (63%), Positives = 145/204 (71%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW
Sbjct:    61 IYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
             +N+DSTYKYFEVILVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH 
Sbjct:   121 VNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGIN-KGHK 179

Query:   181 HHKARPSRRATWKRNNTLSLRRYR 204
              +  +  RR TWKR NTLSL RYR
Sbjct:   180 FNNTKAGRRKTWKRQNTLSLWRYR 203

GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA

GO:0002181 "cytoplasmic translation" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1NQG5 RPL15 "Ribosomal protein L15" [Gallus gallus (taxid:9031)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 130/205 (63%), Positives = 145/205 (70%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     3 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 62

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    63 IYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 122

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
             + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   123 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 181

Query:   180 LHHKARPSRRATWKRNNTLSLRRYR 204
              HH    SRRA W+R NTL L RYR
Sbjct:   182 FHHTIGGSRRAAWRRRNTLQLHRYR 206

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|E1BK63 E1BK63 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 130/205 (63%), Positives = 145/205 (70%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKHPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
             + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   180 LHHKARPSRRATWKRNNTLSLRRYR 204
              HH    SRRA W+R NTL L RYR
Sbjct:   180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5EAD6 RPL15 "60S ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 130/205 (63%), Positives = 145/205 (70%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
             + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   180 LHHKARPSRRATWKRNNTLSLRRYR 204
              HH    SRRA W+R NTL L RYR
Sbjct:   180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2QXF3 RPL15 "60S ribosomal protein L15" [Canis lupus familiaris (taxid:9615)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 130/205 (63%), Positives = 145/205 (70%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
             + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   180 LHHKARPSRRATWKRNNTLSLRRYR 204
              HH    SRRA W+R NTL L RYR
Sbjct:   180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P91374	RL15_CAEEL	No assigned EC number	0.6292	0.9950	0.9950	yes	no
P30736	RL15_CHITE	No assigned EC number	0.6682	0.9950	0.9950	N/A	no
P54780	RL15B_YEAST	No assigned EC number	0.7303	0.9950	0.9950	yes	no
Q7T3M9	RL15_SINKN	No assigned EC number	0.7268	0.9950	0.9950	N/A	no
O74895	RL15A_SCHPO	No assigned EC number	0.7058	0.9852	1.0	yes	no
Q4R5B2	RL15_MACFA	No assigned EC number	0.7268	0.9950	0.9950	N/A	no
Q7T2N5	RL15_TACFU	No assigned EC number	0.7170	0.9950	0.9950	N/A	no
Q8X034	RL15_NEUCR	No assigned EC number	0.7401	0.9950	1.0	N/A	no
Q7T3P0	RL15_HYPNO	No assigned EC number	0.7219	0.9950	0.9950	N/A	no
P61368	RL15_HYDVU	No assigned EC number	0.7170	0.9950	0.9950	N/A	no
P61369	RL15_SILAS	No assigned EC number	0.7170	0.9950	0.9950	N/A	no
Q9US22	RL15B_SCHPO	No assigned EC number	0.7058	0.9852	1.0	yes	no
P61367	RL15_EPICO	No assigned EC number	0.7268	0.9950	0.9950	N/A	no
E2QXF3	RL15_CANFA	No assigned EC number	0.7268	0.9950	0.9950	yes	no
Q8U2F9	RL15E_PYRFU	No assigned EC number	0.5130	0.9264	0.9742	yes	no
A3DMU2	RL15E_STAMF	No assigned EC number	0.5028	0.8382	0.7772	yes	no
O13418	RL15_ASPNG	No assigned EC number	0.7058	0.9950	1.0	yes	no
O65082	RL15B_PICMA	No assigned EC number	0.8872	1.0	1.0	N/A	no
Q7T3N3	RL15_PARDA	No assigned EC number	0.7121	0.9950	0.9950	N/A	no
O82528	RL15_PETHY	No assigned EC number	0.9362	1.0	1.0	N/A	no
O82712	RL15_QUESU	No assigned EC number	0.5637	0.9852	1.0	N/A	no
Q90YV2	RL15_ICTPU	No assigned EC number	0.7317	0.9950	0.9950	N/A	no
Q7T3N1	RL15_MYLPI	No assigned EC number	0.7219	0.9950	0.9950	N/A	no
Q7T3N9	RL15_CARAU	No assigned EC number	0.7170	0.9950	0.9950	N/A	no
Q7T3N8	RL15_CTEID	No assigned EC number	0.7268	0.9950	0.9950	N/A	no
B8D6C6	RL15E_DESK1	No assigned EC number	0.5174	0.8284	0.7681	yes	no
P61313	RL15_HUMAN	No assigned EC number	0.7268	0.9950	0.9950	yes	no
Q7T3N2	RL15_MONAL	No assigned EC number	0.7268	0.9950	0.9950	N/A	no
Q9CZM2	RL15_MOUSE	No assigned EC number	0.7268	0.9950	0.9950	yes	no
Q86K01	RL15_DICDI	No assigned EC number	0.6878	1.0	0.9951	yes	no
Q7T3N7	RL15_CYPCA	No assigned EC number	0.7170	0.9950	0.9950	N/A	no
Q7T3N6	RL15_HYPMO	No assigned EC number	0.7170	0.9950	0.9950	N/A	no
P61314	RL15_RAT	No assigned EC number	0.7268	0.9950	0.9950	yes	no
Q9XYC2	RL15_ORCLI	No assigned EC number	0.6421	1.0	1.0	N/A	no
Q22A30	RL15_TETTS	No assigned EC number	0.6568	1.0	1.0	N/A	no
O23515	RL151_ARATH	No assigned EC number	0.9068	1.0	1.0	yes	no
P05748	RL15A_YEAST	No assigned EC number	0.7254	0.9950	0.9950	yes	no
Q7T3N4	RL15_MEGAM	No assigned EC number	0.7170	0.9950	0.9950	N/A	no
Q8VYF1	RL152_ARATH	No assigned EC number	0.9019	1.0	1.0	yes	no
Q5EAD6	RL15_BOVIN	No assigned EC number	0.7268	0.9950	0.9950	yes	no
P54060	RL15E_METJA	No assigned EC number	0.5157	0.9215	0.9690	yes	no
P52818	RL15_ANOGA	No assigned EC number	0.7150	0.8725	0.8725	yes	no
Q7T2N4	RL15_SILME	No assigned EC number	0.7170	0.9950	0.9950	N/A	no
O17445	RL15_DROME	No assigned EC number	0.6634	0.9950	0.9950	yes	no
Q7T3P1	RL15_ANGJA	No assigned EC number	0.7121	0.9950	0.9950	N/A	no
A4FZN9	RL15E_METM5	No assigned EC number	0.4948	0.9411	0.9896	yes	no
Q5NVE0	RL15_PONAB	No assigned EC number	0.7268	0.9950	0.9950	yes	no
O65050	RL15A_PICMA	No assigned EC number	0.8872	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam00827	192	pfam00827, Ribosomal_L15e, Ribosomal L15	1e-119
PTZ00026	204	PTZ00026, PTZ00026, 60S ribosomal protein L15; Pro	1e-115
COG1632	195	COG1632, RPL15A, Ribosomal protein L15E [Translati	2e-74
PRK04243	196	PRK04243, PRK04243, 50S ribosomal protein L15e; Va	4e-69

>gnl|CDD|144426 pfam00827, Ribosomal_L15e, Ribosomal L15

 Score =  334 bits (859), Expect = e-119
 Identities = 147/192 (76%), Positives = 162/192 (84%)

Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
           GAY ++ ELW+KKQSDVMRFL RVRCWEYRQ P+IVRV RPTRPDKARRLGYKAKQGYV+
Sbjct: 1   GAYKYIRELWKKKQSDVMRFLLRVRCWEYRQLPAIVRVERPTRPDKARRLGYKAKQGYVI 60

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
           YRVRVRRGGRKRP PKG  YGKP   GV +LK  +S +S+AEERAGRK   LRVLNSYW+
Sbjct: 61  YRVRVRRGGRKRPRPKGGRYGKPKRMGVNKLKPAKSLQSIAEERAGRKCPNLRVLNSYWV 120

Query: 122 NEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLH 181
            +D TYKY+EVILVDP+H AIRNDPRINW+C PVHKHRE RGLTSAG+K RGLRGKGH  
Sbjct: 121 GQDGTYKYYEVILVDPSHPAIRNDPRINWICKPVHKHREFRGLTSAGRKSRGLRGKGHGT 180

Query: 182 HKARPSRRATWK 193
            K RPS RA WK
Sbjct: 181 EKTRPSIRANWK 192

Length = 192

>gnl|CDD|185402 PTZ00026, PTZ00026, 60S ribosomal protein L15; Provisional

 Score =  326 bits (838), Expect = e-115
 Identities = 157/204 (76%), Positives = 176/204 (86%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +++ELW+KKQSDVMRFL RVR WEYRQ P I RV+RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YRVRVRRGGRKRPV KGIVYGKP  QGV +LK  R+ R+VAEER G++ G LRVLNSYW
Sbjct: 61  IYRVRVRRGGRKRPVRKGIVYGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           + +DSTYK++EVILVDP HNAIRNDPRINW+CNPVHKHRELRGLTSAG+K RGLR KGH 
Sbjct: 121 VGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRELRGLTSAGRKSRGLRVKGHR 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
             K RPSRRA WKR N + LRRYR
Sbjct: 181 ASKLRPSRRANWKRRNRIVLRRYR 204

Length = 204

>gnl|CDD|224547 COG1632, RPL15A, Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

 Score =  222 bits (568), Expect = 2e-74
 Identities = 117/204 (57%), Positives = 141/204 (69%), Gaps = 11/204 (5%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
             AY ++ E W+K +  V+R L R R  E+R+ PSIVR+ RPTR D+AR LGYKAKQGYV
Sbjct: 2   RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYV 61

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           V RVRVRRGGR R  PK     +PT  GV ++K ++S + +AEERAGRK   L VLNSYW
Sbjct: 62  VVRVRVRRGGRNRKRPKK--GRRPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYW 119

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           + ED  YKYFEVILVDP H AI+NDP +NW+C PVHK R  RGLTSAGKK RGLR  G  
Sbjct: 120 VGEDGYYKYFEVILVDPRHPAIKNDPNLNWICRPVHKGRVFRGLTSAGKKSRGLRKGG-- 177

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
                  + A  KR +T +L+RYR
Sbjct: 178 -------KGAEKKRPSTRALQRYR 194

Length = 195

>gnl|CDD|235263 PRK04243, PRK04243, 50S ribosomal protein L15e; Validated

 Score =  209 bits (533), Expect = 4e-69
 Identities = 103/195 (52%), Positives = 133/195 (68%), Gaps = 4/195 (2%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           M  Y+++ E W++ +   +  L   R  E+R+ P++VR+ RPTR D+AR LGYKAKQG V
Sbjct: 3   MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIV 62

Query: 61  VYRVRVRRGGRKRPVPKGIVYG-KPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSY 119
           V RVRVRRGG ++P PKG   G +P   GV ++   +S + +AEERA RK   L VLNSY
Sbjct: 63  VVRVRVRRGGLRKPRPKG---GRRPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSY 119

Query: 120 WINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH 179
           W+ ED  YK++EVILVDP H AI+NDP +NW+C+  H+ R  RGLTSAGKK RGLR KG 
Sbjct: 120 WVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRVFRGLTSAGKKGRGLRKKGK 179

Query: 180 LHHKARPSRRATWKR 194
              K RPS RA  +R
Sbjct: 180 GTEKVRPSIRANERR 194

Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
PTZ00026	204	60S ribosomal protein L15; Provisional	100.0
KOG1678	204	consensus 60s ribosomal protein L15 [Translation,	100.0
PF00827	192	Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439	100.0
PRK04243	196	50S ribosomal protein L15e; Validated	100.0
COG1632	195	RPL15A Ribosomal protein L15E [Translation, riboso	100.0

>PTZ00026 60S ribosomal protein L15; Provisional

Probab=100.00  E-value=3e-119  Score=766.89  Aligned_cols=204  Identities=77%  Similarity=1.301  Sum_probs=203.4

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 028730            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (204)
Q Consensus         1 mg~y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vi~RvRVrrGgrkr~~pkg~~   80 (204)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||++||+++|+|+|+|
T Consensus         1 Mg~Y~yi~e~wkkkqsd~~r~l~r~R~we~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkr~~~kg~~   80 (204)
T PTZ00026          1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKGIV   80 (204)
T ss_pred             CcHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEcCCCCChhHHHHcCCcccceEEEEEEEEeeCCCCCCccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCceeeeeeeeccCCCceeEEEEEecCCCcccccCCCCcccccCCcccch
Q 028730           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE  160 (204)
Q Consensus        81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~~WI~~~~hk~Re  160 (204)
                      ||||++||||+||+++|||+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||
T Consensus        81 ~gkpk~~Gv~~lk~~kslq~iAEeRv~rk~~nLrVLNSYWV~qDg~yK~yEVILvDp~H~aIr~Dp~~nWI~~~~hk~Re  160 (204)
T PTZ00026         81 YGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRE  160 (204)
T ss_pred             CCCccccCccccCcchhHHHHHHHHhhccCCCcEEecceeEcCCCCcccEEEEEecCCCccceeCcccceecccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccccccccCCCCCCCcccccCCCchhhhcccceeEeeecC
Q 028730          161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR  204 (204)
Q Consensus       161 ~RGLTsagkk~RGLr~kG~~~~k~r~S~ra~w~r~nt~~l~r~r  204 (204)
                      ||||||||+|+|||++|||+++|++||++|+|+++|||+|+|||
T Consensus       161 ~RGLTsAGkK~RGL~~kG~~~~k~r~s~ra~~~r~n~~~l~r~r  204 (204)
T PTZ00026        161 LRGLTSAGRKSRGLRVKGHRASKLRPSRRANWKRRNRIVLRRYR  204 (204)
T ss_pred             hccccccccccCCcCCCCCCcccCCcchhhhhhhccceeeEecC
Confidence            99999999999999999999999999999999999999999997

>KOG1678 consensus 60s ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.4e-118  Score=747.45  Aligned_cols=203  Identities=81%  Similarity=1.346  Sum_probs=202.1

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 028730            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (204)
Q Consensus         1 mg~y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vi~RvRVrrGgrkr~~pkg~~   80 (204)
                      ||||+||+|||++||||+|+||+++|||||||+++|||+++||||||||+||||||||||||||||++||+|+|+|||.|
T Consensus         1 MgAykY~~El~rkKQSDvmrfLlRvr~weYrQ~~~~hr~~rPtrpdkARrLGYkAKQG~viYrirVrrG~rKrpvpkG~t   80 (204)
T KOG1678|consen    1 MGAYKYLQELWRKKQSDVMRFLLRVRCWEYRQLSAIHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT   80 (204)
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcCCCCCCchHHHhccccccceeEEEEEEEecCCccCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCceeeeeeeeccCCCceeEEEEEecCCCcccccCCCCcccccCCcccch
Q 028730           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE  160 (204)
Q Consensus        81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~~WI~~~~hk~Re  160 (204)
                      ||||+|+|||||||++|+|++||||||++|+||+|||||||+||++|||||||||||+|.||++||+|||||+|||||||
T Consensus        81 yGKp~~~GvnqlK~~rs~qs~AEer~Gr~~g~LrVlNSYWv~qDstYk~fEVIlvDp~h~aIRrdp~~nwI~kpvhKhRE  160 (204)
T KOG1678|consen   81 YGKPVNQGVNQLKFQRSLQSVAEERAGRRCGNLRVLNSYWVNQDSTYKYFEVILVDPFHKAIRRDPRINWICKPVHKHRE  160 (204)
T ss_pred             cCCccccchhhhhhhHHHHHHHHHHhhccccceeeeehhhccCccceeeEEEEEECcHHHHHhcCCCcccccchhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccccccccCCCCCCCcccccC-CCchhhhcccceeEeeecC
Q 028730          161 LRGLTSAGKKYRGLRGKGHLHHKAR-PSRRATWKRNNTLSLRRYR  204 (204)
Q Consensus       161 ~RGLTsagkk~RGLr~kG~~~~k~r-~S~ra~w~r~nt~~l~r~r  204 (204)
                      +|||||||+||||| ||||+|++|+ +|++|+|+|+|||+|+|||
T Consensus       161 ~rGLTsagkksrGl-gKg~kf~~t~~gs~ra~Wkr~ntl~l~ryr  204 (204)
T KOG1678|consen  161 LRGLTSAGKKSRGL-GKGHKFNKTIGGSRRATWKRRNTLSLHRYR  204 (204)
T ss_pred             hcccccccccccCc-ccccccccCCCchhHHHHhhcccceeeecC
Confidence            99999999999999 9999999999 8999999999999999997

>PF00827 Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.9e-114  Score=729.59  Aligned_cols=192  Identities=77%  Similarity=1.284  Sum_probs=179.4

Q ss_pred             chHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCccc
Q 028730            2 GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY   81 (204)
Q Consensus         2 g~y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vi~RvRVrrGgrkr~~pkg~~~   81 (204)
                      |||+||+|+|++||||+|+||+++|||||||+|+|+|+|+||||||||+||||||||||||||||++||+++|+|+|++|
T Consensus         1 g~Ykyi~e~wk~k~~d~~~~l~r~R~~e~R~~~av~Ri~rPtR~dkAR~LGYKAKQG~vv~RvrVrrGgrkr~~~kg~~~   80 (192)
T PF00827_consen    1 GAYKYIRELWKKKQSDVMRFLLRIRLWEWRQLPAVHRIERPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPRPKGGRY   80 (192)
T ss_dssp             -SHHHHHHHHHTTTSHHHHHHHHHHHHHHHHS-SEEEESS-SSHHHHHHTT-SSSTTEEEEEEEEESSS---SSSSSSST
T ss_pred             CHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEECCCCCCccHHHHcCCccCCeEEEEEEEEecCCCCCcccCCccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhHHHHHHhhhccCCceeeeeeeeccCCCceeEEEEEecCCCcccccCCCCcccccCCcccchh
Q 028730           82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHREL  161 (204)
Q Consensus        82 ~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~~WI~~~~hk~Re~  161 (204)
                      |||++||||+||+++|||+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+||||||
T Consensus        81 gKPk~~Gv~~~k~~kslq~iAEeRagrk~~nLrVLnSYwV~eDg~yK~fEVIlVDp~h~~Ir~D~~~nWI~~~~hk~R~~  160 (192)
T PF00827_consen   81 GKPKHQGVNQLKPAKSLQSIAEERAGRKYPNLRVLNSYWVGEDGTYKWFEVILVDPNHPAIRNDPDINWICNPVHKHREF  160 (192)
T ss_dssp             SSCGGSSSTSS--SS-HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHTTTTTGGGGSGGGTTTTT
T ss_pred             cccccceeeccCccccHHHHhhhhhccccCCceEEeeEEeCCCCcceeEEEEEecCCcHHHhcCCccceecccccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccccccCCCCCCCcccccCCCchhhhc
Q 028730          162 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWK  193 (204)
Q Consensus       162 RGLTsagkk~RGLr~kG~~~~k~r~S~ra~w~  193 (204)
                      |||||||+|+|||++|||+++||+||++|||+
T Consensus       161 RGLTsAgkk~RGL~~kG~~~~k~rpS~ra~wk  192 (192)
T PF00827_consen  161 RGLTSAGKKSRGLRGKGHGAEKTRPSRRANWK  192 (192)
T ss_dssp             TTTSHHHHHHTTTT-SSTTCGGTSSTTTTTCC
T ss_pred             ccccchhhhhcccccCccccccCCcccccccC
Confidence            99999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of: Mammalian L15. Insect L15. Plant L15. Yeast YL10 (L13) (Rp15r). Archaebacterial L15e. These proteins have about 200 amino acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_P 4A1E_L 4A17_L 4A1A_L 4A1C_L 2ZKR_m 3IZS_P 1S1I_L 3O58_O 3O5H_O ....

>PRK04243 50S ribosomal protein L15e; Validated

Probab=100.00  E-value=1.7e-111  Score=715.94  Aligned_cols=192  Identities=53%  Similarity=0.910  Sum_probs=190.2

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 028730            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (204)
Q Consensus         1 mg~y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vi~RvRVrrGgrkr~~pkg~~   80 (204)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+|||||||||||||||||+||+++|+|+|+ 
T Consensus         3 m~~Y~yi~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Rv~rPTR~DrAR~LGYKAKQG~vv~RvrVRrGgrkr~~~kg~-   81 (196)
T PRK04243          3 MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRVRRGGLRKPRPKGG-   81 (196)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHHHHHhccCceEEcCCCCChhHHHHcCccccceEEEEEEEeccCCCCCCCcCCC-
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCceeeeeeeeccCCCceeEEEEEecCCCcccccCCCCcccccCCcccch
Q 028730           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE  160 (204)
Q Consensus        81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~~WI~~~~hk~Re  160 (204)
                       |||++||||+|||++|||+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||
T Consensus        82 -~kPk~~Gv~~lk~~kslq~iAEERa~rk~~nlrVLNSYwV~qDg~yK~fEVIlVDp~H~aIr~Dp~~nWI~~~~~k~R~  160 (196)
T PRK04243         82 -RRPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRV  160 (196)
T ss_pred             -CCccccCccccchhhhHHHHHHHHhhccCCCcEeeeeeEeccCCCcccEEEEEecCCCcchhcCcccceecccccchhh
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccccccccCCCCCCCcccccCCCchhhhcc
Q 028730          161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR  194 (204)
Q Consensus       161 ~RGLTsagkk~RGLr~kG~~~~k~r~S~ra~w~r  194 (204)
                      ||||||||+|+|||++|||+++|++||.+|+-++
T Consensus       161 ~RGLTSAGkK~RGl~~kg~~~~k~rps~ra~~~~  194 (196)
T PRK04243        161 FRGLTSAGKKGRGLRKKGKGTEKVRPSIRANERR  194 (196)
T ss_pred             hhcccccccccccccccCCCceecCccccccccc
Confidence            9999999999999999999999999999998764

>COG1632 RPL15A Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.3e-91  Score=589.72  Aligned_cols=193  Identities=60%  Similarity=0.964  Sum_probs=189.1

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 028730            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (204)
Q Consensus         1 mg~y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vi~RvRVrrGgrkr~~pkg~~   80 (204)
                      ||||+||.|+|++++++++.+|+++|+|+||++|+|+||++|||+|+||.||||||||||||||||++||+.+++|++| 
T Consensus         2 ~~~y~yv~e~wkk~~~~~~~~l~~~r~~~wR~~~~i~R~erPTrldrAR~LGykaKqG~vvvrvrVrrG~~~~~r~~~g-   80 (195)
T COG1632           2 RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYVVVRVRVRRGGRNRKRPKKG-   80 (195)
T ss_pred             ccHHHHHHHHHhCchHHHHhHHHhHHHHhhccCCceEEecCCCHHHHHHhcCCcccCceEEEEEeeecccccCcCccCC-
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCceeeeeeeeccCCCceeEEEEEecCCCcccccCCCCcccccCCcccch
Q 028730           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE  160 (204)
Q Consensus        81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~~WI~~~~hk~Re  160 (204)
                       ++|++||||++++++|+|.|||||||++||||+|||||||+|||.|||||||||||+||||++||+|||||+++|+||+
T Consensus        81 -rrp~~mgvnki~~~ks~~~iAEerA~RK~pNL~vLnSYwVgeDg~yK~fEvIlvDp~H~aIk~Dp~l~wI~~~~~kgR~  159 (195)
T COG1632          81 -RRPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKNDPNLNWICRPVHKGRV  159 (195)
T ss_pred             -CCcCcccccccChhhhHHHHHHHHhhccCCCcEeeeeEEeccccceeeEEEEEecCCChhhcCCCceeeecccccCCce
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccccccccCCCCCCCcccccCCCchhhhccc
Q 028730          161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN  195 (204)
Q Consensus       161 ~RGLTsagkk~RGLr~kG~~~~k~r~S~ra~w~r~  195 (204)
                      ||||||||+|+|||+.+|.++++.+||.+|+++.+
T Consensus       160 ~RgltsagkK~rgl~k~~k~~~~~R~~~~~~~~~~  194 (195)
T COG1632         160 FRGLTSAGKKSRGLRKGGKGAEKKRPSTRALQRYR  194 (195)
T ss_pred             eccccccchhhhhhhccCCcccccCcchhhhhhhc
Confidence            99999999999999888899999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3izr_P	204	Localization Of The Large Subunit Ribosomal Protein		1e-93
3izs_P	204	Localization Of The Large Subunit Ribosomal Protein		9e-69
2zkr_m	204	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-68
1s1i_L	203	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		5e-68
3jyw_L	192	Structure Of The 60s Proteins For Eukaryotic Riboso		4e-64
4a17_L	204	T.Thermophila 60s Ribosomal Subunit In Complex With		5e-64
3zf7_Q	221	High-resolution Cryo-electron Microscopy Structure		5e-57
3j21_M	194	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-36
1jj2_L	194	Fully Refined Crystal Structure Of The Haloarcula M		1e-31
3cc2_M	196	The Refined Crystal Structure Of The Haloarcula Mar		2e-30
3g4s_M	194	Co-Crystal Structure Of Tiamulin Bound To The Large		3e-30
1yi2_M	195	Crystal Structure Of Erythromycin Bound To The G209		4e-30
2qa4_M	196	A More Complete Structure Of The The L7L12 STALK OF		4e-30
1vq9_M	195	The Structure Of Cca-Phe-Cap-Bio And The Antibiotic		4e-30
1s72_M	194	Refined Crystal Structure Of The Haloarcula Marismo		4e-30
1yhq_M	194	Crystal Structure Of Azithromycin Bound To The G209		4e-30
1ffk_I	194	Crystal Structure Of The Large Ribosomal Subunit Fr		7e-29

>pdb|3IZR|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  338 bits (866), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/204 (80%), Positives = 176/204 (86%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAY +VSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                             IVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYFE+ILVD AH+AIRNDPRINWLC PVHKHRELRGLTSAGKKYRGLRGKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
           HHKARPSRRATWKRN T+SLRRYR
Sbjct: 181 HHKARPSRRATWKRNQTVSLRRYR 204

>pdb|3IZS|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  255 bits (652), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 130/204 (63%), Positives = 145/204 (71%), Gaps = 1/204 (0%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                               YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW
Sbjct: 61  IYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYW 120
Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +N+DSTYKYFEVILVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH 
Sbjct: 121 VNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHK 179
Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
            +  +  RR TWKR NTLSL RYR
Sbjct: 180 FNNTKAGRRKTWKRQNTLSLWRYR 203

>pdb|2ZKR|MM Chain m, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204

Iteration: 1
 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 145/205 (70%), Gaps = 2/205 (0%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                               YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH- 179
           + EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179
Query: 180 LHHKARPSRRATWKRNNTLSLRRYR 204
            HH    SRRA W+R NTL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

>pdb|1S1I|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 203

Iteration: 1
 Score =  253 bits (646), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 129/203 (63%), Positives = 144/203 (70%), Gaps = 1/203 (0%)
Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXX 61
           GAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ    
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60
Query: 62  XXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
                              YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120
Query: 122 NEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLH 181
           N+DSTYKYFEVILVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH  
Sbjct: 121 NQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKF 179
Query: 182 HKARPSRRATWKRNNTLSLRRYR 204
           +  +  RR TWKR NTLSL RYR
Sbjct: 180 NNTKAGRRKTWKRQNTLSLWRYR 202

>pdb|3JYW|L Chain L, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 192

Iteration: 1
 Score =  240 bits (613), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 136/193 (70%), Gaps = 1/193 (0%)
Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXX 61
           GAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ    
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60
Query: 62  XXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
                              YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120
Query: 122 NEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLH 181
           N+DSTYKYFEVILVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH  
Sbjct: 121 NQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKF 179
Query: 182 HKARPSRRATWKR 194
           +  +  RR TWKR
Sbjct: 180 NNTKAGRRKTWKR 192

>pdb|4A17|L Chain L, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 204

Iteration: 1
 Score =  240 bits (612), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 117/204 (57%), Positives = 142/204 (69%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAY ++ ELWRKKQSD+M F+ R+R WEYRQ P I + +R +RPDKAR+LGYK K    
Sbjct: 1   MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYA 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                             IVYGKP++ G+ QLKF R+ RS AEER G+++  LRVLNSYW
Sbjct: 61  IWRVRVRRGGRKRPVSKGIVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYW 120
Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           + +D TYK++EVIL DP+HNAIRNDPRINW+C   HKHRELRGLTSAG+K RGLR KGH 
Sbjct: 121 VGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKGHR 180
Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
               R SR+  W+    L LRRYR
Sbjct: 181 AKSLRTSRKGNWRARQMLKLRRYR 204

>pdb|3ZF7|Q Chain Q, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 221

Iteration: 1
 Score =  216 bits (551), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 129/187 (68%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MG++ +++ELW+KK SDVMRF+QRVR WE+R   +IVR+ RPTRP+KAR +GYK KQ   
Sbjct: 18  MGSFMYLNELWKKKSSDVMRFIQRVRAWEFRHQHTIVRLRRPTRPEKARMVGYKTKQGYV 77
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                             I YGKP   GV   K  ++ R VAE+R G+K G LRVLNSYW
Sbjct: 78  VFRVRVRRGGRKRPVHKGITYGKPNTAGVLGRKLNKNNRVVAEQRLGKKYGNLRVLNSYW 137
Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           +N DST+ ++EV+ VDP H AIR DPRINW+ N VHKHRE RGLTSAG+K+RGLR KGH 
Sbjct: 138 VNADSTFLWYEVVAVDPMHRAIRRDPRINWIVNAVHKHREQRGLTSAGRKHRGLRQKGHK 197
Query: 181 HHKARPS 187
             K RPS
Sbjct: 198 ASKLRPS 204

>pdb|3J21|M Chain M, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 194

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MG Y ++ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ   
Sbjct: 1   MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 KP+  G  +   ++S + +AEE+A RK   L VLNSYW
Sbjct: 61  IVRVRVRKGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYW 118
Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           + ED  YK+FEVI+VDP H  I++DP+I W+    HK R  RGLTSAGKK RGLR KG  
Sbjct: 119 VGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKG 178
Query: 181 HHKARPSRRAT 191
             K RPS RA 
Sbjct: 179 AEKVRPSIRAN 189

>pdb|1JJ2|L Chain L, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ E W++ +   +  L   R  E+R  P++VR+ RPTR D+AR LGYKAKQ     
Sbjct: 4   AYSYIREAWKRPKEGQIAELMWHRMQEWRNEPAVVRIERPTRLDRARSLGYKAKQGIIVV 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K     V ++  +++ + +AEERA RK   LRVLNSY + 
Sbjct: 64  RVAIRKGSSRRTRFNKGRRSK--RMMVNRITRKKNIQRIAEERANRKFPNLRVLNSYSVG 121
Query: 123 EDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHH 182
           ED  +K+ EVIL+DP H AI++D +++W+    H+ R  RGLTSAG++ RGLRG+G    
Sbjct: 122 EDGRHKWHEVILIDPDHPAIKSDDQLSWISRTRHRLRTFRGLTSAGRRCRGLRGQGKGSE 181
Query: 183 KARPSRRAT 191
           K RPS R  
Sbjct: 182 KVRPSLRVN 190

>pdb|3CC2|M Chain M, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 196

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 123 EDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHH 182
           +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    
Sbjct: 123 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 182
Query: 183 KARPSRRAT 191
           K RPS R+ 
Sbjct: 183 KTRPSLRSN 191

>pdb|3G4S|M Chain M, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 194

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 123 EDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHH 182
           +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    
Sbjct: 122 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 181
Query: 183 KARPSRRAT 191
           K RPS R+ 
Sbjct: 182 KTRPSLRSN 190

>pdb|1YI2|M Chain M, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 123 EDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHH 182
           +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    
Sbjct: 123 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 182
Query: 183 KARPSRRAT 191
           K RPS R+ 
Sbjct: 183 KTRPSLRSN 191

>pdb|2QA4|M Chain M, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit Length = 196

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 123 EDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHH 182
           +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    
Sbjct: 123 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 182
Query: 183 KARPSRRAT 191
           K RPS R+ 
Sbjct: 183 KTRPSLRSN 191

>pdb|1VQ9|M Chain M, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 123 EDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHH 182
           +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    
Sbjct: 123 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 182
Query: 183 KARPSRRAT 191
           K RPS R+ 
Sbjct: 183 KTRPSLRSN 191

>pdb|1S72|M Chain M, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 123 EDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHH 182
           +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    
Sbjct: 122 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 181
Query: 183 KARPSRRAT 191
           K RPS R+ 
Sbjct: 182 KTRPSLRSN 190

>pdb|1YHQ|M Chain M, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 194

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 123 EDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHH 182
           +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    
Sbjct: 122 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 181
Query: 183 KARPSRRAT 191
           K RPS R+ 
Sbjct: 182 KTRPSLRSN 190

>pdb|1FFK|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 108/198 (54%), Gaps = 18/198 (9%)
Query: 4   YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXX 63
           Y ++ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+      
Sbjct: 5   YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVR 64
Query: 64  XXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRS-------VAEERAGRKLGGLRVL 116
                                 N+G    K   ++R        +AEERA RK   + VL
Sbjct: 65  VRIRRGGRRATR---------PNKGRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVL 115
Query: 117 NSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG 176
           NSYW+ ED  YK+FEVILVD  H AI++DP+++W+     + R  RGLTSAG+K RGLR 
Sbjct: 116 NSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRR 173
Query: 177 KGHLHHKARPSRRATWKR 194
           KG    K RPS RA +++
Sbjct: 174 KGRGAEKVRPSLRANFRK 191
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	6e-97
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	2e-96
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	1e-90
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	2e-89
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	2e-85

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L Length = 204

 Score =  277 bits (711), Expect = 2e-96
 Identities = 134/204 (65%), Positives = 161/204 (78%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSD+M F+ R+R WEYRQ P I + +R +RPDKAR+LGYK K GY 
Sbjct: 1   MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYA 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           ++RVRVRRGGRKRPV KGIVYGKP++ G+ QLKF R+ RS AEER G+++  LRVLNSYW
Sbjct: 61  IWRVRVRRGGRKRPVSKGIVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYW 120

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           + +D TYK++EVIL DP+HNAIRNDPRINW+C   HKHRELRGLTSAG+K RGLR KGH 
Sbjct: 121 VGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKGHR 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 204
               R SR+  W+    L LRRYR
Sbjct: 181 AKSLRTSRKGNWRARQMLKLRRYR 204

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 1s1i_L Length = 192

 Score =  262 bits (672), Expect = 1e-90
 Identities = 139/193 (72%), Positives = 156/193 (80%), Gaps = 1/193 (0%)

Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
           GAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQG+V+
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
           YRVRVRRG RKRPVPKG  YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120

Query: 122 NEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLH 181
           N+DSTYKYFEVILVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH  
Sbjct: 121 NQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKF 179

Query: 182 HKARPSRRATWKR 194
           +  +  RR TWKR
Sbjct: 180 NNTKAGRRKTWKR 192

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ... Length = 194

 Score =  259 bits (664), Expect = 2e-89
 Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 2/194 (1%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
             AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQG +
Sbjct: 2   RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVI 61

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           V RV VR+G  ++   K     +   QGVT++  ++  + VAEERA R    LRVLNSY 
Sbjct: 62  VARVSVRKGSARKRRHKA--GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYS 119

Query: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL 180
           + +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG  
Sbjct: 120 VGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKG 179

Query: 181 HHKARPSRRATWKR 194
             K RPS R+   +
Sbjct: 180 SEKTRPSLRSNGGK 193

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2 Length = 194

 Score =  249 bits (638), Expect = 2e-85
 Identities = 86/195 (44%), Positives = 122/195 (62%), Gaps = 4/195 (2%)

Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
             Y ++ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+G +V
Sbjct: 3   SMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIV 62

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
            RVR+RRGGR+   P      K     V +   +++ + +AEERA RK   + VLNSYW+
Sbjct: 63  VRVRIRRGGRRATRPNK--GRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWV 120

Query: 122 NEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLH 181
            ED  YK+FEVILVD  H AI++DP+++W+     + R  RGLTSAG+K RGLR KG   
Sbjct: 121 GEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKGRGA 178

Query: 182 HKARPSRRATWKRNN 196
            K RPS RA +++  
Sbjct: 179 EKVRPSLRANFRKKR 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1vqom1	194	d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeo	2e-97

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 194

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  278 bits (714), Expect = 2e-97
 Identities = 82/193 (42%), Positives = 113/193 (58%), Gaps = 2/193 (1%)

Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
            AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQG +V
Sbjct: 3   SAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIV 62

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
            RV VR+G  ++   K     +   QGVT++  ++  + VAEERA R    LRVLNSY +
Sbjct: 63  ARVSVRKGSARKRRHKA--GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSV 120

Query: 122 NEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLH 181
            +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG   
Sbjct: 121 GQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGS 180

Query: 182 HKARPSRRATWKR 194
            K RPS R+   +
Sbjct: 181 EKTRPSLRSNGGK 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1vqom1	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0
d1ffki_	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=0  Score=664.23  Aligned_cols=193  Identities=42%  Similarity=0.696  Sum_probs=190.6

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             93579999997313604799999999998831885577089998057775145644436999997663498997557865
Q 028730            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (204)
Q Consensus         1 mg~y~yi~e~wkk~~s~~~~~l~r~R~~e~Rq~~~i~Rv~rPTR~dkAR~LGYKAKQG~Vi~RvRVRrGgrkr~~pkg~~   80 (204)
                      +|||+||+|+|++||||+|+||+|+|||||||+|+|+|+++|||||+||+|||||||||||||||||+||+++|+|+++ 
T Consensus         2 ~saY~Yv~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Ri~rPtR~DrAR~LGYKAKqG~vi~RvRVRrGg~kr~~~kg~-   80 (194)
T d1vqom1           2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG-   80 (194)
T ss_dssp             CCHHHHHHHHTTCTTSHHHHHHHHHHHHHHTTSCSEEEESSCTTHHHHHHTTCCSSTTEEEEEEEEECSSCCCCCCSSC-
T ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCC-
T ss_conf             2189999999835213789999999999986468436657999656787657644772899999871178889987899-


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             58864445100255531367999875200499212202641149981168999843787222469998400157755600
Q 028730           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE  160 (204)
Q Consensus        81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVDP~H~aIr~Dp~~~WI~~~~hk~Re  160 (204)
                       ++|++||||+||+++|||+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||
T Consensus        81 -~kpK~~Gv~~lk~~~~lq~iAEeRvgrk~~nLrVLNSYwV~qDg~yk~yEVILvDp~h~aIr~D~~~nWI~~~~hk~R~  159 (194)
T d1vqom1          81 -RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRV  159 (194)
T ss_dssp             -CCGGGCCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEECSSEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGG
T ss_pred             -CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             -9887676345374510789999985176888474313676588860478998855888110128764412475446601


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf             00875333223587898876554689820111046
Q 028730          161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN  195 (204)
Q Consensus       161 ~RGlTsagkk~RGlr~kG~~~~k~~~S~ra~w~r~  195 (204)
                      ||||||||+|+|||++|||+++|++||.+|||++.
T Consensus       160 ~RGlTSAGkk~RGLr~kG~~~~k~rpS~ran~~r~  194 (194)
T d1vqom1         160 FRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGKA  194 (194)
T ss_dssp             GGTCSHHHHHHTTCSCSSTTCTTTSSCTTTTTTCC
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             12775434334777889987675784411256799

>d1ffki_ d.12.1.2 (I:) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=0  Score=656.31  Aligned_cols=193  Identities=45%  Similarity=0.772  Sum_probs=190.0

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             93579999997313604799999999998831885577089998057775145644436999997663498997557865
Q 028730            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (204)
Q Consensus         1 mg~y~yi~e~wkk~~s~~~~~l~r~R~~e~Rq~~~i~Rv~rPTR~dkAR~LGYKAKQG~Vi~RvRVRrGgrkr~~pkg~~   80 (204)
                      .|||+||+|+|++||||+|+||+++|||||||+|+||||++|||||+||+|||||||||||||||||+||+++|+|+++ 
T Consensus         2 ~s~Y~yv~e~wkkkqsd~~~~l~r~R~~e~R~~~~i~Ri~rPTR~DrAR~LGYKAKQG~vi~RvRVRrGgrkr~~~~~g-   80 (194)
T d1ffki_           2 KSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG-   80 (194)
T ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC-
T ss_conf             5488999999844124889999999999986467526657999754787657744761899999862488768887798-


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             58864445100255531367999875200499212202641149981168999843787222469998400157755600
Q 028730           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE  160 (204)
Q Consensus        81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVDP~H~aIr~Dp~~~WI~~~~hk~Re  160 (204)
                       ++|++||||++++++|||+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+  |||||
T Consensus        81 -rrpk~~gv~~lk~~kslq~iAEERv~rk~~nLrVLNSYWV~qDg~~k~yEVIlVDp~h~aIr~D~~~nWI~~--~k~R~  157 (194)
T d1ffki_          81 -RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRV  157 (194)
T ss_pred             -CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCEEECCCCCEEEC--CCCCH
T ss_conf             -558777601557453178999998626477747430079747886267899973689822036887674045--77600


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCE
Q ss_conf             0087533322358789887655468982011104661
Q 028730          161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT  197 (204)
Q Consensus       161 ~RGlTsagkk~RGlr~kG~~~~k~~~S~ra~w~r~n~  197 (204)
                      ||||||||+|+|||+++|+++++++||.+|+|+++|-
T Consensus       158 ~RGlTSAGkk~RGL~~kg~~~~k~rpS~ra~~rr~nk  194 (194)
T d1ffki_         158 YRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKKRR  194 (194)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf             1277642223478888998867679615665653069