Citrus Sinensis ID: 028762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEcccEEEEEEEEEccEEEEEEccEEEEcccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHccccccccEEEEEEEccccEEEEEcccccEccccccEEEEEcccEHHcHHHHHHHHHHHHHccccccccccccccccccHHccHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MTAQSQEELLAAHLEEqklnpdepvveddddedddeededddkdeddvegkgdgsgrskqsrSEKKSRKAMLKLgmkpipgvsrvtvkkskNILFviskpdvfksptsdtyivFGEAKIEDLSSQLQTQAAeqfkvpppntgnvaskpessamaqddeevdetgvepkdIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN
Flexible Loop (DISEMBL)
MTAQSQEELLAAHleeqklnpdepvveddddedddeededddkdeddvegkgdgsgrskqsrsekksrkamlklgmkpipgvsrvtvkksknilfviskpdvfksptSDTYIVFGEAKIEDLSSQLQTQAAEqfkvpppntgnvasKPESSAMAQDDEEVDETGVEPKDIELVmtqagvprsravkalkaadgdiVSAIMELTN
Low Complexity Region (SEG)
MTaqsqeellaahleeqKLNpdepvveddddedddeededddkdeddvegkgdgSGrskqsrsekksrkAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN
Disordered region (IsUnstruct)
********************************************************************************GVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKI*************************************************************************************
Disordered Region (DISOPRED)
*************************************************************************LGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAK**********************************************VEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT*
Disordered Region (DISEMBL)
MTAQSQEELLAAHLEEQKLNPD***********************************************AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTG**********************VEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN
Disordered Region (DISPRO)
****************************************************************KK*RK*MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQ*****************************TGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9M612	205	Nascent polypeptide-assoc	N/A	no	0.921	0.917	0.755	3e-66
Q9LHG9	203	Nascent polypeptide-assoc	yes	no	0.965	0.970	0.751	8e-60
Q6ICZ8	204	Nascent polypeptide-assoc	no	no	0.965	0.965	0.706	6e-58
Q94JX9	217	Nascent polypeptide-assoc	no	no	0.897	0.843	0.635	4e-54
Q9SZY1	212	Nascent polypeptide-assoc	no	no	0.700	0.674	0.703	4e-49
Q8LGC6	209	Nascent polypeptide-assoc	no	no	0.715	0.698	0.657	4e-48
Q8AWF2	215	Nascent polypeptide-assoc	yes	no	0.720	0.683	0.651	4e-45
Q8JIU7	215	Nascent polypeptide-assoc	yes	no	0.720	0.683	0.637	7e-44
Q9BZK3	213	Putative nascent polypept	yes	no	0.715	0.685	0.604	1e-43
Q68F90	214	Nascent polypeptide-assoc	yes	no	0.720	0.686	0.637	2e-43

>sp|Q9M612|NACA_PINTA Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1

 Score =  251 bits (640), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 148/196 (75%), Positives = 168/196 (85%), Gaps = 8/196 (4%)

Query: 11  AAHLEEQKL-NPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQSRSEKKSRK 69
           AA LE+Q+L + DEP++EDD+D+DD+E+D     DEDD +G+  G G+SKQSRSEKK RK
Sbjct: 16  AAKLEQQELEHSDEPILEDDEDDDDEEDDN----DEDDAQGEQGGEGKSKQSRSEKKCRK 71

Query: 70  AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
           AMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPTSDTYI FGEAKIEDLSSQLQTQ
Sbjct: 72  AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQ 131

Query: 130 AAEQFKVPPPNTGNVASKPESSAMAQDDE-EVDETGVEPKDIELVMTQAGVPRSRAVKAL 188
           AAEQFK   PN  +V  KPESS  AQ+DE EVD+TGVEPKDIELVMTQAGV R++AVKAL
Sbjct: 132 AAEQFKA--PNLSHVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKAL 189

Query: 189 KAADGDIVSAIMELTN 204
           KAADGDIVSAIM+LT 
Sbjct: 190 KAADGDIVSAIMDLTT 205

May promote appropriate targeting of ribosome-nascent polypeptide complexes.
Pinus taeda (taxid: 3352)

>sp|Q9LHG9|NACA1_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1

 Score =  229 bits (585), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 151/201 (75%), Positives = 170/201 (84%), Gaps = 4/201 (1%)

Query: 6   QEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQSRSEK 65
           ++E+LAA LEEQK++ D+P VEDDDD +DD+ D+DD  D++     G+  G+SKQSRSEK
Sbjct: 5   EKEILAAKLEEQKIDLDKPEVEDDDDNEDDDSDDDDKDDDEADGLDGEAGGKSKQSRSEK 64

Query: 66  KSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 125
           KSRKAMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQ
Sbjct: 65  KSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQ 124

Query: 126 LQTQAAEQFKVPPPNTGNVASKPESSAMA--QDDEEVDETGVEPKDIELVMTQAGVPRSR 183
           +Q+QAAEQFK   P+  NV SK ESS+ A  QDDEEVDE GVEPKDIELVMTQAGV R  
Sbjct: 125 IQSQAAEQFKA--PDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPN 182

Query: 184 AVKALKAADGDIVSAIMELTN 204
           AVKALKAADGDIVSAIMELT 
Sbjct: 183 AVKALKAADGDIVSAIMELTT 203

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ICZ8|NACA3_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1

 Score =  223 bits (569), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 149/211 (70%), Positives = 169/211 (80%), Gaps = 14/211 (6%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQ 60
           MTA+ + EL AA LEEQK++ D+P VEDDDD D+D+ ++DD+ +  D    G+  GRSKQ
Sbjct: 1   MTAEQKVEL-AAKLEEQKIDLDKPEVEDDDDNDEDDSEDDDEAEGHD----GEAGGRSKQ 55

Query: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 120
           SRSEKKSRKAMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIE
Sbjct: 56  SRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIE 115

Query: 121 DLSSQLQTQAAEQFKVPPPNTGNVASKPE-------SSAMAQDDEEVDETGVEPKDIELV 173
           DLSSQLQ+QAAEQFK   PN  NV S+ E       ++    DDEEVDE GVEPKDIELV
Sbjct: 116 DLSSQLQSQAAEQFKA--PNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELV 173

Query: 174 MTQAGVPRSRAVKALKAADGDIVSAIMELTN 204
           MTQAGV + RAVKALK A+GDIVSAIMELT 
Sbjct: 174 MTQAGVSKPRAVKALKLANGDIVSAIMELTT 204

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JX9|NACA2_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 158/195 (81%), Gaps = 12/195 (6%)

Query: 16  EQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQSRSEKKSRKAMLKLG 75
           E+KL  DEP+VED  D++DD++D+++++D+D    +G  SG SKQSRSEKKSRKAMLKLG
Sbjct: 29  EKKLQTDEPIVEDVKDDEDDDDDDEEEEDDD---AQGV-SGSSKQSRSEKKSRKAMLKLG 84

Query: 76  MKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFK 135
           MKP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++FGEAKIEDLSSQLQTQAA+QF+
Sbjct: 85  MKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFR 144

Query: 136 VPPPNTGNVASKPESSAMAQDDE------EVDETGVEPKDIELVMTQAGVPRSRAVKALK 189
           +P    G  + + E+S    + +      E+DETGVE +DI+LVMTQAGV RS+AVKALK
Sbjct: 145 MP--EIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALK 202

Query: 190 AADGDIVSAIMELTN 204
           + DGDIVSAIMELT 
Sbjct: 203 SHDGDIVSAIMELTT 217

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY1|NACA4_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1

 Score =  194 bits (492), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 129/155 (83%), Gaps = 12/155 (7%)

Query: 58  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEA 117
           SKQSRSEKKSRKAMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP S+TY++FGEA
Sbjct: 62  SKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEA 121

Query: 118 KIEDLSSQLQTQAAEQFKVP-----PPNTGNVASKPESSAMAQ---DDEEVDETGVEPKD 169
           KI+D+SSQLQ QAA++FK+P      PNT       E++ +AQ   DDE+VDETGVE KD
Sbjct: 122 KIDDMSSQLQAQAAQRFKMPDVASMIPNTDG----SEAATVAQEEEDDEDVDETGVEAKD 177

Query: 170 IELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN 204
           I+LVMTQAGV R +AVKALK ++GDIVSAIMELT 
Sbjct: 178 IDLVMTQAGVSRPKAVKALKESNGDIVSAIMELTT 212

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGC6|NACA5_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2

 Score =  190 bits (483), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 129/152 (84%), Gaps = 6/152 (3%)

Query: 58  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEA 117
           +KQSRSEKKSRKA+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP ++TY++FGEA
Sbjct: 59  AKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEA 118

Query: 118 KIEDLSSQLQTQAAEQFKVP-----PPNTGNVASKPESSAMAQDDEEVDETGVEPKDIEL 172
           K++DLSSQLQTQAA++FK+P      PN G+ A+     A  +D+++VD+TGVE +DI+L
Sbjct: 119 KVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAP-LAEEEDEDDVDDTGVEARDIDL 177

Query: 173 VMTQAGVPRSRAVKALKAADGDIVSAIMELTN 204
           VMTQAGV +++AV ALKA DGDIVSAIMELT 
Sbjct: 178 VMTQAGVSKAKAVSALKANDGDIVSAIMELTT 209

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 120/149 (80%), Gaps = 2/149 (1%)

Query: 57  RSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGE 116
           ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGE
Sbjct: 66  KAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGE 125

Query: 117 AKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAM--AQDDEEVDETGVEPKDIELVM 174
           AKIEDLS Q Q  AAE+FKVP     NV    ++  +    ++EEVDETGVE KDIELVM
Sbjct: 126 AKIEDLSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVM 185

Query: 175 TQAGVPRSRAVKALKAADGDIVSAIMELT 203
           +QA V R++AV+ALK  + DIV+AIMELT
Sbjct: 186 SQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Oreochromis niloticus (taxid: 8128)

>sp|Q8JIU7|NACA_DANRE Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 119/149 (79%), Gaps = 2/149 (1%)

Query: 57  RSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGE 116
           ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGE
Sbjct: 66  KAKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGE 125

Query: 117 AKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAM--AQDDEEVDETGVEPKDIELVM 174
           AKIEDLS Q Q  AAE+FKV      N+    ++  +    ++EEVDETGVE KDIELVM
Sbjct: 126 AKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVM 185

Query: 175 TQAGVPRSRAVKALKAADGDIVSAIMELT 203
           +QA V R++AV+ALK  + DIV+AIMELT
Sbjct: 186 SQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Danio rerio (taxid: 7955)

>sp|Q9BZK3|NACP1_HUMAN Putative nascent polypeptide-associated complex subunit alpha-like protein OS=Homo sapiens GN=NACAP1 PE=5 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 118/149 (79%), Gaps = 3/149 (2%)

Query: 57  RSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGE 116
           ++KQ RSEKK+RKA  KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTY+VFGE
Sbjct: 65  KAKQRRSEKKARKARFKLGLQQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYMVFGE 124

Query: 117 AKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQ--DDEEVDETGVEPKDIELVM 174
           AKIEDLS + Q  AAE+FKV      N+    ++  + +  +DEEVDETGVE KDIELV+
Sbjct: 125 AKIEDLSQEAQLAAAEKFKVQGEAVSNIQENTQTPTVQEGSEDEEVDETGVEIKDIELVL 184

Query: 175 TQAGVPRSRAVKALKAADGDIVSAIMELT 203
           +QA V  ++AV+ALK ++ DIV+AIMELT
Sbjct: 185 SQANVWGAKAVRALKNSN-DIVNAIMELT 212

Homo sapiens (taxid: 9606)

>sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 118/149 (79%), Gaps = 2/149 (1%)

Query: 57  RSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGE 116
           ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGE
Sbjct: 65  KAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGE 124

Query: 117 AKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAM--AQDDEEVDETGVEPKDIELVM 174
           AKIEDLS Q Q  AAE+FKV      N+    ++  +    ++EEVDETGVE KDIELVM
Sbjct: 125 AKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVM 184

Query: 175 TQAGVPRSRAVKALKAADGDIVSAIMELT 203
           +QA V R++AV+ALK    DIV+AIMELT
Sbjct: 185 SQANVSRAKAVRALKNNSNDIVNAIMELT 213

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
359481448	202	PREDICTED: nascent polypeptide-associate	0.990	1.0	0.857	3e-82
449453141	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.867	1e-80
449529584	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.857	5e-80
449453139	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.862	5e-80
225470846	202	PREDICTED: nascent polypeptide-associate	0.990	1.0	0.828	9e-80
359481450	198	PREDICTED: nascent polypeptide-associate	0.970	1.0	0.843	1e-78
357509189	203	Nascent polypeptide-associated complex s	0.990	0.995	0.804	3e-78
170773910	199	nascent polypeptide associated complex a	0.975	1.0	0.803	4e-78
217075454	203	unknown [Medicago truncatula]	0.990	0.995	0.804	4e-78
351722347	203	uncharacterized protein LOC100500056 [Gl	0.990	0.995	0.809	7e-78

>gi|359481448|ref|XP_003632619.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like isoform 2 [Vitis vinifera]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/204 (85%), Positives = 192/204 (94%), Gaps = 2/204 (0%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQ 60
           MTAQ+QEELLAAHLEEQK+NPDEPVVED+DDEDDD++D+DDDKDEDD EG+ DGSGRSKQ
Sbjct: 1   MTAQTQEELLAAHLEEQKINPDEPVVEDEDDEDDDDDDDDDDKDEDDAEGQDDGSGRSKQ 60

Query: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 120
           SRSEKKSRKAMLKLGMK IPGVSRVT+KKSKNILFVISKPDVFKSPTSDTY++FGEAKIE
Sbjct: 61  SRSEKKSRKAMLKLGMKTIPGVSRVTIKKSKNILFVISKPDVFKSPTSDTYVIFGEAKIE 120

Query: 121 DLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVP 180
           DLSSQLQTQAAEQFK   PN    A++PE++A+ QDDEEVDETGVEPKDI+LVMTQAGV 
Sbjct: 121 DLSSQLQTQAAEQFKA--PNVHPAAAQPETAAVVQDDEEVDETGVEPKDIDLVMTQAGVS 178

Query: 181 RSRAVKALKAADGDIVSAIMELTN 204
           RS+AVKALKAADGDIVSAIMELTN
Sbjct: 179 RSKAVKALKAADGDIVSAIMELTN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453141|ref|XP_004144317.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus] gi|449529586|ref|XP_004171779.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/204 (86%), Positives = 187/204 (91%), Gaps = 4/204 (1%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQ 60
           MTAQ++EELLAA LEEQK+N DEPV+EDDDD++DD  DEDDDKDEDDVEG G+ SGRSKQ
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDEDD--DEDDDKDEDDVEGHGEASGRSKQ 58

Query: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 120
           SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE
Sbjct: 59  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 118

Query: 121 DLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVP 180
           DLSSQLQTQAAEQFK   PN  N+ SKPE S +AQDDE VDETGVEPKDIELVMTQAGV 
Sbjct: 119 DLSSQLQTQAAEQFKA--PNLSNLTSKPEPSTVAQDDEVVDETGVEPKDIELVMTQAGVS 176

Query: 181 RSRAVKALKAADGDIVSAIMELTN 204
           R RAVKALKAA+GDIVSAIMELTN
Sbjct: 177 RPRAVKALKAAEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529584|ref|XP_004171778.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 175/204 (85%), Positives = 186/204 (91%), Gaps = 4/204 (1%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQ 60
           MTAQ++EELLAA LEEQK+N DEPV+EDDDD+DDD  DEDDDKD+DDVEG G+ SGRSKQ
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDDDD--DEDDDKDDDDVEGHGEASGRSKQ 58

Query: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 120
           SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE
Sbjct: 59  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 118

Query: 121 DLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVP 180
           DLSSQLQTQAAEQFK   PN  N+ SKPE S + QDDEEVDETGVEPKDIELVMTQAGV 
Sbjct: 119 DLSSQLQTQAAEQFKA--PNLSNLTSKPEPSTVVQDDEEVDETGVEPKDIELVMTQAGVS 176

Query: 181 RSRAVKALKAADGDIVSAIMELTN 204
           R +AVKALKA +GDIVSAIMELTN
Sbjct: 177 RPKAVKALKATEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453139|ref|XP_004144316.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 176/204 (86%), Positives = 186/204 (91%), Gaps = 4/204 (1%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQ 60
           MTAQ++EELLAA LEEQK+N DEPV+EDDDD+DDD  DEDDDKDEDDVEG G+ SGRSKQ
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDDDD--DEDDDKDEDDVEGHGEASGRSKQ 58

Query: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 120
           SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE
Sbjct: 59  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 118

Query: 121 DLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVP 180
           DLSSQLQTQAAEQFK   PN  N+ SKPE S + QDDEEVDETGVEPKDIELVMTQAGV 
Sbjct: 119 DLSSQLQTQAAEQFKA--PNLSNLTSKPEPSTVVQDDEEVDETGVEPKDIELVMTQAGVS 176

Query: 181 RSRAVKALKAADGDIVSAIMELTN 204
           R +AVKALKA +GDIVSAIMELTN
Sbjct: 177 RPKAVKALKATEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470846|ref|XP_002266597.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like [Vitis vinifera] gi|298205090|emb|CBI40611.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (771), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 169/204 (82%), Positives = 191/204 (93%), Gaps = 2/204 (0%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQ 60
           MTAQ+QEELLAAHLE+QK+NPDEPVVE++DD+DD+++++D D+D+ + E  GD SGRSKQ
Sbjct: 1   MTAQTQEELLAAHLEQQKINPDEPVVEEEDDDDDEDDEDDKDEDDVEGEQGGDASGRSKQ 60

Query: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 120
           SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTY++FGEAKIE
Sbjct: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEAKIE 120

Query: 121 DLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVP 180
           DLSSQLQTQAAEQFK   P+  NV +KPE+S+MAQDDE+VDETGVEPKDIELVMTQAGV 
Sbjct: 121 DLSSQLQTQAAEQFKA--PDLSNVIAKPEASSMAQDDEDVDETGVEPKDIELVMTQAGVS 178

Query: 181 RSRAVKALKAADGDIVSAIMELTN 204
           RS+AVKALKAADGDIVSAIMELTN
Sbjct: 179 RSKAVKALKAADGDIVSAIMELTN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481450|ref|XP_002283581.2| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like isoform 1 [Vitis vinifera]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/204 (84%), Positives = 188/204 (92%), Gaps = 6/204 (2%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQ 60
           MTAQ+QEELLAAHLEEQK+NPDEPVVED+DDEDDD++D+DDDKDEDD EG     GRSKQ
Sbjct: 1   MTAQTQEELLAAHLEEQKINPDEPVVEDEDDEDDDDDDDDDDKDEDDAEG----DGRSKQ 56

Query: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 120
           SRSEKKSRKAMLKLGMK IPGVSRVT+KKSKNILFVISKPDVFKSPTSDTY++FGEAKIE
Sbjct: 57  SRSEKKSRKAMLKLGMKTIPGVSRVTIKKSKNILFVISKPDVFKSPTSDTYVIFGEAKIE 116

Query: 121 DLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVP 180
           DLSSQLQTQAAEQFK   PN    A++PE++A+ QDDEEVDETGVEPKDI+LVMTQAGV 
Sbjct: 117 DLSSQLQTQAAEQFKA--PNVHPAAAQPETAAVVQDDEEVDETGVEPKDIDLVMTQAGVS 174

Query: 181 RSRAVKALKAADGDIVSAIMELTN 204
           RS+AVKALKAADGDIVSAIMELTN
Sbjct: 175 RSKAVKALKAADGDIVSAIMELTN 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509189|ref|XP_003624883.1| Nascent polypeptide-associated complex subunit alpha-like protein [Medicago truncatula] gi|355499898|gb|AES81101.1| Nascent polypeptide-associated complex subunit alpha-like protein [Medicago truncatula] gi|388492254|gb|AFK34193.1| unknown [Medicago truncatula]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 165/205 (80%), Positives = 190/205 (92%), Gaps = 3/205 (1%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEG-KGDGSGRSK 59
           MTAQ+QEELLAAHLE+QK++ DEPVVEDDDDEDD+++++DDD+D+D+ EG +GD SGRSK
Sbjct: 1   MTAQTQEELLAAHLEQQKIHHDEPVVEDDDDEDDEDDEDDDDEDDDNAEGFEGDASGRSK 60

Query: 60  QSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKI 119
           Q+RSEKKSRKAMLKLGMK + GVSRVT+KKSKNILFVISKPDVFKSPTSDTYI+FGEAKI
Sbjct: 61  QTRSEKKSRKAMLKLGMKAVTGVSRVTIKKSKNILFVISKPDVFKSPTSDTYIIFGEAKI 120

Query: 120 EDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGV 179
           EDLSSQLQTQAAEQFK   PN  N  +KPESS +A +DE+VDETGV+PKDIELV+TQAGV
Sbjct: 121 EDLSSQLQTQAAEQFKA--PNLTNAGAKPESSGIAPEDEDVDETGVDPKDIELVVTQAGV 178

Query: 180 PRSRAVKALKAADGDIVSAIMELTN 204
           PRSRAVKALKAA+GDIV+AIMELTN
Sbjct: 179 PRSRAVKALKAANGDIVAAIMELTN 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170773910|gb|ACB32231.1| nascent polypeptide associated complex alpha [Solanum chacoense]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/204 (80%), Positives = 185/204 (90%), Gaps = 5/204 (2%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEGKGDGSGRSKQ 60
           MTAQSQEELLAAHLE+QKL  + P++ED++D+DDD++DE DD D +++   GDGSGRSKQ
Sbjct: 1   MTAQSQEELLAAHLEQQKLESEVPIIEDEEDDDDDDDDEKDDDDAEEL---GDGSGRSKQ 57

Query: 61  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIE 120
           SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIE
Sbjct: 58  SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIE 117

Query: 121 DLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVP 180
           DLSSQLQ+QAAEQFK   PN  NV SKPE S +AQDDE+VDETGVEPKDIELVMTQAGV 
Sbjct: 118 DLSSQLQSQAAEQFKA--PNLSNVISKPEPSTVAQDDEDVDETGVEPKDIELVMTQAGVS 175

Query: 181 RSRAVKALKAADGDIVSAIMELTN 204
           R++AVKAL+AADGDIVSAIME+TN
Sbjct: 176 RAKAVKALRAADGDIVSAIMEITN 199

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075454|gb|ACJ86087.1| unknown [Medicago truncatula]

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 165/205 (80%), Positives = 188/205 (91%), Gaps = 3/205 (1%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEG-KGDGSGRSK 59
           MT Q+QEELLAAHLE+QK++ DEPVVEDDDDEDD+++++DDD+D+D+ EG +GD SGRSK
Sbjct: 1   MTVQTQEELLAAHLEQQKIHHDEPVVEDDDDEDDEDDEDDDDEDDDNAEGFEGDASGRSK 60

Query: 60  QSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKI 119
           Q+RSEKKSRKAMLKLGMK + GVSRVT+KKSKNILFVISKPDVFKSPTSDTYI+FGEAKI
Sbjct: 61  QTRSEKKSRKAMLKLGMKAVTGVSRVTIKKSKNILFVISKPDVFKSPTSDTYIIFGEAKI 120

Query: 120 EDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGV 179
           EDLSSQLQTQAAEQFK   PN  N  +KPESS +A  DE+VDETGVEPKDIELV+TQAGV
Sbjct: 121 EDLSSQLQTQAAEQFKA--PNLTNAGAKPESSGIAPKDEDVDETGVEPKDIELVVTQAGV 178

Query: 180 PRSRAVKALKAADGDIVSAIMELTN 204
           PRSRAVKALKAA+GDIV+AIMELTN
Sbjct: 179 PRSRAVKALKAANGDIVAAIMELTN 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722347|ref|NP_001236217.1| uncharacterized protein LOC100500056 [Glycine max] gi|255628877|gb|ACU14783.1| unknown [Glycine max]

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 166/205 (80%), Positives = 187/205 (91%), Gaps = 3/205 (1%)

Query: 1   MTAQSQEELLAAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVEG-KGDGSGRSK 59
           MT Q+QEELLA HLE+QK++ DEPVVEDD+DE++D++D++DDKD+D  +G +GD SGRSK
Sbjct: 1   MTTQTQEELLAQHLEQQKIHDDEPVVEDDNDEEEDDDDDEDDKDDDHADGLEGDASGRSK 60

Query: 60  QSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKI 119
           Q+RSEKKSRKAMLKLGMKP+ GVSRVTVKKSKNILFVISKPDVFKSPTSDTYI+FGEAKI
Sbjct: 61  QTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKI 120

Query: 120 EDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGV 179
           EDLSSQLQTQAAEQFK   PN  NV SKPESSA+AQDDEEVDE GV+PKDIELVMTQAGV
Sbjct: 121 EDLSSQLQTQAAEQFKA--PNLSNVGSKPESSAVAQDDEEVDEAGVDPKDIELVMTQAGV 178

Query: 180 PRSRAVKALKAADGDIVSAIMELTN 204
            R +AVKALKAA GDIV+AIMELTN
Sbjct: 179 SRPKAVKALKAAGGDIVAAIMELTN 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2092462	203	AT3G12390 [Arabidopsis thalian	0.647	0.650	0.838	1.2e-51
TAIR|locus:2159093	204	NACA3 "AT5G13850" [Arabidopsis	0.647	0.647	0.787	4.1e-49
TAIR|locus:2114703	217	NACA2 "AT3G49470" [Arabidopsis	0.720	0.677	0.632	4.4e-45
TAIR|locus:2127681	212	AT4G10480 "AT4G10480" [Arabido	0.637	0.613	0.683	1.3e-43
TAIR|locus:2206975	209	NACA5 "AT1G33040" [Arabidopsis	0.651	0.636	0.640	2.5e-42
UNIPROTKB|Q5E9A1	215	NACA "Nascent polypeptide-asso	0.656	0.623	0.625	1.6e-38
UNIPROTKB|Q13765	215	NACA "Nascent polypeptide-asso	0.656	0.623	0.625	1.6e-38
MGI|MGI:106095	215	Naca "nascent polypeptide-asso	0.656	0.623	0.625	1.6e-38
UNIPROTKB|H9KYU8	192	NACA2 "Uncharacterized protein	0.651	0.692	0.614	2.4e-37
FB|FBgn0086904	217	Nacalpha "Nascent polypeptide	0.651	0.612	0.617	3e-37

TAIR|locus:2092462 AT3G12390 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 114/136 (83%), Positives = 120/136 (88%)

Query:    70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQ+Q+Q
Sbjct:    69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQ 128

Query:   130 AAEQFKVPPPNTGNVASKPESS--AMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKA 187
             AAEQFK P  +  NV SK ESS  A+ QDDEEVDE GVEPKDIELVMTQAGV R  AVKA
Sbjct:   129 AAEQFKAP--DLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKA 186

Query:   188 LKAADGDIVSAIMELT 203
             LKAADGDIVSAIMELT
Sbjct:   187 LKAADGDIVSAIMELT 202

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2159093 NACA3 "AT5G13850" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 111/141 (78%), Positives = 119/141 (84%)

Query:    70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQLQ+Q
Sbjct:    65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQ 124

Query:   130 AAEQFKVPPPNTGNVASKPESSAMA-------QDDEEVDETGVEPKDIELVMTQAGVPRS 182
             AAEQFK P  N  NV S+ E+S+ A        DDEEVDE GVEPKDIELVMTQAGV + 
Sbjct:   125 AAEQFKAP--NLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKP 182

Query:   183 RAVKALKAADGDIVSAIMELT 203
             RAVKALK A+GDIVSAIMELT
Sbjct:   183 RAVKALKLANGDIVSAIMELT 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0051604 "protein maturation" evidence=RCA

TAIR|locus:2114703 NACA2 "AT3G49470" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 98/155 (63%), Positives = 120/155 (77%)

Query:    55 SGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVF 114
             SG             AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++F
Sbjct:    64 SGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIF 123

Query:   115 GEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSA------MAQDDEEVDETGVEPK 168
             GEAKIEDLSSQLQTQAA+QF++P    G  + + E+S       + +D+EE+DETGVE +
Sbjct:   124 GEAKIEDLSSQLQTQAAQQFRMP--EIGATSQRAEASTATVEAQVEEDEEEIDETGVEAR 181

Query:   169 DIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 203
             DI+LVMTQAGV RS+AVKALK+ DGDIVSAIMELT
Sbjct:   182 DIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2127681 AT4G10480 "AT4G10480" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 97/142 (68%), Positives = 117/142 (82%)

Query:    70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
             AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP S+TY++FGEAKI+D+SSQLQ Q
Sbjct:    74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQ 133

Query:   130 AAEQFKVPP-----PNTGNVASKPESSAMAQ---DDEEVDETGVEPKDIELVMTQAGVPR 181
             AA++FK+P      PNT       E++ +AQ   DDE+VDETGVE KDI+LVMTQAGV R
Sbjct:   134 AAQRFKMPDVASMIPNTDG----SEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSR 189

Query:   182 SRAVKALKAADGDIVSAIMELT 203
              +AVKALK ++GDIVSAIMELT
Sbjct:   190 PKAVKALKESNGDIVSAIMELT 211

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2206975 NACA5 "AT1G33040" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 89/139 (64%), Positives = 117/139 (84%)

Query:    70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
             A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP ++TY++FGEAK++DLSSQLQTQ
Sbjct:    71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQ 130

Query:   130 AAEQFKVPP-----PNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRA 184
             AA++FK+P      PN G+ A+     A  +D+++VD+TGVE +DI+LVMTQAGV +++A
Sbjct:   131 AAQRFKMPDVTSMLPNAGSEATMAPL-AEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKA 189

Query:   185 VKALKAADGDIVSAIMELT 203
             V ALKA DGDIVSAIMELT
Sbjct:   190 VSALKANDGDIVSAIMELT 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5E9A1 NACA "Nascent polypeptide-associated complex subunit alpha" [Bos taurus (taxid:9913)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 85/136 (62%), Positives = 106/136 (77%)

Query:    70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   130 AAEQFKVPPPNTGNVASKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKA 187
             AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0005634 "nucleus" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q13765 NACA "Nascent polypeptide-associated complex subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 85/136 (62%), Positives = 106/136 (77%)

Query:    70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   130 AAEQFKVPPPNTGNVASKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKA 187
             AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005854 "nascent polypeptide-associated complex" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003231 "cardiac ventricle development" evidence=ISS

GO:0010664 "negative regulation of striated muscle cell apoptotic process" evidence=ISS

GO:0043403 "skeletal muscle tissue regeneration" evidence=ISS

GO:0048633 "positive regulation of skeletal muscle tissue growth" evidence=ISS

GO:0048742 "regulation of skeletal muscle fiber development" evidence=ISS

GO:0061384 "heart trabecula morphogenesis" evidence=ISS

GO:1901227 "negative regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:1901228 "positive regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:2000138 "positive regulation of cell proliferation involved in heart morphogenesis" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

MGI|MGI:106095 Naca "nascent polypeptide-associated complex alpha polypeptide" [Mus musculus (taxid:10090)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 85/136 (62%), Positives = 106/136 (77%)

Query:    70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   130 AAEQFKVPPPNTGNVASKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKA 187
             AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IDA

UNIPROTKB|H9KYU8 NACA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 83/135 (61%), Positives = 104/135 (77%)

Query:    70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 129
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  
Sbjct:    56 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 115

Query:   130 AAEQFKVPPPNTGNVASKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKA 187
             AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+A
Sbjct:   116 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 175

Query:   188 LKAADGDIVSAIMEL 202
             LK    DIV+AIM L
Sbjct:   176 LKNNSNDIVNAIMAL 190

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IEA

FB|FBgn0086904 Nacalpha "Nascent polypeptide associated complex protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 84/136 (61%), Positives = 106/136 (77%)

Query:    71 MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQA 130
             MLKLG+K I GV+RVT++KSKNILFVI+ PDV+K+P SDTYIVFGEAKIEDLS Q Q  A
Sbjct:    80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAA 139

Query:   131 AEQFKVPPPN--TGNVASKPESSAMAQDDEE-VDETGVEPKDIELVMTQAGVPRSRAVKA 187
             AE+FK P       +V +    + +A++DEE VD+TGV+ KDIELV+TQA   R++A+KA
Sbjct:   140 AEKFKAPEAAGAADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKA 199

Query:   188 LKAADGDIVSAIMELT 203
             LK  + DIV+AIMELT
Sbjct:   200 LKNNNNDIVNAIMELT 215

GO:0048477 "oogenesis" evidence=IMP

GO:0005854 "nascent polypeptide-associated complex" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8JIU7	NACA_DANRE	No assigned EC number	0.6375	0.7205	0.6837	yes	no
Q9LHG9	NACA1_ARATH	No assigned EC number	0.7512	0.9656	0.9704	yes	no
Q94518	NACA_DROME	No assigned EC number	0.6158	0.7156	0.6728	yes	no
Q9BZK3	NACP1_HUMAN	No assigned EC number	0.6040	0.7156	0.6854	yes	no
Q13765	NACA_HUMAN	No assigned EC number	0.6375	0.7205	0.6837	yes	no
Q8AWF2	NACA_ORENI	No assigned EC number	0.6510	0.7205	0.6837	yes	no
Q9M612	NACA_PINTA	No assigned EC number	0.7551	0.9215	0.9170	N/A	no
A2R4V1	NACA_ASPNC	No assigned EC number	0.4336	0.8774	0.8861	yes	no
Q5AYK0	NACA_EMENI	No assigned EC number	0.4471	0.8235	0.8275	yes	no
Q6ICZ8	NACA3_ARATH	No assigned EC number	0.7061	0.9656	0.9656	no	no
Q68F90	NACA_XENTR	No assigned EC number	0.6375	0.7205	0.6869	yes	no
Q60817	NACA_MOUSE	No assigned EC number	0.6375	0.7205	0.6837	yes	no
Q4I2J8	NACA_GIBZE	No assigned EC number	0.4656	0.8235	0.8038	yes	no
Q5E9A1	NACA_BOVIN	No assigned EC number	0.6375	0.7205	0.6837	yes	no
Q86S66	NACA_CAEEL	No assigned EC number	0.5054	0.8872	0.9187	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam01849	50	pfam01849, NAC, NAC domain	2e-17
COG1308	122	COG1308, EGD2, Transcription factor homologous to	1e-12
PRK06369	115	PRK06369, nac, nascent polypeptide-associated comp	5e-09
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	5e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	5e-04
pfam00627	37	pfam00627, UBA, UBA/TS-N domain	0.001

>gnl|CDD|202009 pfam01849, NAC, NAC domain

 Score = 72.1 bits (178), Expect = 2e-17
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 73  KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIED 121
           KLG+KPI GV  VT++K    + V + P V KSP S+TY+VFGEAK +D
Sbjct: 2   KLGLKPIEGVEEVTIRKKDGKVLVFNNPKVQKSPGSNTYVVFGEAKEKD 50

Length = 50

>gnl|CDD|224227 COG1308, EGD2, Transcription factor homologous to NACalpha-BTF3 [Transcription]

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 30/141 (21%)

Query: 65  KKSRKAMLKLG--MKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDL 122
           +K +K M ++G  ++ + GV RV +K       VI  P V                    
Sbjct: 9   RKLKKLMKQMGIDVEELDGVERVIIKLKDTEY-VIENPQVTV------------------ 49

Query: 123 SSQLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRS 182
              ++    + +++    +   A K         ++ VDE+ +  +DI+LVM QAGV R 
Sbjct: 50  ---MKAMGQKTYQISGDPSAKEAVKKPE------EKTVDESDISEEDIKLVMEQAGVSRE 100

Query: 183 RAVKALKAADGDIVSAIMELT 203
            A+KAL+ A GD+  AIM+LT
Sbjct: 101 EAIKALEEAGGDLAEAIMKLT 121

Length = 122

>gnl|CDD|235786 PRK06369, nac, nascent polypeptide-associated complex protein; Reviewed

 Score = 51.8 bits (125), Expect = 5e-09
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 158 EEVDETGVEPK--DIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN 204
           E+  E  VE    DIELV  Q GV    A KAL+ A+GD+  AI++L++
Sbjct: 66  EKEAEKEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS 114

Length = 115

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 19/39 (48%), Positives = 30/39 (76%)

Query: 11  AAHLEEQKLNPDEPVVEDDDDEDDDEEDEDDDKDEDDVE 49
           A HL E+ ++P +  V DDDDED+DE+D+D++ DE++ E
Sbjct: 137 ARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEE 175

Length = 2849

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 25  VVEDDDDEDDDEEDE---DDDKDEDDVEGKGDGSGRSKQSRSEKKSRKAMLK 73
             +DDDDE+ DEEDE     + DEDD +   D    +++   E++ R+   +
Sbjct: 124 EEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWE 175

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain

 Score = 34.7 bits (81), Expect = 0.001
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 165 VEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL 202
           ++ + I+ +    G  R  A KAL+A +G++  A+  L
Sbjct: 1   IDEELIKQLREM-GFSREEAKKALRATNGNVERAVEYL 37

This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG2239	209	consensus Transcription factor containing NAC and	100.0
PRK06369	115	nac nascent polypeptide-associated complex protein	100.0
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	99.98
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	99.97
PF01849	58	NAC: NAC domain; InterPro: IPR002715 Nascent polyp	99.85
KOG2240	162	consensus RNA polymerase II general transcription	98.48
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.68
KOG3450	119	consensus Huntingtin interacting protein HYPK [Gen	97.58
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	95.55
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.1
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	94.82
COG4008	153	Predicted metal-binding transcription factor [Tran	85.74
COG2103	298	Predicted sugar phosphate isomerase [General funct	85.13
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	83.42
PF10411	57	DsbC_N: Disulfide bond isomerase protein N-terminu	83.38

>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]

Probab=100.00  E-value=6.1e-55  Score=369.56  Aligned_cols=150  Identities=67%  Similarity=0.926  Sum_probs=133.1

Q ss_pred             CCCCCcccCcCHHHHHHHHHHcCCccCCCceEEEEEecCceEEEEcCCeEEeeCCCCeEEEeccceecchhhHHHHHHHH
Q 028762           53 DGSGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAE  132 (204)
Q Consensus        53 ~~~~~~k~sr~eKK~rk~mkKLGlk~I~gV~rVtIrk~~~~~fvI~~PdVyKs~gs~tyvVFGEak~~d~s~~~q~~aae  132 (204)
                      .+.+++||||++||.||+|.||||++|+||+||||||++|++|+|++|+|||+|+++||||||+++++|+++|+|.+|++
T Consensus        55 ~~~~~akqsrsekKark~m~KLGlk~v~gV~RVti~ksKNilfvI~kPdVyKsp~sdtYiiFGeakiedls~q~q~~aae  134 (209)
T KOG2239|consen   55 EPVAKAKQSRSEKKARKAMLKLGLKQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIIFGEAKIEDLSQQAQMQAAE  134 (209)
T ss_pred             cchhhhhcchHHHHHHHHHHhcCCccccceeEEEEEecccEEEEecCCceeccCCCceEEEecccccchhHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCC----CCCCcc-cccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028762          133 QFKVPPPNTGNVAS----KPESSA-MAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       133 ~~~~~~~~~~~~~~----~~~~~~-~~~~~eevd~~gi~eeDIeLVm~QagvSr~kAikALke~~GDIV~AIM~Lt~  204 (204)
                      +|+..  ..+....    ...++. +.+++++||++||+.+||+|||+|+||||++|||||++|+||||||||+||+
T Consensus       135 ~fk~~--~~~~~~~~~~~~~~~~~~ee~dEeeVD~tgve~kDIeLVmsQanvSR~kAVkALk~~~~DiVnAIM~LT~  209 (209)
T KOG2239|consen  135 RFKVP--QEAPGLIQEDTSATPPAQEESDEEEVDETGVEAKDIELVMSQANVSRAKAVKALKNNNNDIVNAIMELTK  209 (209)
T ss_pred             hccCC--ccccccccccccCCCccccccchhccCcccCchhhHHHHHHHhhhhHHHHHHHHHhccchHHHHHHHhhC
Confidence            99983  3322221    111222 2255667999999999999999999999999999999999999999999985

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=100.00  E-value=1.7e-38  Score=250.43  Aligned_cols=106  Identities=29%  Similarity=0.490  Sum_probs=97.7

Q ss_pred             cCHHHHHHHHHHcCCc--cCCCceEEEEEecCceEEEEcCCeEE--eeCCCCeEEEeccceecchhhHHHHHHHHHcCCC
Q 028762           62 RSEKKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDVF--KSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVP  137 (204)
Q Consensus        62 r~eKK~rk~mkKLGlk--~I~gV~rVtIrk~~~~~fvI~~PdVy--Ks~gs~tyvVFGEak~~d~s~~~q~~aae~~~~~  137 (204)
                      -||||+||||+||||+  +| ||+||+||+++ ..|||++|+||  ++||++||+|||+++.++++++.           
T Consensus         5 ~nprk~rkmmkkmGik~e~i-~v~~V~Ir~~~-~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~-----------   71 (115)
T PRK06369          5 MNPRKMKQMMKQMGIDVEEL-DVEEVIIRLKD-KEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEK-----------   71 (115)
T ss_pred             CCHHHHHHHHHHcCCcchhc-CeEEEEEEeCC-EEEEEcCCeEEEEecCCCcEEEEEeccEEeeccccc-----------
Confidence            4699999999999999  99 99999999987 89999999999  79999999999999988765420           


Q ss_pred             CCCCCCCCCCCCCcccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028762          138 PPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~eevd~~gi~eeDIeLVm~QagvSr~kAikALke~~GDIV~AIM~Lt~  204 (204)
                                              +++|+++||+|||+||||||++|++||++||||||+|||.|+.
T Consensus        72 ------------------------~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         72 ------------------------EVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             ------------------------cCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence                                    3479999999999999999999999999999999999999974

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=99.98  E-value=6.7e-33  Score=220.03  Aligned_cols=113  Identities=38%  Similarity=0.611  Sum_probs=95.2

Q ss_pred             cCHHHHHHHHHHcCCc--cCCCceEEEEEecCceEEEEcCCeEEe--eCCCCeEEEeccceecchhhHHHHHHHHHcCCC
Q 028762           62 RSEKKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDVFK--SPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVP  137 (204)
Q Consensus        62 r~eKK~rk~mkKLGlk--~I~gV~rVtIrk~~~~~fvI~~PdVyK--s~gs~tyvVFGEak~~d~s~~~q~~aae~~~~~  137 (204)
                      -|+|+|+|+|++|||+  +|+||.||+|++.++. |+|++|.||.  .+|+.||+|.|.+.           +.+     
T Consensus         6 mnpr~l~k~mkqmGi~~eeld~v~~V~i~~kd~e-~vi~~P~V~~~~~~g~~~yqi~g~~~-----------~~~-----   68 (122)
T COG1308           6 MNPRKLKKLMKQMGIDVEELDGVERVIIKLKDTE-YVIENPQVTVMKAMGQKTYQISGDPS-----------AKE-----   68 (122)
T ss_pred             CCHHHHHHHHHHhCCCceeccCceEEEEEcCCce-EEeeCCcEEeehhcchhHHHHhcchh-----------hhc-----
Confidence            5789999999999954  9999999999998875 9999999986  68999999999752           000     


Q ss_pred             CCCCCCCCCCCCCcccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028762          138 PPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~eevd~~gi~eeDIeLVm~QagvSr~kAikALke~~GDIV~AIM~Lt~  204 (204)
                                   .....++..+++++|+++||+|||+||||||++|||||+++|||||+|||+||.
T Consensus        69 -------------~~~~~ee~~~d~~~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~~  122 (122)
T COG1308          69 -------------AVKKPEEKTVDESDISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLTE  122 (122)
T ss_pred             -------------ccccchhcccccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhcC
Confidence                         000122344677789999999999999999999999999999999999999984

>TIGR00264 alpha-NAC-related protein

Probab=99.97  E-value=8e-32  Score=212.61  Aligned_cols=104  Identities=31%  Similarity=0.495  Sum_probs=89.2

Q ss_pred             cCHH---HHHHHHHHcCCc--cCCCceEEEEEecCceEEEEcCCeE--EeeCCCCeEEEeccceecchhhHHHHHHHHHc
Q 028762           62 RSEK---KSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDV--FKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQF  134 (204)
Q Consensus        62 r~eK---K~rk~mkKLGlk--~I~gV~rVtIrk~~~~~fvI~~PdV--yKs~gs~tyvVFGEak~~d~s~~~q~~aae~~  134 (204)
                      -|||   +||+||+||||+  ++. |.+|+|++.++ .|+|++|.|  |+++|+.||+|||+++.+++.+          
T Consensus         6 ~nPr~~~~mkkmMk~MGi~~~eid-V~~ViIk~~~k-~ivf~~p~V~~m~~~G~~tYqI~G~~~~~~~~~----------   73 (116)
T TIGR00264         6 MNPKMLKQMQKMMKQMGMEMEDLD-VEEVIIVFDDE-EWIFENPKVQVMDILGVKTYQITGKPKKEKVEE----------   73 (116)
T ss_pred             CCcccHHHHHHHHHHcCCCccccc-cEEEEEEeCCc-eEEEecCeeEEEecCCcEEEEEecccEEeeccc----------
Confidence            3456   999999999999  476 99999999764 677999987  6789999999999998643210          


Q ss_pred             CCCCCCCCCCCCCCCCcccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028762          135 KVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~eevd~~gi~eeDIeLVm~QagvSr~kAikALke~~GDIV~AIM~Lt~  204 (204)
                                                 ..+|+++||+|||+||||||++|++||++||||||+|||.|+.
T Consensus        74 ---------------------------~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~~  116 (116)
T TIGR00264        74 ---------------------------EEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKLEE  116 (116)
T ss_pred             ---------------------------ccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhhC
Confidence                                       0259999999999999999999999999999999999999973

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation

Probab=99.85  E-value=1.2e-21  Score=136.94  Aligned_cols=58  Identities=53%  Similarity=0.890  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHcCCccCCCceEEEEEecCceEEEEcCCeEEeeCCCCeEEEeccceecc
Q 028762           64 EKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIED  121 (204)
Q Consensus        64 eKK~rk~mkKLGlk~I~gV~rVtIrk~~~~~fvI~~PdVyKs~gs~tyvVFGEak~~d  121 (204)
                      |||+|++|+||||++|+||.||+|++.+|.+|+|++|+||+++|++||+|||+++.+|
T Consensus         1 ekk~~~~l~klgl~~i~~i~eV~i~~~dg~~~~~~~P~V~~~~~~~tyvV~G~~~~~~   58 (58)
T PF01849_consen    1 EKKLQKMLKKLGLKEIPGIEEVTIRKDDGTVFVFNNPEVQKSPGSNTYVVFGEAEEED   58 (58)
T ss_dssp             -------GHHCT-EEETTEEEEEEEETTTEEEEEESEEEEEETTCCEEEEESEEEEEE
T ss_pred             CHHHHHHHHHcCCcccCCcEEEEEEECCceEEEEcCCeEEEcCCCCEEEEEeeeEEcC
Confidence            6999999999999999999999999999999999999999999999999999998764

The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.

>KOG2240 consensus RNA polymerase II general transcription factor BTF3 and related proteins [Transcription]

Probab=98.48  E-value=7.9e-08  Score=80.28  Aligned_cols=64  Identities=27%  Similarity=0.507  Sum_probs=60.3

Q ss_pred             CcCHHHHHHHHHHcCCccCCCceEEEEEecCceEEEEcCCeEEeeCCCCeEEEeccceecchhh
Q 028762           61 SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSS  124 (204)
Q Consensus        61 sr~eKK~rk~mkKLGlk~I~gV~rVtIrk~~~~~fvI~~PdVyKs~gs~tyvVFGEak~~d~s~  124 (204)
                      ..++||++.-|+||++..|+||.+|.|++.++.+++|++|.|.++...+||.|.|.++.+.++.
T Consensus        38 ~~ddkKlqs~lkkl~v~~i~~i~evn~~k~~g~Vihf~~~~vqasl~~nTf~ItG~~~~k~l~E  101 (162)
T KOG2240|consen   38 TADDKKLQSSLKKLGVNNIPGIEEVNMFKNDGTVIHFNNPKVQASLAANTFTITGHAETKQLTE  101 (162)
T ss_pred             CcccchhhhhhhhhccccccchhHhhhccccceeEecCCccccccccCCeEEEecCCcccchhh
Confidence            6789999999999999999999999999999999999999999999999999999999887654

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.68  E-value=4.5e-05  Score=48.44  Aligned_cols=37  Identities=27%  Similarity=0.510  Sum_probs=31.9

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028762          165 VEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       165 i~eeDIeLVm~QagvSr~kAikALke~~GDIV~AIM~L  202 (204)
                      |+++.|..+++. |+|++.|++||+.++||+-.||.-|
T Consensus         1 i~~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    1 IDEEKVQQLMEM-GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             SHHHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            356789999999 9999999999999999999998654

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>KOG3450 consensus Huntingtin interacting protein HYPK [General function prediction only]

Probab=97.58  E-value=4.2e-05  Score=60.54  Aligned_cols=42  Identities=29%  Similarity=0.551  Sum_probs=39.2

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028762          163 TGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       163 ~gi~eeDIeLVm~QagvSr~kAikALke~~GDIV~AIM~Lt~  204 (204)
                      ..|.++||+|||...-+++.-|.+-|++++||+|.|+-.|++
T Consensus        77 V~IkkeDlelImnELei~k~~aer~LrE~~Gdvv~Alral~s  118 (119)
T KOG3450|consen   77 VTIKKEDLELIMNELEISKAAAERSLREHMGDVVEALRALTS  118 (119)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc
Confidence            358899999999999999999999999999999999988864

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=95.55  E-value=0.019  Score=37.56  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028762          168 KDIELVMTQAGVPRSRAVKALKAADGDIVSAIM  200 (204)
Q Consensus       168 eDIeLVm~QagvSr~kAikALke~~GDIV~AIM  200 (204)
                      +-|.-.|+=|||+++.|+..|+.+|+||-.||=
T Consensus         2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~   34 (43)
T PF14555_consen    2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVN   34 (43)
T ss_dssp             HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHH
Confidence            357788999999999999999999999988873

>cd00194 UBA Ubiquitin Associated domain

Probab=95.10  E-value=0.038  Score=34.53  Aligned_cols=32  Identities=31%  Similarity=0.496  Sum_probs=26.0

Q ss_pred             HHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028762          170 IELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       170 IeLVm~QagvSr~kAikALke~~GDIV~AIM~L  202 (204)
                      |..++ ..|.+++.|+.||+.++||+-.|+--|
T Consensus         5 v~~L~-~mGf~~~~~~~AL~~~~~d~~~A~~~L   36 (38)
T cd00194           5 LEQLL-EMGFSREEARKALRATNNNVERAVEWL   36 (38)
T ss_pred             HHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            44444 469999999999999999999987544

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=94.82  E-value=0.049  Score=33.87  Aligned_cols=28  Identities=39%  Similarity=0.552  Sum_probs=23.7

Q ss_pred             HhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028762          175 TQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       175 ~QagvSr~kAikALke~~GDIV~AIM~L  202 (204)
                      ...|.+++.|+.||+.++||+-.|+--|
T Consensus         9 ~~mGf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165        9 LEMGFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             HHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            3459999999999999999998887543

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>COG4008 Predicted metal-binding transcription factor [Transcription]

Probab=85.74  E-value=1.1  Score=36.86  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=27.7

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028762          164 GVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAI  199 (204)
Q Consensus       164 gi~eeDIeLVm~QagvSr~kAikALke~~GDIV~AI  199 (204)
                      .++.+-++.+..-. ||.++|++||.+++ |+..|+
T Consensus       112 ~~~~e~v~v~a~a~-v~~eeAr~aleeag-Dl~~A~  145 (153)
T COG4008         112 EPPVEEVEVLADAF-VTPEEAREALEEAG-DLRTAM  145 (153)
T ss_pred             CCcHHHHHHHHHhc-CCHHHHHHHHHHcC-CHHHHH
Confidence            45666777776655 99999999999996 999985

>COG2103 Predicted sugar phosphate isomerase [General function prediction only]

Probab=85.13  E-value=1.1  Score=40.93  Aligned_cols=39  Identities=26%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028762          164 GVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       164 gi~eeDIeLVm~QagvSr~kAikALke~~GDIV~AIM~L  202 (204)
                      .+-+.-+.+||+-|||+|++|..+|++++|++=-||+-+
T Consensus       231 KL~dRa~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~  269 (298)
T COG2103         231 KLRDRAVRIVMEATGCSAEEAEALLEEAGGNVKLAIVML  269 (298)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHH
Confidence            355677899999999999999999999999998887644

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=83.42  E-value=1.5  Score=39.56  Aligned_cols=38  Identities=37%  Similarity=0.562  Sum_probs=31.6

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028762          165 VEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       165 i~eeDIeLVm~QagvSr~kAikALke~~GDIV~AIM~L  202 (204)
                      +-..=+.+||+-+|||+++|.++|..++|.+=-||+-+
T Consensus       234 l~~ra~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~  271 (299)
T PRK05441        234 LVDRAVRIVMEATGVSREEAEAALEAADGSVKLAIVMI  271 (299)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHH
Confidence            44566788999999999999999999999998887643

>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC

Probab=83.38  E-value=2.5  Score=29.18  Aligned_cols=40  Identities=30%  Similarity=0.687  Sum_probs=24.5

Q ss_pred             HHHHHHc--CCc-------cCCCceEEEEEecCceEEEEcCCeEEeeCCCCeEEEeccc
Q 028762           68 RKAMLKL--GMK-------PIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEA  117 (204)
Q Consensus        68 rk~mkKL--Glk-------~I~gV~rVtIrk~~~~~fvI~~PdVyKs~gs~tyvVFGEa  117 (204)
                      |+.|+++  |++       +++|+-+|++ ++.+ +|       |-++. ..|+|+|..
T Consensus         2 ~~~l~~~~p~~~v~~v~~spi~GlyeV~~-~~~~-i~-------Y~~~d-g~yli~G~l   50 (57)
T PF10411_consen    2 KQALKKAFPGLKVESVSPSPIPGLYEVVL-KGGG-IL-------YVDED-GRYLIQGQL   50 (57)
T ss_dssp             HHHHHCT--T-TCEEEEE-SSTTEEEEEE--TTE-EE-------EEETT-SSEEEES-E
T ss_pred             hhHHHhhcCCCceeEEEcCCCCCeEEEEE-CCCe-EE-------EEcCC-CCEEEEeEE
Confidence            4566666  665       6999999988 4433 32       44443 469999974

The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3mcb_A	54	Crystal Structure Of Nac Domains Of Human Nascent P		1e-19
3lkx_B	54	Human Nac Dimerization Domain Length = 54		5e-19
3mce_A	61	Crystal Structure Of The Nac Domain Of Alpha Subuni		2e-18

>pdb|3MCB|A Chain A, Crystal Structure Of Nac Domains Of Human Nascent Polypeptide- Associated Complex (Nac) Length = 54

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 50/54 (92%)
Query: 70  AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 123
           AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS
Sbjct: 1   AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>pdb|3LKX|B Chain B, Human Nac Dimerization Domain Length = 54

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 48/53 (90%)
Query: 75  GMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 127
           G++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q
Sbjct: 2   GLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQ 54

>pdb|3MCE|A Chain A, Crystal Structure Of The Nac Domain Of Alpha Subunit Of Nascent Polypeptide-Associated Complex(Nac) Length = 61

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 48/51 (94%)
Query: 73  KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 123
           KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS
Sbjct: 10  KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	3e-28
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	4e-27
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	6e-23

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B Length = 54

 Score = 99.8 bits (249), Expect = 3e-28
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 70  AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 123
           AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS
Sbjct: 1   AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens} Length = 61

 Score = 97.1 bits (242), Expect = 4e-27
 Identities = 40/53 (75%), Positives = 48/53 (90%)

Query: 71  MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 123
             KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS
Sbjct: 8   FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Length = 102

 Score = 87.7 bits (217), Expect = 6e-23
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 38/138 (27%)

Query: 67  SRKAMLKLGMKPIPGVSRVTVK-KSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 125
           S    + + MK + GV  V +K K K I+    K +V +     TY V G+A+   L ++
Sbjct: 2   SHMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSLEAE 61

Query: 126 LQTQAAEQFKVPPPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAV 185
           ++                                     +   DIELVM Q G  R  A 
Sbjct: 62  ME-------------------------------------IPEDDIELVMNQTGASREDAT 84

Query: 186 KALKAADGDIVSAIMELT 203
           +AL+   GD+  AIM L+
Sbjct: 85  RALQETGGDLAEAIMRLS 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	93.02
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	92.51
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	89.72
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	87.9
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	87.54
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	86.81
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	85.46
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	83.99
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	81.82

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.064  Score=29.28  Aligned_cols=40  Identities=25%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             9995128788975099989999999981993899885012
Q 028762          164 GVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT  203 (204)
Q Consensus       164 gi~eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~Lt  203 (204)
                      .|+.++|+-.=++||++--...+||.+++||+-.||--|.
T Consensus         2 ~is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr   41 (54)
T d1efub3           2 EITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMR   41 (54)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             4789999999998698799999999983899999999999

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.51  E-value=0.076  Score=28.84  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             512878897509998999999998199389988501
Q 028762          167 PKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       167 eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~L  202 (204)
                      .+-|+.||+=||||.++|+-||-.+|+|+-.||--|
T Consensus        33 ~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~l   68 (91)
T d1wj7a1          33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL   68 (91)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             999999999967889999999851785399999999

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.72  E-value=0.19  Score=26.46  Aligned_cols=39  Identities=28%  Similarity=0.417  Sum_probs=31.7

Q ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             8999512878897509998999999998199389988501
Q 028762          163 TGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       163 ~gi~eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~L  202 (204)
                      ..++++-|..+|+ -|.+|..|++||+.++|++=.||--|
T Consensus        26 ~~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~~L   64 (73)
T d1wiva_          26 SDIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWV   64 (73)
T ss_dssp             CSSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9989999999993-69999999999999299999999999

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.90  E-value=0.35  Score=24.85  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             5128788975099989999999981993899885012
Q 028762          167 PKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT  203 (204)
Q Consensus       167 eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~Lt  203 (204)
                      .+-|+=.=++||++--...+||.++|||+-.||--|.
T Consensus         5 ~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~Lr   41 (56)
T d1xb2b1           5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLH   41 (56)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999998698899999999983899999999999

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.54  E-value=0.34  Score=24.96  Aligned_cols=34  Identities=24%  Similarity=0.139  Sum_probs=29.1

Q ss_pred             CHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             2878897509998999999998199389988501
Q 028762          169 DIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       169 DIeLVm~QagvSrekAvkALke~~GDIV~AIM~L  202 (204)
                      .|+-.=.+||++--...+||.++||||-.||--|
T Consensus         5 lvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~L   38 (52)
T d1aipc1           5 LIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9999999869879999999998399999999999

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.34  Score=24.94  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             48999512878897509998999999998199389988501
Q 028762          162 ETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       162 ~~gi~eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~L  202 (204)
                      .++++++-|.-+|+ -|.+|..|++||+.++|++-.|+--|
T Consensus         5 ~~~~d~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~wL   44 (63)
T d1wjia_           5 SSGVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVL   44 (63)
T ss_dssp             CCSSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             77569999999999-69999999999999198999999999

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.46  E-value=0.55  Score=23.70  Aligned_cols=37  Identities=35%  Similarity=0.522  Sum_probs=29.3

Q ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHH
Q ss_conf             8999512878897509998999999998199-3899885
Q 028762          163 TGVEPKDIELVMTQAGVPRSRAVKALKAADG-DIVSAIM  200 (204)
Q Consensus       163 ~gi~eeDIeLVm~QagvSrekAvkALke~~G-DIV~AIM  200 (204)
                      ++++++-|.-++ .-|.||+.|++||+.++| ++=.|+-
T Consensus         6 s~~d~~~l~~L~-~MGF~~~~a~~AL~~t~n~~~e~A~~   43 (64)
T d1whca_           6 SGAELTALESLI-EMGFPRGRAEKALALTGNQGIEAAMD   43 (64)
T ss_dssp             CCCCCCHHHHHH-TTTCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred             CCCCHHHHHHHH-HCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf             755999999999-95999999999999948999999999

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=83.99  E-value=0.41  Score=24.48  Aligned_cols=27  Identities=26%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             HHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             509998999999998199389988501
Q 028762          176 QAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       176 QagvSrekAvkALke~~GDIV~AIM~L  202 (204)
                      --|.+++.|++||+++|+|+-.|.=.|
T Consensus        13 ~MGF~e~~A~~AL~k~~wnleaAtN~L   39 (43)
T d2g3qa1          13 GMGFTEEEAHNALEKCNWDLEAATNFL   39 (43)
T ss_dssp             TTTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             558788999999998589799999998

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.82  E-value=0.38  Score=24.65  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             878897509998999999998199389988501
Q 028762          170 IELVMTQAGVPRSRAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       170 IeLVm~QagvSrekAvkALke~~GDIV~AIM~L  202 (204)
                      |.-+|+ -|-+|+.|++||+.++|++-.||--|
T Consensus         8 i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~L   39 (41)
T d1oqya1           8 LTEIMS-MGYERERVVAALRASYNNPHRAVEYL   39 (41)
T ss_dssp             HHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred             HHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             999998-59989999999998589999999987