Citrus Sinensis ID: 028782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHcccEEcccEEEEEEEEcccEEEEEEccEEEEcccccEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccccccHHHHHcccccHHHHHHHHHHccccccccEEEEEEEccccEEEEEcccccEccccccEEEEEcccEHHcHHHHHHHHHHHHHcccccccccccccccccHHcHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MTAQTQEELLASLLEQqkidddkpvveddedededededdekdedeadeghrdgeaggrskqsrSEKKSRKAMLKLgmkpipgvsrvtvkkskNILFviskpdvfkspttdtyVIFGEAKIEDLSSQLQTQAAEqfkapdlshvvskpessamaqddeevdetgvepkdIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Flexible Loop (DISEMBL)
MTAQTQEELLASLleqqkidddkpvveddedededededdekdedeadeghrdgeaggrskqsrsekKSRKAmlklgmkpipgvsrvtvkksknilfviskpdvfksptTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPessamaqddeevdetgvepKDIELVMTQAGVSRAKAVKalkaadgdiVSAIMELTN
Low Complexity Region (SEG)
MTAqtqeellaslleqqKIdddkpvveddedededededdekdedeadeGHRDGEAGGrskqsrsekksrkAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Disordered region (IsUnstruct)
**********************************************************************************GVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKI******************************************************************L******I*********
Disordered Region (DISOPRED)
***************************************************************************LGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA*********************************************VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT*
Disordered Region (DISEMBL)
MTAQTQEELLASLLEQQKIDD**************************************************AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFK***************************VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Disordered Region (DISPRO)
******************************************************************KK*RK*MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQ***************************TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9M612	205	Nascent polypeptide-assoc	N/A	no	0.921	0.917	0.760	2e-68
Q9LHG9	203	Nascent polypeptide-assoc	yes	no	0.965	0.970	0.776	2e-66
Q6ICZ8	204	Nascent polypeptide-assoc	no	no	0.965	0.965	0.729	1e-63
Q94JX9	217	Nascent polypeptide-assoc	no	no	0.897	0.843	0.630	4e-54
Q9SZY1	212	Nascent polypeptide-assoc	no	no	0.705	0.679	0.733	1e-51
Q8LGC6	209	Nascent polypeptide-assoc	no	no	0.710	0.693	0.695	3e-50
Q8AWF2	215	Nascent polypeptide-assoc	yes	no	0.740	0.702	0.632	1e-44
Q8JIU7	215	Nascent polypeptide-assoc	yes	no	0.740	0.702	0.619	3e-43
Q60817	215	Nascent polypeptide-assoc	yes	no	0.740	0.702	0.619	6e-43
Q13765	215	Nascent polypeptide-assoc	yes	no	0.740	0.702	0.619	6e-43

>sp|Q9M612|NACA_PINTA Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1

 Score =  258 bits (659), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/196 (76%), Positives = 172/196 (87%), Gaps = 8/196 (4%)

Query: 11  ASLLEQQKID-DDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRSEKKS 69
           A+ LEQQ+++  D+P++EDDED+D++ED++DE D     +G + GE  G+SKQSRSEKK 
Sbjct: 16  AAKLEQQELEHSDEPILEDDEDDDDEEDDNDEDDA----QGEQGGE--GKSKQSRSEKKC 69

Query: 70  RKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQ 129
           RKAMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPT+DTY+ FGEAKIEDLSSQLQ
Sbjct: 70  RKAMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQ 129

Query: 130 TQAAEQFKAPDLSHVVSKPESSAMAQDDE-EVDETGVEPKDIELVMTQAGVSRAKAVKAL 188
           TQAAEQFKAP+LSHV  KPESS  AQ+DE EVD+TGVEPKDIELVMTQAGVSR KAVKAL
Sbjct: 130 TQAAEQFKAPNLSHVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKAL 189

Query: 189 KAADGDIVSAIMELTN 204
           KAADGDIVSAIM+LT 
Sbjct: 190 KAADGDIVSAIMDLTT 205

May promote appropriate targeting of ribosome-nascent polypeptide complexes.
Pinus taeda (taxid: 3352)

>sp|Q9LHG9|NACA1_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1

 Score =  251 bits (642), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 178/201 (88%), Gaps = 4/201 (1%)

Query: 6   QEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRS 65
           ++E+LA+ LE+QKID DKP  E ++D+D ++D+ D+ D+D+ +    DGEAGG+SKQSRS
Sbjct: 5   EKEILAAKLEEQKIDLDKP--EVEDDDDNEDDDSDDDDKDDDEADGLDGEAGGKSKQSRS 62

Query: 66  EKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
           EKKSRKAMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP +DTYVIFGEAKIEDLS
Sbjct: 63  EKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLS 122

Query: 126 SQLQTQAAEQFKAPDLSHVVSKPESSAMA--QDDEEVDETGVEPKDIELVMTQAGVSRAK 183
           SQ+Q+QAAEQFKAPDLS+V+SK ESS+ A  QDDEEVDE GVEPKDIELVMTQAGVSR  
Sbjct: 123 SQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPN 182

Query: 184 AVKALKAADGDIVSAIMELTN 204
           AVKALKAADGDIVSAIMELT 
Sbjct: 183 AVKALKAADGDIVSAIMELTT 203

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ICZ8|NACA3_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1

 Score =  242 bits (617), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 154/211 (72%), Positives = 178/211 (84%), Gaps = 14/211 (6%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTA+ + EL A+ LE+QKID DKP     E ED+D++++D+ ++D+  EGH DGEAGGRS
Sbjct: 1   MTAEQKVEL-AAKLEEQKIDLDKP-----EVEDDDDNDEDDSEDDDEAEGH-DGEAGGRS 53

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP +DTYVIFGEAK
Sbjct: 54  KQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAK 113

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPE-------SSAMAQDDEEVDETGVEPKDIELV 173
           IEDLSSQLQ+QAAEQFKAP+LS+V+S+ E       ++    DDEEVDE GVEPKDIELV
Sbjct: 114 IEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELV 173

Query: 174 MTQAGVSRAKAVKALKAADGDIVSAIMELTN 204
           MTQAGVS+ +AVKALK A+GDIVSAIMELT 
Sbjct: 174 MTQAGVSKPRAVKALKLANGDIVSAIMELTT 204

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JX9|NACA2_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 160/195 (82%), Gaps = 12/195 (6%)

Query: 16  QQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRSEKKSRKAMLK 75
           ++K+  D+P+VED +D+++D+D+D+E+++D+A          G SKQSRSEKKSRKAMLK
Sbjct: 29  EKKLQTDEPIVEDVKDDEDDDDDDEEEEDDDAQG------VSGSSKQSRSEKKSRKAMLK 82

Query: 76  LGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQ 135
           LGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP ++TYVIFGEAKIEDLSSQLQTQAA+Q
Sbjct: 83  LGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQ 142

Query: 136 FKAPDLSHVVSKPESSA------MAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALK 189
           F+ P++     + E+S       + +D+EE+DETGVE +DI+LVMTQAGVSR+KAVKALK
Sbjct: 143 FRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALK 202

Query: 190 AADGDIVSAIMELTN 204
           + DGDIVSAIMELT 
Sbjct: 203 SHDGDIVSAIMELTT 217

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY1|NACA4_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/150 (73%), Positives = 131/150 (87%), Gaps = 6/150 (4%)

Query: 60  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119
           SKQSRSEKKSRKAMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP ++TYVIFGEA
Sbjct: 62  SKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEA 121

Query: 120 KIEDLSSQLQTQAAEQFKAPDLSHVVSK---PESSAMAQ---DDEEVDETGVEPKDIELV 173
           KI+D+SSQLQ QAA++FK PD++ ++      E++ +AQ   DDE+VDETGVE KDI+LV
Sbjct: 122 KIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLV 181

Query: 174 MTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           MTQAGVSR KAVKALK ++GDIVSAIMELT
Sbjct: 182 MTQAGVSRPKAVKALKESNGDIVSAIMELT 211

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGC6|NACA5_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2

 Score =  197 bits (502), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 130/151 (86%), Gaps = 6/151 (3%)

Query: 60  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119
           +KQSRSEKKSRKA+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP  +TYVIFGEA
Sbjct: 59  AKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEA 118

Query: 120 KIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSA-MA-----QDDEEVDETGVEPKDIELV 173
           K++DLSSQLQTQAA++FK PD++ ++    S A MA     +D+++VD+TGVE +DI+LV
Sbjct: 119 KVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDLV 178

Query: 174 MTQAGVSRAKAVKALKAADGDIVSAIMELTN 204
           MTQAGVS+AKAV ALKA DGDIVSAIMELT 
Sbjct: 179 MTQAGVSKAKAVSALKANDGDIVSAIMELTT 209

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 124/155 (80%), Gaps = 4/155 (2%)

Query: 53  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 113 YVIFGEAKIEDLSSQLQTQAAEQFKAP--DLSHVVSKPESSAM--AQDDEEVDETGVEPK 168
           Y++FGEAKIEDLS Q Q  AAE+FK P   +S+V    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           DIELVM+QA VSRAKAV+ALK  + DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Oreochromis niloticus (taxid: 8128)

>sp|Q8JIU7|NACA_DANRE Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 123/155 (79%), Gaps = 4/155 (2%)

Query: 53  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 113 YVIFGEAKIEDLSSQLQTQAAEQFKAPD--LSHVVSKPESSAM--AQDDEEVDETGVEPK 168
           Y++FGEAKIEDLS Q Q  AAE+FK     +S++    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           DIELVM+QA VSRAKAV+ALK  + DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Danio rerio (taxid: 7955)

>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 122/155 (78%), Gaps = 4/155 (2%)

Query: 53  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 113 YVIFGEAKIEDLSSQLQTQAAEQFKAPD--LSHVVSKPESSAM--AQDDEEVDETGVEPK 168
           Y++FGEAKIEDLS Q Q  AAE+FK     +S++    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           DIELVM+QA VSRAKAV+ALK    DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214

Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmic reticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blocks their interaction with the signal recognition particle (SRP), which normally targets nascent secretory peptides to the ER. Also reduces the inherent affinity of ribosomes for protein translocation sites in the ER membrane (M sites) (By similarity). Isoform 1 and isoform 2 appear to bind DNA and play roles in transcription. Isoform 1 may function as a specific coactivator for JUN, acting to stabilize the interaction of JUN homodimers with promoter elements.

Mus musculus (taxid: 10090)

>sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 122/155 (78%), Gaps = 4/155 (2%)

Query: 53  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 113 YVIFGEAKIEDLSSQLQTQAAEQFKAPD--LSHVVSKPESSAM--AQDDEEVDETGVEPK 168
           Y++FGEAKIEDLS Q Q  AAE+FK     +S++    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           DIELVM+QA VSRAKAV+ALK    DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214

Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmic reticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blocks their interaction with the signal recognition particle (SRP), which normally targets nascent secretory peptides to the ER. Also reduces the inherent affinity of ribosomes for protein translocation sites in the ER membrane (M sites). May act as a specific coactivator for JUN, binding to DNA and stabilizing the interaction of JUN homodimers with target gene promoters.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
118482608	205	unknown [Populus trichocarpa]	1.0	0.995	0.848	4e-84
225470846	202	PREDICTED: nascent polypeptide-associate	0.990	1.0	0.808	3e-81
118481688	204	unknown [Populus trichocarpa]	0.995	0.995	0.824	3e-81
449453141	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.803	2e-80
449529584	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.813	2e-80
449453139	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.808	2e-80
351722347	203	uncharacterized protein LOC100500056 [Gl	0.995	1.0	0.818	2e-79
170773910	199	nascent polypeptide associated complex a	0.975	1.0	0.789	2e-78
359481448	202	PREDICTED: nascent polypeptide-associate	0.990	1.0	0.799	2e-78
356571874	202	PREDICTED: nascent polypeptide-associate	0.990	1.0	0.828	2e-78

>gi|118482608|gb|ABK93224.1| unknown [Populus trichocarpa]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/205 (84%), Positives = 193/205 (94%), Gaps = 1/205 (0%)

Query: 1   MTAQTQEELLASLLEQQKI-DDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGR 59
           MTAQTQEELLA+ LE QKI + DKP VED+ED+DED+++D++  +++  EG +DG+ GGR
Sbjct: 1   MTAQTQEELLAAQLEVQKILEADKPEVEDEEDDDEDDEDDEDDKDEDEAEGQQDGDVGGR 60

Query: 60  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119
           SKQSRSEKKSRKAMLKLGMK IPGVSRVTVKKSKNILFVISKPDVFKSPT+DTYVIFGEA
Sbjct: 61  SKQSRSEKKSRKAMLKLGMKTIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEA 120

Query: 120 KIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGV 179
           KIEDLSSQLQTQAAEQFKAPDLSHV+SKPE+SA+AQDDEEVDETGVEPKDIELVMTQAGV
Sbjct: 121 KIEDLSSQLQTQAAEQFKAPDLSHVISKPETSAIAQDDEEVDETGVEPKDIELVMTQAGV 180

Query: 180 SRAKAVKALKAADGDIVSAIMELTN 204
           SR+KAVKALKAADGDIVSAIMELTN
Sbjct: 181 SRSKAVKALKAADGDIVSAIMELTN 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470846|ref|XP_002266597.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like [Vitis vinifera] gi|298205090|emb|CBI40611.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/204 (80%), Positives = 190/204 (93%), Gaps = 2/204 (0%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQTQEELLA+ LEQQKI+ D+     +E++D+D+++D++  +++  EG + G+A GRS
Sbjct: 1   MTAQTQEELLAAHLEQQKINPDE--PVVEEEDDDDDEDDEDDKDEDDVEGEQGGDASGRS 58

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT+DTYVIFGEAK
Sbjct: 59  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEAK 118

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAPDLS+V++KPE+S+MAQDDE+VDETGVEPKDIELVMTQAGVS
Sbjct: 119 IEDLSSQLQTQAAEQFKAPDLSNVIAKPEASSMAQDDEDVDETGVEPKDIELVMTQAGVS 178

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R+KAVKALKAADGDIVSAIMELTN
Sbjct: 179 RSKAVKALKAADGDIVSAIMELTN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481688|gb|ABK92784.1| unknown [Populus trichocarpa]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/205 (82%), Positives = 190/205 (92%), Gaps = 2/205 (0%)

Query: 1   MTAQTQEELLASLLEQQKI-DDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGR 59
           MTAQTQEELLA+ LE QKI + DKP   +DE++DE++D++D+  +++  EG +DG+A GR
Sbjct: 1   MTAQTQEELLAAQLEIQKILEADKPE-VEDEEDDEEDDDEDDDKDEDEAEGQQDGDASGR 59

Query: 60  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119
           SKQSRSEKKSRKAMLKLGMK IPGVSRVTVKKSKNILFVISKPDVFKSPT+DTYVIFGEA
Sbjct: 60  SKQSRSEKKSRKAMLKLGMKTIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEA 119

Query: 120 KIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGV 179
           KIEDLSSQLQTQAAEQFKAPDLSHV+SKPE+SA+AQDDEEVDETGVEPKDIELVMTQAGV
Sbjct: 120 KIEDLSSQLQTQAAEQFKAPDLSHVISKPETSAVAQDDEEVDETGVEPKDIELVMTQAGV 179

Query: 180 SRAKAVKALKAADGDIVSAIMELTN 204
           SR+KAVKALKAADGDIVSAIM+LT 
Sbjct: 180 SRSKAVKALKAADGDIVSAIMDLTT 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453141|ref|XP_004144317.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus] gi|449529586|ref|XP_004171779.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/204 (80%), Positives = 190/204 (93%), Gaps = 4/204 (1%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQT+EELLA+ LE+QKI+ D+PV+EDD+D+++D+++DD+  +++  EGH  GEA GRS
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDEDDDEDDDK--DEDDVEGH--GEASGRS 56

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT+DTY++FGEAK
Sbjct: 57  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAK 116

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS++ SKPE S +AQDDE VDETGVEPKDIELVMTQAGVS
Sbjct: 117 IEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVAQDDEVVDETGVEPKDIELVMTQAGVS 176

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R +AVKALKAA+GDIVSAIMELTN
Sbjct: 177 RPRAVKALKAAEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529584|ref|XP_004171778.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/204 (81%), Positives = 188/204 (92%), Gaps = 4/204 (1%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQT+EELLA+ LE+QKI+ D+PV+EDD+D+D+D+++DD   +D+  EGH  GEA GRS
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDDDDDEDDD--KDDDDVEGH--GEASGRS 56

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT+DTY++FGEAK
Sbjct: 57  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAK 116

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS++ SKPE S + QDDEEVDETGVEPKDIELVMTQAGVS
Sbjct: 117 IEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKDIELVMTQAGVS 176

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R KAVKALKA +GDIVSAIMELTN
Sbjct: 177 RPKAVKALKATEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453139|ref|XP_004144316.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/204 (80%), Positives = 188/204 (92%), Gaps = 4/204 (1%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQT+EELLA+ LE+QKI+ D+PV+EDD+D+D+D+++DD   +++  EGH  GEA GRS
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDDDDDEDDD--KDEDDVEGH--GEASGRS 56

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT+DTY++FGEAK
Sbjct: 57  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAK 116

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS++ SKPE S + QDDEEVDETGVEPKDIELVMTQAGVS
Sbjct: 117 IEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKDIELVMTQAGVS 176

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R KAVKALKA +GDIVSAIMELTN
Sbjct: 177 RPKAVKALKATEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722347|ref|NP_001236217.1| uncharacterized protein LOC100500056 [Glycine max] gi|255628877|gb|ACU14783.1| unknown [Glycine max]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/204 (81%), Positives = 187/204 (91%), Gaps = 1/204 (0%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MT QTQEELLA  LEQQKI DD+PVVEDD DE+ED+D+D++  +D+  +G  +G+A GRS
Sbjct: 1   MTTQTQEELLAQHLEQQKIHDDEPVVEDDNDEEEDDDDDEDDKDDDHADG-LEGDASGRS 59

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQ+RSEKKSRKAMLKLGMKP+ GVSRVTVKKSKNILFVISKPDVFKSPT+DTY+IFGEAK
Sbjct: 60  KQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAK 119

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS+V SKPESSA+AQDDEEVDE GV+PKDIELVMTQAGVS
Sbjct: 120 IEDLSSQLQTQAAEQFKAPNLSNVGSKPESSAVAQDDEEVDEAGVDPKDIELVMTQAGVS 179

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R KAVKALKAA GDIV+AIMELTN
Sbjct: 180 RPKAVKALKAAGGDIVAAIMELTN 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170773910|gb|ACB32231.1| nascent polypeptide associated complex alpha [Solanum chacoense]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/204 (78%), Positives = 186/204 (91%), Gaps = 5/204 (2%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQ+QEELLA+ LEQQK++ + P++ED+ED+D+D+D++ + D+ E       G+  GRS
Sbjct: 1   MTAQSQEELLAAHLEQQKLESEVPIIEDEEDDDDDDDDEKDDDDAEEL-----GDGSGRS 55

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSP +DTYVIFGEAK
Sbjct: 56  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPNSDTYVIFGEAK 115

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQ+QAAEQFKAP+LS+V+SKPE S +AQDDE+VDETGVEPKDIELVMTQAGVS
Sbjct: 116 IEDLSSQLQSQAAEQFKAPNLSNVISKPEPSTVAQDDEDVDETGVEPKDIELVMTQAGVS 175

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           RAKAVKAL+AADGDIVSAIME+TN
Sbjct: 176 RAKAVKALRAADGDIVSAIMEITN 199

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481448|ref|XP_003632619.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like isoform 2 [Vitis vinifera]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/204 (79%), Positives = 187/204 (91%), Gaps = 2/204 (0%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQTQEELLA+ LE+QKI+ D+PVVED++DED+D+D+DD+  +++  EG  DG   GRS
Sbjct: 1   MTAQTQEELLAAHLEEQKINPDEPVVEDEDDEDDDDDDDDDDKDEDDAEGQDDG--SGRS 58

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMK IPGVSRVT+KKSKNILFVISKPDVFKSPT+DTYVIFGEAK
Sbjct: 59  KQSRSEKKSRKAMLKLGMKTIPGVSRVTIKKSKNILFVISKPDVFKSPTSDTYVIFGEAK 118

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP++    ++PE++A+ QDDEEVDETGVEPKDI+LVMTQAGVS
Sbjct: 119 IEDLSSQLQTQAAEQFKAPNVHPAAAQPETAAVVQDDEEVDETGVEPKDIDLVMTQAGVS 178

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R+KAVKALKAADGDIVSAIMELTN
Sbjct: 179 RSKAVKALKAADGDIVSAIMELTN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571874|ref|XP_003554096.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Glycine max]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/204 (82%), Positives = 189/204 (92%), Gaps = 2/204 (0%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQTQEELLA  LEQQKI D +PVVEDD+DE+ED+D+DD++D+D A EG  +G+A GRS
Sbjct: 1   MTAQTQEELLAQHLEQQKIHDGEPVVEDDDDEEEDDDDDDDEDDDHA-EG-LEGDASGRS 58

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQ+RSEKKSRKAMLKLGMKP+ GVSRVTVKKSKNILFVISKPDVFKSPT++TY+IFGEAK
Sbjct: 59  KQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSETYIIFGEAK 118

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS+V  KPESSA+AQDDEEVDE GV+PKDIELVMTQAGVS
Sbjct: 119 IEDLSSQLQTQAAEQFKAPNLSNVGLKPESSAVAQDDEEVDEAGVDPKDIELVMTQAGVS 178

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R KAVKALKAA GDIV+AIMELTN
Sbjct: 179 RPKAVKALKAASGDIVAAIMELTN 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2092462	203	AT3G12390 [Arabidopsis thalian	0.740	0.743	0.816	1.4e-57
TAIR|locus:2159093	204	NACA3 "AT5G13850" [Arabidopsis	0.75	0.75	0.751	3.4e-54
TAIR|locus:2114703	217	NACA2 "AT3G49470" [Arabidopsis	0.647	0.608	0.702	7.9e-46
TAIR|locus:2127681	212	AT4G10480 "AT4G10480" [Arabido	0.647	0.622	0.702	1.6e-45
TAIR|locus:2206975	209	NACA5 "AT1G33040" [Arabidopsis	0.740	0.722	0.613	6.4e-44
FB|FBgn0086904	217	Nacalpha "Nascent polypeptide	0.642	0.603	0.632	7e-38
UNIPROTKB|Q5E9A1	215	NACA "Nascent polypeptide-asso	0.647	0.613	0.617	7e-38
UNIPROTKB|Q13765	215	NACA "Nascent polypeptide-asso	0.647	0.613	0.617	7e-38
MGI|MGI:106095	215	Naca "nascent polypeptide-asso	0.647	0.613	0.617	7e-38
UNIPROTKB|H9KYU8	192	NACA2 "Uncharacterized protein	0.642	0.682	0.607	1e-36

TAIR|locus:2092462 AT3G12390 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 125/153 (81%), Positives = 131/153 (85%)

Query:    53 DGEAGGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
             DGEAGG             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP +DT
Sbjct:    50 DGEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDT 109

Query:   113 YVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESS--AMAQDDEEVDETGVEPKDI 170
             YVIFGEAKIEDLSSQ+Q+QAAEQFKAPDLS+V+SK ESS  A+ QDDEEVDE GVEPKDI
Sbjct:   110 YVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDI 169

Query:   171 ELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
             ELVMTQAGVSR  AVKALKAADGDIVSAIMELT
Sbjct:   170 ELVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2159093 NACA3 "AT5G13850" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 121/161 (75%), Positives = 132/161 (81%)

Query:    50 GHRDGEAGGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 109
             GH DGEAGG             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP 
Sbjct:    44 GH-DGEAGGRSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPA 102

Query:   110 TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMA-------QDDEEVDE 162
             +DTYVIFGEAKIEDLSSQLQ+QAAEQFKAP+LS+V+S+ E+S+ A        DDEEVDE
Sbjct:   103 SDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDE 162

Query:   163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
              GVEPKDIELVMTQAGVS+ +AVKALK A+GDIVSAIMELT
Sbjct:   163 EGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0051604 "protein maturation" evidence=RCA

TAIR|locus:2114703 NACA2 "AT3G49470" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 97/138 (70%), Positives = 118/138 (85%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP ++TYVIFGEAKIEDLSSQLQTQ
Sbjct:    79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQ 138

Query:   132 AAEQFKAPDLSHVVSKPESSA------MAQDDEEVDETGVEPKDIELVMTQAGVSRAKAV 185
             AA+QF+ P++     + E+S       + +D+EE+DETGVE +DI+LVMTQAGVSR+KAV
Sbjct:   139 AAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAV 198

Query:   186 KALKAADGDIVSAIMELT 203
             KALK+ DGDIVSAIMELT
Sbjct:   199 KALKSHDGDIVSAIMELT 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2127681 AT4G10480 "AT4G10480" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 97/138 (70%), Positives = 117/138 (84%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP ++TYVIFGEAKI+D+SSQLQ Q
Sbjct:    74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQ 133

Query:   132 AAEQFKAPDLSHVVSKPESSAMA------QDDEEVDETGVEPKDIELVMTQAGVSRAKAV 185
             AA++FK PD++ ++   + S  A      +DDE+VDETGVE KDI+LVMTQAGVSR KAV
Sbjct:   134 AAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAV 193

Query:   186 KALKAADGDIVSAIMELT 203
             KALK ++GDIVSAIMELT
Sbjct:   194 KALKESNGDIVSAIMELT 211

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2206975 NACA5 "AT1G33040" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/158 (61%), Positives = 122/158 (77%)

Query:    53 DGEAGGXXXXXXXXXXXXX-AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTD 111
             +GE G               A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP  +
Sbjct:    51 EGEGGNENAKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAE 110

Query:   112 TYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSA-MA-----QDDEEVDETGV 165
             TYVIFGEAK++DLSSQLQTQAA++FK PD++ ++    S A MA     +D+++VD+TGV
Sbjct:   111 TYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGV 170

Query:   166 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
             E +DI+LVMTQAGVS+AKAV ALKA DGDIVSAIMELT
Sbjct:   171 EARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELT 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0086904 Nacalpha "Nascent polypeptide associated complex protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 86/136 (63%), Positives = 109/136 (80%)

Query:    73 MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQA 132
             MLKLG+K I GV+RVT++KSKNILFVI+ PDV+K+P +DTY++FGEAKIEDLS Q Q  A
Sbjct:    80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAA 139

Query:   133 AEQFKAPDLSHV---VSKPESSA-MAQDDEE-VDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AE+FKAP+ +     V    S A +A++DEE VD+TGV+ KDIELV+TQA  +RAKA+KA
Sbjct:   140 AEKFKAPEAAGAADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKA 199

Query:   188 LKAADGDIVSAIMELT 203
             LK  + DIV+AIMELT
Sbjct:   200 LKNNNNDIVNAIMELT 215

GO:0048477 "oogenesis" evidence=IMP

GO:0005854 "nascent polypeptide-associated complex" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5E9A1 NACA "Nascent polypeptide-associated complex subunit alpha" [Bos taurus (taxid:9913)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   132 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0005634 "nucleus" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q13765 NACA "Nascent polypeptide-associated complex subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   132 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005854 "nascent polypeptide-associated complex" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003231 "cardiac ventricle development" evidence=ISS

GO:0010664 "negative regulation of striated muscle cell apoptotic process" evidence=ISS

GO:0043403 "skeletal muscle tissue regeneration" evidence=ISS

GO:0048633 "positive regulation of skeletal muscle tissue growth" evidence=ISS

GO:0048742 "regulation of skeletal muscle fiber development" evidence=ISS

GO:0061384 "heart trabecula morphogenesis" evidence=ISS

GO:1901227 "negative regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:1901228 "positive regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:2000138 "positive regulation of cell proliferation involved in heart morphogenesis" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

MGI|MGI:106095 Naca "nascent polypeptide-associated complex alpha polypeptide" [Mus musculus (taxid:10090)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   132 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IDA

UNIPROTKB|H9KYU8 NACA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 82/135 (60%), Positives = 106/135 (78%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    56 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 115

Query:   132 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   116 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 175

Query:   188 LKAADGDIVSAIMEL 202
             LK    DIV+AIM L
Sbjct:   176 LKNNSNDIVNAIMAL 190

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHG9	NACA1_ARATH	No assigned EC number	0.7761	0.9656	0.9704	yes	no
Q94518	NACA_DROME	No assigned EC number	0.6133	0.7107	0.6682	yes	no
Q8JIU7	NACA_DANRE	No assigned EC number	0.6193	0.7401	0.7023	yes	no
Q5R9I9	NACA_PONAB	No assigned EC number	0.5641	0.7352	0.6976	yes	no
Q13765	NACA_HUMAN	No assigned EC number	0.6193	0.7401	0.7023	yes	no
Q8AWF2	NACA_ORENI	No assigned EC number	0.6322	0.7401	0.7023	yes	no
Q9M612	NACA_PINTA	No assigned EC number	0.7602	0.9215	0.9170	N/A	no
A2R4V1	NACA_ASPNC	No assigned EC number	0.5031	0.6960	0.7029	yes	no
Q5AYK0	NACA_EMENI	No assigned EC number	0.4509	0.8578	0.8620	yes	no
Q2U955	NACA_ASPOR	No assigned EC number	0.4659	0.8529	0.8613	yes	no
Q6ICZ8	NACA3_ARATH	No assigned EC number	0.7298	0.9656	0.9656	no	no
Q68F90	NACA_XENTR	No assigned EC number	0.6193	0.7401	0.7056	yes	no
Q61UX1	NACA_CAEBR	No assigned EC number	0.5300	0.8088	0.8375	N/A	no
Q60817	NACA_MOUSE	No assigned EC number	0.6193	0.7401	0.7023	yes	no
Q4I2J8	NACA_GIBZE	No assigned EC number	0.4627	0.8235	0.8038	yes	no
Q5E9A1	NACA_BOVIN	No assigned EC number	0.6193	0.7401	0.7023	yes	no
Q86S66	NACA_CAEEL	No assigned EC number	0.5245	0.8186	0.8477	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00010207 hypothetical protein (179 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam01849	50	pfam01849, NAC, NAC domain	3e-17
COG1308	122	COG1308, EGD2, Transcription factor homologous to	3e-13
PRK06369	115	PRK06369, nac, nascent polypeptide-associated comp	3e-09
pfam02724	583	pfam02724, CDC45, CDC45-like protein	5e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	5e-04
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	9e-04
pfam06524	314	pfam06524, NOA36, NOA36 protein	0.002
TIGR00264	116	TIGR00264, TIGR00264, alpha-NAC-related protein	0.003
pfam00627	37	pfam00627, UBA, UBA/TS-N domain	0.004

>gnl|CDD|202009 pfam01849, NAC, NAC domain

 Score = 71.8 bits (177), Expect = 3e-17
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 75  KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIED 123
           KLG+KPI GV  VT++K    + V + P V KSP ++TYV+FGEAK +D
Sbjct: 2   KLGLKPIEGVEEVTIRKKDGKVLVFNNPKVQKSPGSNTYVVFGEAKEKD 50

Length = 50

>gnl|CDD|224227 COG1308, EGD2, Transcription factor homologous to NACalpha-BTF3 [Transcription]

 Score = 63.2 bits (154), Expect = 3e-13
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 32/141 (22%)

Query: 67  KKSRKAMLKLG--MKPIPGVSRVTVKKSKNILFVISKPDVF--KSPTTDTYVIFGEAKIE 122
           +K +K M ++G  ++ + GV RV +K       VI  P V   K+    TY I G+   +
Sbjct: 9   RKLKKLMKQMGIDVEELDGVERVIIKLKDTEY-VIENPQVTVMKAMGQKTYQISGDPSAK 67

Query: 123 DLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRA 182
           +                     V KPE       ++ VDE+ +  +DI+LVM QAGVSR 
Sbjct: 68  E--------------------AVKKPE-------EKTVDESDISEEDIKLVMEQAGVSRE 100

Query: 183 KAVKALKAADGDIVSAIMELT 203
           +A+KAL+ A GD+  AIM+LT
Sbjct: 101 EAIKALEEAGGDLAEAIMKLT 121

Length = 122

>gnl|CDD|235786 PRK06369, nac, nascent polypeptide-associated complex protein; Reviewed

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 158 EEVDETGVEPK--DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 204
           E+  E  VE    DIELV  Q GVS  +A KAL+ A+GD+  AI++L++
Sbjct: 66  EKEAEKEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS 114

Length = 115

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 16/68 (23%), Positives = 33/68 (48%)

Query: 6   QEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRS 65
           +EEL           D +   +DDE+ DE+++E  + ++DE D+   D +     ++S  
Sbjct: 107 EEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLE 166

Query: 66  EKKSRKAM 73
            ++ R+  
Sbjct: 167 RRRRRREW 174

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 17/72 (23%), Positives = 33/72 (45%)

Query: 4   QTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQS 63
              EE L           D    +DD++E ++EDE+  K ED+ D+   D +    +++ 
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163

Query: 64  RSEKKSRKAMLK 75
             E++ R+   +
Sbjct: 164 SLERRRRRREWE 175

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 18/71 (25%), Positives = 37/71 (52%)

Query: 6  QEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRS 65
          +EE + +   +++ +++   V      D D+DE   +DEDE +E   + E+  +++ S+ 
Sbjct: 1  EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60

Query: 66 EKKSRKAMLKL 76
          EK   K + K 
Sbjct: 61 EKARLKELKKQ 71

Length = 1033

>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 20  DDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGG 58
           DDD+    +D DE+ED D+DD +D D+ +  H D +   
Sbjct: 274 DDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDN 312

This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown. Length = 314

>gnl|CDD|232898 TIGR00264, TIGR00264, alpha-NAC-related protein

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202
           DIELVM Q  VS+ +A +AL+   GD+  AIM+L
Sbjct: 81  DIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator [Unknown function, General]. Length = 116

>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain

 Score = 33.6 bits (78), Expect = 0.004
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202
           ++ + I+ +    G SR +A KAL+A +G++  A+  L
Sbjct: 1   IDEELIKQLREM-GFSREEAKKALRATNGNVERAVEYL 37

This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG2239	209	consensus Transcription factor containing NAC and	100.0
PRK06369	115	nac nascent polypeptide-associated complex protein	100.0
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	99.98
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	99.97
PF01849	58	NAC: NAC domain; InterPro: IPR002715 Nascent polyp	99.84
KOG2240	162	consensus RNA polymerase II general transcription	98.74
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.65
KOG3450	119	consensus Huntingtin interacting protein HYPK [Gen	97.55
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	95.49
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.06
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	94.79
COG4008	153	Predicted metal-binding transcription factor [Tran	86.01
COG2103	298	Predicted sugar phosphate isomerase [General funct	84.2
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	82.4

>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]

Probab=100.00  E-value=2.5e-53  Score=359.62  Aligned_cols=150  Identities=67%  Similarity=0.924  Sum_probs=135.4

Q ss_pred             CCCCCCcCCcCHHHHHHHHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhhHHHHHHHH
Q 028782           55 EAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAE  134 (204)
Q Consensus        55 ~~~~~~k~sr~eKK~rk~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~q~q~~aae  134 (204)
                      .+.+++||||++||.||+|.||||++|+||+|||||+++|++|+|++|+|||+|+++||+|||+++++++++|+|.+|++
T Consensus        55 ~~~~~akqsrsekKark~m~KLGlk~v~gV~RVti~ksKNilfvI~kPdVyKsp~sdtYiiFGeakiedls~q~q~~aae  134 (209)
T KOG2239|consen   55 EPVAKAKQSRSEKKARKAMLKLGLKQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIIFGEAKIEDLSQQAQMQAAE  134 (209)
T ss_pred             cchhhhhcchHHHHHHHHHHhcCCccccceeEEEEEecccEEEEecCCceeccCCCceEEEecccccchhHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccCCC----Ccc-ccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028782          135 QFKAPDLSHVVSKP----ESS-AMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       135 ~~~~~~~~~~~~~~----~~~-~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                      +|+.+..++.....    .++ .+.+++++||++||+.+||+|||+|+||||++||||||+|+||||||||+||+
T Consensus       135 ~fk~~~~~~~~~~~~~~~~~~~~ee~dEeeVD~tgve~kDIeLVmsQanvSR~kAVkALk~~~~DiVnAIM~LT~  209 (209)
T KOG2239|consen  135 RFKVPQEAPGLIQEDTSATPPAQEESDEEEVDETGVEAKDIELVMSQANVSRAKAVKALKNNNNDIVNAIMELTK  209 (209)
T ss_pred             hccCCccccccccccccCCCccccccchhccCcccCchhhHHHHHHHhhhhHHHHHHHHHhccchHHHHHHHhhC
Confidence            99987655543221    122 22355667999999999999999999999999999999999999999999985

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=100.00  E-value=1.5e-37  Score=245.06  Aligned_cols=106  Identities=31%  Similarity=0.501  Sum_probs=97.5

Q ss_pred             cCHHHHHHHHHHcCCc--ccCCceEEEEEecCceEEEEcCCeEE--eeCCCcEEEEeccceecchhhHHHHHHHHHhcCC
Q 028782           64 RSEKKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDVF--KSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAP  139 (204)
Q Consensus        64 r~eKK~rk~mkKLGlk--~v~gV~rVtI~k~~~~~fvI~~P~V~--ks~gs~tYvVfGeak~ed~~~q~q~~aae~~~~~  139 (204)
                      -||||+|+||+||||+  +| ||.||+|++.+ ..|||++|+||  +++|++||||||+++.++++++.           
T Consensus         5 ~nprk~rkmmkkmGik~e~i-~v~~V~Ir~~~-~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~-----------   71 (115)
T PRK06369          5 MNPRKMKQMMKQMGIDVEEL-DVEEVIIRLKD-KEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEK-----------   71 (115)
T ss_pred             CCHHHHHHHHHHcCCcchhc-CeEEEEEEeCC-EEEEEcCCeEEEEecCCCcEEEEEeccEEeeccccc-----------
Confidence            4689999999999999  99 99999999987 89999999999  78999999999999998764420           


Q ss_pred             CCCcccCCCCccccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028782          140 DLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                                            +++|+++||+|||+||||||++|++||++||||||+|||.|+.
T Consensus        72 ----------------------~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         72 ----------------------EVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             ----------------------cCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence                                  3589999999999999999999999999999999999999973

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=99.98  E-value=8.8e-33  Score=219.33  Aligned_cols=113  Identities=38%  Similarity=0.613  Sum_probs=95.2

Q ss_pred             cCHHHHHHHHHHcCCc--ccCCceEEEEEecCceEEEEcCCeEEe--eCCCcEEEEeccceecchhhHHHHHHHHHhcCC
Q 028782           64 RSEKKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDVFK--SPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAP  139 (204)
Q Consensus        64 r~eKK~rk~mkKLGlk--~v~gV~rVtI~k~~~~~fvI~~P~V~k--s~gs~tYvVfGeak~ed~~~q~q~~aae~~~~~  139 (204)
                      -|+|+|+|+|++|||+  +|+||.||+|++.++. |+|++|.||.  ++|+.||+|.|.+..+.                
T Consensus         6 mnpr~l~k~mkqmGi~~eeld~v~~V~i~~kd~e-~vi~~P~V~~~~~~g~~~yqi~g~~~~~~----------------   68 (122)
T COG1308           6 MNPRKLKKLMKQMGIDVEELDGVERVIIKLKDTE-YVIENPQVTVMKAMGQKTYQISGDPSAKE----------------   68 (122)
T ss_pred             CCHHHHHHHHHHhCCCceeccCceEEEEEcCCce-EEeeCCcEEeehhcchhHHHHhcchhhhc----------------
Confidence            5689999999999955  8999999999998875 9999999976  58899999999964100                


Q ss_pred             CCCcccCCCCccccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028782          140 DLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                                 .....++..+++..|+++||+|||+||||||++|||||+++|||||+|||+||.
T Consensus        69 -----------~~~~~ee~~~d~~~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~~  122 (122)
T COG1308          69 -----------AVKKPEEKTVDESDISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLTE  122 (122)
T ss_pred             -----------ccccchhcccccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhcC
Confidence                       000112334667789999999999999999999999999999999999999984

>TIGR00264 alpha-NAC-related protein

Probab=99.97  E-value=1.7e-31  Score=210.72  Aligned_cols=101  Identities=34%  Similarity=0.530  Sum_probs=87.9

Q ss_pred             HHHHHHHHHcCCc--ccCCceEEEEEecCceEEEEcCCeE--EeeCCCcEEEEeccceecchhhHHHHHHHHHhcCCCCC
Q 028782           67 KKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDV--FKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLS  142 (204)
Q Consensus        67 KK~rk~mkKLGlk--~v~gV~rVtI~k~~~~~fvI~~P~V--~ks~gs~tYvVfGeak~ed~~~q~q~~aae~~~~~~~~  142 (204)
                      |+||+||+||||+  ++. |.+|+|++.++ .++|++|.|  |+++|+.||||||+++.+++..                
T Consensus        12 ~~mkkmMk~MGi~~~eid-V~~ViIk~~~k-~ivf~~p~V~~m~~~G~~tYqI~G~~~~~~~~~----------------   73 (116)
T TIGR00264        12 KQMQKMMKQMGMEMEDLD-VEEVIIVFDDE-EWIFENPKVQVMDILGVKTYQITGKPKKEKVEE----------------   73 (116)
T ss_pred             HHHHHHHHHcCCCccccc-cEEEEEEeCCc-eEEEecCeeEEEecCCcEEEEEecccEEeeccc----------------
Confidence            3999999999999  476 99999999764 577999988  6789999999999998754310                


Q ss_pred             cccCCCCccccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028782          143 HVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       143 ~~~~~~~~~~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                                         +.+|+++||+|||+||||||++|++||+++|||||+|||.|+.
T Consensus        74 -------------------~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~~  116 (116)
T TIGR00264        74 -------------------EEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKLEE  116 (116)
T ss_pred             -------------------ccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhhC
Confidence                               0259999999999999999999999999999999999999973

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation

Probab=99.84  E-value=3.5e-21  Score=134.59  Aligned_cols=58  Identities=52%  Similarity=0.886  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecc
Q 028782           66 EKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIED  123 (204)
Q Consensus        66 eKK~rk~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed  123 (204)
                      |||+|++|+||||++|+||.||+|++.+|.+|+|++|+||++++++||+|||++++++
T Consensus         1 ekk~~~~l~klgl~~i~~i~eV~i~~~dg~~~~~~~P~V~~~~~~~tyvV~G~~~~~~   58 (58)
T PF01849_consen    1 EKKLQKMLKKLGLKEIPGIEEVTIRKDDGTVFVFNNPEVQKSPGSNTYVVFGEAEEED   58 (58)
T ss_dssp             -------GHHCT-EEETTEEEEEEEETTTEEEEEESEEEEEETTCCEEEEESEEEEEE
T ss_pred             CHHHHHHHHHcCCcccCCcEEEEEEECCceEEEEcCCeEEEcCCCCEEEEEeeeEEcC
Confidence            6999999999999999999999999999999999999999999999999999998764

The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.

>KOG2240 consensus RNA polymerase II general transcription factor BTF3 and related proteins [Transcription]

Probab=98.74  E-value=7e-09  Score=86.54  Aligned_cols=64  Identities=28%  Similarity=0.512  Sum_probs=59.5

Q ss_pred             CcCHHHHHHHHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhh
Q 028782           63 SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS  126 (204)
Q Consensus        63 sr~eKK~rk~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~  126 (204)
                      ...+||++.-|+||++.+|+||.+|.|++.++.+++|++|.|+++...|||.|+|.++.+.++.
T Consensus        38 ~~ddkKlqs~lkkl~v~~i~~i~evn~~k~~g~Vihf~~~~vqasl~~nTf~ItG~~~~k~l~E  101 (162)
T KOG2240|consen   38 TADDKKLQSSLKKLGVNNIPGIEEVNMFKNDGTVIHFNNPKVQASLAANTFTITGHAETKQLTE  101 (162)
T ss_pred             CcccchhhhhhhhhccccccchhHhhhccccceeEecCCccccccccCCeEEEecCCcccchhh
Confidence            4568999999999999999999999999999999999999999999999999999998876543

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.65  E-value=5.2e-05  Score=48.13  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=31.9

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      |+++.|..+++. |+|++.|++||+.++||+-.||.-|
T Consensus         1 i~~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    1 IDEEKVQQLMEM-GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             SHHHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            356788999999 9999999999999999999998754

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>KOG3450 consensus Huntingtin interacting protein HYPK [General function prediction only]

Probab=97.55  E-value=4.8e-05  Score=60.20  Aligned_cols=42  Identities=33%  Similarity=0.577  Sum_probs=39.1

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028782          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                      ..|.++||+|+|...-+++.-|.+-|++++||+|.|+-.|++
T Consensus        77 V~IkkeDlelImnELei~k~~aer~LrE~~Gdvv~Alral~s  118 (119)
T KOG3450|consen   77 VTIKKEDLELIMNELEISKAAAERSLREHMGDVVEALRALTS  118 (119)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc
Confidence            358899999999999999999999999999999999988864

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=95.49  E-value=0.02  Score=37.39  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      +-|.-.|+-|||+++.|+..|+.+++||-.||=
T Consensus         2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~   34 (43)
T PF14555_consen    2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVN   34 (43)
T ss_dssp             HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHH
Confidence            357788999999999999999999999988873

>cd00194 UBA Ubiquitin Associated domain

Probab=95.06  E-value=0.039  Score=34.47  Aligned_cols=32  Identities=34%  Similarity=0.521  Sum_probs=26.0

Q ss_pred             HHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          170 IELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       170 IeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      |..++ ..|.+++.|+.||+.++||+-.|+--|
T Consensus         5 v~~L~-~mGf~~~~~~~AL~~~~~d~~~A~~~L   36 (38)
T cd00194           5 LEQLL-EMGFSREEARKALRATNNNVERAVEWL   36 (38)
T ss_pred             HHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            44444 469999999999999999999987544

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=94.79  E-value=0.051  Score=33.78  Aligned_cols=28  Identities=43%  Similarity=0.580  Sum_probs=23.7

Q ss_pred             HhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          175 TQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       175 ~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      ...|.+++.|+.||+.++||+-.|+--|
T Consensus         9 ~~mGf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165        9 LEMGFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             HHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            3459999999999999999998887543

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>COG4008 Predicted metal-binding transcription factor [Transcription]

Probab=86.01  E-value=1.1  Score=36.98  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=28.7

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      ..++.+-++.+..-. ||.++|++||.+++ |+..|+-
T Consensus       111 s~~~~e~v~v~a~a~-v~~eeAr~aleeag-Dl~~A~k  146 (153)
T COG4008         111 SEPPVEEVEVLADAF-VTPEEAREALEEAG-DLRTAMK  146 (153)
T ss_pred             CCCcHHHHHHHHHhc-CCHHHHHHHHHHcC-CHHHHHH
Confidence            445667777776655 99999999999996 9999853

>COG2103 Predicted sugar phosphate isomerase [General function prediction only]

Probab=84.20  E-value=1.3  Score=40.47  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=33.8

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      .+-+.-+..||+-|||+|++|..+|++++|++=-||+-+
T Consensus       231 KL~dRa~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~  269 (298)
T COG2103         231 KLRDRAVRIVMEATGCSAEEAEALLEEAGGNVKLAIVML  269 (298)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHH
Confidence            355677899999999999999999999999998887643

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=82.40  E-value=1.7  Score=39.13  Aligned_cols=38  Identities=39%  Similarity=0.583  Sum_probs=30.7

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      +-..=+.+||+-+|||+++|.++|..++|.+=-||+-+
T Consensus       234 l~~ra~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~  271 (299)
T PRK05441        234 LVDRAVRIVMEATGVSREEAEAALEAADGSVKLAIVMI  271 (299)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHH
Confidence            34566778899999999999999999999987777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3mcb_A	54	Crystal Structure Of Nac Domains Of Human Nascent P		6e-19
3lkx_B	54	Human Nac Dimerization Domain Length = 54		3e-18
3mce_A	61	Crystal Structure Of The Nac Domain Of Alpha Subuni		1e-17

>pdb|3MCB|A Chain A, Crystal Structure Of Nac Domains Of Human Nascent Polypeptide- Associated Complex (Nac) Length = 54

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 50/54 (92%)
Query: 72  AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
           AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 1   AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>pdb|3LKX|B Chain B, Human Nac Dimerization Domain Length = 54

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 48/53 (90%)
Query: 77  GMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQ 129
           G++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q
Sbjct: 2   GLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQ 54

>pdb|3MCE|A Chain A, Crystal Structure Of The Nac Domain Of Alpha Subunit Of Nascent Polypeptide-Associated Complex(Nac) Length = 61

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 48/51 (94%)
Query: 75  KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
           KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 10  KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	1e-27
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	5e-27
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	1e-22

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B Length = 54

 Score = 98.3 bits (245), Expect = 1e-27
 Identities = 39/54 (72%), Positives = 50/54 (92%)

Query: 72  AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
           AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 1   AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens} Length = 61

 Score = 96.8 bits (241), Expect = 5e-27
 Identities = 37/53 (69%), Positives = 48/53 (90%)

Query: 73  MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
             KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 8   FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Length = 102

 Score = 86.9 bits (215), Expect = 1e-22
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 36/136 (26%)

Query: 69  SRKAMLKLGMKPIPGVSRVTVK-KSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQ 127
           S    + + MK + GV  V +K K K I+    K +V +     TY + G+A+   L ++
Sbjct: 2   SHMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSLEAE 61

Query: 128 LQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
           ++                                   +   DIELVM Q G SR  A +A
Sbjct: 62  ME-----------------------------------IPEDDIELVMNQTGASREDATRA 86

Query: 188 LKAADGDIVSAIMELT 203
           L+   GD+  AIM L+
Sbjct: 87  LQETGGDLAEAIMRLS 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	100.0
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	99.87
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	99.86
3mcb_B	58	Transcription factor BTF3; beta-barrel like struct	99.32
3lkx_A	66	Transcription factor BTF3; beta-barrel, chaperone;	99.29
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	98.48
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	98.18
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	97.03
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	94.89
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	94.49
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	93.9
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	93.7
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	93.54
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	93.24
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	93.2
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	92.98
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	92.86
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	92.6
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	92.44
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	92.22
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	92.11
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	92.08
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	91.87
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	91.31
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	91.3
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	91.15
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	90.5
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	90.32
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	89.52
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	89.42
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	88.48
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	87.22
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	85.96
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	85.92
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	85.39
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	83.58
2dna_A	67	Unnamed protein product; ubiquitin associated doma	83.54
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	83.36
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	82.61
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	82.54

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=100.00  E-value=1.1e-36  Score=234.54  Aligned_cols=97  Identities=37%  Similarity=0.563  Sum_probs=81.9

Q ss_pred             HHHHHcCC--cccCCceEEEEEecCceEEEEcCCeEEe--eCCCcEEEEeccceecchhhHHHHHHHHHhcCCCCCcccC
Q 028782           71 KAMLKLGM--KPIPGVSRVTVKKSKNILFVISKPDVFK--SPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVS  146 (204)
Q Consensus        71 k~mkKLGl--k~v~gV~rVtI~k~~~~~fvI~~P~V~k--s~gs~tYvVfGeak~ed~~~q~q~~aae~~~~~~~~~~~~  146 (204)
                      |||+||||  ++|+||+||+||+.+ .+|+|++|+||+  +||++||+|||+++.+++.                     
T Consensus         2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~---------------------   59 (102)
T 1tr8_A            2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE---------------------   59 (102)
T ss_dssp             --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred             chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeeccc---------------------
Confidence            68999999  799999999999998 899999999996  8999999999999988751                     


Q ss_pred             CCCccccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhc
Q 028782          147 KPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT  203 (204)
Q Consensus       147 ~~~~~~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt  203 (204)
                                 +   ++||+++||+|||+|+||||++|++||++||||||+|||.||
T Consensus        60 -----------~---e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt  102 (102)
T 1tr8_A           60 -----------A---EMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS  102 (102)
T ss_dssp             -----------E---ECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred             -----------c---cCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence                       0   168999999999999999999999999999999999999996

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}

Probab=99.87  E-value=4e-23  Score=145.96  Aligned_cols=57  Identities=65%  Similarity=1.092  Sum_probs=50.8

Q ss_pred             HHHHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhh
Q 028782           70 RKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS  126 (204)
Q Consensus        70 rk~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~  126 (204)
                      |++|+||||++|+||+||+|||++|++|+|++|+||++|+++||+|||+++++|+++
T Consensus         5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q   61 (61)
T 3mce_A            5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ   61 (61)
T ss_dssp             SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred             HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence            467999999999999999999999999999999999999999999999999999863

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B

Probab=99.86  E-value=2e-22  Score=139.31  Aligned_cols=54  Identities=72%  Similarity=1.188  Sum_probs=51.7

Q ss_pred             HHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchh
Q 028782           72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS  125 (204)
Q Consensus        72 ~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~  125 (204)
                      +|+||||++|+||+||+|||++|.+|+|++|+||++|+++||+|||+++.+|++
T Consensus         1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~   54 (54)
T 3mcb_A            1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS   54 (54)
T ss_dssp             CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred             CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence            489999999999999999999999999999999999999999999999999874

>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}

Probab=99.32  E-value=2.8e-12  Score=89.64  Aligned_cols=48  Identities=23%  Similarity=0.429  Sum_probs=45.2

Q ss_pred             cccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhh
Q 028782           79 KPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS  126 (204)
Q Consensus        79 k~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~  126 (204)
                      ..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.++++++..
T Consensus         2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e   49 (58)
T 3mcb_B            2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE   49 (58)
T ss_dssp             CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred             cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence            578999999999999999999999999999999999999999998754

>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}

Probab=99.29  E-value=5.4e-12  Score=90.25  Aligned_cols=48  Identities=23%  Similarity=0.429  Sum_probs=44.2

Q ss_pred             cccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhh
Q 028782           79 KPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS  126 (204)
Q Consensus        79 k~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~  126 (204)
                      ..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.++++++..
T Consensus         2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e   49 (66)
T 3lkx_A            2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE   49 (66)
T ss_dssp             EECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred             cccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence            579999999999999999999999999999999999999999998754

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.48  E-value=7.4e-08  Score=74.26  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=34.7

Q ss_pred             cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      +++|++||++||||+++|++||.++||||..||+.|
T Consensus        40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~L   75 (104)
T 1wj7_A           40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL   75 (104)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            579999999999999999999999999999999987

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=98.18  E-value=1.8e-06  Score=61.19  Aligned_cols=40  Identities=25%  Similarity=0.296  Sum_probs=37.9

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      ..|+.++|+.+.++||++..++++||.++||||..||..|
T Consensus         6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L   45 (64)
T 2cp9_A            6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL   45 (64)
T ss_dssp             SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            3688999999999999999999999999999999999887

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=97.03  E-value=0.00062  Score=42.30  Aligned_cols=35  Identities=31%  Similarity=0.389  Sum_probs=30.5

Q ss_pred             cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      ++.|..+|+. |+||+.|++||+.++||+-.|+--|
T Consensus         5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L   39 (40)
T 1z96_A            5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL   39 (40)
T ss_dssp             HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4578888887 9999999999999999998887544

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=94.89  E-value=0.013  Score=37.12  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      ++.|..+|+ .|.+|+.|++||+.++||+=.|+=
T Consensus         5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~   37 (43)
T 2g3q_A            5 SLAVEELSG-MGFTEEEAHNALEKCNWDLEAATN   37 (43)
T ss_dssp             HHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHH
Confidence            455777665 799999999999999999977653

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.49  E-value=0.037  Score=38.38  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      ++++.|..+|+ .|.+|+.|++||+.++||+=.|+=
T Consensus         8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e   42 (63)
T 1wji_A            8 VDEKALKHITE-MGFSKEASRQALMDNGNNLEAALN   42 (63)
T ss_dssp             SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence            56777887775 799999999999999999876654

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.90  E-value=0.054  Score=37.19  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=28.8

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      ++++-|..+|+ .|.+|+.|++||+.++|++=.|+-
T Consensus         8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e   42 (63)
T 2dak_A            8 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD   42 (63)
T ss_dssp             CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            56677877776 799999999999999999765653

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.70  E-value=0.043  Score=38.61  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=27.1

Q ss_pred             cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  199 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI  199 (204)
                      ++.|+.|+ -.|.|+..|++|||.++|+|-.|.
T Consensus        20 ~e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa   51 (63)
T 1wgn_A           20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQIL   51 (63)
T ss_dssp             HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence            45677777 468999999999999999997774

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=93.54  E-value=0.078  Score=37.70  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=30.3

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      .++++.|..+| ..|.+|..|++||+.++|++=.|+=
T Consensus        27 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave   62 (73)
T 1wiv_A           27 DIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATD   62 (73)
T ss_dssp             SSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHH
Confidence            46777887777 4799999999999999999977764

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.24  E-value=0.12  Score=35.80  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=28.2

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCC-cHHHHH
Q 028782          165 VEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  199 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AI  199 (204)
                      ++++.|..+|+ .|.+|..|++||+.++| ++=.|+
T Consensus        18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~   52 (64)
T 2cpw_A           18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC   52 (64)
T ss_dssp             SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHH
Confidence            45667877776 89999999999999998 886665

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=93.20  E-value=0.11  Score=35.88  Aligned_cols=35  Identities=31%  Similarity=0.469  Sum_probs=29.4

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHc-CCcHHHHH
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAA-DGDIVSAI  199 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~-~GDIV~AI  199 (204)
                      .++++-|..+|+ .|.+|..|++||+.+ +|++=.|+
T Consensus         7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~   42 (64)
T 1whc_A            7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAM   42 (64)
T ss_dssp             CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHH
Confidence            467788888775 899999999999999 79986664

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=92.98  E-value=0.092  Score=37.61  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=29.5

Q ss_pred             CcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782          166 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME  201 (204)
Q Consensus       166 ~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~  201 (204)
                      .++.|..+|+ .|.+|+.|++||+.++||+=.|+=-
T Consensus        29 ~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~   63 (73)
T 1vg5_A           29 SEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEI   63 (73)
T ss_dssp             CHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred             cHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            4667888876 7999999999999999999777643

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.86  E-value=0.11  Score=38.18  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  199 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI  199 (204)
                      .++++-|..+|. .|.+|..|++||+.++||+=.|+
T Consensus        27 ~~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~   61 (83)
T 1veg_A           27 SPSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAA   61 (83)
T ss_dssp             CCCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence            346778888875 69999999999999999986665

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.60  E-value=0.14  Score=37.43  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  199 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI  199 (204)
                      .++++-|..+|+ .|.+|..|++||+.++|++=.|+
T Consensus        27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~   61 (83)
T 2dai_A           27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAM   61 (83)
T ss_dssp             SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence            467788888876 89999999999999999986665

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.44  E-value=0.17  Score=34.52  Aligned_cols=29  Identities=41%  Similarity=0.437  Sum_probs=24.9

Q ss_pred             cHHHHHHhhCCCHHHHHHHHHHcCCcHHHH
Q 028782          169 DIELVMTQAGVSRAKAVKALKAADGDIVSA  198 (204)
Q Consensus       169 DIeLVm~QagvSr~kAvkALke~~GDIV~A  198 (204)
                      -|+..|++ |.||+.|++||.-++|||--|
T Consensus        12 ~I~~L~~l-GF~r~~ai~AL~~a~nnve~A   40 (53)
T 2d9s_A           12 EIERLMSQ-GYSYQDIQKALVIAHNNIEMA   40 (53)
T ss_dssp             HHHHHHHH-TCCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHhcCCHHHH
Confidence            48888864 999999999999999999544

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.22  E-value=0.14  Score=32.98  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=28.0

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  199 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI  199 (204)
                      .++++.|..+|+ .|.+|+.|++||+.+ |++=.|+
T Consensus         7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~   40 (47)
T 2ekk_A            7 GVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQAT   40 (47)
T ss_dssp             SSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHH
Confidence            567788888877 899999999999999 4765554

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=92.11  E-value=0.1  Score=34.26  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=25.5

Q ss_pred             ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      +.|..+| ..|.+|+.|++||+.++||+=.|+=
T Consensus        10 ~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~e   41 (49)
T 1ify_A           10 TMLTEIM-SMGYERERVVAALRASYNNPHRAVE   41 (49)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHHH
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHH
Confidence            4455554 4699999999999999999877753

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=92.08  E-value=0.16  Score=33.71  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=28.5

Q ss_pred             cccHHHHHHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782          167 PKDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       167 eeDIeLVm~Qagv-Sr~kAvkALke~~GDIV~AIM~L  202 (204)
                      +..|..+++ .|. +|..+++||+.++||+=.||--|
T Consensus        13 ~~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L   48 (52)
T 2jy5_A           13 QQQLEQLSA-MGFLNREANLQALIATGGDINAAIERL   48 (52)
T ss_dssp             HHHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            446666664 689 99999999999999998887654

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=91.87  E-value=0.16  Score=33.80  Aligned_cols=33  Identities=36%  Similarity=0.507  Sum_probs=26.5

Q ss_pred             cHHHHHHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782          169 DIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       169 DIeLVm~Qagv-Sr~kAvkALke~~GDIV~AIM~L  202 (204)
                      .|..++ ..|. +|..|++||+.++||+=.||--|
T Consensus        14 ~l~~L~-~MGF~~~~~~~~AL~~t~gnve~Ave~L   47 (53)
T 2knz_A           14 QLEQLN-SMGFINREANLQALIATGGDINAAIERL   47 (53)
T ss_dssp             HHHHHH-TTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            455555 4588 99999999999999998887544

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.31  E-value=0.2  Score=35.64  Aligned_cols=35  Identities=17%  Similarity=0.201  Sum_probs=28.0

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCC-cHHHHH
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  199 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AI  199 (204)
                      .++++-|..+|+ .|.+|..|++||+.++| ++=.|+
T Consensus         7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~   42 (74)
T 2dag_A            7 GLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAM   42 (74)
T ss_dssp             SSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence            356667777776 89999999999999997 776554

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=91.30  E-value=0.33  Score=33.64  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCC-cHHHHH
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  199 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AI  199 (204)
                      ..+++.|.-+++ .|.+|+.|++||+.++| ++=.|+
T Consensus         7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~   42 (64)
T 2crn_A            7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL   42 (64)
T ss_dssp             CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence            356778888777 89999999999999987 776554

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=91.15  E-value=0.24  Score=32.18  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             cHHHHHHhhCCC-HHHHHHHHHHcCCcHHHHHhhh
Q 028782          169 DIELVMTQAGVS-RAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       169 DIeLVm~QagvS-r~kAvkALke~~GDIV~AIM~L  202 (204)
                      -|.-++ ..|.+ |..+++||+.++||+=.||--|
T Consensus        10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L   43 (46)
T 2bwb_A           10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL   43 (46)
T ss_dssp             HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            344444 46875 7888999999999998888655

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=90.50  E-value=0.22  Score=33.83  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHH
Q 028782          168 KDIELVMTQAGVSRAKAVKALKAADGDIVSA  198 (204)
Q Consensus       168 eDIeLVm~QagvSr~kAvkALke~~GDIV~A  198 (204)
                      +-|+-.|+ .|.||+.|++||+-++|||--|
T Consensus        13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A   42 (52)
T 2ooa_A           13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA   42 (52)
T ss_dssp             HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence            56777776 4999999999999999998443

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.32  E-value=0.21  Score=33.60  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=25.5

Q ss_pred             ccHHHHHHhhCCCHHH-HHHHHHHcCCcHHHHHhhh
Q 028782          168 KDIELVMTQAGVSRAK-AVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       168 eDIeLVm~QagvSr~k-AvkALke~~GDIV~AIM~L  202 (204)
                      +-|..++ ..|.++.. +++||+.++|||=.||--|
T Consensus        11 ~~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L   45 (54)
T 2dah_A           11 VQLEQLR-SMGFLNREANLQALIATGGDVDAAVEKL   45 (54)
T ss_dssp             HHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            3455544 55997765 6999999999998887655

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=89.52  E-value=0.36  Score=32.94  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             cHHHHHHhhCCC-HHHHHHHHHHcCCcHHHHHhhh
Q 028782          169 DIELVMTQAGVS-RAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       169 DIeLVm~QagvS-r~kAvkALke~~GDIV~AIM~L  202 (204)
                      -|..++ ..|.+ |..+++||+.++|||=.||--|
T Consensus        20 qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L   53 (58)
T 1wr1_B           20 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL   53 (58)
T ss_dssp             HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            455544 45875 8888999999999998887655

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=89.42  E-value=0.4  Score=30.20  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=28.6

Q ss_pred             cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       169 DIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      -|.-.++-|||++..|+..|..+++|+-.||-
T Consensus         8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~   39 (46)
T 1v92_A            8 ALREFVAVTGAEEDRARFFLESAGWDLQIALA   39 (46)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence            46777888999999999999999999988874

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=88.48  E-value=0.44  Score=36.42  Aligned_cols=37  Identities=19%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      ++++-|.-+|+ .|++|..|++||+.++||+-.|+=-|
T Consensus        77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L  113 (126)
T 2lbc_A           77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWI  113 (126)
T ss_dssp             CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            56667877776 79999999999999999997776433

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=87.22  E-value=0.7  Score=33.75  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             CcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782          166 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  199 (204)
Q Consensus       166 ~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI  199 (204)
                      +++-|..+++ .|.+|..|++||+.++|++=.|+
T Consensus        21 n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~   53 (85)
T 2dkl_A           21 MSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAM   53 (85)
T ss_dssp             HHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred             CHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence            3455666665 79999999999999999997776

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=85.96  E-value=0.82  Score=32.75  Aligned_cols=35  Identities=37%  Similarity=0.519  Sum_probs=27.2

Q ss_pred             cccHHHHHHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782          167 PKDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       167 eeDIeLVm~Qagv-Sr~kAvkALke~~GDIV~AIM~L  202 (204)
                      ++-|..++ ..|. .|..+++||+.++|||=.||=-|
T Consensus        30 e~qi~qL~-eMGF~dr~~~~~AL~~t~Gnve~Ave~L   65 (74)
T 1vej_A           30 QQELEELK-ALGFANRDANLQALVATDGDIHAAIEML   65 (74)
T ss_dssp             HHHHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            34566665 4587 58999999999999998887554

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=85.92  E-value=0.88  Score=33.03  Aligned_cols=36  Identities=14%  Similarity=0.180  Sum_probs=29.1

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcC-CcHHHHH
Q 028782          163 TGVEPKDIELVMTQAGVSRAKAVKALKAAD-GDIVSAI  199 (204)
Q Consensus       163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~-GDIV~AI  199 (204)
                      ..++++-|..+|+ .|.+|..|++||+.++ |++=.|+
T Consensus        26 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~   62 (84)
T 1vek_A           26 PVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAM   62 (84)
T ss_dssp             CCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred             CCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHH
Confidence            3466778888876 8999999999999985 6886664

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.39  E-value=1  Score=30.71  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=30.2

Q ss_pred             ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782          168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIME  201 (204)
Q Consensus       168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~  201 (204)
                      +-|.-.|.-|||++..|+..|..+++|+-.||-.
T Consensus        17 e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~   50 (62)
T 2dal_A           17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTM   50 (62)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            4588888999999999999999999999998853

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=83.58  E-value=1.3  Score=29.20  Aligned_cols=29  Identities=41%  Similarity=0.433  Sum_probs=24.4

Q ss_pred             cHHHHHHhhCCCHHHHHHHHHHcCCcHHHH
Q 028782          169 DIELVMTQAGVSRAKAVKALKAADGDIVSA  198 (204)
Q Consensus       169 DIeLVm~QagvSr~kAvkALke~~GDIV~A  198 (204)
                      -|...|++ |.||+.|++||--+++||--|
T Consensus         7 ~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A   35 (46)
T 2oo9_A            7 EIENLMSQ-GYSYQDIQKALVIAQNNIEMA   35 (46)
T ss_dssp             HHHHHHHT-TBCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHhhccHHHH
Confidence            46666664 999999999999999999665

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=83.54  E-value=0.89  Score=32.07  Aligned_cols=33  Identities=33%  Similarity=0.489  Sum_probs=23.6

Q ss_pred             cHHHHHHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782          169 DIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       169 DIeLVm~Qagv-Sr~kAvkALke~~GDIV~AIM~L  202 (204)
                      -|..++ ..|. .|...++||+.++|||-.||=-|
T Consensus        22 ql~qL~-~MGF~d~~an~~AL~at~Gnve~Ave~L   55 (67)
T 2dna_A           22 EMECLQ-AMGFVNYNANLQALIATDGDTNAAIYKL   55 (67)
T ss_dssp             HHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            344444 3575 55566999999999998887554

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=83.36  E-value=1.1  Score=34.56  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=21.8

Q ss_pred             hCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          177 AGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       177 agvSr~kAvkALke~~GDIV~AIM  200 (204)
                      .|.++..|++||+.|+||+=.|+=
T Consensus        86 MGF~~~~a~~AL~~~~nd~erAle  109 (118)
T 4ae4_A           86 MGFELKDIKEVLLLHNNDQDNALE  109 (118)
T ss_dssp             TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred             cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            599999999999999999988863

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.61  E-value=1.5  Score=30.36  Aligned_cols=33  Identities=24%  Similarity=0.245  Sum_probs=29.6

Q ss_pred             cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782          169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIME  201 (204)
Q Consensus       169 DIeLVm~QagvSr~kAvkALke~~GDIV~AIM~  201 (204)
                      -|.-.|.-|||++..|+..|..+++|+-.||-.
T Consensus        20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~   52 (66)
T 2dzl_A           20 MINQFVLAAGCAADQAKQLLQAAHWQFETALST   52 (66)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            488888999999999999999999999888753

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=82.54  E-value=1.1  Score=29.66  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             cccHHHHHHhh-CCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          167 PKDIELVMTQA-GVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       167 eeDIeLVm~Qa-gvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      +++|.+.++=. +|++..++.+|+.++||+=.||-.|
T Consensus         5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L   41 (49)
T 1otr_A            5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL   41 (49)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            46788888775 9999999999999999998877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	95.61
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	94.67
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	93.95
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	93.68
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	93.59
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	93.49
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	93.15
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	93.12
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	92.98
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	92.91
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	90.39
d1eeja2	60	Disulfide bond isomerase, DsbC, N-terminal domain	89.83
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	89.5
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	88.48
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	88.39
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	82.59

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0073  Score=39.70  Aligned_cols=39  Identities=26%  Similarity=0.343  Sum_probs=36.2

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      .|+.++|+-+=++||++--...+||.+++|||-.||--|
T Consensus         2 ~is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~L   40 (54)
T d1efub3           2 EITASLVKELRERTGAGMMDCKKALTEANGDIELAIENM   40 (54)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            478889999999999999999999999999999998766

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.67  E-value=0.016  Score=39.72  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=30.7

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      .++++-|..+|+ .|.||..|++||+.++|+|=.||=
T Consensus        27 ~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~   62 (73)
T d1wiva_          27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATD   62 (73)
T ss_dssp             SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             CCCHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            466778888885 899999999999999999877763

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=93.95  E-value=0.022  Score=35.71  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=21.0

Q ss_pred             hCCCHHHHHHHHHHcCCcHHHHH
Q 028782          177 AGVSRAKAVKALKAADGDIVSAI  199 (204)
Q Consensus       177 agvSr~kAvkALke~~GDIV~AI  199 (204)
                      .|.++++|++||+++|+|+-.|.
T Consensus        14 MGF~e~~A~~AL~k~~wnleaAt   36 (43)
T d2g3qa1          14 MGFTEEEAHNALEKCNWDLEAAT   36 (43)
T ss_dssp             TTSCHHHHHHHHHHHTSCHHHHH
T ss_pred             cCCCHHHHHHHHHHcCCCHHHHH
Confidence            59999999999999999997775

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.014  Score=35.98  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=25.6

Q ss_pred             HHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          170 IELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       170 IeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      |.-+|+ .|.||+.|++||+.++|++-.||=-|
T Consensus         8 i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~L   39 (41)
T d1oqya1           8 LTEIMS-MGYERERVVAALRASYNNPHRAVEYL   39 (41)
T ss_dssp             HHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred             HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            444443 79999999999999999998887443

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.032  Score=37.01  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      ++++++-|..+|+ .|.+|..|++||+.++|++-.|+-
T Consensus         6 ~~~d~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~   42 (63)
T d1wjia_           6 SGVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALN   42 (63)
T ss_dssp             CSSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             CccCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence            4567777776665 599999999999999999977764

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.49  E-value=0.04  Score=39.57  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME  201 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~  201 (204)
                      .+=|+.||+=||||.++|+=||-.+|||+-.||=-
T Consensus        33 ~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~   67 (91)
T d1wj7a1          33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINV   67 (91)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHH
Confidence            35688999999999999999999999999777643

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.15  E-value=0.044  Score=34.32  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782          169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIME  201 (204)
Q Consensus       169 DIeLVm~QagvSr~kAvkALke~~GDIV~AIM~  201 (204)
                      =|.-.|+=||||++.|+.-|..+++|+=.||-.
T Consensus         8 lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~   40 (46)
T d1v92a_           8 ALREFVAVTGAEEDRARFFLESAGWDLQIALAS   40 (46)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHH
Confidence            466778899999999999999999999998853

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.12  E-value=0.054  Score=36.04  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=29.5

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcCC-cHHHHH
Q 028782          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  199 (204)
Q Consensus       163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AI  199 (204)
                      .+++++-|.-++ ..|+||+.|++||+.++| ++=.|+
T Consensus         6 s~~d~~~l~~L~-~MGF~~~~a~~AL~~t~n~~~e~A~   42 (64)
T d1whca_           6 SGAELTALESLI-EMGFPRGRAEKALALTGNQGIEAAM   42 (64)
T ss_dssp             CCCCCCHHHHHH-TTTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CccCHHHHHHHH-HcCCCHHHHHHHHHHhCCCCHHHHH
Confidence            467778888777 589999999999999976 776664

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.98  E-value=0.06  Score=34.85  Aligned_cols=34  Identities=24%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       169 DIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      .|+-.=++||++--...+||.++||||-.||=-|
T Consensus         5 lvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~L   38 (52)
T d1aipc1           5 LIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4566668999999999999999999999997544

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.91  E-value=0.071  Score=35.02  Aligned_cols=36  Identities=25%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      .+-|+-+=++||++--...+||.++||||-.||--|
T Consensus         5 ~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~L   40 (56)
T d1xb2b1           5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL   40 (56)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            345666778999999999999999999999998765

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.2  Score=31.93  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=26.9

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCC-cHHHHH
Q 028782          165 VEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  199 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AI  199 (204)
                      .++..|..+++ .|.|++.|++||+.++| +|=.|+
T Consensus        11 ~~~~~l~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~   45 (51)
T d2cpwa1          11 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC   45 (51)
T ss_dssp             SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHHCCCCHHHHH
Confidence            34667777775 89999999999999877 875554

>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: DsbC/DsbG N-terminal domain-like
family: DsbC/DsbG N-terminal domain-like
domain: Disulfide bond isomerase, DsbC, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.39  Score=31.26  Aligned_cols=43  Identities=21%  Similarity=0.478  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHcCCc-------ccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccc
Q 028782           66 EKKSRKAMLKLGMK-------PIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA  119 (204)
Q Consensus        66 eKK~rk~mkKLGlk-------~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGea  119 (204)
                      +..+|+.|.++|++       +|+|.-+|++  +++ +|.+       +. .-.|+|.|..
T Consensus         2 ea~i~~~L~~~~~~v~sV~~spi~GlyeV~~--~~~-i~Yv-------s~-dG~y~i~G~l   51 (60)
T d1eeja2           2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSG-VLYI-------TD-DGKHIIQGPM   51 (60)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTE-EEEE-------ET-TSCEEEESCE
T ss_pred             HHHHHHHHHhcCCceeEEecCCCCCeEEEEE--CCE-EEEE-------cC-CCCEEEEeEE
Confidence            56688899999998       7999988876  334 3333       32 2347777763

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.50  E-value=0.14  Score=34.76  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=29.0

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  199 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI  199 (204)
                      .++++.|..+| ..|.+|+.|++||+.++|+|=.||
T Consensus        27 ~~~ee~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~   61 (73)
T d1vg5a_          27 AASEEQIQKLV-AMGFDRTQVEVALAAADDDLTVAV   61 (73)
T ss_dssp             CCCHHHHHHHH-TTTCCHHHHHHHHHHHTSCHHHHH
T ss_pred             CcCHHHHHHHH-HhCCCHHHHHHHHHHhCCCHHHHH
Confidence            45677888765 579999999999999999986665

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.17  Score=33.48  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=25.3

Q ss_pred             cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      ++-|..+| ..|.+|+.|++||+.++|++=.|+-
T Consensus        20 e~~v~~L~-~MGF~~~~a~~AL~~~~~n~e~A~~   52 (63)
T d1wgna_          20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQILD   52 (63)
T ss_dssp             HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHH
Confidence            33455444 4699999999999999999766653

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.32  Score=30.76  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=24.2

Q ss_pred             cccHHHHHHhhCCCHHHHHHHHHHcC-CcHHHHH
Q 028782          167 PKDIELVMTQAGVSRAKAVKALKAAD-GDIVSAI  199 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~-GDIV~AI  199 (204)
                      |+-|..++ .-|.||..|+|||+.++ +++=.|+
T Consensus         3 p~~v~~L~-~MGF~~~~a~~Al~~t~n~~ve~A~   35 (51)
T d2crna1           3 PSLLEPLL-AMGFPVHTALKALAATGRKTAEEAL   35 (51)
T ss_dssp             CSSHHHHH-HTSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHHCCCCHHHHH
Confidence            44555555 58999999999999985 4876664

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.59  E-value=0.39  Score=29.16  Aligned_cols=28  Identities=29%  Similarity=0.413  Sum_probs=23.4

Q ss_pred             HHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782          174 MTQAGVSRAKAVKALKAADGDIVSAIME  201 (204)
Q Consensus       174 m~QagvSr~kAvkALke~~GDIV~AIM~  201 (204)
                      +.++||..+-+++||+.+|+--++|-++
T Consensus         9 l~~aG~D~~m~iral~qt~~rsieaaie   36 (41)
T d2cosa1           9 LVNAGCDQEMAGRALKQTGSRSIEAALE   36 (41)
T ss_dssp             HHHHHCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHhCcccHHHHHH
Confidence            5689999999999999988876666554