Citrus Sinensis ID: 028830

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTETSQVH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHcHHHHcccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccccHHHEHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccEEEEEcccEEcHHccHHHHHHcccccccccccccEEEEEcHHHHHHHcccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mamtsdettkicshcdraipssnidlhfahcsrnlerckvcgdmvprkyaeehflnthapvacsqcsETMEREILAIhkgencpqrivtcdfcefplpavdlaehqevcgNRTELCHLCNRYIRLRErynhesrctgvpentvgssrnvraaesdqgahrrpappppnefyrKRFLLTIAITGIAVLLgslffprktetsqvh
Flexible Loop (DISEMBL)
MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRErynhesrctgvpentvgssrnvraaesdqgahrrpappppnEFYRKRFLLTIAITGIAVLLGslffprktetsqvh
Low Complexity Region (SEG)
MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTETSQVH
Disordered region (IsUnstruct)
**********ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHE***********************************************************************
Disordered Region (DISOPRED)
*****DE***ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHE*******************************************LLTIAITGIAVLLGSL************
Disordered Region (DISEMBL)
**********ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGS******************PPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTETSQVH
Disordered Region (DISPRO)
********TKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCT*******************QGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRK*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTETSQVH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q3UDK1	580	TRAF-type zinc finger dom	yes	no	0.660	0.231	0.348	1e-19
Q99MM4	576	TRAF-type zinc finger dom	yes	no	0.660	0.232	0.348	2e-19
Q6GPH4	301	XIAP-associated factor 1	yes	no	0.788	0.531	0.322	4e-19
Q58D05	580	TRAF-type zinc finger dom	yes	no	0.763	0.267	0.318	5e-19
Q4R970	582	TRAF-type zinc finger dom	N/A	no	0.635	0.221	0.338	4e-17
O14545	582	TRAF-type zinc finger dom	no	no	0.635	0.221	0.338	8e-17
Q58DH1	297	XIAP-associated factor 1	no	no	0.610	0.417	0.351	1e-14
Q5NBU8	273	XIAP-associated factor 1	no	no	0.551	0.410	0.298	2e-07
Q54C11	437	TNF receptor-associated f	yes	no	0.354	0.164	0.310	0.0003
Q55A66	1084	TNF receptor-associated f	no	no	0.467	0.087	0.235	0.0009

>sp|Q3UDK1|TRAD1_MOUSE TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 6   DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQ 65
           D+ +++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +
Sbjct: 7   DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTC-K 65

Query: 66  CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRL 125
           C++ +E+  L  H    CP R+  C  C+  L  V L EH++ CG RTELC  C R + +
Sbjct: 66  CNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLV 125

Query: 126 RERYNHESRCTGVPE 140
           +E   H   C  V E
Sbjct: 126 KELKTHPEVCGRVEE 140

Negative feedback regulator that controls excessive innate immune responses. Regulates both Toll-like receptor 4 (TLR4) and DDX58/RIG1-like helicases (RLH) pathways. May inhibit the LTR pathway by direct interaction with TRAF6 and attenuation of NF-kappa-B activation. May negatively regulate the RLH pathway downstream from MAVS and upstream of NF-kappa-B and IRF3.
Mus musculus (taxid: 10090)

>sp|Q99MM4|TRAD1_RAT TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 6   DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQ 65
           D+  ++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +
Sbjct: 7   DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTC-K 65

Query: 66  CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRL 125
           C++ +E+  L  H    CP R+  C  C+  L  V L EH++ CG RTELC  C R + +
Sbjct: 66  CNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLV 125

Query: 126 RERYNHESRCTGVPE 140
           +E   H + C  V E
Sbjct: 126 KELQTHPAVCGRVEE 140

Negative feedback regulator that controls excessive innate immune responses. Regulates both Toll-like receptor 4 (TLR4) and DDX58/RIG1-like helicases (RLH) pathways. May inhibit the LTR pathway by direct interaction with TRAF6 and attenuation of NF-kappa-B activation. May negatively regulate the RLH pathway downstream from MAVS and upstream of NF-kappa-B and IRF3.

Rattus norvegicus (taxid: 10116)

>sp|Q6GPH4|XAF1_HUMAN XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 11  ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETM 70
           +C +C R + S+N  LH A+C R L  C  C + VP++  EEH    H  V C+ C ++M
Sbjct: 7   VCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQSM 66

Query: 71  EREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYN 130
           ++  L  HK   C +R V C FC+  +    L  H+  CG+RTELC  C ++I  R    
Sbjct: 67  QKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQGCGQFIMHRMLAQ 126

Query: 131 HESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFY 171
           H   C    +  +G    + A E +   H      P N+++
Sbjct: 127 HRDVCRS-EQAQLGKGERISAPEREIYCHYCNQMIPENKYF 166

Seems to function as a negative regulator of members of the IAP (inhibitor of apoptosis protein) family. Inhibits anti-caspase activity of BIRC4. Induces cleavage and inactivation of BIRC4 independent of caspase activation. Mediates TNF-alpha-induced apoptosis and is involved in apoptosis in trophoblast cells. May inhibit BIRC4 indirectly by activating the mitochondrial apoptosis pathway. After translocation to mitochondra, promotes translocation of BAX to mitochondria and cytochrome c release from mitochondria. Seems to promote the redistribution of BIRC4 from the cytoplasm to the nucleus, probably independent of BIRC4 inactivation which seems to occur in the cytoplasm. The BIRC4-XAF1 complex mediates down-regulation of BIRC5/survivin; the process requires the E3 ligase activity of BIRC4. Seems to be involved in cellular sensitivity to the proapoptotic actions of TRAIL. May be a tumor suppressor by mediating apoptosis resistance of cancer cells.

Homo sapiens (taxid: 9606)

>sp|Q58D05|TRAD1_BOVIN TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 5   SDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACS 64
           +D+ T++C +C + IP  N  +H  HC RN+  C VC +  P+   E H    H  V C 
Sbjct: 6   NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTC- 64

Query: 65  QCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIR 124
           +C++ +E+  L  H+   CP R+  C  C+  L  + L +H++ CG RTELC  C R + 
Sbjct: 65  KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVL 124

Query: 125 LRERYNHESRCT-GVPENTVGSSRNVRAAESDQGAHR 160
           +++   H   C   V E  V ++    A +   G  R
Sbjct: 125 VKDLKTHPEVCGRDVEEKRVEAAMPPNAYDESWGPDR 161

Negative feedback regulator that controls excessive innate immune responses. Regulates both Toll-like receptor 4 (TLR4) and DDX58/RIG1-like helicases (RLH) pathways. May inhibit the LTR pathway by direct interaction with TRAF6 and attenuation of NF-kappa-B activation. May negatively regulate the RLH pathway downstream from MAVS and upstream of NF-kappa-B and IRF3.

Bos taurus (taxid: 9913)

>sp|Q4R970|TRAD1_MACFA TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 6   DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQ 65
           D+ T++C +C + IP  N  +H  HC RN+  C +C +  P+   E H    H  V C +
Sbjct: 7   DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTC-K 65

Query: 66  CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRL 125
           C++ +E+ +L  H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +
Sbjct: 66  CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 125

Query: 126 RERYNHESRC 135
           ++   H   C
Sbjct: 126 KDLKTHPEVC 135

Negative feedback regulator that controls excessive innate immune responses. Regulates both Toll-like receptor 4 (TLR4) and DDX58/RIG1-like helicases (RLH) pathways. May inhibit the LTR pathway by direct interaction with TRAF6 and attenuation of NF-kappa-B activation. May negatively regulate the RLH pathway downstream from MAVS and upstream of NF-kappa-B and IRF3.

Macaca fascicularis (taxid: 9541)

>sp|O14545|TRAD1_HUMAN TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 6   DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQ 65
           D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H  V C +
Sbjct: 7   DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-K 65

Query: 66  CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRL 125
           C++ +E+ +L  H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +
Sbjct: 66  CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 125

Query: 126 RERYNHESRC 135
           ++   H   C
Sbjct: 126 KDLKTHPEVC 135

Negative feedback regulator that controls excessive innate immune responses. Regulates both Toll-like receptor 4 (TLR4) and DDX58/RIG1-like helicases (RLH) pathways. May inhibit the LTR pathway by direct interaction with TRAF6 and attenuation of NF-kappa-B activation. May negatively regulate the RLH pathway downstream from MAVS and upstream of NF-kappa-B and IRF3.

Homo sapiens (taxid: 9606)

>sp|Q58DH1|XAF1_BOVIN XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 4/128 (3%)

Query: 10  KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSET 69
           ++C +C R + S+++ LH AHC   L  C  C + V +   EEH    H  V C+ C ++
Sbjct: 6   QVCRNCKRRVASNHLGLHEAHCLMYLVLCPECKEPVLQHEMEEHCQGGHQQVGCAMCQQS 65

Query: 70  MEREILAIHKGENCPQRIVTCDFCEFP--LPAVDLAEHQEVCGNRTELCHLCNRYIRLRE 127
           + +  L  H+ + C +R V C FC+    L  VDL EH   CG +TELC  C +++ LR 
Sbjct: 66  VPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEHH--CGQQTELCPDCGQHVMLRV 123

Query: 128 RYNHESRC 135
              H   C
Sbjct: 124 LARHREEC 131

Seems to function as a negative regulator of members of the IAP (inhibitor of apoptosis protein) family. Inhibits anti-caspase activity of BIRC4. Induces cleavage and inactivation of BIRC4 independent of caspase activation. Mediates TNF-alpha-induced apoptosis and is involved in apoptosis in trophoblast cells. May inhibit BIRC4 indirectly by activating the mitochondrial apoptosis pathway. After translocation to mitochondra, promotes translocation of BAX to mitochondria and cytochrome c release from mitochondria. Seems to promote the redistribution of BIRC4 from the cytoplasm to the nucleus, probably independent of BIRC4 inactivation which seems to occur in the cytoplasm. The BIRC4-XAF1 complex mediates down-regulation of BIRC5/survivin; the process requires the E3 ligase activity of BIRC4. Seems to be involved in cellular sensitivity to the proapoptotic actions of TRAIL. May be a tumor suppressor by mediating apoptosis resistance of cancer cells.

Bos taurus (taxid: 9913)

>sp|Q5NBU8|XAF1_MOUSE XIAP-associated factor 1 OS=Mus musculus GN=Xaf1 PE=2 SV=3

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 22/134 (16%)

Query: 10  KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSET 69
           ++C +C R + S +  LH AHC R +  C  C + +P    +EH    H     SQ    
Sbjct: 6   QVCRNCKRNVASLHFMLHEAHCLRFIVLCPECEEPIPESKMKEHMEVVHQQTKESQ---- 61

Query: 70  MEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERY 129
                          Q    C FCE  +   +L  H+  CG+RTE C  CN+ I L+   
Sbjct: 62  ---------------QHPAKCKFCELAVQLSNLDVHESHCGSRTEHCPHCNQPITLQVLS 106

Query: 130 NHESRC---TGVPE 140
            H++ C    G PE
Sbjct: 107 QHKAMCLSAKGRPE 120

Seems to function as a negative regulator of members of the IAP (inhibitor of apoptosis protein) family. Inhibits anti-caspase activity of BIRC4. Induces cleavage and inactivation of BIRC4 independent of caspase activation. Mediates TNF-alpha-induced apoptosis and is involved in apoptosis in trophoblast cells. May inhibit BIRC4 indirectly by activating the mitochondrial apoptosis pathway. After translocation to mitochondra, promotes translocation of BAX to mitochondria and cytochrome c release from mitochondria. Seems to promote the redistribution of BIRC4 from the cytoplasm to the nucleus, probably independent of BIRC4 inactivation which seems to occur in the cytoplasm. The BIRC4-XAF1 complex mediates down-regulation of BIRC5/survivin; the process requires the E3 ligase activity of BIRC4. Seems to be involved in cellular sensitivity to the proapoptotic actions of TRAIL. May be a tumor suppressor by mediating apoptosis resistance of cancer cells.

Mus musculus (taxid: 10090)

>sp|Q54C11|Y3202_DICDI TNF receptor-associated factor family protein DDB_G0293202 OS=Dictyostelium discoideum GN=DDB_G0293202 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 23  NIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLN--THAPVACSQCSETMEREILAIHKG 80
           N+D H   C   LE C  C + + RK  EEH         + C +C  T+ER  +  H  
Sbjct: 153 NLDQHLQTCGFQLEDCPNCNNKIIRKSIEEHIDEECLKTKIKCLECGSTVERGDMDFHLD 212

Query: 81  ENCPQRIVTCDFCE 94
             CP  ++ C  C+
Sbjct: 213 NVCPNIVIPCILCD 226

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

>sp|Q55A66|Y2098_DICDI TNF receptor-associated factor family protein DDB_G0272098 OS=Dictyostelium discoideum GN=DDB_G0272098 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 10  KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLN--THAPVACSQCS 67
           K+   C + I  S +D H   C      C+ C +++ R   E H     +  P+ C  C 
Sbjct: 150 KLLKRCGK-INKSLLDEHDEQCLYQTITCEHCNELINRIDHEIHLSEWCSDIPIKCEDCK 208

Query: 68  ETMEREILAIHKGENCPQRIVTCDF----CEFPLPAVDLAEH 105
              +++ +  HK  NCP+ ++ C +    C+  L   ++++H
Sbjct: 209 HVFKKKYIQEHKESNCPESVIDCVYVAGGCQKKLKRYNMSKH 250

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
224063359	201	predicted protein [Populus trichocarpa]	0.980	0.990	0.790	5e-90
255572838	199	nucleic acid binding protein, putative [	0.980	1.0	0.758	3e-86
302142096	206	unnamed protein product [Vitis vinifera]	0.980	0.966	0.714	1e-83
388499446	203	unknown [Lotus japonicus]	1.0	1.0	0.714	5e-83
225459034	207	PREDICTED: XIAP-associated factor 1-like	0.980	0.961	0.710	2e-82
302142097	261	unnamed protein product [Vitis vinifera]	0.965	0.750	0.691	2e-81
225459028	212	PREDICTED: XIAP-associated factor 1-like	0.965	0.924	0.691	6e-81
351722506	199	uncharacterized protein LOC100306673 [Gl	0.980	1.0	0.689	1e-80
449436936	207	PREDICTED: XIAP-associated factor 1-like	0.980	0.961	0.710	3e-79
357466855	192	TRAF-type zinc finger domain-containing	0.945	1.0	0.655	5e-74

>gi|224063359|ref|XP_002301111.1| predicted protein [Populus trichocarpa] gi|222842837|gb|EEE80384.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 162/205 (79%), Positives = 180/205 (87%), Gaps = 6/205 (2%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           MA+ S+E+T ICSHCDRAIPSSNIDLH+AHC RNL++CK+CGDMVP+K+AEEHFLNTHAP
Sbjct: 1   MAVASEESTSICSHCDRAIPSSNIDLHYAHCFRNLKKCKICGDMVPKKHAEEHFLNTHAP 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           VACS CSETMEREILA+HKGENCPQRIVTC+FCEFPLPAVDLAEHQEVCGNRTELCH+CN
Sbjct: 61  VACSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHMCN 120

Query: 121 RYIRLRERYNHESRCTGVPENTVGSSRNVRAAE--SDQGAHRRPAPPPPNEFYRKRFLLT 178
           +YIRLRERYNHESRCTG+P+ TV SSR+VRAAE    QG  RR     P +F RKR L T
Sbjct: 121 KYIRLRERYNHESRCTGLPDTTVESSRDVRAAERRQPQGPQRR----QPQDFSRKRLLFT 176

Query: 179 IAITGIAVLLGSLFFPRKTETSQVH 203
           IAITGIAVLLGS  F +KTE SQVH
Sbjct: 177 IAITGIAVLLGSFLFQKKTEDSQVH 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572838|ref|XP_002527351.1| nucleic acid binding protein, putative [Ricinus communis] gi|223533270|gb|EEF35023.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/203 (75%), Positives = 175/203 (86%), Gaps = 4/203 (1%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           MA+ S+ETT +C+HC+RAIPS N DLH  HCSRNLE+CKVCGDM+P+K+ +EHF NTHAP
Sbjct: 1   MAVASEETTTMCNHCNRAIPSLNYDLHSVHCSRNLEKCKVCGDMIPKKHYDEHFSNTHAP 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           VACS CSETMERE+LAIHKGENCPQRIVTC+FCEFPLPA+DLAEHQEVCGNRTELCHLCN
Sbjct: 61  VACSLCSETMEREVLAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIA 180
           RYIRLRERYNHE RCTGV  N VG+SR+VRAAE  QGA RR    PP ++ R+R + TIA
Sbjct: 121 RYIRLRERYNHEIRCTGVTNNIVGTSRDVRAAERPQGAPRR----PPQDYSRRRLMFTIA 176

Query: 181 ITGIAVLLGSLFFPRKTETSQVH 203
           ITGIAV+LGSL F RKTE + VH
Sbjct: 177 ITGIAVILGSLLFQRKTENNPVH 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142096|emb|CBI19299.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/210 (71%), Positives = 175/210 (83%), Gaps = 11/210 (5%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           MA  S+E T ICSHCDR+IPS+NIDLH+ HCSRNLERCK CGDMVP+K+AEEH+LNTHA 
Sbjct: 1   MATASNEATSICSHCDRSIPSTNIDLHYVHCSRNLERCKHCGDMVPKKHAEEHYLNTHAS 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           V+CS CSETMEREILA+H+GENCPQRIVTC+FCEFPLPA+DL+EHQEVCGNRTELCHLC 
Sbjct: 61  VSCSLCSETMEREILAVHRGENCPQRIVTCEFCEFPLPAIDLSEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYNHESRC-------TGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRK 173
           RY+RLRER +HE+ C        GVP+NTV  SR+ RAAE +QG  RR    PP EF ++
Sbjct: 121 RYVRLRERNDHEANCNGVSYDSVGVPDNTVSPSRDARAAEREQGGRRR----PPQEFSQR 176

Query: 174 RFLLTIAITGIAVLLGSLFFPRKTETSQVH 203
           R L TIAITGIAV+LGSLFF RKTE +++H
Sbjct: 177 RVLFTIAITGIAVILGSLFFQRKTENTEMH 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499446|gb|AFK37789.1| unknown [Lotus japonicus]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 145/203 (71%), Positives = 175/203 (86%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           M   SD+ T +C+HCDRAIP++NIDLH  HC+RNLE+CKVCGDMVPRK+AE+H+L+THAP
Sbjct: 1   MEAGSDQATSVCTHCDRAIPAANIDLHSVHCARNLEKCKVCGDMVPRKHAEDHYLSTHAP 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           V+CS CSETM+R+IL IHKGENCPQRIVTC+FCEFPLPAVDLAEHQEVCGNRTELC+LCN
Sbjct: 61  VSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCN 120

Query: 121 RYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIA 180
           +Y+RLRER++HE+RC GV +NTVGSSR+VR AE D+G  RR   P  N+F  +R L+TIA
Sbjct: 121 KYVRLRERFSHEARCNGVQDNTVGSSRDVREAERDEGPPRRRPRPQQNDFSTRRLLITIA 180

Query: 181 ITGIAVLLGSLFFPRKTETSQVH 203
           ITGIAV+LGS+F  +K E S VH
Sbjct: 181 ITGIAVILGSIFLQKKAEPSDVH 203

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459034|ref|XP_002285623.1| PREDICTED: XIAP-associated factor 1-like [Vitis vinifera]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/211 (71%), Positives = 175/211 (82%), Gaps = 12/211 (5%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           MA  S+E T ICSHCDR+IPS+NIDLH+ HCSRNLERCK CGDMVP+K+AEEH+LNTHA 
Sbjct: 1   MATASNEATSICSHCDRSIPSTNIDLHYVHCSRNLERCKHCGDMVPKKHAEEHYLNTHAS 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           V+CS CSETMEREILA+H+GENCPQRIVTC+FCEFPLPA+DL+EHQEVCGNRTELCHLC 
Sbjct: 61  VSCSLCSETMEREILAVHRGENCPQRIVTCEFCEFPLPAIDLSEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYNHESRC-------TGVPENTVG-SSRNVRAAESDQGAHRRPAPPPPNEFYR 172
           RY+RLRER +HE+ C        GVP+NTV  S R+ RAAE +QG  RR    PP EF +
Sbjct: 121 RYVRLRERNDHEANCNGVSYDSVGVPDNTVSPSRRDARAAEREQGGRRR----PPQEFSQ 176

Query: 173 KRFLLTIAITGIAVLLGSLFFPRKTETSQVH 203
           +R L TIAITGIAV+LGSLFF RKTE +++H
Sbjct: 177 RRVLFTIAITGIAVILGSLFFQRKTENTEMH 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142097|emb|CBI19300.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 171/214 (79%), Gaps = 18/214 (8%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           MA+ S+E+T ICSHCD+AIPS+NIDLH+AHCSRNLERCK CGDMVP+K+AEEH+LNTHA 
Sbjct: 50  MAIASNESTSICSHCDKAIPSTNIDLHYAHCSRNLERCKHCGDMVPKKHAEEHYLNTHAA 109

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           V+CS CSETMEREILA+HKGENCPQRIVTC+FCEFPLPA+DL+EHQEVCGNRTELCHLC 
Sbjct: 110 VSCSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAIDLSEHQEVCGNRTELCHLCR 169

Query: 121 RYIRLRERYNHESRCTGVPENTVG---------------SSRNVRAAESDQGAHRRPAPP 165
           RY+RL ER  HE+ C G P+N+VG               S R+ RAAE +QG  RR   P
Sbjct: 170 RYVRLCERNGHEAMCNGAPDNSVGVQDNGVGVSDHTVSSSRRDARAAEREQGGQRR---P 226

Query: 166 PPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTET 199
           P   F ++R L TIAITGIAVLLGSLFF +KTE 
Sbjct: 227 PLQGFSQRRLLFTIAITGIAVLLGSLFFQKKTEN 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459028|ref|XP_002285617.1| PREDICTED: XIAP-associated factor 1-like isoform 1 [Vitis vinifera]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 171/214 (79%), Gaps = 18/214 (8%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           MA+ S+E+T ICSHCD+AIPS+NIDLH+AHCSRNLERCK CGDMVP+K+AEEH+LNTHA 
Sbjct: 1   MAIASNESTSICSHCDKAIPSTNIDLHYAHCSRNLERCKHCGDMVPKKHAEEHYLNTHAA 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           V+CS CSETMEREILA+HKGENCPQRIVTC+FCEFPLPA+DL+EHQEVCGNRTELCHLC 
Sbjct: 61  VSCSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAIDLSEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYNHESRCTGVPENTVG---------------SSRNVRAAESDQGAHRRPAPP 165
           RY+RL ER  HE+ C G P+N+VG               S R+ RAAE +QG  RR   P
Sbjct: 121 RYVRLCERNGHEAMCNGAPDNSVGVQDNGVGVSDHTVSSSRRDARAAEREQGGQRR---P 177

Query: 166 PPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTET 199
           P   F ++R L TIAITGIAVLLGSLFF +KTE 
Sbjct: 178 PLQGFSQRRLLFTIAITGIAVLLGSLFFQKKTEN 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722506|ref|NP_001238526.1| uncharacterized protein LOC100306673 [Glycine max] gi|255629243|gb|ACU14966.1| unknown [Glycine max]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/203 (68%), Positives = 166/203 (81%), Gaps = 4/203 (1%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           MA  SD+ T +C+HCDRAIPS+NIDLHF HCSRNLERC++C DM+P+  AEEH+LNTHAP
Sbjct: 1   MAAVSDQDTSVCTHCDRAIPSANIDLHFVHCSRNLERCQICDDMIPKLLAEEHYLNTHAP 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           VACS CSETMER+IL IH+ ENCP+R++TC+FCEFPLPA+DLAEHQEVCGNRTELCHLCN
Sbjct: 61  VACSLCSETMERDILDIHREENCPKRMITCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIA 180
           +Y+RLRE YNHE  C  + +N+ GSSR VR AE D+GA RRP     N+F  KR   TIA
Sbjct: 121 KYVRLRELYNHEDSCNTIQDNSAGSSRYVRPAERDEGARRRPQ----NDFSGKRLFFTIA 176

Query: 181 ITGIAVLLGSLFFPRKTETSQVH 203
            TGIAV+LGS+FF RKT+ S V 
Sbjct: 177 FTGIAVVLGSIFFQRKTDLSNVQ 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436936|ref|XP_004136248.1| PREDICTED: XIAP-associated factor 1-like isoform 1 [Cucumis sativus] gi|449436938|ref|XP_004136249.1| PREDICTED: XIAP-associated factor 1-like isoform 2 [Cucumis sativus] gi|449521888|ref|XP_004167961.1| PREDICTED: XIAP-associated factor 1-like isoform 1 [Cucumis sativus] gi|449521890|ref|XP_004167962.1| PREDICTED: XIAP-associated factor 1-like isoform 2 [Cucumis sativus]

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/211 (71%), Positives = 172/211 (81%), Gaps = 12/211 (5%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           MA+ S+ETT IC+HC R IPSSNIDLH  HC+RNLE+CK+CGDMVP+++AEEHFLNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           V+CS CSETMER+ILAIHKGENCPQRIVTC+FCEFPLPA+DLAEHQEVCGNRTELC LC 
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYNHESRCTGV--PENTVGSSRNVRAA------ESDQGAHRRPAPPPPNEFYR 172
            YIRLRERYNHE+ C G+   +N   SSR+V AA        D+GA RR     P EF  
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRR----QPQEFST 176

Query: 173 KRFLLTIAITGIAVLLGSLFFPRKTETSQVH 203
           +R + TIAITGIAVLLGSLFFPRKTE++ VH
Sbjct: 177 RRLIFTIAITGIAVLLGSLFFPRKTESNGVH 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466855|ref|XP_003603712.1| TRAF-type zinc finger domain-containing protein [Medicago truncatula] gi|355492760|gb|AES73963.1| TRAF-type zinc finger domain-containing protein [Medicago truncatula]

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 133/203 (65%), Positives = 157/203 (77%), Gaps = 11/203 (5%)

Query: 1   MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
           M    D+ T IC HCDRAIP++NIDLH  HC+RNLE+CK+CGDMVP+ +A++H+LNTHAP
Sbjct: 1   MTTMPDQATSICPHCDRAIPAANIDLHSVHCARNLEKCKLCGDMVPKIHAQDHYLNTHAP 60

Query: 61  VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
           VACS CSETMER IL IH+GE+CPQRIVTC+FCEFPLPA+DL EHQEVCGNRTE+C LCN
Sbjct: 61  VACSLCSETMERNILYIHEGESCPQRIVTCEFCEFPLPAIDLPEHQEVCGNRTEMCDLCN 120

Query: 121 RYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIA 180
           +Y+RLRERYNHE  C G+ +N  GSSRN R AE D            NE  ++R   TIA
Sbjct: 121 KYVRLRERYNHEFNCNGIQDNAAGSSRNERPAERDA-----------NESSKRRLFFTIA 169

Query: 181 ITGIAVLLGSLFFPRKTETSQVH 203
           ITGIAV+LGS+F  RK E S VH
Sbjct: 170 ITGIAVILGSIFIQRKAEPSNVH 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2024351	192	AT1G09920 [Arabidopsis thalian	0.940	0.994	0.668	4.3e-70
ZFIN|ZDB-GENE-060929-840	273	zgc:153893 "zgc:153893" [Danio	0.709	0.527	0.374	8.2e-28
UNIPROTKB|Q6GPH4	301	XAF1 "XIAP-associated factor 1	0.788	0.531	0.322	1.4e-23
UNIPROTKB|F8VNX8	283	TRAFD1 "TRAF-type zinc finger	0.635	0.455	0.338	2.3e-23
UNIPROTKB|F8VVF3	135	TRAFD1 "TRAF-type zinc finger	0.635	0.955	0.338	2.3e-23
UNIPROTKB|Q4R970	582	TRAFD1 "TRAF-type zinc finger	0.635	0.221	0.338	7.1e-23
UNIPROTKB|B4DI89	164	TRAFD1 "TRAF-type zinc finger	0.615	0.762	0.341	7.8e-23
UNIPROTKB|E1BQZ6	563	TRAFD1 "Uncharacterized protei	0.763	0.275	0.343	8.3e-23
UNIPROTKB|Q58D05	580	TRAFD1 "TRAF-type zinc finger	0.763	0.267	0.318	9e-23
ZFIN|ZDB-GENE-070410-43	565	zgc:162228 "zgc:162228" [Danio	0.699	0.251	0.354	1.4e-22

TAIR|locus:2024351 AT1G09920 [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 133/199 (66%), Positives = 153/199 (76%)

Query:     1 MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
             M   + E T +C+HCDR IPS NIDLH  HC+RNLE+CK+CGDMVP+K+AEEH+LNTHAP
Sbjct:     1 METATGEITIVCNHCDRDIPSLNIDLHRVHCARNLEKCKICGDMVPKKHAEEHYLNTHAP 60

Query:    61 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
             +ACS C ET+EREI   HKGE CP+RIVTC+FCEFPLPAVDLAEHQEVCGNRTELC+ CN
Sbjct:    61 IACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCN 120

Query:   121 RYIRLRERYNHESRCTGVPENTVGSSRNV-RAAESDQGAHRRPAPPPPNEFYRKRFLLTI 179
              Y+RLRERYNHE++C G    TV SSR + RAAE D    RR      N    KR   TI
Sbjct:   121 SYVRLRERYNHETKCPG----TVESSRRIPRAAEGDGNGRRRR---DGNGVSNKRLFFTI 173

Query:   180 AITGIAVLLGSLFFPRKTE 198
             AITGIAV++GSLFF RK E
Sbjct:   174 AITGIAVIIGSLFFQRKPE 192

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-060929-840 zgc:153893 "zgc:153893" [Danio rerio (taxid:7955)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 55/147 (37%), Positives = 83/147 (56%)

Query:     3 MTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVA 62
             M ++E   +C+HC++ +  +N DLH  HC R L +C  C D V R   EEH    HA V 
Sbjct:     1 MDTEEELVLCTHCNKDVAKANFDLHEPHCKRFLCKCPDCNDTVHRDQLEEHKTEQHAEVK 60

Query:    63 CSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRY 122
             C +C + MER  L  H+   CP+R   C+FC+  LP   L  H+  CG+RTE C  C++Y
Sbjct:    61 CKKCKKKMERRHLLDHENNECPERFEICEFCQLELPLSTLKVHKVSCGSRTERCSDCDQY 120

Query:   123 IRLRERYNHESRCTGVPENTVGSSRNV 149
             +++ ++ +H   C   P  T  +SR++
Sbjct:   121 VKMTDQIDHAQIC---PATTQTTSRDL 144

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6GPH4 XAF1 "XIAP-associated factor 1" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 52/161 (32%), Positives = 79/161 (49%)

Query:    11 ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETM 70
             +C +C R + S+N  LH A+C R L  C  C + VP++  EEH    H  V C+ C ++M
Sbjct:     7 VCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQSM 66

Query:    71 EREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYN 130
             ++  L  HK   C +R V C FC+  +    L  H+  CG+RTELC  C ++I  R    
Sbjct:    67 QKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQGCGQFIMHRMLAQ 126

Query:   131 HESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFY 171
             H   C    +  +G    + A E +   H      P N+++
Sbjct:   127 HRDVCRS-EQAQLGKGERISAPEREIYCHYCNQMIPENKYF 166

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0060337 "type I interferon-mediated signaling pathway" evidence=TAS

GO:0035456 "response to interferon-beta" evidence=IDA

UNIPROTKB|F8VNX8 TRAFD1 "TRAF-type zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 44/130 (33%), Positives = 69/130 (53%)

Query:     6 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQ 65
             D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H  V C +
Sbjct:     7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-K 65

Query:    66 CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRL 125
             C++ +E+ +L  H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +
Sbjct:    66 CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 125

Query:   126 RERYNHESRC 135
             ++   H   C
Sbjct:   126 KDLKTHPEVC 135

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=IEA

GO:0045824 "negative regulation of innate immune response" evidence=IEA

UNIPROTKB|F8VVF3 TRAFD1 "TRAF-type zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 44/130 (33%), Positives = 69/130 (53%)

Query:     6 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQ 65
             D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H  V C +
Sbjct:     7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-K 65

Query:    66 CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRL 125
             C++ +E+ +L  H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +
Sbjct:    66 CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 125

Query:   126 RERYNHESRC 135
             ++   H   C
Sbjct:   126 KDLKTHPEVC 135

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=IEA

GO:0045824 "negative regulation of innate immune response" evidence=IEA

UNIPROTKB|Q4R970 TRAFD1 "TRAF-type zinc finger domain-containing protein 1" [Macaca fascicularis (taxid:9541)]

 Score = 272 (100.8 bits), Expect = 7.1e-23, P = 7.1e-23
 Identities = 44/130 (33%), Positives = 70/130 (53%)

Query:     6 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQ 65
             D+ T++C +C + IP  N  +H  HC RN+  C +C +  P+   E H    H  V C +
Sbjct:     7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTC-K 65

Query:    66 CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRL 125
             C++ +E+ +L  H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +
Sbjct:    66 CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 125

Query:   126 RERYNHESRC 135
             ++   H   C
Sbjct:   126 KDLKTHPEVC 135

GO:0045824 "negative regulation of innate immune response" evidence=ISS

UNIPROTKB|B4DI89 TRAFD1 "TRAF-type zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 43/126 (34%), Positives = 68/126 (53%)

Query:     6 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQ 65
             D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H  V C +
Sbjct:     7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-K 65

Query:    66 CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRL 125
             C++ +E+ +L  H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +
Sbjct:    66 CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 125

Query:   126 RERYNH 131
             ++   H
Sbjct:   126 KDLKTH 131

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BQZ6 TRAFD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 8.3e-23, P = 8.3e-23
 Identities = 55/160 (34%), Positives = 82/160 (51%)

Query:     1 MAMTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP 60
             MA  ++  T++C +C + IP++N  +H  HCSRNLE C+ C + VP+   + H  + H  
Sbjct:     1 MAAVTEVQTQLCGNCKKDIPAANFTIHEIHCSRNLEVCRYCKESVPKSEMKNHIESEHVQ 60

Query:    61 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCN 120
             V C +CS  +E+ +L  H+   CP R   C  C+  L    L +H+  CG RTE+C  C 
Sbjct:    61 VTC-KCSMKVEKSLLEDHETSACPLRPAVCQHCDIQLTFNKLQDHESYCGARTEMCSGCG 119

Query:   121 RYIRLRERYNHESRCTGVPENTVGSSRNVRAAES-DQGAH 159
               I +++   H   C G     V  S+ V   E  D G H
Sbjct:   120 LNIMVKDLKEHPQVC-GKEAKRV--SKTVPHFEGEDAGLH 156

GO:0045824 "negative regulation of innate immune response" evidence=IEA

UNIPROTKB|Q58D05 TRAFD1 "TRAF-type zinc finger domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 9.0e-23, P = 9.0e-23
 Identities = 50/157 (31%), Positives = 79/157 (50%)

Query:     5 SDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACS 64
             +D+ T++C +C + IP  N  +H  HC RN+  C VC +  P+   E H    H  V C 
Sbjct:     6 NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTC- 64

Query:    65 QCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIR 124
             +C++ +E+  L  H+   CP R+  C  C+  L  + L +H++ CG RTELC  C R + 
Sbjct:    65 KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVL 124

Query:   125 LRERYNHESRC-TGVPENTVGSSRNVRAAESDQGAHR 160
             +++   H   C   V E  V ++    A +   G  R
Sbjct:   125 VKDLKTHPEVCGRDVEEKRVEAAMPPNAYDESWGPDR 161

GO:0045824 "negative regulation of innate immune response" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-070410-43 zgc:162228 "zgc:162228" [Danio rerio (taxid:7955)]

 Score = 269 (99.8 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 51/144 (35%), Positives = 74/144 (51%)

Query:     5 SDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACS 64
             ++E T+ CS+C   IP +N   H  HC RN+  C+VC +  P     +H    HA   C 
Sbjct:     2 AEENTQFCSNCKHNIPEANFTTHEIHCRRNIALCEVCQEPFPHAELVQHKEMDHAEEQC- 60

Query:    65 QCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIR 124
             +C   +E+  L  H+   C  R+V C FC+  L +    EH+E CG RTE C +C   + 
Sbjct:    61 KCGLKIEKRFLETHQRSECSHRLVPCQFCDLELASFQAKEHEEYCGTRTEPCPVCKCNVM 120

Query:   125 LRERYNHESRCTGV-PENTVGSSR 147
             LRE++ H + C  + P     SSR
Sbjct:   121 LREQHIHPALCGSLTPPEERHSSR 144

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003096203 hypothetical protein (201 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
PLN03086	567	PLN03086, PLN03086, PRLI-interacting factor K; Pro	4e-17

>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional

 Score = 78.4 bits (193), Expect = 4e-17
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 32/153 (20%)

Query: 6   DETTKICSHCDRAIPSSNIDLHFAHCSR--------------------NLERCKVCGDMV 45
           D  T  C +C   IPS +I LH A+CSR                    N   C+ CG   
Sbjct: 404 DVDTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAF 463

Query: 46  PRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFC-------EFPLP 98
            +   E+H    H P+ C  C   +E+E +  H+   CP R++TC FC          + 
Sbjct: 464 QQGEMEKHMKVFHEPLQCP-CGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMD 522

Query: 99  AVD----LAEHQEVCGNRTELCHLCNRYIRLRE 127
             D    ++EH+ +CG+RT  C  C R + L+E
Sbjct: 523 VRDRLRGMSEHESICGSRTAPCDSCGRSVMLKE 555

Length = 567

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.96
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.84
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.74
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.73
KOG3608	467	consensus Zn finger proteins [General function pre	99.72
KOG3576	267	consensus Ovo and related transcription factors [T	99.71
KOG3608	467	consensus Zn finger proteins [General function pre	99.68
PLN03086	567	PRLI-interacting factor K; Provisional	99.67
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.57
KOG3576	267	consensus Ovo and related transcription factors [T	99.55
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.53
PLN03086	567	PRLI-interacting factor K; Provisional	99.24
PHA00733	128	hypothetical protein	99.2
KOG3993	500	consensus Transcription factor (contains Zn finger	98.93
PHA00733	128	hypothetical protein	98.85
PHA02768	55	hypothetical protein; Provisional	98.84
PHA02768	55	hypothetical protein; Provisional	98.71
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.53
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.47
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.47
KOG3993	500	consensus Transcription factor (contains Zn finger	98.38
PHA00616	44	hypothetical protein	98.28
PHA00616	44	hypothetical protein	98.26
PHA00732	79	hypothetical protein	98.24
PHA00732	79	hypothetical protein	98.07
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.85
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.61
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.48
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.44
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.21
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.2
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.17
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.08
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.07
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.89
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.88
smart00355	26	ZnF_C2H2 zinc finger.	96.51
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.47
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	96.26
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.24
PRK04860	160	hypothetical protein; Provisional	96.08
PRK04860	160	hypothetical protein; Provisional	95.98
smart00355	26	ZnF_C2H2 zinc finger.	95.96
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.83
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.79
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.71
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.51
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.12
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	95.0
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.99
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.65
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.31
KOG2186	276	consensus Cell growth-regulating nucleolar protein	94.14
KOG2186	276	consensus Cell growth-regulating nucleolar protein	93.67
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	93.57
COG4049	65	Uncharacterized protein containing archaeal-type C	93.11
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.73
KOG1146	1406	consensus Homeobox protein [General function predi	92.4
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	92.05
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.67
COG4049	65	Uncharacterized protein containing archaeal-type C	90.95
KOG2893	341	consensus Zn finger protein [General function pred	90.01
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	89.52
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	89.37
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	89.25
KOG1146	1406	consensus Homeobox protein [General function predi	89.07
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	88.44
KOG2893	341	consensus Zn finger protein [General function pred	88.1
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	88.1
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	87.59
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	87.55
COG5048	467	FOG: Zn-finger [General function prediction only]	87.34
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.03
PHA00626	59	hypothetical protein	86.85
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	86.79
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	86.67
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.1
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	85.05
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	84.63
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	84.5
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	84.4
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	83.8
PF08209	33	Sgf11: Sgf11 (transcriptional regulation protein);	83.68
COG5236	493	Uncharacterized conserved protein, contains RING Z	83.65
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	83.55
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	83.4
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	83.36
PF03145	198	Sina: Seven in absentia protein family; InterPro:	82.57
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	82.11
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	81.63
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	81.51
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	81.4
smart00531	147	TFIIE Transcription initiation factor IIE.	81.31
COG5048	467	FOG: Zn-finger [General function prediction only]	80.91
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.9
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	80.3
smart00531	147	TFIIE Transcription initiation factor IIE.	80.29

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.96  E-value=3.9e-30  Score=190.07  Aligned_cols=129  Identities=22%  Similarity=0.439  Sum_probs=120.0

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcC---CCcccccccccccccccHHHHHHcCCC-CccCccChhhhhH-HHHHhhH
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCS---RNLERCKVCGDMVPRKYAEEHFLNTHA-PVACSQCSETMER-EILAIHK   79 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~---~~~~~C~~C~~~f~~~~~~~~~~~~h~-~~~C~~C~~~f~~-~~l~~H~   79 (203)
                      ...|+|+.|++.+. .++|.+| +.|+.   .+.+.|++|++.|..-..|..|.++|+ +++|.+|||.|.+ +-|+.|+
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHi  207 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHI  207 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhccc
Confidence            44699999999998 9999999 89975   577999999999999988999999997 9999999999999 8999999


Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHHh-CCcceecccchhhcc-hhHHHHHHHhh
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEVC-GNRTELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~-~~~~~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      ++|+|||||.|+.|++.|. .++|+.|+++| +.++|+|+.|+|+|. .+-|.+|....
T Consensus       208 RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  208 RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             ccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence            9999999999999999999 99999999995 889999999999999 57899998654

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.84  E-value=7.8e-22  Score=146.23  Aligned_cols=100  Identities=20%  Similarity=0.457  Sum_probs=95.6

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC---CCccCccChhhhhH-HHHHhhHh
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH---APVACSQCSETMER-EILAIHKG   80 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~C~~~f~~-~~l~~H~~   80 (203)
                      .+.+.|+.|++.|. -..|+.| ++|+  -+++|.+||+.|.+.++|.-|.++|   |||.|..|++.|.. ++|+.|+.
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQ  236 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQ  236 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHH
Confidence            67899999999998 9999999 9997  6899999999999999999999999   69999999999988 89999999


Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHH
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +|.+.|.|.|+.|+|.|. .+.|.+|...
T Consensus       237 THS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  237 THSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             hhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            999999999999999999 9999999887

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.74  E-value=2.1e-19  Score=149.96  Aligned_cols=77  Identities=18%  Similarity=0.330  Sum_probs=65.0

Q ss_pred             cCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHhCCc-----ceecc---cchhhcch-hHHHH
Q 028830           62 ACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNR-----TELCH---LCNRYIRL-RERYN  130 (203)
Q Consensus        62 ~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~-----~~~C~---~C~~~f~~-~~l~~  130 (203)
                      +|-+|-++..= +.|+.|+++|+||+||+|.+||+.|. +.+|+.|+-+|..+     ++.|+   +|-+-|.. -.|-.
T Consensus       607 qCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQ  686 (958)
T KOG1074|consen  607 QCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLPQ  686 (958)
T ss_pred             ceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccccc
Confidence            79999888766 78999999999999999999999999 99999999887543     48899   99988885 58888


Q ss_pred             HHHhhcCC
Q 028830          131 HESRCTGV  138 (203)
Q Consensus       131 H~~~~~~~  138 (203)
                      |++.|...
T Consensus       687 hIriH~~~  694 (958)
T KOG1074|consen  687 HIRIHLGG  694 (958)
T ss_pred             eEEeecCC
Confidence            88877643

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.73  E-value=1.9e-18  Score=144.30  Aligned_cols=54  Identities=19%  Similarity=0.356  Sum_probs=48.3

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcCCCC
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTGVPE  140 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~  140 (203)
                      ...|..|++.|. .+.|..|+++ .++|||.|..|++.|. +.+|+.||.+|+..+.
T Consensus       879 ~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~  935 (958)
T KOG1074|consen  879 AHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQP  935 (958)
T ss_pred             hhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCC
Confidence            368999999999 9999999999 5999999999999998 6799999987766543

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.72  E-value=3.7e-18  Score=130.39  Aligned_cols=115  Identities=21%  Similarity=0.341  Sum_probs=61.2

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-Hhh--cCCCcccccccccccccccHHHHHHcCC-CCccCccChhhhhH-HHH
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAH--CSRNLERCKVCGDMVPRKYAEEHFLNTH-APVACSQCSETMER-EIL   75 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h--~~~~~~~C~~C~~~f~~~~~~~~~~~~h-~~~~C~~C~~~f~~-~~l   75 (203)
                      |.|++||.-.|+.|+..|. +..|-.| +..  ....+|.|..|.+.|.+..+|..|+..| ..|+|+.|..+... ++|
T Consensus       200 r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL  279 (467)
T KOG3608|consen  200 RTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSL  279 (467)
T ss_pred             HhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHH
Confidence            4566666666666666666 6666666 322  2334566666666666555555555544 24444444444443 444


Q ss_pred             HhhHhc-cCCCCcccCccCCCCCC-hhhHHHHHHHhCCcceec
Q 028830           76 AIHKGE-NCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRTELC  116 (203)
Q Consensus        76 ~~H~~~-h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C  116 (203)
                      ..|++. |...+||+|+.|++.|. .+.|.+|..+|.+-.|.|
T Consensus       280 ~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C  322 (467)
T KOG3608|consen  280 TTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQC  322 (467)
T ss_pred             HHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceec
Confidence            444432 33445555555555554 555555555444433444

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.71  E-value=2.6e-18  Score=122.00  Aligned_cols=107  Identities=20%  Similarity=0.331  Sum_probs=93.5

Q ss_pred             CCcccccccccccccccHHHHHHcCC---CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHH
Q 028830           33 RNLERCKVCGDMVPRKYAEEHFLNTH---APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQE  107 (203)
Q Consensus        33 ~~~~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~  107 (203)
                      ...|.|.+|++.|....++..|++.|   +.|.|..||+.|.. -+|++|.++|+|.+||+|..|++.|. .-+|..|.+
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            45689999999999999999999999   58999999999988 58999999999999999999999999 999999998


Q ss_pred             H-hCC-----------cceecccchhhcc-hhHHHHHHHhhcCCC
Q 028830          108 V-CGN-----------RTELCHLCNRYIR-LRERYNHESRCTGVP  139 (203)
Q Consensus       108 ~-~~~-----------~~~~C~~C~~~f~-~~~l~~H~~~~~~~~  139 (203)
                      . ||.           +.|.|..||.+-. ...+..|++.+|...
T Consensus       195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence            7 763           6799999998554 468888998877654

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.68  E-value=3.2e-17  Score=125.28  Aligned_cols=125  Identities=18%  Similarity=0.419  Sum_probs=107.8

Q ss_pred             ccC--ccCCCcCc-cccHHHH-HhhcCCCccccccccccccccc-HHHHHHcCC----CCccCccChhhhhH-HHHHhhH
Q 028830           10 KIC--SHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKY-AEEHFLNTH----APVACSQCSETMER-EILAIHK   79 (203)
Q Consensus        10 y~C--~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~-~~~~~~~~h----~~~~C~~C~~~f~~-~~l~~H~   79 (203)
                      +.|  ..|-+.|. +.+|++| +.|++++...|+.||..|.++. +++|.++.-    .+|.|..|.|.|.. ..|..|+
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv  257 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHV  257 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHH
Confidence            455  67889998 9999999 9999999999999999999995 445544422    49999999999988 7899999


Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-h-CCcceecccchhhcc-hhHHHHHHHhhc
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-C-GNRTELCHLCNRYIR-LRERYNHESRCT  136 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~-~~~~~~C~~C~~~f~-~~~l~~H~~~~~  136 (203)
                      ..|.  .-|+|+.|+.... .++|.+|++. | ..+||+|+.|++.|. .+.|.+|...|.
T Consensus       258 ~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS  316 (467)
T KOG3608|consen  258 VRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS  316 (467)
T ss_pred             HHhh--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence            8875  6799999999999 9999999999 7 789999999999665 689999997654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.67  E-value=1.9e-16  Score=130.60  Aligned_cols=128  Identities=34%  Similarity=0.715  Sum_probs=106.8

Q ss_pred             ccCccCCCcCccccHHHHHhhcC--------------------CCcccccccccccccccHHHHHHcCCCCccCccChhh
Q 028830           10 KICSHCDRAIPSSNIDLHFAHCS--------------------RNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSET   69 (203)
Q Consensus        10 y~C~~C~~~f~~~~l~~H~~h~~--------------------~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~   69 (203)
                      -.|+.|.+.....+|..|..++.                    ++.+.|+.|++.|....+..|....|+++.|+ |++.
T Consensus       408 V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~  486 (567)
T PLN03086        408 VECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVV  486 (567)
T ss_pred             EECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccchHHHHHHHHhcCCCccCC-CCCC
Confidence            46999999988888888844442                    24568899999997545544444447899999 9987


Q ss_pred             hhHHHHHhhHhccCCCCcccCccCCCCCC-----------hhhHHHHHHHhCCcceecccchhhcchhHHHHHHHhhcCC
Q 028830           70 MEREILAIHKGENCPQRIVTCDFCEFPLP-----------AVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGV  138 (203)
Q Consensus        70 f~~~~l~~H~~~h~~~~~~~C~~C~~~f~-----------~~~l~~H~~~~~~~~~~C~~C~~~f~~~~l~~H~~~~~~~  138 (203)
                      +....|..|+.+|++++++.|++|++.|.           .+.|..|...+|.+++.|..||+.|....+..|+..+|..
T Consensus       487 ~~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlrdm~~H~~~~h~~  566 (567)
T PLN03086        487 LEKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLKEMDIHQIAVHQK  566 (567)
T ss_pred             cchhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeehhHHHHHHHhhcC
Confidence            76689999999999999999999999985           2479999999999999999999999999999999888764

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.57  E-value=5.9e-16  Score=127.95  Aligned_cols=99  Identities=17%  Similarity=0.356  Sum_probs=79.1

Q ss_pred             ccCccCCCcCc-cccHHHH-H-hh-cCCCcccccccccccccccHHHHHHcCCC----------------CccCccChhh
Q 028830           10 KICSHCDRAIP-SSNIDLH-F-AH-CSRNLERCKVCGDMVPRKYAEEHFLNTHA----------------PVACSQCSET   69 (203)
Q Consensus        10 y~C~~C~~~f~-~~~l~~H-~-~h-~~~~~~~C~~C~~~f~~~~~~~~~~~~h~----------------~~~C~~C~~~   69 (203)
                      ..|+.|++.+. ...|+.| + .| ..+..|.|..|..+|..+..|..|+.+|+                .|+|.+|+|.
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA  290 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA  290 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence            57999999998 8899999 5 33 34567899999999999988888888883                5778888888


Q ss_pred             hhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH
Q 028830           70 MER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        70 f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.. -+|+.|+++|.|||||.|+.|+|+|+ ..++..|+..
T Consensus       291 FKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  291 FKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             hhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            877 47888888888888888888888887 7777777654

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.55  E-value=2.1e-15  Score=107.29  Aligned_cols=108  Identities=18%  Similarity=0.368  Sum_probs=94.6

Q ss_pred             CCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC---CCccCccChhhhhH-HHHHhhH
Q 028830            6 DETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH---APVACSQCSETMER-EILAIHK   79 (203)
Q Consensus         6 ~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~C~~~f~~-~~l~~H~   79 (203)
                      +...|.|..|++.|. ..-|.+| .-|..-+.|.|..||+.|.....+..|.++|   +||+|..|++.|++ -.|..|.
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            456799999999999 9999999 8999999999999999999998888999999   69999999999998 4788887


Q ss_pred             hccC-----------CCCcccCccCCCCCC-hhhHHHHHHH-hCCcc
Q 028830           80 GENC-----------PQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRT  113 (203)
Q Consensus        80 ~~h~-----------~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~  113 (203)
                      ..-+           .++.|.|..||..-. ...+..|.+. |...+
T Consensus       194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            6533           458899999999988 8889999998 54433

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.53  E-value=2.9e-15  Score=123.91  Aligned_cols=73  Identities=27%  Similarity=0.482  Sum_probs=69.6

Q ss_pred             CccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHh-CCcceecccchhhcc-hhHHHHHH
Q 028830           60 PVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVC-GNRTELCHLCNRYIR-LRERYNHE  132 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~-~~~~~~C~~C~~~f~-~~~l~~H~  132 (203)
                      .|.|+.|+|.|.. +.|.+|.-.|+|++||+|.+|.|.|. +..|..|+|.| |||||.|+.|+|.|+ +.++..||
T Consensus       894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhh
Confidence            8999999999977 89999999999999999999999999 99999999995 999999999999999 56999998

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.24  E-value=1.6e-11  Score=101.81  Aligned_cols=100  Identities=18%  Similarity=0.404  Sum_probs=83.6

Q ss_pred             CCCcccCccCCCcCccccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC---CCccCccChhhhh----------
Q 028830            6 DETTKICSHCDRAIPSSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH---APVACSQCSETME----------   71 (203)
Q Consensus         6 ~~k~y~C~~C~~~f~~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~C~~~f~----------   71 (203)
                      .++.+.|+.|++.|....|..| +.+.  .++.|+ ||..+ .+..+..|+..|   +++.|.+|++.|.          
T Consensus       450 l~~H~~C~~Cgk~f~~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d  525 (567)
T PLN03086        450 AKNHVHCEKCGQAFQQGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRD  525 (567)
T ss_pred             cccCccCCCCCCccchHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhh
Confidence            4677899999999987789999 6653  799999 99766 456777777777   6999999999884          


Q ss_pred             -HHHHHhhHhccCCCCcccCccCCCCCChhhHHHHHHH-hC
Q 028830           72 -REILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEV-CG  110 (203)
Q Consensus        72 -~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~l~~H~~~-~~  110 (203)
                       .+.|..|+.. +|.+++.|..||+.|....+..|+.. |.
T Consensus       526 ~~s~Lt~HE~~-CG~rt~~C~~Cgk~Vrlrdm~~H~~~~h~  565 (567)
T PLN03086        526 RLRGMSEHESI-CGSRTAPCDSCGRSVMLKEMDIHQIAVHQ  565 (567)
T ss_pred             hhhhHHHHHHh-cCCcceEccccCCeeeehhHHHHHHHhhc
Confidence             1479999987 69999999999999997789999887 53

>PHA00733 hypothetical protein

Probab=99.20  E-value=1.4e-11  Score=84.17  Aligned_cols=62  Identities=18%  Similarity=0.415  Sum_probs=47.5

Q ss_pred             HHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHhCCcceecccchhhcc-hhHHHHHHHhhcCC
Q 028830           75 LAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRTELCHLCNRYIR-LRERYNHESRCTGV  138 (203)
Q Consensus        75 l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~  138 (203)
                      |..|+.. .+.++|.|+.|++.|. ...|..|++.+ +.+|.|+.|++.|. ...|..|+...|..
T Consensus        62 l~~~~~~-~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         62 LYKLLTS-KAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             HHhhccc-CCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence            4555443 3478899999999998 88888888865 45789999999888 46888898776653

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.93  E-value=1.9e-10  Score=90.51  Aligned_cols=131  Identities=15%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             cccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCC--------------------------
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP--------------------------   60 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~--------------------------   60 (203)
                      -|.|..|...|. ...|.+| -...-.-.|+|+.|++.|.-..+|..|++.|||                          
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            377888888887 7778887 333444468888888888888888888887731                          


Q ss_pred             ----------ccCccChhhhhH-HHHHhhHhccCCC--------------------------------------------
Q 028830           61 ----------VACSQCSETMER-EILAIHKGENCPQ--------------------------------------------   85 (203)
Q Consensus        61 ----------~~C~~C~~~f~~-~~l~~H~~~h~~~--------------------------------------------   85 (203)
                                |.|.+|++.|.+ ..|+.|+.+|...                                            
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~  426 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAG  426 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeec
Confidence                      678888888877 6777776654210                                            


Q ss_pred             --CcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcCCC
Q 028830           86 --RIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTGVP  139 (203)
Q Consensus        86 --~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~  139 (203)
                        ....|++|+..+. +..--.+.+. +.+.-|.|.+|--.|. +..|.+|+.++|..+
T Consensus       427 sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hpse  485 (500)
T KOG3993|consen  427 SAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPSE  485 (500)
T ss_pred             cccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChHH
Confidence              1123455554444 3222233333 3445688999998776 579999998887644

>PHA00733 hypothetical protein

Probab=98.85  E-value=2.3e-09  Score=73.28  Aligned_cols=105  Identities=12%  Similarity=0.115  Sum_probs=77.8

Q ss_pred             cCCCCcccCccCCCcCc--cccHHHH-HhhcCCCcccccccccccccccHHHHH------HcCC--CCccCccChhhhhH
Q 028830            4 TSDETTKICSHCDRAIP--SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHF------LNTH--APVACSQCSETMER   72 (203)
Q Consensus         4 h~~~k~y~C~~C~~~f~--~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~------~~~h--~~~~C~~C~~~f~~   72 (203)
                      ..|.+.|.-+.=|-.|-  ...|..+ ..-...+++.|.+|+..|....++.++      ...+  ++|.|..|++.|..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss   85 (128)
T PHA00733          6 ESGSKKYLSNHKGIFIHVTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSS   85 (128)
T ss_pred             ccchHhhcccCCCeEEecCHHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCC
Confidence            34566676444444443  4445554 333345789999999999988666554      1222  49999999999988


Q ss_pred             -HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hC
Q 028830           73 -EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CG  110 (203)
Q Consensus        73 -~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~  110 (203)
                       ..|..|+..+  +.+|.|+.|++.|. ...|..|+.. |+
T Consensus        86 ~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         86 SVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence             7899999876  46799999999999 9999999988 75

>PHA02768 hypothetical protein; Provisional

Probab=98.84  E-value=1.2e-09  Score=62.18  Aligned_cols=38  Identities=13%  Similarity=0.097  Sum_probs=28.6

Q ss_pred             cccCccCCCCCC-hhhHHHHHHHhCCcceecccchhhcch
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEVCGNRTELCHLCNRYIRL  125 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~C~~~f~~  125 (203)
                      .|+|+.||+.|+ .++|..|+++|. ++|+|..|++.|..
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~   43 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLR   43 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecc
Confidence            467888888887 777888888755 57788888877763

>PHA02768 hypothetical protein; Provisional

Probab=98.71  E-value=5.4e-09  Score=59.49  Aligned_cols=41  Identities=15%  Similarity=0.146  Sum_probs=32.0

Q ss_pred             cccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHH
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAE   51 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~   51 (203)
                      -|.|+.||+.|. .++|..| +.|+  ++|+|..|++.|.+.+.+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            378888888888 8888888 7777  578888888888766443

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.53  E-value=2e-08  Score=48.83  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=10.8

Q ss_pred             HHhhHhccCCCCcccCccCCCCC
Q 028830           75 LAIHKGENCPQRIVTCDFCEFPL   97 (203)
Q Consensus        75 l~~H~~~h~~~~~~~C~~C~~~f   97 (203)
                      |..|+++|++++||.|+.|++.|
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F   24 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSF   24 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEE
T ss_pred             HHHHhhhcCCCCCCCCCCCcCee
Confidence            34444444444444444444443

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.47  E-value=3.6e-07  Score=52.82  Aligned_cols=50  Identities=20%  Similarity=0.421  Sum_probs=38.8

Q ss_pred             cccCccCCCCCChhhHHHHHHH-h--CCcceecccchhhcchhHHHHHHHhhcC
Q 028830           87 IVTCDFCEFPLPAVDLAEHQEV-C--GNRTELCHLCNRYIRLRERYNHESRCTG  137 (203)
Q Consensus        87 ~~~C~~C~~~f~~~~l~~H~~~-~--~~~~~~C~~C~~~f~~~~l~~H~~~~~~  137 (203)
                      .|.|++|++.|....|..|... |  ..+.+.|++|...++ .+|..|+...|+
T Consensus         2 ~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~-~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVT-DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhh-hHHHHHHHHhcC
Confidence            5789999997667789999888 7  345789999987544 488899877663

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.47  E-value=6.4e-08  Score=47.04  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             cHHHH-HhhcCCCccccccccccccc
Q 028830           23 NIDLH-FAHCSRNLERCKVCGDMVPR   47 (203)
Q Consensus        23 ~l~~H-~~h~~~~~~~C~~C~~~f~~   47 (203)
                      +|.+| +.|++++||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47889 89999999999999998863

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.38  E-value=1.5e-07  Score=74.55  Aligned_cols=104  Identities=16%  Similarity=0.275  Sum_probs=51.0

Q ss_pred             ccccccccccccccHHHHHHc---CCCCccCccChhhhhH-HHHHhhHhccCCCCccc-Ccc-C-CCCCChhhH-HHHHH
Q 028830           36 ERCKVCGDMVPRKYAEEHFLN---THAPVACSQCSETMER-EILAIHKGENCPQRIVT-CDF-C-EFPLPAVDL-AEHQE  107 (203)
Q Consensus        36 ~~C~~C~~~f~~~~~~~~~~~---~h~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~-C~~-C-~~~f~~~~l-~~H~~  107 (203)
                      |.|..|...|.+...|..|+.   +|--|+|++|+|.|.= .+|..|.++|.....-- -.. = .+......+ +.=.+
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            566666666666655555532   1235666666666655 56666666553211000 000 0 000000000 00000


Q ss_pred             H---hCCcceecccchhhcch-hHHHHHHHhhcCCC
Q 028830          108 V---CGNRTELCHLCNRYIRL-RERYNHESRCTGVP  139 (203)
Q Consensus       108 ~---~~~~~~~C~~C~~~f~~-~~l~~H~~~~~~~~  139 (203)
                      .   ..+.-|.|..|++.|++ ..|..|+..|+...
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence            0   01235899999999985 68888977776543

>PHA00616 hypothetical protein

Probab=98.28  E-value=3e-07  Score=49.83  Aligned_cols=31  Identities=13%  Similarity=0.099  Sum_probs=16.8

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      ||+|+.||+.|. .+.|..|++. ||++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            355555555555 5555555555 455555554

>PHA00616 hypothetical protein

Probab=98.26  E-value=5.6e-07  Score=48.77  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             CccCccChhhhhH-HHHHhhHhccCCCCcccCcc
Q 028830           60 PVACSQCSETMER-EILAIHKGENCPQRIVTCDF   92 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~   92 (203)
                      +|+|..||+.|.. ++|..|++.|+|++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899999999998 89999999999999999875

>PHA00732 hypothetical protein

Probab=98.24  E-value=5.6e-07  Score=56.01  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=16.1

Q ss_pred             ccCccChhhhhH-HHHHhhHhc-cCCCCcccCccCCCCCC
Q 028830           61 VACSQCSETMER-EILAIHKGE-NCPQRIVTCDFCEFPLP   98 (203)
Q Consensus        61 ~~C~~C~~~f~~-~~l~~H~~~-h~~~~~~~C~~C~~~f~   98 (203)
                      |.|..|++.|.. +.|..|++. |.   ++.|+.|++.|.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~   38 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR   38 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC
Confidence            445555555544 445555442 32   234555555543

>PHA00732 hypothetical protein

Probab=98.07  E-value=1.9e-06  Score=53.60  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=21.7

Q ss_pred             cccCccCCCcCc-cccHHHH-H-hhcCCCcccccccccccc
Q 028830            9 TKICSHCDRAIP-SSNIDLH-F-AHCSRNLERCKVCGDMVP   46 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~-~h~~~~~~~C~~C~~~f~   46 (203)
                      ||.|+.|++.|. ..+|+.| + .|.   ++.|+.|++.|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~   38 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR   38 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC
Confidence            466777777776 6667766 4 243   245666666665

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.85  E-value=1.7e-05  Score=45.81  Aligned_cols=8  Identities=38%  Similarity=1.003  Sum_probs=3.5

Q ss_pred             ccCccCCC
Q 028830           88 VTCDFCEF   95 (203)
Q Consensus        88 ~~C~~C~~   95 (203)
                      +.|++|..
T Consensus        32 v~CPiC~~   39 (54)
T PF05605_consen   32 VVCPICSS   39 (54)
T ss_pred             ccCCCchh
Confidence            44444443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.61  E-value=2.3e-05  Score=36.66  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=10.4

Q ss_pred             eecccchhhcc-hhHHHHHHHh
Q 028830          114 ELCHLCNRYIR-LRERYNHESR  134 (203)
Q Consensus       114 ~~C~~C~~~f~-~~~l~~H~~~  134 (203)
                      |.|+.|++.|. ...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            34555555554 2455555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.48  E-value=7e-05  Score=34.98  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=19.6

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.|+.|++.|. ...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            68999999999 9999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.44  E-value=3.7e-05  Score=59.14  Aligned_cols=49  Identities=16%  Similarity=0.329  Sum_probs=41.1

Q ss_pred             CCcccCcc--CCCCCC-hhhHHHHHHH-hC-------------------Ccceecccchhhcc-hhHHHHHHH
Q 028830           85 QRIVTCDF--CEFPLP-AVDLAEHQEV-CG-------------------NRTELCHLCNRYIR-LRERYNHES  133 (203)
Q Consensus        85 ~~~~~C~~--C~~~f~-~~~l~~H~~~-~~-------------------~~~~~C~~C~~~f~-~~~l~~H~~  133 (203)
                      +|||+|++  |+|.+. ...|+-|+.. |.                   .|||+|+.|+|.+. ...|+.|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            48999998  999998 9999999876 51                   28999999999998 468888864

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.21  E-value=0.00017  Score=35.07  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=14.8

Q ss_pred             ceecccchhhcc-hhHHHHHHHhhc
Q 028830          113 TELCHLCNRYIR-LRERYNHESRCT  136 (203)
Q Consensus       113 ~~~C~~C~~~f~-~~~l~~H~~~~~  136 (203)
                      +|.|..|++.|. ...|..|++.++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            466666766666 356666665543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.20  E-value=0.00026  Score=33.10  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=9.8

Q ss_pred             eecccchhhcc-hhHHHHHHHhh
Q 028830          114 ELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus       114 ~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      |.|+.|++.|. ...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555554 24555555443

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.17  E-value=0.00022  Score=33.38  Aligned_cols=21  Identities=19%  Similarity=0.518  Sum_probs=15.0

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.|+.|++.|. ...|..|++.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            56888888887 8888888776

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.08  E-value=0.00043  Score=44.96  Aligned_cols=70  Identities=19%  Similarity=0.175  Sum_probs=16.0

Q ss_pred             cCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHhCCcceecccchhhcc-hhHHHHHHHhh
Q 028830           62 ACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRTELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        62 ~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      +|..|+..|.. ..|..|+...++...-    ....+. ...+..+.+..-...+.|..|++.|. ...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            35666666655 5566666443332111    111111 23333333332222577777877776 46777777654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.07  E-value=0.00022  Score=54.97  Aligned_cols=65  Identities=17%  Similarity=0.410  Sum_probs=39.9

Q ss_pred             CCCcccC--ccCCCcCc-cccHHHHH--hhcCCCccccc--ccccccccccHHHHHHcCCCCccCccChhhhhH-HHHHh
Q 028830            6 DETTKIC--SHCDRAIP-SSNIDLHF--AHCSRNLERCK--VCGDMVPRKYAEEHFLNTHAPVACSQCSETMER-EILAI   77 (203)
Q Consensus         6 ~~k~y~C--~~C~~~f~-~~~l~~H~--~h~~~~~~~C~--~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~-~~l~~   77 (203)
                      ++|||+|  ..|++.|. ...|+.|+  .|...+...-+  +--..|         ...-+||.|+.|+|.|.. ..|+-
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F---------~~~~KPYrCevC~KRYKNlNGLKY  416 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF---------SAKDKPYRCEVCDKRYKNLNGLKY  416 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc---------cccCCceeccccchhhccCcccee
Confidence            4699999  57999998 88999994  44433222111  111112         011168888888888877 56666


Q ss_pred             hH
Q 028830           78 HK   79 (203)
Q Consensus        78 H~   79 (203)
                      |.
T Consensus       417 Hr  418 (423)
T COG5189         417 HR  418 (423)
T ss_pred             cc
Confidence            64

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.89  E-value=0.00022  Score=34.65  Aligned_cols=19  Identities=21%  Similarity=0.497  Sum_probs=11.1

Q ss_pred             cccCccCCCcCc-cccHHHH
Q 028830            9 TKICSHCDRAIP-SSNIDLH   27 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H   27 (203)
                      ||.|..|++.|. ...|..|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H   20 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREH   20 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHH
T ss_pred             CCCCCccCCccCChhHHHHH
Confidence            455666666665 5555555

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.88  E-value=0.00072  Score=37.60  Aligned_cols=29  Identities=21%  Similarity=0.424  Sum_probs=14.0

Q ss_pred             CCcccCccCCCCCC-hhhHHHHHHH-hCCcc
Q 028830           85 QRIVTCDFCEFPLP-AVDLAEHQEV-CGNRT  113 (203)
Q Consensus        85 ~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~  113 (203)
                      +.|-.|++|+..+. ..+|++|+.+ |+.+|
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45566666666666 6666666665 55544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.51  E-value=0.0025  Score=30.08  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=9.2

Q ss_pred             cCccCCCCCC-hhhHHHHHH
Q 028830           89 TCDFCEFPLP-AVDLAEHQE  107 (203)
Q Consensus        89 ~C~~C~~~f~-~~~l~~H~~  107 (203)
                      .|..|++.|. ...|..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHH
Confidence            4444555554 444444444

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.47  E-value=0.0016  Score=42.26  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=18.4

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      .+.|..|++.|. ...|..|++.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCcCHHHHHHHHcC
Confidence            688999999998 8889999887

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=96.26  E-value=0.002  Score=37.80  Aligned_cols=49  Identities=31%  Similarity=0.657  Sum_probs=33.8

Q ss_pred             CCCCcccCcc--CCCCCChhhHHHHHHH-hCCcceeccc----chhhcchhHHHHH
Q 028830           83 CPQRIVTCDF--CEFPLPAVDLAEHQEV-CGNRTELCHL----CNRYIRLRERYNH  131 (203)
Q Consensus        83 ~~~~~~~C~~--C~~~f~~~~l~~H~~~-~~~~~~~C~~----C~~~f~~~~l~~H  131 (203)
                      +...+..|+.  |...+....|..|... +..++..|+.    |+..+....|..|
T Consensus         5 C~~~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    5 CPFRPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             STTSEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CCCCEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            5667788887  5455667788899886 7888888888    8888877777665

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.0087  Score=51.41  Aligned_cols=84  Identities=21%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             cccHHHHHhhcCCCcccccc----------cccccccccHHHHHHcCC------C-CccCccChhhhhH-HHHHhhHhcc
Q 028830           21 SSNIDLHFAHCSRNLERCKV----------CGDMVPRKYAEEHFLNTH------A-PVACSQCSETMER-EILAIHKGEN   82 (203)
Q Consensus        21 ~~~l~~H~~h~~~~~~~C~~----------C~~~f~~~~~~~~~~~~h------~-~~~C~~C~~~f~~-~~l~~H~~~h   82 (203)
                      ...|+.|+.+..+ .+.|..          +.+.+....++.|++..-      + --.|..|...|.. ..|..|++. 
T Consensus       127 ~~~Lk~H~~~~H~-~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~-  204 (669)
T KOG2231|consen  127 VENLKNHMRDQHK-LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRF-  204 (669)
T ss_pred             HHHHHHHHHHhhh-hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhcc-
Confidence            5678888322221 233333          445555556666665421      2 3578889888876 678888876 


Q ss_pred             CCCCcccCccCC------CCCC-hhhHHHHHHH-h
Q 028830           83 CPQRIVTCDFCE------FPLP-AVDLAEHQEV-C  109 (203)
Q Consensus        83 ~~~~~~~C~~C~------~~f~-~~~l~~H~~~-~  109 (203)
                         ..|.|.+|.      .-|. ...|..|.+. |
T Consensus       205 ---~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  205 ---DHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ---ceeheeecCcccccchhcccchHHHHHhhhcC
Confidence               467777773      3356 7889999887 6

>PRK04860 hypothetical protein; Provisional

Probab=96.08  E-value=0.0042  Score=44.13  Aligned_cols=36  Identities=19%  Similarity=0.443  Sum_probs=28.8

Q ss_pred             CcccCccCCCCCChhhHHHHHHH-hCCcceecccchhhcc
Q 028830           86 RIVTCDFCEFPLPAVDLAEHQEV-CGNRTELCHLCNRYIR  124 (203)
Q Consensus        86 ~~~~C~~C~~~f~~~~l~~H~~~-~~~~~~~C~~C~~~f~  124 (203)
                      -+|.|. |+.  ....+.+|.++ .++++|.|..|+..|.
T Consensus       118 ~~Y~C~-C~~--~~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        118 FPYRCK-CQE--HQLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEEcC-CCC--eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence            368897 886  45667899999 5888999999988775

>PRK04860 hypothetical protein; Provisional

Probab=95.98  E-value=0.0029  Score=44.93  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=31.6

Q ss_pred             CccCccChhhhhHHHHHhhHhccCCCCcccCccCCCCCC
Q 028830           60 PVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLP   98 (203)
Q Consensus        60 ~~~C~~C~~~f~~~~l~~H~~~h~~~~~~~C~~C~~~f~   98 (203)
                      +|.|. |+.  ....+..|.+++.++++|.|..|+..|.
T Consensus       119 ~Y~C~-C~~--~~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        119 PYRCK-CQE--HQLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEcC-CCC--eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence            69998 987  3367889999999999999999999886

>smart00355 ZnF_C2H2 zinc finger

Probab=95.96  E-value=0.004  Score=29.33  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=13.8

Q ss_pred             ccCccCCCcCc-cccHHHH-Hhh
Q 028830           10 KICSHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus        10 y~C~~C~~~f~-~~~l~~H-~~h   30 (203)
                      |.|+.|++.|. ...|..| +.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46777777776 6677777 444

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.83  E-value=0.0069  Score=28.35  Aligned_cols=23  Identities=17%  Similarity=0.184  Sum_probs=12.5

Q ss_pred             eecccchhhcchhHHHHHHHhhc
Q 028830          114 ELCHLCNRYIRLRERYNHESRCT  136 (203)
Q Consensus       114 ~~C~~C~~~f~~~~l~~H~~~~~  136 (203)
                      |+|+.|+.......|..|++.+|
T Consensus         1 y~C~~C~y~t~~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTSKSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EESHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHhhC
Confidence            56667765334446777766654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.79  E-value=0.0062  Score=28.97  Aligned_cols=19  Identities=26%  Similarity=0.529  Sum_probs=9.7

Q ss_pred             ecccchhhcchhHHHHHHH
Q 028830          115 LCHLCNRYIRLRERYNHES  133 (203)
Q Consensus       115 ~C~~C~~~f~~~~l~~H~~  133 (203)
                      .|+.||+.|....|..|+.
T Consensus         4 ~C~~CgR~F~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKFNPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEECHHHHHHHHH
Confidence            4555555555455555543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.71  E-value=0.0093  Score=28.35  Aligned_cols=21  Identities=24%  Similarity=0.597  Sum_probs=15.2

Q ss_pred             ccCccCCCCCChhhHHHHHHH
Q 028830           88 VTCDFCEFPLPAVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~~~~l~~H~~~  108 (203)
                      ..|+.||+.|..+.|..|+.+
T Consensus         3 ~~C~~CgR~F~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKFNPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEECHHHHHHHHHh
Confidence            467778877777777777654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.51  E-value=0.014  Score=32.54  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             CCcceecccchhhcch-hHHHHHHHhhcCC
Q 028830          110 GNRTELCHLCNRYIRL-RERYNHESRCTGV  138 (203)
Q Consensus       110 ~~~~~~C~~C~~~f~~-~~l~~H~~~~~~~  138 (203)
                      .+.|..|++|+..+++ .+|.+|+...|..
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            5779999999999984 6999999887764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.12  E-value=0.0071  Score=28.55  Aligned_cols=19  Identities=21%  Similarity=0.509  Sum_probs=9.1

Q ss_pred             ecccchhhcc-hhHHHHHHH
Q 028830          115 LCHLCNRYIR-LRERYNHES  133 (203)
Q Consensus       115 ~C~~C~~~f~-~~~l~~H~~  133 (203)
                      .|..|++.|. ...|..|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            4555555554 235555543

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.047  Score=47.11  Aligned_cols=71  Identities=21%  Similarity=0.366  Sum_probs=40.3

Q ss_pred             cccccccccccccHHHHHH-cCCCCccCccC----------hhhhhHHHHHhhHhccCC-CC----cccCccCCCCCC-h
Q 028830           37 RCKVCGDMVPRKYAEEHFL-NTHAPVACSQC----------SETMEREILAIHKGENCP-QR----IVTCDFCEFPLP-A   99 (203)
Q Consensus        37 ~C~~C~~~f~~~~~~~~~~-~~h~~~~C~~C----------~~~f~~~~l~~H~~~h~~-~~----~~~C~~C~~~f~-~   99 (203)
                      .|..| ..|.....|..|+ ..|+.+.|..|          .+.|....|..|+..... ++    .-.|..|...|. .
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~  195 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDD  195 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccH
Confidence            46667 5565554443333 56655554443          334445567777665432 11    235777777777 7


Q ss_pred             hhHHHHHHH
Q 028830          100 VDLAEHQEV  108 (203)
Q Consensus       100 ~~l~~H~~~  108 (203)
                      ..|.+|++.
T Consensus       196 ~el~rH~~~  204 (669)
T KOG2231|consen  196 DELYRHLRF  204 (669)
T ss_pred             HHHHHhhcc
Confidence            777777775

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.99  E-value=0.018  Score=26.84  Aligned_cols=21  Identities=19%  Similarity=0.547  Sum_probs=13.6

Q ss_pred             ccCccCCCCCChhhHHHHHHH
Q 028830           88 VTCDFCEFPLPAVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~~~~l~~H~~~  108 (203)
                      |+|+.|+.......|.+|++.
T Consensus         1 y~C~~C~y~t~~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTSKSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EESHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHh
Confidence            578888765555678888776

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.65  E-value=0.019  Score=26.99  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=18.7

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.|..|++.|. ...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            67999999999 9999999863

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.31  E-value=0.0084  Score=29.00  Aligned_cols=20  Identities=25%  Similarity=0.542  Sum_probs=11.0

Q ss_pred             ccCccCCCCCC-hhhHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQE  107 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~  107 (203)
                      |.|..|++.|. ...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            44555555555 555555543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.14  E-value=0.031  Score=42.04  Aligned_cols=49  Identities=18%  Similarity=0.448  Sum_probs=41.0

Q ss_pred             cccCccCCCcCccccHHHHHhhcCCCcccccccccccccccHHHHHHcC
Q 028830            9 TKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNT   57 (203)
Q Consensus         9 ~y~C~~C~~~f~~~~l~~H~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~   57 (203)
                      .|.|+.||....+..+.+|+..+...-|.|-.|+..|..-....|...+
T Consensus         3 ~FtCnvCgEsvKKp~vekH~srCrn~~fSCIDC~k~F~~~sYknH~kCI   51 (276)
T KOG2186|consen    3 FFTCNVCGESVKKPQVEKHMSRCRNAYFSCIDCGKTFERVSYKNHTKCI   51 (276)
T ss_pred             EEehhhhhhhccccchHHHHHhccCCeeEEeecccccccchhhhhhhhc
Confidence            4889999999988889999777777889999999999987666665443

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.67  E-value=0.037  Score=41.64  Aligned_cols=46  Identities=17%  Similarity=0.403  Sum_probs=24.5

Q ss_pred             ccCccChhhhhHHHHHhhHhccCCCCcccCccCCCCCChhhHHHHHH
Q 028830           61 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQE  107 (203)
Q Consensus        61 ~~C~~C~~~f~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~l~~H~~  107 (203)
                      |.|..||.......+..|+....+ .-|.|-.|++.|-..++..|..
T Consensus         4 FtCnvCgEsvKKp~vekH~srCrn-~~fSCIDC~k~F~~~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQVEKHMSRCRN-AYFSCIDCGKTFERVSYKNHTK   49 (276)
T ss_pred             EehhhhhhhccccchHHHHHhccC-CeeEEeecccccccchhhhhhh
Confidence            455566655555455555554333 4555666666655444555544

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=93.57  E-value=0.0094  Score=34.87  Aligned_cols=46  Identities=41%  Similarity=0.902  Sum_probs=24.0

Q ss_pred             CccCcc--ChhhhhHHHHHhhHhccCCCCcccCcc----CCCCCChhhHHHH
Q 028830           60 PVACSQ--CSETMEREILAIHKGENCPQRIVTCDF----CEFPLPAVDLAEH  105 (203)
Q Consensus        60 ~~~C~~--C~~~f~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~l~~H  105 (203)
                      +..|+.  |...+.+..|..|....+..++..|++    |+..+....|.+|
T Consensus         9 ~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    9 PVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             EEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             EeeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            445555  444455556666666666666777777    6666655555444

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.11  E-value=0.074  Score=30.18  Aligned_cols=28  Identities=21%  Similarity=0.468  Sum_probs=17.8

Q ss_pred             CCcceecccchhhcc-hhHHHHHHHhhcC
Q 028830          110 GNRTELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus       110 ~~~~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      ||--+.|+.||..|. +.++.+|.-..|+
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            555667777777776 4567777655444

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.73  E-value=0.087  Score=26.90  Aligned_cols=22  Identities=14%  Similarity=0.457  Sum_probs=15.7

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +|.|+.|++.|. ...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            466777777777 7777777654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=92.40  E-value=0.064  Score=49.35  Aligned_cols=26  Identities=15%  Similarity=0.112  Sum_probs=21.5

Q ss_pred             Ccceecccchhhcc-hhHHHHHHHhhc
Q 028830          111 NRTELCHLCNRYIR-LRERYNHESRCT  136 (203)
Q Consensus       111 ~~~~~C~~C~~~f~-~~~l~~H~~~~~  136 (203)
                      .++|.|..|...++ ..+|..|++..-
T Consensus       516 ~~p~~C~~C~~stttng~LsihlqS~~  542 (1406)
T KOG1146|consen  516 GKPYPCRACNYSTTTNGNLSIHLQSDL  542 (1406)
T ss_pred             CCcccceeeeeeeecchHHHHHHHHHh
Confidence            47899999999888 579999997653

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.05  E-value=0.17  Score=37.03  Aligned_cols=75  Identities=23%  Similarity=0.419  Sum_probs=39.5

Q ss_pred             ccCcc--ChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-h----------CCcceec--ccchhhc
Q 028830           61 VACSQ--CSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-C----------GNRTELC--HLCNRYI  123 (203)
Q Consensus        61 ~~C~~--C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~----------~~~~~~C--~~C~~~f  123 (203)
                      +.|..  |...|.. .+...|..+-++   -.|.+|.+.|. ..-|..|+.. |          |.-+|.|  ..|+..|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            44543  4444444 445555544222   25666666666 5555556543 3          3345666  4666666


Q ss_pred             c-hhHHHHHHHhhcCC
Q 028830          124 R-LRERYNHESRCTGV  138 (203)
Q Consensus       124 ~-~~~l~~H~~~~~~~  138 (203)
                      . ...-..|+...|.-
T Consensus       157 kT~r~RkdH~I~~Hk~  172 (253)
T KOG4173|consen  157 KTSRDRKDHMIRMHKY  172 (253)
T ss_pred             hhhhhhhhHHHHhccC
Confidence            5 35666666555443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.67  E-value=0.12  Score=40.82  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=40.3

Q ss_pred             ccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCC-------CC-hhhHHHHHHH-hCCcceecc--cc--hh--hcc
Q 028830           61 VACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFP-------LP-AVDLAEHQEV-CGNRTELCH--LC--NR--YIR  124 (203)
Q Consensus        61 ~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~-------f~-~~~l~~H~~~-~~~~~~~C~--~C--~~--~f~  124 (203)
                      -.|..|...|-. ..|..|.+.    +.-.|-+|++.       |. ..+|..|.+. |    |.|.  .|  |+  .|.
T Consensus       221 P~C~FC~~~FYdDDEL~~HcR~----~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~  292 (493)
T COG5236         221 PLCIFCKIYFYDDDELRRHCRL----RHEACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFP  292 (493)
T ss_pred             chhhhccceecChHHHHHHHHh----hhhhhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEec
Confidence            357777777766 567777664    44455555433       44 5666666665 4    4442  22  22  455


Q ss_pred             h-hHHHHHHHhhcCC
Q 028830          125 L-RERYNHESRCTGV  138 (203)
Q Consensus       125 ~-~~l~~H~~~~~~~  138 (203)
                      . ..|..|+..-|+.
T Consensus       293 ~~~el~~h~~~~h~~  307 (493)
T COG5236         293 YHTELLEHLTRFHKV  307 (493)
T ss_pred             cHHHHHHHHHHHhhc
Confidence            3 5888887665554

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=90.95  E-value=0.083  Score=29.99  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=18.9

Q ss_pred             cCCCCcccCccCCCcCc-cccHHHH
Q 028830            4 TSDETTKICSHCDRAIP-SSNIDLH   27 (203)
Q Consensus         4 h~~~k~y~C~~C~~~f~-~~~l~~H   27 (203)
                      -.||..+.|+.|+..|. ..++.+|
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RH   36 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRH   36 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHH
Confidence            34677788888888887 7788888

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=90.01  E-value=0.09  Score=39.35  Aligned_cols=30  Identities=23%  Similarity=0.641  Sum_probs=15.0

Q ss_pred             CccChhhhhH-HHHHhhHhccCCCCcccCccCCCC
Q 028830           63 CSQCSETMER-EILAIHKGENCPQRIVTCDFCEFP   96 (203)
Q Consensus        63 C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~   96 (203)
                      |-+|++.|.. +.|.+|++.    +.|+|.+|-+.
T Consensus        13 cwycnrefddekiliqhqka----khfkchichkk   43 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----KHFKCHICHKK   43 (341)
T ss_pred             eeecccccchhhhhhhhhhh----ccceeeeehhh
Confidence            4455555544 445555543    45555555443

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=89.52  E-value=0.22  Score=25.28  Aligned_cols=10  Identities=20%  Similarity=0.640  Sum_probs=5.6

Q ss_pred             ccCccCCCcC
Q 028830           10 KICSHCDRAI   19 (203)
Q Consensus        10 y~C~~C~~~f   19 (203)
                      |.|..||..+
T Consensus         2 ~~C~~CGy~y   11 (33)
T cd00350           2 YVCPVCGYIY   11 (33)
T ss_pred             EECCCCCCEE
Confidence            4566666553

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR00622 ssl1 transcription factor ssl1

Probab=89.37  E-value=0.49  Score=31.39  Aligned_cols=27  Identities=19%  Similarity=0.499  Sum_probs=17.0

Q ss_pred             ccCccCCCcCccccHHHHHhhcCCCcccccccccccccc
Q 028830           10 KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRK   48 (203)
Q Consensus        10 y~C~~C~~~f~~~~l~~H~~h~~~~~~~C~~C~~~f~~~   48 (203)
                      |.|+.|+-..-            +-|..|+.||......
T Consensus         2 Y~CPrC~skvC------------~LP~~CpiCgLtLVss   28 (112)
T TIGR00622         2 YFCPQCRAKVC------------ELPVECPICGLTLILS   28 (112)
T ss_pred             ccCCCCCCCcc------------CCCCcCCcCCCEEecc
Confidence            66777765421            2366777787776666

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=89.25  E-value=0.39  Score=31.77  Aligned_cols=15  Identities=27%  Similarity=0.634  Sum_probs=7.6

Q ss_pred             Ccccccccccccccc
Q 028830           34 NLERCKVCGDMVPRK   48 (203)
Q Consensus        34 ~~~~C~~C~~~f~~~   48 (203)
                      .|..|+.||..|...
T Consensus        25 ~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   25 DPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCccCCCCCCccCcc
Confidence            345555555555443

The function of members of this family is unknown.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=89.07  E-value=0.14  Score=47.34  Aligned_cols=94  Identities=13%  Similarity=0.176  Sum_probs=50.2

Q ss_pred             ccccccccccccccHHHHHHcCCCCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHhCCcc
Q 028830           36 ERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRT  113 (203)
Q Consensus        36 ~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~  113 (203)
                      +.|..|++.|.....+. +...-..|.|..|...|.. ..|..|.+           .|.+.+. .....-|...+....
T Consensus      1261 ~~c~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~-----------k~~~~~~~~~~~~~~~l~~~d~~ 1328 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLDVTHRYLCRQCKMAFDGEAPLTAHQR-----------KFCFAGRGSGGSMPPPLRVPDCT 1328 (1406)
T ss_pred             chhhhccccccCcccee-ecccchhHHHHHHHhhhcchhHHHHHHH-----------HHHhccCccccCCCCcccCcccc
Confidence            45666665555553332 2222235556666655555 45555542           1222333 333333333332233


Q ss_pred             eecccchhhcc-hhHHHHHHHhhcCCCCC
Q 028830          114 ELCHLCNRYIR-LRERYNHESRCTGVPEN  141 (203)
Q Consensus       114 ~~C~~C~~~f~-~~~l~~H~~~~~~~~~~  141 (203)
                      |.|..|...|+ +..|..||+..+.....
T Consensus      1329 ~~c~~c~~~~~~~~alqihm~~~~~~~kt 1357 (1406)
T KOG1146|consen 1329 YHCLACEVLLSGREALQIHMRSSAHRRKT 1357 (1406)
T ss_pred             ccchHHHhhcchhHHHHHHHHHhhhcccC
Confidence            44999999998 57999999877665543

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=88.44  E-value=0.57  Score=37.13  Aligned_cols=127  Identities=18%  Similarity=0.216  Sum_probs=77.6

Q ss_pred             cccCccCCCcCc--cccHHHH--Hhhc---C------------------CCcccccccccccccccHHHHHHcC--CC--
Q 028830            9 TKICSHCDRAIP--SSNIDLH--FAHC---S------------------RNLERCKVCGDMVPRKYAEEHFLNT--HA--   59 (203)
Q Consensus         9 ~y~C~~C~~~f~--~~~l~~H--~~h~---~------------------~~~~~C~~C~~~f~~~~~~~~~~~~--h~--   59 (203)
                      .-.|-.|...+.  ++..-.|  +.|-   |                  -..+.|-.|.+.|..+..+..||+.  |+  
T Consensus       144 slqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrri  223 (423)
T KOG2482|consen  144 SLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRRI  223 (423)
T ss_pred             eeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCccc
Confidence            356888888885  7777777  4442   1                  1236899999999999888888764  32  


Q ss_pred             -C--------ccC--ccChhhhhH--HHHH-----hhHhcc--------CCCCc--ccCccCCCCCC-hhhHHHHHHH-h
Q 028830           60 -P--------VAC--SQCSETMER--EILA-----IHKGEN--------CPQRI--VTCDFCEFPLP-AVDLAEHQEV-C  109 (203)
Q Consensus        60 -~--------~~C--~~C~~~f~~--~~l~-----~H~~~h--------~~~~~--~~C~~C~~~f~-~~~l~~H~~~-~  109 (203)
                       |        |.=  ..-|++..-  +.+.     .+....        .+..+  .+|-.|....- ...|..||++ |
T Consensus       224 nPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vH  303 (423)
T KOG2482|consen  224 NPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVH  303 (423)
T ss_pred             CCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHH
Confidence             1        110  112222211  1110     111100        12223  58999999887 8999999998 7


Q ss_pred             CC---------------------------cceecccchhhcch-hHHHHHHHhh
Q 028830          110 GN---------------------------RTELCHLCNRYIRL-RERYNHESRC  135 (203)
Q Consensus       110 ~~---------------------------~~~~C~~C~~~f~~-~~l~~H~~~~  135 (203)
                      .-                           +.-.|-.|...|-. ..|..||...
T Consensus       304 e~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  304 EFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             HhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            31                           22457788888874 6899998543

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=88.10  E-value=0.11  Score=38.83  Aligned_cols=34  Identities=12%  Similarity=0.278  Sum_probs=20.1

Q ss_pred             ccccccccccccHHHHHHcCCCCccCccChhhhhH
Q 028830           38 CKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMER   72 (203)
Q Consensus        38 C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~   72 (203)
                      |=+|.+.|.....|..|++. +-|+|.+|-+..-+
T Consensus        13 cwycnrefddekiliqhqka-khfkchichkkl~s   46 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA-KHFKCHICHKKLFS   46 (341)
T ss_pred             eeecccccchhhhhhhhhhh-ccceeeeehhhhcc
Confidence            66677777766555554432 45677777665433

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=88.10  E-value=0.32  Score=28.08  Aligned_cols=10  Identities=30%  Similarity=0.720  Sum_probs=6.1

Q ss_pred             CcccCccCCC
Q 028830           86 RIVTCDFCEF   95 (203)
Q Consensus        86 ~~~~C~~C~~   95 (203)
                      .+|.|+.||.
T Consensus        49 ~~Y~Cp~CGF   58 (61)
T COG2888          49 NPYRCPKCGF   58 (61)
T ss_pred             CceECCCcCc
Confidence            4666666664

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=87.59  E-value=0.3  Score=23.36  Aligned_cols=9  Identities=22%  Similarity=0.696  Sum_probs=4.2

Q ss_pred             ecccchhhc
Q 028830          115 LCHLCNRYI  123 (203)
Q Consensus       115 ~C~~C~~~f  123 (203)
                      .|+.||..|
T Consensus        16 ~Cp~CG~~F   24 (26)
T PF10571_consen   16 FCPHCGYDF   24 (26)
T ss_pred             cCCCCCCCC
Confidence            345554444

Several members are annotated as putative helicases.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=87.55  E-value=0.24  Score=25.94  Aligned_cols=33  Identities=18%  Similarity=0.403  Sum_probs=17.9

Q ss_pred             ccCccCCCcCc-cccHHHHHhhcCCCcccccccccccc
Q 028830           10 KICSHCDRAIP-SSNIDLHFAHCSRNLERCKVCGDMVP   46 (203)
Q Consensus        10 y~C~~C~~~f~-~~~l~~H~~h~~~~~~~C~~C~~~f~   46 (203)
                      +.|+.|+..|. .....    ........|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~----~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL----GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHc----CCCCCEEECCCCCCEEE
Confidence            56777777765 32211    11122466777776663

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=87.34  E-value=0.19  Score=41.16  Aligned_cols=51  Identities=22%  Similarity=0.398  Sum_probs=44.2

Q ss_pred             CcccCccCCCcCc-cccHHHH-H--hhcCC--Cccccc--ccccccccccHHHHHHcCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-F--AHCSR--NLERCK--VCGDMVPRKYAEEHFLNTH   58 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~--~h~~~--~~~~C~--~C~~~f~~~~~~~~~~~~h   58 (203)
                      .++.|..|...|. ...|..| .  .|.++  +++.|+  .|++.|.....+..|...|
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH  346 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccc
Confidence            5789999999998 9999999 7  79999  999999  7999999997776666666

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.03  E-value=0.24  Score=27.24  Aligned_cols=30  Identities=23%  Similarity=0.473  Sum_probs=17.9

Q ss_pred             cccCccCCCcCc-cccHHHHHhhcCCCccccccccccccc
Q 028830            9 TKICSHCDRAIP-SSNIDLHFAHCSRNLERCKVCGDMVPR   47 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H~~h~~~~~~~C~~C~~~f~~   47 (203)
                      .|.|+.|+..|. ....         ....|+.||..+..
T Consensus         3 ~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~~~   33 (46)
T PRK00398          3 EYKCARCGREVELDEYG---------TGVRCPYCGYRILF   33 (46)
T ss_pred             EEECCCCCCEEEECCCC---------CceECCCCCCeEEE
Confidence            577778877764 2211         14667777765543

>PHA00626 hypothetical protein

Probab=86.85  E-value=0.24  Score=28.20  Aligned_cols=16  Identities=13%  Similarity=0.154  Sum_probs=9.8

Q ss_pred             cceecccchhhcchhH
Q 028830          112 RTELCHLCNRYIRLRE  127 (203)
Q Consensus       112 ~~~~C~~C~~~f~~~~  127 (203)
                      ..|.|+.||..|+...
T Consensus        22 nrYkCkdCGY~ft~~~   37 (59)
T PHA00626         22 DDYVCCDCGYNDSKDA   37 (59)
T ss_pred             cceEcCCCCCeechhh
Confidence            3577777776666543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=86.79  E-value=0.28  Score=25.62  Aligned_cols=31  Identities=29%  Similarity=0.643  Sum_probs=16.9

Q ss_pred             ccCccCCCCCC-hhh-HHHHHHHhCCcceecccchhhc
Q 028830           88 VTCDFCEFPLP-AVD-LAEHQEVCGNRTELCHLCNRYI  123 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~-l~~H~~~~~~~~~~C~~C~~~f  123 (203)
                      ..|+.|+..|. ..+ |.     -+.+..+|+.|+..|
T Consensus         3 i~CP~C~~~f~v~~~~l~-----~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKLP-----AGGRKVRCPKCGHVF   35 (37)
T ss_pred             EECCCCCceEEcCHHHcc-----cCCcEEECCCCCcEe
Confidence            35677776665 332 21     234456677776655

>TIGR00622 ssl1 transcription factor ssl1

Probab=86.67  E-value=0.99  Score=29.97  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=16.5

Q ss_pred             CCCcccCccCCCcCc-cccHHHH
Q 028830            6 DETTKICSHCDRAIP-SSNIDLH   27 (203)
Q Consensus         6 ~~k~y~C~~C~~~f~-~~~l~~H   27 (203)
                      .+-|-.|+.|+...- ...|.+.
T Consensus        12 C~LP~~CpiCgLtLVss~HLARS   34 (112)
T TIGR00622        12 CELPVECPICGLTLILSTHLARS   34 (112)
T ss_pred             cCCCCcCCcCCCEEeccchHHHh
Confidence            356889999998875 6666654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.10  E-value=0.29  Score=36.63  Aligned_cols=14  Identities=14%  Similarity=0.591  Sum_probs=11.3

Q ss_pred             CCcccCccCCCcCc
Q 028830            7 ETTKICSHCDRAIP   20 (203)
Q Consensus         7 ~k~y~C~~C~~~f~   20 (203)
                      +|.+.||.|+..|.
T Consensus         3 ~k~~~CPvC~~~F~   16 (214)
T PF09986_consen    3 DKKITCPVCGKEFK   16 (214)
T ss_pred             CCceECCCCCCeee
Confidence            46788888888886

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.05  E-value=0.32  Score=35.65  Aligned_cols=76  Identities=22%  Similarity=0.321  Sum_probs=52.1

Q ss_pred             Ccccccc--cccccccccHHHHHHcCCCCccCccChhhhhHH-HHHhhHhc----------cCCCCcccCcc--CCCCCC
Q 028830           34 NLERCKV--CGDMVPRKYAEEHFLNTHAPVACSQCSETMERE-ILAIHKGE----------NCPQRIVTCDF--CEFPLP   98 (203)
Q Consensus        34 ~~~~C~~--C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~-~l~~H~~~----------h~~~~~~~C~~--C~~~f~   98 (203)
                      +.+.|++  |...|.......+|...--.-.|..|.+.|..+ -|..|+..          ..|.-.|.|-+  |+..|.
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFk  157 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFK  157 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhcccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhh
Confidence            3467876  666676654444443322245788999999773 55666543          34678899976  999998


Q ss_pred             -hhhHHHHHHH-h
Q 028830           99 -AVDLAEHQEV-C  109 (203)
Q Consensus        99 -~~~l~~H~~~-~  109 (203)
                       ...-+.|+-. |
T Consensus       158 T~r~RkdH~I~~H  170 (253)
T KOG4173|consen  158 TSRDRKDHMIRMH  170 (253)
T ss_pred             hhhhhhhHHHHhc
Confidence             8888999877 5

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=84.63  E-value=0.72  Score=23.58  Aligned_cols=10  Identities=20%  Similarity=0.617  Sum_probs=5.9

Q ss_pred             cccCccCCCc
Q 028830            9 TKICSHCDRA   18 (203)
Q Consensus         9 ~y~C~~C~~~   18 (203)
                      .|+|..||..
T Consensus         2 ~~~C~~CG~i   11 (34)
T cd00729           2 VWVCPVCGYI   11 (34)
T ss_pred             eEECCCCCCE
Confidence            3566666654

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=84.50  E-value=0.37  Score=34.03  Aligned_cols=13  Identities=23%  Similarity=0.613  Sum_probs=6.6

Q ss_pred             ccccccccccccc
Q 028830           36 ERCKVCGDMVPRK   48 (203)
Q Consensus        36 ~~C~~C~~~f~~~   48 (203)
                      +.|+.||..|.+.
T Consensus        29 ~~c~~c~~~f~~~   41 (154)
T PRK00464         29 RECLACGKRFTTF   41 (154)
T ss_pred             eeccccCCcceEe
Confidence            4555555555444

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=84.40  E-value=0.5  Score=24.50  Aligned_cols=32  Identities=19%  Similarity=0.394  Sum_probs=15.9

Q ss_pred             ccCccCCCCCC-hhhHHHHHHHhCCcceecccchhhc
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEVCGNRTELCHLCNRYI  123 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~C~~~f  123 (203)
                      ..|+.|+..|. ......    -..+..+|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~ip----~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKIP----PKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHHCC----CCCcEEECCCCCCEe
Confidence            35666666665 332110    223356666666554

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=83.80  E-value=2.2  Score=28.12  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=19.4

Q ss_pred             eec----ccchhhcc-hhHHHHHHHhhcC
Q 028830          114 ELC----HLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus       114 ~~C----~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      |.|    ..|+.... ...+.+|.+..|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            889    99988666 5799999987764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.68  E-value=0.88  Score=23.10  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=17.8

Q ss_pred             ceecccchhhcchhHHHHHHHhhcC
Q 028830          113 TELCHLCNRYIRLRERYNHESRCTG  137 (203)
Q Consensus       113 ~~~C~~C~~~f~~~~l~~H~~~~~~  137 (203)
                      .+.|+.|++.+...-+..|+..+.+
T Consensus         4 ~~~C~nC~R~v~a~RfA~HLekCmg   28 (33)
T PF08209_consen    4 YVECPNCGRPVAASRFAPHLEKCMG   28 (33)
T ss_dssp             EEE-TTTSSEEEGGGHHHHHHHHTC
T ss_pred             eEECCCCcCCcchhhhHHHHHHHHc
Confidence            4678888887777778888877654

The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=83.65  E-value=4  Score=32.60  Aligned_cols=70  Identities=21%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             cccccccccccccHHHHHHc-CC-CCccCccChh----hhhH-HHHHhhHhccCCCCcccCcc--CC--C--CCC-hhhH
Q 028830           37 RCKVCGDMVPRKYAEEHFLN-TH-APVACSQCSE----TMER-EILAIHKGENCPQRIVTCDF--CE--F--PLP-AVDL  102 (203)
Q Consensus        37 ~C~~C~~~f~~~~~~~~~~~-~h-~~~~C~~C~~----~f~~-~~l~~H~~~h~~~~~~~C~~--C~--~--~f~-~~~l  102 (203)
                      .|..|...|-....|..|.+ .| +-|.|+.-+.    -|.. .+|..|.+.    -.|.|.+  |-  +  .|. .-.|
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~----~hy~ct~qtc~~~k~~vf~~~~el  297 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRN----AHYCCTFQTCRVGKCYVFPYHTEL  297 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhc----CceEEEEEEEecCcEEEeccHHHH
Confidence            47777777766644444433 33 3444443332    2333 467777664    4566654  32  2  255 6667


Q ss_pred             HHHHHH-hC
Q 028830          103 AEHQEV-CG  110 (203)
Q Consensus       103 ~~H~~~-~~  110 (203)
                      ..|+.. |+
T Consensus       298 ~~h~~~~h~  306 (493)
T COG5236         298 LEHLTRFHK  306 (493)
T ss_pred             HHHHHHHhh
Confidence            777766 63

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=83.55  E-value=0.45  Score=26.79  Aligned_cols=11  Identities=18%  Similarity=0.600  Sum_probs=7.1

Q ss_pred             ccCccCCCcCc
Q 028830           10 KICSHCDRAIP   20 (203)
Q Consensus        10 y~C~~C~~~f~   20 (203)
                      |+|..|+..|.
T Consensus         6 y~C~~Cg~~fe   16 (52)
T TIGR02605         6 YRCTACGHRFE   16 (52)
T ss_pred             EEeCCCCCEeE
Confidence            66666666665

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=83.40  E-value=1.2  Score=30.20  Aligned_cols=29  Identities=14%  Similarity=0.175  Sum_probs=15.3

Q ss_pred             ccccccccccccccHHHHHHcCCCCccCccChhhhhH
Q 028830           36 ERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMER   72 (203)
Q Consensus        36 ~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~   72 (203)
                      ..|+.||..|-..+      +  .|..|++||..|.-
T Consensus        10 r~Cp~cg~kFYDLn------k--~p~vcP~cg~~~~~   38 (129)
T TIGR02300        10 RICPNTGSKFYDLN------R--RPAVSPYTGEQFPP   38 (129)
T ss_pred             ccCCCcCccccccC------C--CCccCCCcCCccCc
Confidence            34666666664321      1  36666666665543

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=83.36  E-value=1  Score=21.46  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=11.8

Q ss_pred             ecccchhhcchhHHHHHHHh
Q 028830          115 LCHLCNRYIRLRERYNHESR  134 (203)
Q Consensus       115 ~C~~C~~~f~~~~l~~H~~~  134 (203)
                      .||.|++.+....+..|+..
T Consensus         3 ~CPiC~~~v~~~~in~HLD~   22 (26)
T smart00734        3 QCPVCFREVPENLINSHLDS   22 (26)
T ss_pred             cCCCCcCcccHHHHHHHHHH
Confidence            46666666555566666543

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila

Probab=82.57  E-value=0.93  Score=33.43  Aligned_cols=53  Identities=23%  Similarity=0.387  Sum_probs=30.3

Q ss_pred             cccCcc----CCCCCChhhHHHHHHHhCCcceeccc----chhhcchhHHHHHHHhhcCCC
Q 028830           87 IVTCDF----CEFPLPAVDLAEHQEVCGNRTELCHL----CNRYIRLRERYNHESRCTGVP  139 (203)
Q Consensus        87 ~~~C~~----C~~~f~~~~l~~H~~~~~~~~~~C~~----C~~~f~~~~l~~H~~~~~~~~  139 (203)
                      .+.|..    |...+.......|.+.+.-+|+.|+.    |+..=....|..|....|...
T Consensus        14 ~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~   74 (198)
T PF03145_consen   14 KFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWN   74 (198)
T ss_dssp             -EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTS
T ss_pred             eecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCc
Confidence            455655    77777777778888888888888877    643223468888888777653

The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=82.11  E-value=0.57  Score=24.76  Aligned_cols=11  Identities=18%  Similarity=0.634  Sum_probs=7.1

Q ss_pred             ccCccCCCcCc
Q 028830           10 KICSHCDRAIP   20 (203)
Q Consensus        10 y~C~~C~~~f~   20 (203)
                      |+|+.|+..|.
T Consensus         6 y~C~~Cg~~fe   16 (41)
T smart00834        6 YRCEDCGHTFE   16 (41)
T ss_pred             EEcCCCCCEEE
Confidence            56666666664

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=81.63  E-value=1.4  Score=31.31  Aligned_cols=41  Identities=10%  Similarity=0.117  Sum_probs=28.4

Q ss_pred             HHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHhCCcceecccchhhc
Q 028830           75 LAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRTELCHLCNRYI  123 (203)
Q Consensus        75 l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~C~~~f  123 (203)
                      |..-+.......-|.|+.|+..|+ ...+.        .-|.|+.||...
T Consensus        97 lk~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~--------~~F~Cp~Cg~~L  138 (158)
T TIGR00373        97 LREKLEFETNNMFFICPNMCVRFTFNEAME--------LNFTCPRCGAML  138 (158)
T ss_pred             HHHHHhhccCCCeEECCCCCcEeeHHHHHH--------cCCcCCCCCCEe
Confidence            333334445557789999999998 66664        258999999743

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=81.51  E-value=1.9  Score=29.49  Aligned_cols=52  Identities=17%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             CCcccccccccccccccHHHHHHcCCCCccCccChhhhhH---HHHHhhHhccCCCCcccCccCCCCCC
Q 028830           33 RNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMER---EILAIHKGENCPQRIVTCDFCEFPLP   98 (203)
Q Consensus        33 ~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~---~~l~~H~~~h~~~~~~~C~~C~~~f~   98 (203)
                      .+.|+|++|..+......+       +|-+|  ||...-.   ..|+.|-..|     -+|+.|.-+|.
T Consensus        78 ~~lYeCnIC~etS~ee~FL-------KPneC--CgY~iCn~Cya~LWK~~~~y-----pvCPvCkTSFK  132 (140)
T PF05290_consen   78 PKLYECNICKETSAEERFL-------KPNEC--CGYSICNACYANLWKFCNLY-----PVCPVCKTSFK  132 (140)
T ss_pred             CCceeccCcccccchhhcC-------Ccccc--cchHHHHHHHHHHHHHcccC-----CCCCccccccc
Confidence            4667888887776554322       45555  5544433   3555554432     26777777775

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=81.40  E-value=0.95  Score=24.67  Aligned_cols=26  Identities=35%  Similarity=0.871  Sum_probs=15.7

Q ss_pred             ccCccCCCcCc-cccHHHHHhhcCCCccccccccccc
Q 028830           10 KICSHCDRAIP-SSNIDLHFAHCSRNLERCKVCGDMV   45 (203)
Q Consensus        10 y~C~~C~~~f~-~~~l~~H~~h~~~~~~~C~~C~~~f   45 (203)
                      |.|..|+..|. .          ...+..|+.||...
T Consensus         3 Y~C~~Cg~~~~~~----------~~~~irC~~CG~rI   29 (44)
T smart00659        3 YICGECGRENEIK----------SKDVVRCRECGYRI   29 (44)
T ss_pred             EECCCCCCEeecC----------CCCceECCCCCceE
Confidence            67777777665 2          12356677776554

present in RNA polymerase I, II and III

>smart00531 TFIIE Transcription initiation factor IIE

Probab=81.31  E-value=1.8  Score=30.29  Aligned_cols=45  Identities=11%  Similarity=0.102  Sum_probs=26.6

Q ss_pred             HhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHhCCcceecccchhhc
Q 028830           76 AIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRTELCHLCNRYI  123 (203)
Q Consensus        76 ~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~C~~~f  123 (203)
                      ..-........-|.|+.|+..|. ...+.. .  .....|.|+.||...
T Consensus        88 ~~~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~-~--d~~~~f~Cp~Cg~~l  133 (147)
T smart00531       88 EDKLEDETNNAYYKCPNCQSKYTFLEANQL-L--DMDGTFTCPRCGEEL  133 (147)
T ss_pred             HHHHhcccCCcEEECcCCCCEeeHHHHHHh-c--CCCCcEECCCCCCEE
Confidence            33333344556788999998887 433221 0  123348999998744

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=80.91  E-value=0.34  Score=39.58  Aligned_cols=57  Identities=18%  Similarity=0.314  Sum_probs=36.6

Q ss_pred             CccCccChhhhhH-HHHHhhHh--ccCCC--CcccCc--cCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           60 PVACSQCSETMER-EILAIHKG--ENCPQ--RIVTCD--FCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~--~h~~~--~~~~C~--~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      ++.|..|...|.. ..|..|..  .|.++  +++.|+  .|++.|. ...+..|... .+..++.+
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE  354 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence            4666667666666 56666666  56666  677777  5777776 6666666666 34444444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.90  E-value=0.24  Score=37.08  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=21.6

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH-h----------CCc-----ceecccchhhcc
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV-C----------GNR-----TELCHLCNRYIR  124 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~-~----------~~~-----~~~C~~C~~~f~  124 (203)
                      +.+.|++|++.|. ..-.....+. .          +..     ...||.||.++.
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~   59 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAF   59 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccc
Confidence            4567777777775 4333333322 1          112     257999998664

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=80.30  E-value=1.2  Score=25.77  Aligned_cols=10  Identities=40%  Similarity=0.810  Sum_probs=6.2

Q ss_pred             CcccCccCCC
Q 028830           86 RIVTCDFCEF   95 (203)
Q Consensus        86 ~~~~C~~C~~   95 (203)
                      .+|+|+.||.
T Consensus        47 ~~Y~CP~CGF   56 (59)
T PRK14890         47 NPYTCPKCGF   56 (59)
T ss_pred             CceECCCCCC
Confidence            4666666664

>smart00531 TFIIE Transcription initiation factor IIE

Probab=80.29  E-value=0.84  Score=32.00  Aligned_cols=36  Identities=17%  Similarity=0.455  Sum_probs=15.9

Q ss_pred             CcccccccccccccccHHHHHHcCCCCccCccChhhh
Q 028830           34 NLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETM   70 (203)
Q Consensus        34 ~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f   70 (203)
                      .-|.|+.|+..|.....+... ..-..|.|+.||...
T Consensus        98 ~~Y~Cp~C~~~y~~~ea~~~~-d~~~~f~Cp~Cg~~l  133 (147)
T smart00531       98 AYYKCPNCQSKYTFLEANQLL-DMDGTFTCPRCGEEL  133 (147)
T ss_pred             cEEECcCCCCEeeHHHHHHhc-CCCCcEECCCCCCEE
Confidence            345666666655543211110 001236666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
2d9k_A	75	Solution Structure Of The Zf-Traf Domain Of Fln29 G		2e-06

>pdb|2D9K|A Chain A, Solution Structure Of The Zf-Traf Domain Of Fln29 Gene Product Length = 75

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 78  HKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC 135
           H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +++   H   C
Sbjct: 8   HEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVC 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	5e-20
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	3e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	7e-04
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	2e-11
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-09
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-05
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	3e-04

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 79.3 bits (195), Expect = 5e-20
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 73  EILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHE 132
              + H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +++   H 
Sbjct: 3   SGSSGHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHP 62

Query: 133 SRC 135
             C
Sbjct: 63  EVC 65

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 12 CSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEH 53
          C HCD  +    +  H  +C    E C  CG  V  K  + H
Sbjct: 20 CQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTH 61

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 60  PVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTE 114
              C  C   +    L  H+ + C  R   C  C   +   DL  H EVCG    
Sbjct: 17  LAVCQHCDLELSILKLKEHE-DYCGARTELCGNCGRNVLVKDLKTHPEVCGREGS 70

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Length = 76

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 50  AEEHFLN-THAPVACS-QCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQE 107
           +  H    +   + C  +C   + R  L  H   +CP+R + C+FC           H+ 
Sbjct: 5   SSGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEG 64

Query: 108 VCGNRTELC 116
           +C   +   
Sbjct: 65  MCPQESSGP 73

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 38  CKVCGDMVPRKYAEEHFLN-THAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFP 96
            + C   +  ++ E+H  +   A + C QC    ++  + IH  ++CP+R V+CD C   
Sbjct: 87  NEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAAS 146

Query: 97  LPAVDLAEHQEVCGNRTELCHLC 119
           +   D   H + C    E  H  
Sbjct: 147 MAFEDKEIHDQNCPLALEHHHHH 169

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 12  CSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNT--HAPVACSQCSET 69
              C   +   +++ H AHC   L  C  C     + +   H L       V+C  C+ +
Sbjct: 87  NEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAAS 146

Query: 70  MEREILAIHKGENCPQRIVTCDFC 93
           M  E   IH  +NCP  +      
Sbjct: 147 MAFEDKEIHD-QNCPLALEHHHHH 169

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 43  DMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDL 102
            + P  +A+   L+         C   ME   L      +C   ++ C  C+ P     +
Sbjct: 67  QLFPDNFAKREILSLMVKCPNEGCLHKMELRHLE-DHQAHCEFALMDCPQCQRPFQKFHI 125

Query: 103 AEH-QEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPEN 141
             H  + C  R   C  C   +   ++  H+  C    E+
Sbjct: 126 NIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLALEH 165

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 66

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 81  ENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELC-HLCNRYIRLRE 127
            +  +R   C +C        +  HQ  C      C + C      RE
Sbjct: 4   GSSGKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVARE 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.94
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.84
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.83
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.8
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.74
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.71
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.7
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.69
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.67
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.67
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.67
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.65
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.64
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.58
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.57
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.56
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.55
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.54
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.5
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.48
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.48
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.48
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.47
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.47
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.47
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.47
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.46
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.45
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.45
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.44
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.44
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.44
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.44
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.44
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.41
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.41
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.41
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.4
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.38
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.37
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.37
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.37
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.36
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.33
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.33
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.32
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.31
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.29
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.28
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.26
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.26
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.25
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.25
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.24
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.24
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.24
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.23
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.23
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.21
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.21
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.19
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.19
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.17
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.17
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.16
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.15
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.14
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.13
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.11
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.11
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.11
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.1
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.1
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.09
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.08
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.08
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.08
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.06
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.05
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.03
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.02
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.01
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.01
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.01
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.0
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.99
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.92
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.91
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.9
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.88
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.83
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.81
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.78
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.71
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.71
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.7
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.69
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.66
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.61
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.6
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.59
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.56
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.54
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.53
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.52
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.49
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.47
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.46
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.44
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.34
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.33
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.33
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.3
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.26
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.21
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.18
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.17
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.12
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.12
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.1
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.1
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.09
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.08
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.08
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.07
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.04
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.03
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.28
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.01
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.01
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.26
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.0
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.98
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.97
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.96
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.96
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.96
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.94
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.88
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.88
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.86
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.85
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.07
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.04
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.82
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.82
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.02
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.0
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.78
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.74
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.73
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.67
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.43
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.33
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.22
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.06
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.04
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	96.73
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.71
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.17
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.9
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.71
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.94
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	94.56
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	93.98
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	92.83
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.91
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.48
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	88.63
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	88.6
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.25
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	84.71
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	84.39
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	83.81
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	83.29
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.3

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=4.1e-31  Score=193.28  Aligned_cols=133  Identities=19%  Similarity=0.432  Sum_probs=65.0

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC---CCccCccChhhhhH-HHHH
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH---APVACSQCSETMER-EILA   76 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~C~~~f~~-~~l~   76 (203)
                      +|.++++|.|+.|++.|. ...|..| ..|.++++|.|+.|++.|.....|..|++.|   ++|.|..|++.|.. ..|.
T Consensus        43 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  122 (190)
T 2i13_A           43 THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR  122 (190)
T ss_dssp             CC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHH
T ss_pred             HcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHH
Confidence            344444455555555544 4445555 4444444555555555554444444444443   34555555555544 4455


Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhh
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      .|+++|.++++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.|
T Consensus       123 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H  184 (190)
T 2i13_A          123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH  184 (190)
T ss_dssp             HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC
T ss_pred             HHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhc
Confidence            5555555555555555555555 5555555555 3555555555555554 24555555444

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=3.8e-30  Score=188.12  Aligned_cols=138  Identities=21%  Similarity=0.447  Sum_probs=109.3

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC---CCccCccChhhhhH-HH
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH---APVACSQCSETMER-EI   74 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~C~~~f~~-~~   74 (203)
                      +++|.++++|.|+.|++.|. ...|..| +.|.++++|.|+.|++.|.....|..|++.|   ++|.|..|++.|.. ..
T Consensus        13 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   92 (190)
T 2i13_A           13 AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRAN   92 (190)
T ss_dssp             ------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             hhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHH
Confidence            35788999999999999999 9999999 8999999999999999999998888888877   58999999999988 79


Q ss_pred             HHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcCC
Q 028830           75 LAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTGV  138 (203)
Q Consensus        75 l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~  138 (203)
                      |..|+..|.++++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.|++.
T Consensus        93 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  159 (190)
T 2i13_A           93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE  159 (190)
T ss_dssp             HHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999 9999999999 6999999999999998 57999999887654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.94  E-value=1.7e-27  Score=173.96  Aligned_cols=134  Identities=17%  Similarity=0.247  Sum_probs=109.2

Q ss_pred             cCCCCcccC--ccCCCcCc-cccHHHH-HhhcCCCcccc--cccccccccccHHHHHHcCC---CCccCc--cChhhhhH
Q 028830            4 TSDETTKIC--SHCDRAIP-SSNIDLH-FAHCSRNLERC--KVCGDMVPRKYAEEHFLNTH---APVACS--QCSETMER   72 (203)
Q Consensus         4 h~~~k~y~C--~~C~~~f~-~~~l~~H-~~h~~~~~~~C--~~C~~~f~~~~~~~~~~~~h---~~~~C~--~C~~~f~~   72 (203)
                      ..++++|.|  +.|++.|. ...|..| +.|.++++|.|  +.|++.|.....|..|++.|   ++|.|.  .|++.|..
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   86 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT   86 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESC
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCC
Confidence            456788888  68999988 8888889 78888888988  78999998888888888887   488888  79988877


Q ss_pred             -HHHHhhH-hcc-CCCCcccC--ccCCCCCC-hhhHHHHHHH-hCCcceeccc--chhhcc-hhHHHHHHHhhcC
Q 028830           73 -EILAIHK-GEN-CPQRIVTC--DFCEFPLP-AVDLAEHQEV-CGNRTELCHL--CNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        73 -~~l~~H~-~~h-~~~~~~~C--~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~--C~~~f~-~~~l~~H~~~~~~  137 (203)
                       ..|..|+ ..| .++++|.|  +.|++.|. ...|..|+++ +++++|.|+.  |++.|. ...|..|++.|.+
T Consensus        87 ~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A           87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             HHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             HHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence             7888888 666 46788888  78999988 8889999888 5888899977  998888 4688888877654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=2.4e-26  Score=167.84  Aligned_cols=134  Identities=17%  Similarity=0.378  Sum_probs=121.6

Q ss_pred             cccCCCCcccC--ccCCCcCc-cccHHHH-HhhcCCCccccc--ccccccccccHHHHHH-cCC----CCccC--ccChh
Q 028830            2 AMTSDETTKIC--SHCDRAIP-SSNIDLH-FAHCSRNLERCK--VCGDMVPRKYAEEHFL-NTH----APVAC--SQCSE   68 (203)
Q Consensus         2 ~~h~~~k~y~C--~~C~~~f~-~~~l~~H-~~h~~~~~~~C~--~C~~~f~~~~~~~~~~-~~h----~~~~C--~~C~~   68 (203)
                      ++|.++++|.|  +.|++.|. ...|..| +.|.++++|.|+  .|++.|.....|..|+ +.|    ++|.|  ..|++
T Consensus        35 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k  114 (190)
T 1tf6_A           35 CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGK  114 (190)
T ss_dssp             HHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCE
T ss_pred             HhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCcc
Confidence            57889999999  89999999 9999999 899999999999  8999999997777777 777    38999  89999


Q ss_pred             hhhH-HHHHhhHhccCCCCcccCcc--CCCCCC-hhhHHHHHHHhCCcceeccc---chhhcc-hhHHHHHHHhhcC
Q 028830           69 TMER-EILAIHKGENCPQRIVTCDF--CEFPLP-AVDLAEHQEVCGNRTELCHL---CNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        69 ~f~~-~~l~~H~~~h~~~~~~~C~~--C~~~f~-~~~l~~H~~~~~~~~~~C~~---C~~~f~-~~~l~~H~~~~~~  137 (203)
                      .|.. ..|..|+++|.++++|.|+.  |++.|. .+.|..|+++|..  |.|+.   |++.|. ...|..|++.+++
T Consensus       115 ~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~--~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          115 AFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             ECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS--CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             ccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC--CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            9988 79999999999999999988  999999 9999999999533  99999   999998 5799999988765

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=1.5e-26  Score=163.54  Aligned_cols=131  Identities=21%  Similarity=0.362  Sum_probs=117.2

Q ss_pred             CCcccCccCCCcCc-cccHHHH-H---hhcCCCccccccc-----ccccccccHHHHHHcCC---CCccCcc--Chhhhh
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-F---AHCSRNLERCKVC-----GDMVPRKYAEEHFLNTH---APVACSQ--CSETME   71 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~---~h~~~~~~~C~~C-----~~~f~~~~~~~~~~~~h---~~~~C~~--C~~~f~   71 (203)
                      |.+|.|+.|++.|. ...|..| .   .|.++++|.|+.|     ++.|.....|..|++.|   ++|.|..  |++.|.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   80 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYS   80 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCS
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCccc
Confidence            56899999999999 9999999 5   6888899998753     48999998888888887   5999985  999998


Q ss_pred             H-HHHHhhHhccCCCCcccCcc--CCCCCC-hhhHHHHH-HHh-CCcceeccc--chhhcc-hhHHHHHHHhhcC
Q 028830           72 R-EILAIHKGENCPQRIVTCDF--CEFPLP-AVDLAEHQ-EVC-GNRTELCHL--CNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        72 ~-~~l~~H~~~h~~~~~~~C~~--C~~~f~-~~~l~~H~-~~~-~~~~~~C~~--C~~~f~-~~~l~~H~~~~~~  137 (203)
                      . ..|..|+++|.++++|.|+.  |++.|. .+.|..|+ ++| ++++|.|+.  |++.|. ...|..|++.+++
T Consensus        81 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           81 RLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            8 79999999999999999998  999999 99999999 555 889999988  999998 5799999988764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=4.9e-24  Score=144.94  Aligned_cols=114  Identities=18%  Similarity=0.333  Sum_probs=90.1

Q ss_pred             CCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHhcc
Q 028830            5 SDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEN   82 (203)
Q Consensus         5 ~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~~h   82 (203)
                      +++++|.|+.|++.|. ...|..| +.|.++++|.|+.|++.|.....|..|+..|                     ..+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~---------------------~~~   61 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN---------------------CMN   61 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHC---------------------CCC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhh---------------------hcC
Confidence            5788999999999998 9999999 8899888899998888888876655554311                     024


Q ss_pred             CCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcCCC
Q 028830           83 CPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTGVP  139 (203)
Q Consensus        83 ~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~  139 (203)
                      .++++|.|++|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++..|.++
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            5677888888888888 8888888888 5888888888888887 468888887666543

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=1.5e-24  Score=149.38  Aligned_cols=99  Identities=16%  Similarity=0.250  Sum_probs=71.2

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhH
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHK   79 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~   79 (203)
                      ++|.|+++|.|++|++.|. ...|..| +.|+++++|.|++|++.|....                        .|..|+
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~------------------------~L~~H~   70 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAE------------------------YRTKHE   70 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHH------------------------HHHHHH
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeeccccc------------------------chhhhc
Confidence            3556666666666666666 6666666 5666666666666665555543                        456666


Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-hCC------cceecccchhhcc
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGN------RTELCHLCNRYIR  124 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~------~~~~C~~C~~~f~  124 (203)
                      ++|+++++|.|++|++.|. .+.|..|+++ |++      ++|+|..|++.|.
T Consensus        71 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           71 IHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQI  123 (133)
T ss_dssp             HHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCC
T ss_pred             cccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhh
Confidence            7778888999999999998 8889999888 665      4588999988775

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=4.1e-23  Score=140.34  Aligned_cols=80  Identities=21%  Similarity=0.349  Sum_probs=70.0

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH----hCCcceecccchhhcc-hhHHHHH
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV----CGNRTELCHLCNRYIR-LRERYNH  131 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~----~~~~~~~C~~C~~~f~-~~~l~~H  131 (203)
                      ++|.|..|++.|.. ..|..|+++|.++++|.|+.|++.|. ...|..|++.    .++++|.|+.|++.|. ...|..|
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   85 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH   85 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHH
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHH
Confidence            46788888888866 67888999999999999999999999 9999999986    3788999999999998 5799999


Q ss_pred             HHhhcCC
Q 028830          132 ESRCTGV  138 (203)
Q Consensus       132 ~~~~~~~  138 (203)
                      ++.+++.
T Consensus        86 ~~~h~~~   92 (124)
T 2dlq_A           86 MVSHTGE   92 (124)
T ss_dssp             HHHHSSS
T ss_pred             HHHcCCC
Confidence            9887654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=1.1e-23  Score=142.21  Aligned_cols=107  Identities=19%  Similarity=0.389  Sum_probs=83.0

Q ss_pred             CCCCcccCcc--CCCcCc-cccHHHH-HhhcCCCccccc--ccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhh
Q 028830            5 SDETTKICSH--CDRAIP-SSNIDLH-FAHCSRNLERCK--VCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIH   78 (203)
Q Consensus         5 ~~~k~y~C~~--C~~~f~-~~~l~~H-~~h~~~~~~~C~--~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H   78 (203)
                      +++++|.|+.  |++.|. ...|..| +.|.++++|.|+  .|++.|.....                        |..|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~------------------------l~~H   57 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQ------------------------LKRH   57 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHH------------------------HHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHH------------------------HHHH
Confidence            5778888876  888888 8888888 788888777777  57766665544                        4455


Q ss_pred             HhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec--ccchhhcc-hhHHHHHHHhh
Q 028830           79 KGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC--HLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        79 ~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C--~~C~~~f~-~~~l~~H~~~~  135 (203)
                      +++|.++++|.|+.|++.|. ...|..|+++ +++++|.|  +.|++.|. ...|..|++.|
T Consensus        58 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           58 QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            55666778888888888888 8888888888 58888888  78888887 46888888653

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=1.5e-24  Score=149.48  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=70.0

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHh
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESR  134 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~  134 (203)
                      ++|.|.+|++.|.. +.|..|+++|.++++|.|++|++.|. .+.|..|+++ .+++||.|+.|++.|. ...|..|++.
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~  100 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS  100 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHH
Confidence            35666666666655 56778888899999999999999999 9999999999 5999999999999998 5799999999


Q ss_pred             hcCCC
Q 028830          135 CTGVP  139 (203)
Q Consensus       135 ~~~~~  139 (203)
                      +|++.
T Consensus       101 hh~~~  105 (133)
T 2lt7_A          101 VHSQD  105 (133)
T ss_dssp             HTCCC
T ss_pred             hcCCC
Confidence            88764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=2.7e-23  Score=146.79  Aligned_cols=114  Identities=23%  Similarity=0.461  Sum_probs=83.7

Q ss_pred             cCCCCcccCccCCCcCc-cccHHHH-Hh-hcCCCc--------ccccccccccccccHHHHHHcCC---CCccCcc--Ch
Q 028830            4 TSDETTKICSHCDRAIP-SSNIDLH-FA-HCSRNL--------ERCKVCGDMVPRKYAEEHFLNTH---APVACSQ--CS   67 (203)
Q Consensus         4 h~~~k~y~C~~C~~~f~-~~~l~~H-~~-h~~~~~--------~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~--C~   67 (203)
                      +..+.+|.|..|++.|. ...|..| +. |.++.+        |.|+.|++.|.....|..|++.|   ++|.|..  |+
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            45667888999999998 8889999 54 776654        67777777777776666666666   4677776  77


Q ss_pred             hhhhH-HHHHhhHhccCCCCcccCcc--CCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           68 ETMER-EILAIHKGENCPQRIVTCDF--CEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        68 ~~f~~-~~l~~H~~~h~~~~~~~C~~--C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      +.|.. ..|..|+++|.++++|.|++  |++.|. ...|..|+++ +++++|.|.
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            77766 57777777777777777775  777777 7777777777 477777764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=7.8e-23  Score=138.04  Aligned_cols=81  Identities=23%  Similarity=0.444  Sum_probs=70.0

Q ss_pred             CCccCcc--ChhhhhH-HHHHhhHhccCCCCcccCc--cCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHH
Q 028830           59 APVACSQ--CSETMER-EILAIHKGENCPQRIVTCD--FCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYN  130 (203)
Q Consensus        59 ~~~~C~~--C~~~f~~-~~l~~H~~~h~~~~~~~C~--~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~  130 (203)
                      ++|.|..  |++.|.. ..|..|+++|.++++|.|+  .|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   84 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT   84 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHH
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHH
Confidence            4677765  7777766 6788888888899999999  7999999 9999999999 6999999999999998 579999


Q ss_pred             HHHhhcCCC
Q 028830          131 HESRCTGVP  139 (203)
Q Consensus       131 H~~~~~~~~  139 (203)
                      |++.+++..
T Consensus        85 H~~~h~~~~   93 (119)
T 2jp9_A           85 HTRTHTGEK   93 (119)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHhcCCC
Confidence            998877643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=7.1e-23  Score=139.34  Aligned_cols=106  Identities=21%  Similarity=0.426  Sum_probs=64.4

Q ss_pred             CCcccCc--cCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHhcc
Q 028830            7 ETTKICS--HCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEN   82 (203)
Q Consensus         7 ~k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~~h   82 (203)
                      +++|.|+  .|++.|. ...|..| ..| ++++|.|+.|++.|.....                        |..|+.+|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~------------------------l~~H~~~h   57 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSK------------------------LKRHQLVH   57 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHH------------------------HHHHGGGT
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHH------------------------HHHHHHHc
Confidence            4667776  6777776 7777777 566 5566666666666655544                        44455555


Q ss_pred             CCCCcccCcc--CCCCCC-hhhHHHHHHH-hCCcceecc--cchhhcc-hhHHHHHHHhhcC
Q 028830           83 CPQRIVTCDF--CEFPLP-AVDLAEHQEV-CGNRTELCH--LCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        83 ~~~~~~~C~~--C~~~f~-~~~l~~H~~~-~~~~~~~C~--~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      .++++|.|+.  |++.|. ...|..|+++ +++++|.|+  .|++.|. ...|..|++.|++
T Consensus        58 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             SCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            5666666654  666666 6666666666 466666663  3666665 3566666665543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.84  E-value=6.8e-22  Score=134.44  Aligned_cols=80  Identities=21%  Similarity=0.394  Sum_probs=69.9

Q ss_pred             CCccCc--cChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc--chhhcc-hhHHHH
Q 028830           59 APVACS--QCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL--CNRYIR-LRERYN  130 (203)
Q Consensus        59 ~~~~C~--~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~--C~~~f~-~~~l~~  130 (203)
                      ++|.|+  .|++.|.. ..|..|+.+| ++++|.|+.|++.|. ...|..|+++ +++++|.|+.  |++.|. ...|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~   82 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT   82 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHH
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHH
Confidence            467887  78888877 6888999888 889999999999999 9999999999 6999999985  999998 579999


Q ss_pred             HHHhhcCCC
Q 028830          131 HESRCTGVP  139 (203)
Q Consensus       131 H~~~~~~~~  139 (203)
                      |++.+++..
T Consensus        83 H~~~h~~~~   91 (124)
T 1ubd_C           83 HVRIHTGDR   91 (124)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHhCCCC
Confidence            998887653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=2.3e-21  Score=136.79  Aligned_cols=108  Identities=19%  Similarity=0.396  Sum_probs=98.3

Q ss_pred             ccCCCCcccCccC-----CCcCc-cccHHHH-HhhcCCCcccccc--cccccccccHHHHHHcCC---CCccCcc--Chh
Q 028830            3 MTSDETTKICSHC-----DRAIP-SSNIDLH-FAHCSRNLERCKV--CGDMVPRKYAEEHFLNTH---APVACSQ--CSE   68 (203)
Q Consensus         3 ~h~~~k~y~C~~C-----~~~f~-~~~l~~H-~~h~~~~~~~C~~--C~~~f~~~~~~~~~~~~h---~~~~C~~--C~~   68 (203)
                      +|.++++|.|+.|     ++.|. ...|..| +.|.++++|.|+.  |++.|.....|..|++.|   ++|.|..  |++
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  107 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSK  107 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCC
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCC
Confidence            6889999999753     48998 9999999 8999999999985  999999998888888888   5899998  999


Q ss_pred             hhhH-HHHHhhH-hccCCCCcccCcc--CCCCCC-hhhHHHHHHH-hC
Q 028830           69 TMER-EILAIHK-GENCPQRIVTCDF--CEFPLP-AVDLAEHQEV-CG  110 (203)
Q Consensus        69 ~f~~-~~l~~H~-~~h~~~~~~~C~~--C~~~f~-~~~l~~H~~~-~~  110 (203)
                      .|.. +.|..|+ .+|.++++|.|+.  |++.|. .+.|..|+++ ||
T Consensus       108 ~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          108 AFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             EESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9988 7999998 8999999999998  999999 9999999998 54

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.80  E-value=1.5e-20  Score=132.67  Aligned_cols=108  Identities=17%  Similarity=0.278  Sum_probs=96.1

Q ss_pred             cCCCcccccccccccccccHHHHHHcC-CC---C--------ccCccChhhhhH-HHHHhhHhccCCCCcccCcc--CCC
Q 028830           31 CSRNLERCKVCGDMVPRKYAEEHFLNT-HA---P--------VACSQCSETMER-EILAIHKGENCPQRIVTCDF--CEF   95 (203)
Q Consensus        31 ~~~~~~~C~~C~~~f~~~~~~~~~~~~-h~---~--------~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~--C~~   95 (203)
                      ....+|.|..|++.|.....|..|++. |.   +        |.|..|++.|.. ..|..|+++|.++++|.|..  |++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  100 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK  100 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCC
Confidence            356789999999999999888777776 62   2        899999999988 79999999999999999998  999


Q ss_pred             CCC-hhhHHHHHHH-hCCcceeccc--chhhcc-hhHHHHHHHhhcCC
Q 028830           96 PLP-AVDLAEHQEV-CGNRTELCHL--CNRYIR-LRERYNHESRCTGV  138 (203)
Q Consensus        96 ~f~-~~~l~~H~~~-~~~~~~~C~~--C~~~f~-~~~l~~H~~~~~~~  138 (203)
                      .|. ...|..|+++ +++++|.|+.  |++.|. ...|..|++.|+++
T Consensus       101 ~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  148 (155)
T 2rpc_A          101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD  148 (155)
T ss_dssp             EESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred             ccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            999 9999999999 6999999997  999998 57999999876654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=9.1e-19  Score=113.54  Aligned_cols=82  Identities=21%  Similarity=0.420  Sum_probs=69.1

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHh
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESR  134 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~  134 (203)
                      ++|.|..|++.|.. ..|..|++.|.++++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   86 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS   86 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTT
T ss_pred             cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            46777777777766 67888888888899999999999998 9999999999 5889999999999998 5799999988


Q ss_pred             hcCCCC
Q 028830          135 CTGVPE  140 (203)
Q Consensus       135 ~~~~~~  140 (203)
                      ++++..
T Consensus        87 h~~~~~   92 (96)
T 2dmd_A           87 HTGDSG   92 (96)
T ss_dssp             CCSCCC
T ss_pred             hcCCCC
Confidence            766543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.75  E-value=1.1e-18  Score=115.18  Aligned_cols=88  Identities=20%  Similarity=0.361  Sum_probs=64.0

Q ss_pred             CCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHhcc
Q 028830            5 SDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEN   82 (203)
Q Consensus         5 ~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~~h   82 (203)
                      .++++|.|+.|++.|. ...|..| +.|.++++|.|++|++.|....                        .|..|+++|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~------------------------~l~~H~~~h   68 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD------------------------HLRDHRYIH   68 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHH------------------------HHHHHGGGS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHH------------------------HHHHHHHHh
Confidence            4566777888888777 7777777 6777777777766666665554                        455566667


Q ss_pred             CCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           83 CPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        83 ~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      .++++|.|.+|++.|. ...|..|+++ +++++|.+
T Consensus        69 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            7778888888888887 8888888888 47777754

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.7e-19  Score=118.53  Aligned_cols=55  Identities=24%  Similarity=0.388  Sum_probs=29.5

Q ss_pred             ccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHH-Hh-CCcceec
Q 028830           61 VACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQE-VC-GNRTELC  116 (203)
Q Consensus        61 ~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~-~~-~~~~~~C  116 (203)
                      |.|..|++.|.. ..|..|+. |.++++|.|++|++.|. ...|..|++ +| ++++|.|
T Consensus        43 ~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~  101 (107)
T 1wjp_A           43 AVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPT  101 (107)
T ss_dssp             BCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCC
T ss_pred             ccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            333334444433 34445553 55666666666666666 666666665 33 5555554

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=3.9e-19  Score=117.75  Aligned_cols=88  Identities=13%  Similarity=0.211  Sum_probs=79.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC---CCccCccChhhhhH-HH
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH---APVACSQCSETMER-EI   74 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~C~~~f~~-~~   74 (203)
                      +++|+++++|.|++|++.|. ...|..| +.|  .++|.|++|++.|.....|..|+. |   ++|.|..|++.|.. ..
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHH
Confidence            57899999999999999999 9999999 788  469999999999999988878875 7   48999999999988 79


Q ss_pred             HHhhHh-ccCCCCcccCc
Q 028830           75 LAIHKG-ENCPQRIVTCD   91 (203)
Q Consensus        75 l~~H~~-~h~~~~~~~C~   91 (203)
                      |..|++ +|.++++|.|.
T Consensus        85 L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           85 IWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHcCCCCCCCCC
Confidence            999997 99999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=2.7e-18  Score=113.34  Aligned_cols=82  Identities=20%  Similarity=0.370  Sum_probs=73.4

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHh
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESR  134 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~  134 (203)
                      ++|.|..|++.|.. ..|..|+++|.++++|.|++|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   95 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL   95 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHH
Confidence            57888888888877 68899999999999999999999999 9999999999 6999999999999998 5799999988


Q ss_pred             hcCCCC
Q 028830          135 CTGVPE  140 (203)
Q Consensus       135 ~~~~~~  140 (203)
                      |.++..
T Consensus        96 H~~~~~  101 (106)
T 2ee8_A           96 HMQTSS  101 (106)
T ss_dssp             TTSCCC
T ss_pred             hCCCCC
Confidence            776543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=9.3e-19  Score=110.09  Aligned_cols=77  Identities=19%  Similarity=0.492  Sum_probs=70.1

Q ss_pred             CccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhh
Q 028830           60 PVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      +|.|..|++.|.. ..|..|+++|.++++|.|+.|++.|. ...|..|++. +++++|.|+.|++.|. ...|..|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            5789999999977 78999999999999999999999999 9999999999 6999999999999998 57999999877


Q ss_pred             c
Q 028830          136 T  136 (203)
Q Consensus       136 ~  136 (203)
                      +
T Consensus        81 ~   81 (82)
T 2kmk_A           81 T   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.5e-18  Score=112.50  Aligned_cols=87  Identities=17%  Similarity=0.398  Sum_probs=61.1

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHh
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKG   80 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~   80 (203)
                      .+.++++|.|+.|++.|. ...|..| +.|.++++|.|+.|++.|.....                        |..|+.
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~------------------------l~~H~~   57 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSS------------------------LNKHLR   57 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHH------------------------HHHHHH
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHH------------------------HHHHHH
Confidence            356777888888888887 7788888 77777777777776666665544                        445555


Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcc
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRT  113 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~  113 (203)
                      +|.++++|.|++|++.|. ...|..|+++ +++++
T Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           58 IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             HSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             HhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            666677777777777777 7777777777 45543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1.9e-19  Score=120.68  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             ccHHHH-HhhcCCCcccccccccccccccHHHHHHcC--C---C-CccCccChhhh--hH-HHHHhhHhccCCCCcccCc
Q 028830           22 SNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNT--H---A-PVACSQCSETM--ER-EILAIHKGENCPQRIVTCD   91 (203)
Q Consensus        22 ~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~--h---~-~~~C~~C~~~f--~~-~~l~~H~~~h~~~~~~~C~   91 (203)
                      ..|..| +.|.++++|.|+.|++.|.....|..|++.  |   + .+.|..|++.|  .. ..|..|+++|.++++|.|+
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~   84 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM   84 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCS
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECC
Confidence            345555 556666666666666666655555444443  2   1 22355555544  33 3555666666666777777


Q ss_pred             cCCCCCC-hhhHHHHHHH-hCCc
Q 028830           92 FCEFPLP-AVDLAEHQEV-CGNR  112 (203)
Q Consensus        92 ~C~~~f~-~~~l~~H~~~-~~~~  112 (203)
                      +|++.|. ...|..|+++ +...
T Consensus        85 ~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           85 YCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             SSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CCCCccCCHHHHHHHHHHhCCcc
Confidence            7777776 6677777666 4433

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=7.3e-18  Score=109.00  Aligned_cols=80  Identities=18%  Similarity=0.350  Sum_probs=66.3

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCC--cceecccchhhcc-hhHHHHHH
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGN--RTELCHLCNRYIR-LRERYNHE  132 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~--~~~~C~~C~~~f~-~~~l~~H~  132 (203)
                      ++|.|..|++.|.. ..|..|+++|.++++|.|+.|++.|. ...|..|++. +++  ++|.|+.|++.|. ...|..|+
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~   85 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI   85 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHH
T ss_pred             CCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHH
Confidence            46777777777766 67888888888899999999999998 9999999998 565  8999999999998 57999998


Q ss_pred             HhhcCC
Q 028830          133 SRCTGV  138 (203)
Q Consensus       133 ~~~~~~  138 (203)
                      +..|.+
T Consensus        86 ~~~H~~   91 (95)
T 2yt9_A           86 KQVHSG   91 (95)
T ss_dssp             HHTSCC
T ss_pred             HHhcCC
Confidence            755554

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.71  E-value=4.8e-18  Score=108.74  Aligned_cols=80  Identities=23%  Similarity=0.427  Sum_probs=68.5

Q ss_pred             CCccCc--cChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHH
Q 028830           59 APVACS--QCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHE  132 (203)
Q Consensus        59 ~~~~C~--~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~  132 (203)
                      ++|.|.  .|++.|.. ..|..|+++|.++++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|+
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   82 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT   82 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHH
Confidence            467786  58888876 67888888888899999999999999 9999999999 6999999999999998 57999999


Q ss_pred             HhhcCC
Q 028830          133 SRCTGV  138 (203)
Q Consensus       133 ~~~~~~  138 (203)
                      +.|+++
T Consensus        83 ~~H~~~   88 (90)
T 1a1h_A           83 KIHLRQ   88 (90)
T ss_dssp             GGGGC-
T ss_pred             HHhccc
Confidence            887654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.70  E-value=2.4e-18  Score=110.12  Aligned_cols=83  Identities=19%  Similarity=0.415  Sum_probs=58.7

Q ss_pred             CCCcccCc--cCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHhc
Q 028830            6 DETTKICS--HCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGE   81 (203)
Q Consensus         6 ~~k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~~   81 (203)
                      |++||.|+  .|++.|. ...|..| +.|.++++|.|+.|++.|.....|                        ..|+.+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l------------------------~~H~~~   56 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHL------------------------TTHIRT   56 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH------------------------HHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHH------------------------HHHHHH
Confidence            46788887  5888888 8888888 788887777777777777665544                        444555


Q ss_pred             cCCCCcccCccCCCCCC-hhhHHHHHHH-hCCc
Q 028830           82 NCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNR  112 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~  112 (203)
                      |.++++|.|+.|++.|. .+.|..|+++ ++++
T Consensus        57 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             HHCCCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             cCCCCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            66667777777777777 7777777777 3543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=4.8e-18  Score=113.82  Aligned_cols=91  Identities=15%  Similarity=0.214  Sum_probs=78.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-Hh--hcCCCccc-cccccccc--ccccHHHHHHcCC---CCccCccChhhh
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FA--HCSRNLER-CKVCGDMV--PRKYAEEHFLNTH---APVACSQCSETM   70 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~--h~~~~~~~-C~~C~~~f--~~~~~~~~~~~~h---~~~~C~~C~~~f   70 (203)
                      |++|++++||.|+.|++.|. ...|..| +.  |.+.+++. |+.|++.|  .....|..|+++|   ++|.|..|++.|
T Consensus        11 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f   90 (115)
T 2dmi_A           11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSF   90 (115)
T ss_dssp             CCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBC
T ss_pred             eeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCcc
Confidence            57899999999999999999 9999999 77  77777654 99999999  7777777888888   599999999999


Q ss_pred             hH-HHHHhhHhccCCCCcccCc
Q 028830           71 ER-EILAIHKGENCPQRIVTCD   91 (203)
Q Consensus        71 ~~-~~l~~H~~~h~~~~~~~C~   91 (203)
                      .. ..|..|++.|.......++
T Consensus        91 ~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           91 ESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             SSHHHHHHHHHHTTTTTCSCCC
T ss_pred             CCHHHHHHHHHHhCCcccCCCC
Confidence            88 7999999998776655544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.4e-17  Score=109.50  Aligned_cols=81  Identities=21%  Similarity=0.322  Sum_probs=47.0

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHh
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKG   80 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~   80 (203)
                      .|+++++|.| .|++.|. ...|..| +.|.++++|.|+.|++.|.....                        |..|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~------------------------l~~H~~   58 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHH------------------------LVGHMK   58 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHH------------------------HHHHHT
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHH------------------------HHHHHH
Confidence            4666666666 6666666 6666666 56655555555555555544433                        333344


Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHH
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +|.++++|.|++|++.|. ...|..|++.
T Consensus        59 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           59 IHTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             TTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             HcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            455556666666666665 6666666554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=4.6e-18  Score=113.04  Aligned_cols=79  Identities=19%  Similarity=0.373  Sum_probs=68.7

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHh
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESR  134 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~  134 (203)
                      ++|.| .|++.|.. ..|..|++.|.++++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            46677 67777766 57788888899999999999999999 9999999999 6999999999999998 5799999998


Q ss_pred             hcCC
Q 028830          135 CTGV  138 (203)
Q Consensus       135 ~~~~  138 (203)
                      ++..
T Consensus        88 ~~~~   91 (110)
T 2csh_A           88 CTKS   91 (110)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            8753

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.67  E-value=5.7e-18  Score=108.14  Aligned_cols=80  Identities=16%  Similarity=0.298  Sum_probs=71.5

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHhCCcceecccchhhcc-hhHHHHHHHhh
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRTELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      ++|.|..|++.|.. ..|..|+++|.++++|.|+.|++.|. ...|..|++++...+|.|+.|++.|. ...|..|++..
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARL   81 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHH
Confidence            47888889988877 78999999999999999999999999 99999999995568999999999998 57999999887


Q ss_pred             cCC
Q 028830          136 TGV  138 (203)
Q Consensus       136 ~~~  138 (203)
                      |..
T Consensus        82 h~~   84 (88)
T 1llm_C           82 KKL   84 (88)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=4.4e-17  Score=105.31  Aligned_cols=82  Identities=20%  Similarity=0.367  Sum_probs=61.6

Q ss_pred             CCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHhcc
Q 028830            5 SDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEN   82 (203)
Q Consensus         5 ~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~~h   82 (203)
                      +++++|.|+.|++.|. ...|..| +.|.++++|.|+.|++.|.....                        |..|++.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~------------------------l~~H~~~h   58 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDR------------------------MSYHVRSH   58 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHH------------------------HHHHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHH------------------------HHHHHHHh
Confidence            5677888888888887 7888888 77777777777777766665544                        44555566


Q ss_pred             CCC--CcccCccCCCCCC-hhhHHHHHHH-hC
Q 028830           83 CPQ--RIVTCDFCEFPLP-AVDLAEHQEV-CG  110 (203)
Q Consensus        83 ~~~--~~~~C~~C~~~f~-~~~l~~H~~~-~~  110 (203)
                      .++  ++|.|+.|++.|. ...|..|++. |.
T Consensus        59 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             CCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             cCCCCCceECCCccchhCCHHHHHHHHHHhcC
Confidence            665  8899999999998 8889999875 63

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.65  E-value=9.2e-17  Score=94.71  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=47.8

Q ss_pred             CCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcCC
Q 028830           85 QRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTGV  138 (203)
Q Consensus        85 ~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~  138 (203)
                      |+||.|++||+.|. .+.|..|+++ .|++||.|+.||+.|. ...|..|+++|.++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            78999999999999 9999999999 4999999999999998 57999999877554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.65  E-value=1.9e-17  Score=104.02  Aligned_cols=77  Identities=19%  Similarity=0.393  Sum_probs=57.0

Q ss_pred             cccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHhccCCCC
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQR   86 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~~h~~~~   86 (203)
                      ||.|+.|++.|. ...|..| +.|.++++|.|+.|++.|....                        .|..|+..|.+++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~------------------------~l~~H~~~h~~~~   56 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKS------------------------DMKKHTFIHTGEK   56 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHH------------------------HHHHHHHHHHTCC
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHH------------------------HHHHHHHHhcCCC
Confidence            577778888777 7777777 6777777776666666665554                        4455566667778


Q ss_pred             cccCccCCCCCC-hhhHHHHHHHh
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      +|.|+.|++.|. .+.|..|+++|
T Consensus        57 ~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           57 PHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CCcCCCcchhhCChHHHHHHHHhh
Confidence            888888888888 88888888874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.64  E-value=1.5e-16  Score=101.48  Aligned_cols=77  Identities=23%  Similarity=0.437  Sum_probs=68.7

Q ss_pred             CCccCcc--ChhhhhH-HHHHhhHhccCCCCcccCc--cCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHH
Q 028830           59 APVACSQ--CSETMER-EILAIHKGENCPQRIVTCD--FCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYN  130 (203)
Q Consensus        59 ~~~~C~~--C~~~f~~-~~l~~H~~~h~~~~~~~C~--~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~  130 (203)
                      ++|.|..  |++.|.. ..|..|+..|.++++|.|+  .|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL   83 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHH
Confidence            4688888  9998877 7899999999999999997  5999999 9999999999 6999999999999998 579999


Q ss_pred             HHHhh
Q 028830          131 HESRC  135 (203)
Q Consensus       131 H~~~~  135 (203)
                      |++.|
T Consensus        84 H~~~H   88 (89)
T 2wbs_A           84 HMKRH   88 (89)
T ss_dssp             HGGGG
T ss_pred             HHHhh
Confidence            99765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.64  E-value=6.5e-17  Score=95.36  Aligned_cols=53  Identities=23%  Similarity=0.467  Sum_probs=48.0

Q ss_pred             CCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC
Q 028830            6 DETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH   58 (203)
Q Consensus         6 ~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h   58 (203)
                      .||||.|++|++.|. .+.|..| +.|++++||.|++||+.|.....|..|+++|
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~H   55 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH   55 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCcc
Confidence            379999999999998 9999999 8999999999999999999988887777776

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=2.2e-16  Score=102.86  Aligned_cols=78  Identities=19%  Similarity=0.383  Sum_probs=67.3

Q ss_pred             CCccCcc--ChhhhhH-HHHHhhHhccCCCCcccCc--cCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHH
Q 028830           59 APVACSQ--CSETMER-EILAIHKGENCPQRIVTCD--FCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYN  130 (203)
Q Consensus        59 ~~~~C~~--C~~~f~~-~~l~~H~~~h~~~~~~~C~--~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~  130 (203)
                      ++|.|..  |++.|.. ..|..|++.|.++++|.|+  .|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   93 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL   93 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHH
Confidence            4788886  8888877 6888999999999999996  5999998 9999999998 6889999999999998 579999


Q ss_pred             HHHhhc
Q 028830          131 HESRCT  136 (203)
Q Consensus       131 H~~~~~  136 (203)
                      |++.|.
T Consensus        94 H~~~H~   99 (100)
T 2ebt_A           94 HMKRHQ   99 (100)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=9.9e-17  Score=102.30  Aligned_cols=75  Identities=17%  Similarity=0.328  Sum_probs=60.9

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC--CCccCccChhhhhH-HHHHhhHhc
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH--APVACSQCSETMER-EILAIHKGE   81 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h--~~~~C~~C~~~f~~-~~l~~H~~~   81 (203)
                      ++||.|+.|++.|. ...|..| +.|.++++|.|+.|++.|.....|..|++.|  .+|.|..|++.|.. ..|..|++.
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHH
Confidence            58999999999998 9999999 8999999999999999999887777776655  36667777777766 566666653

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.59  E-value=1.3e-16  Score=109.03  Aligned_cols=64  Identities=17%  Similarity=0.394  Sum_probs=54.4

Q ss_pred             HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHHhCCcceecccchhhcc-hhHHHHHHHhhcCC
Q 028830           73 EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRTELCHLCNRYIR-LRERYNHESRCTGV  138 (203)
Q Consensus        73 ~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~  138 (203)
                      ..|..|+ .|.++++|.|+.|++.|. ...|..|+++| ++||.|+.|++.|. ...|..|++.+++.
T Consensus        61 ~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           61 SYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            4566665 477889999999999998 99999999889 88999999999998 57999999888764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.58  E-value=6.6e-16  Score=97.47  Aligned_cols=74  Identities=20%  Similarity=0.463  Sum_probs=66.7

Q ss_pred             CccC--ccChhhhhH-HHHHhhHhccCCCCcccCcc--CCCCCC-hhhHHHHHHH-hCCcceeccc---chhhcc-hhHH
Q 028830           60 PVAC--SQCSETMER-EILAIHKGENCPQRIVTCDF--CEFPLP-AVDLAEHQEV-CGNRTELCHL---CNRYIR-LRER  128 (203)
Q Consensus        60 ~~~C--~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~--C~~~f~-~~~l~~H~~~-~~~~~~~C~~---C~~~f~-~~~l  128 (203)
                      ||.|  ..|++.|.. +.|..|+++|.++++|.|+.  |++.|. ...|..|+++ ++   |.|+.   |++.|. ...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            5788  889999977 78999999999999999988  999999 9999999999 46   99999   999998 5799


Q ss_pred             HHHHHhhc
Q 028830          129 YNHESRCT  136 (203)
Q Consensus       129 ~~H~~~~~  136 (203)
                      ..|++.+|
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99998764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.57  E-value=7.7e-16  Score=98.10  Aligned_cols=79  Identities=24%  Similarity=0.436  Sum_probs=52.2

Q ss_pred             CCcccCcc--CCCcCc-cccHHHH-HhhcCCCccccc--ccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHh
Q 028830            7 ETTKICSH--CDRAIP-SSNIDLH-FAHCSRNLERCK--VCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKG   80 (203)
Q Consensus         7 ~k~y~C~~--C~~~f~-~~~l~~H-~~h~~~~~~~C~--~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~   80 (203)
                      .++|.|+.  |++.|. ...|..| +.|.++++|.|+  .|++.|...                        ..|..|+.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~------------------------~~l~~H~~   58 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARS------------------------DELTRHYR   58 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSH------------------------HHHHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCH------------------------HHHHHHHH
Confidence            34566655  666665 6666666 556555555554  355444443                        45666667


Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      +|.++++|.|+.|++.|. .+.|..|+++|
T Consensus        59 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           59 KHTGHRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             HHHCCCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             HcCCCCCccCCCCCcccCCHHHHHHHHHhh
Confidence            777788888888888888 88888887764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.56  E-value=1.6e-15  Score=98.79  Aligned_cols=79  Identities=20%  Similarity=0.386  Sum_probs=57.9

Q ss_pred             CCcccCcc--CCCcCc-cccHHHH-HhhcCCCccccc--ccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHh
Q 028830            7 ETTKICSH--CDRAIP-SSNIDLH-FAHCSRNLERCK--VCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKG   80 (203)
Q Consensus         7 ~k~y~C~~--C~~~f~-~~~l~~H-~~h~~~~~~~C~--~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~   80 (203)
                      +++|.|..  |++.|. ...|..| +.|.++++|.|+  .|++.|...                        ..|..|++
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~------------------------~~l~~H~~   68 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARS------------------------DELTRHYR   68 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSH------------------------HHHHHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCH------------------------HHHHHHHH
Confidence            45677764  777776 7777777 667666666664  355555443                        35666677


Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      +|.++++|.|++|++.|. ...|..|+++|
T Consensus        69 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             HHTSCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             HhCCCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            788889999999999998 99999998875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.56  E-value=2.1e-16  Score=107.96  Aligned_cols=107  Identities=10%  Similarity=0.113  Sum_probs=82.6

Q ss_pred             cccCCCCcccCccCCCcCccccHHHH----HhhcCCCcccccccccccc------cccHHHHHHcCC--CCccCccChhh
Q 028830            2 AMTSDETTKICSHCDRAIPSSNIDLH----FAHCSRNLERCKVCGDMVP------RKYAEEHFLNTH--APVACSQCSET   69 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~~~~l~~H----~~h~~~~~~~C~~C~~~f~------~~~~~~~~~~~h--~~~~C~~C~~~   69 (203)
                      .+++|+++|.|...+... ...+..+    ......+.+.|++|++.|.      ...++.+|+..+  ++|.|..|++.
T Consensus         5 ~~~~~~k~~~~~~k~~~~-~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C~~C~k~   83 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFI-HVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMP   83 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEE-ECCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEECTTTCCE
T ss_pred             hhcccccccccccCCeee-eecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeECCCCCcc
Confidence            468899999997655432 2233333    2223356788999888776      346777777422  69999999999


Q ss_pred             hhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCC
Q 028830           70 MER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGN  111 (203)
Q Consensus        70 f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~  111 (203)
                      |.. ..|..|+++|  +++|.|+.|++.|. .+.|..|+++ |+.
T Consensus        84 f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           84 FSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             ESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             cCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            988 7999999998  89999999999999 9999999999 554

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=1.4e-15  Score=94.80  Aligned_cols=66  Identities=20%  Similarity=0.429  Sum_probs=54.4

Q ss_pred             CCccCcc--ChhhhhH-HHHHhhHh-ccCCCCcccCcc--CCCCCC-hhhHHHHHHH-hCCcceecccchhhcc
Q 028830           59 APVACSQ--CSETMER-EILAIHKG-ENCPQRIVTCDF--CEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR  124 (203)
Q Consensus        59 ~~~~C~~--C~~~f~~-~~l~~H~~-~h~~~~~~~C~~--C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~  124 (203)
                      ++|.|..  |++.|.. ..|..|++ .|.++++|.|+.  |++.|. ...|..|+++ +++++|.|+.|++.|.
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            3566665  7777766 67888887 688889999988  999998 9999999998 5889999999998874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=3.1e-15  Score=92.87  Aligned_cols=67  Identities=10%  Similarity=0.100  Sum_probs=59.1

Q ss_pred             HHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-h-C-Ccceecccchhhcc-hhHHHHHHHhhcCCCCC
Q 028830           75 LAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-C-G-NRTELCHLCNRYIR-LRERYNHESRCTGVPEN  141 (203)
Q Consensus        75 l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~-~-~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~  141 (203)
                      |..|+++|.++++|.|++|++.|. ...|..|++. | + +++|.|+.|++.|. ...|..|++.+|....+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            457899999999999999999999 9999999985 6 3 38999999999998 57999999998876644

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.50  E-value=3.3e-15  Score=94.19  Aligned_cols=57  Identities=19%  Similarity=0.475  Sum_probs=41.9

Q ss_pred             cccC--ccCCCcCc-cccHHHH-HhhcCCCcccccc--cccccccccHHHHHHcCCCCccCcc
Q 028830            9 TKIC--SHCDRAIP-SSNIDLH-FAHCSRNLERCKV--CGDMVPRKYAEEHFLNTHAPVACSQ   65 (203)
Q Consensus         9 ~y~C--~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~--C~~~f~~~~~~~~~~~~h~~~~C~~   65 (203)
                      ||.|  +.|++.|. ...|..| +.|.++++|.|+.  |++.|.....+..|++.|..|.|..
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~C~~   63 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK   63 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHSEECCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCCCC
Confidence            6888  88999998 8889999 7888888888877  8888877766655554442233433

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.3e-14  Score=91.70  Aligned_cols=76  Identities=24%  Similarity=0.368  Sum_probs=44.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhH-HHHHh
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMER-EILAI   77 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~-~~l~~   77 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.....                     .-++|.|..|++.|.. ..|..
T Consensus         7 ~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~---------------------~~~~~~C~~C~~~f~~~~~L~~   65 (86)
T 1x6h_A            7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF---------------------VPAAFVCSKCGKTFTRRNTMAR   65 (86)
T ss_dssp             STTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSC---------------------CCCCEECSSSCCEESCHHHHHH
T ss_pred             cceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcC---------------------CCcceECCCCCChhCCHHHHHH
Confidence            34555666666666666665 5556666 33332200                     0024555555555555 56677


Q ss_pred             hHhccCCCCcccCccCCCCC
Q 028830           78 HKGENCPQRIVTCDFCEFPL   97 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f   97 (203)
                      |+++|.+++++.|..|+..|
T Consensus        66 H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           66 HADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHccCCCCcccCCCCCCC
Confidence            77778888888888887765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.2e-14  Score=90.16  Aligned_cols=57  Identities=19%  Similarity=0.405  Sum_probs=32.8

Q ss_pred             CccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           60 PVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      +|.|..|++.|.. ..|..|+++|.++++|.|++|++.|. ...|..|+++ ++++||.|
T Consensus        18 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            4555555555544 45555555555566666666666665 6666666655 35566554

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.1e-14  Score=90.72  Aligned_cols=70  Identities=20%  Similarity=0.317  Sum_probs=51.3

Q ss_pred             cCCCCcccCcc--CCCcCc-cccHHHH-H-hhcCCCcccccc--cccccccccHHHHHHcCCCCccCccChhhhhHHHHH
Q 028830            4 TSDETTKICSH--CDRAIP-SSNIDLH-F-AHCSRNLERCKV--CGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILA   76 (203)
Q Consensus         4 h~~~k~y~C~~--C~~~f~-~~~l~~H-~-~h~~~~~~~C~~--C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~   76 (203)
                      .+++++|.|..  |++.|. ...|..| + .|.++++|.|+.  |++.|.....|                        .
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L------------------------~   57 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHL------------------------K   57 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHH------------------------H
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHH------------------------H
Confidence            35778888875  888887 8888888 6 688888887777  77777665544                        4


Q ss_pred             hhHhccCCCCcccCccCCCCC
Q 028830           77 IHKGENCPQRIVTCDFCEFPL   97 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f   97 (203)
                      .|+++|.++++|.|++|++.|
T Consensus        58 ~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           58 EHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             HHHHHHHTSCCCSCCSSSCCC
T ss_pred             HHHHHhCCCCCeeCCCCCCCC
Confidence            455556667777777777776

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=2.8e-14  Score=87.32  Aligned_cols=62  Identities=23%  Similarity=0.353  Sum_probs=54.8

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcCCC
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTGVP  139 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~  139 (203)
                      +.++|.++++|.|++|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.|+.+.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            346788999999999999999 9999999999 5899999999999998 579999998887654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=5.8e-14  Score=87.20  Aligned_cols=62  Identities=16%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHH-hC---Ccceecccchhhcc-hhHHHHHHHhhcCCCCCC
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CG---NRTELCHLCNRYIR-LRERYNHESRCTGVPENT  142 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~---~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~~  142 (203)
                      .|.++++|.|++|++.|. ...|..|+++ ++   +++|.|+.|++.|. ...|..|++.+|......
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            378899999999999999 9999999999 44   89999999999998 579999998777765433

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.47  E-value=3e-14  Score=89.90  Aligned_cols=59  Identities=14%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcCC
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTGV  138 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~  138 (203)
                      ..+.+.++|.|++|++.|. ...|.+|+++ ++++||.|+.|++.|. ...|..|++..|..
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            3455678888999999998 8889999888 5888999999999887 56888898666654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=4.3e-14  Score=89.28  Aligned_cols=65  Identities=14%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             HHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCC----cceecccchhhcc-hhHHHHHHHhhcCCC
Q 028830           75 LAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGN----RTELCHLCNRYIR-LRERYNHESRCTGVP  139 (203)
Q Consensus        75 l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~----~~~~C~~C~~~f~-~~~l~~H~~~~~~~~  139 (203)
                      |..|+++|.++++|.|++|++.|. ...|..|++. ++.    ++|.|+.|++.|. ...|..|++.++...
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   74 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD   74 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCC
Confidence            567888888889999999999998 8889999887 654    7899999999887 568889988776654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=1.6e-14  Score=88.43  Aligned_cols=58  Identities=22%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH   58 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h   58 (203)
                      +++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|++.|.....|..|+++|
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            46899999999999999998 9999999 8999999999999999999988777777655

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=4.5e-14  Score=87.50  Aligned_cols=63  Identities=17%  Similarity=0.349  Sum_probs=37.9

Q ss_pred             cCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHhhHhc
Q 028830            4 TSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGE   81 (203)
Q Consensus         4 h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~H~~~   81 (203)
                      +.++++|.|+.|++.|. ...|..| +.|.++++|.|++|++.|....                        .|..|+++
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~------------------------~L~~H~~~   68 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS------------------------HLIGHHRV   68 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHH------------------------HHHHHGGG
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHH------------------------HHHHHHHH
Confidence            44556666666666665 6666666 5566555555555555555544                        45556666


Q ss_pred             cCCCCcccC
Q 028830           82 NCPQRIVTC   90 (203)
Q Consensus        82 h~~~~~~~C   90 (203)
                      |.++++|.|
T Consensus        69 H~~~~p~~C   77 (77)
T 2cot_A           69 HTGSGPSSG   77 (77)
T ss_dssp             SCCCCCCCC
T ss_pred             hCCCCCCCC
Confidence            666777665

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.45  E-value=7.6e-14  Score=81.22  Aligned_cols=54  Identities=17%  Similarity=0.259  Sum_probs=44.8

Q ss_pred             CCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcC
Q 028830           84 PQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        84 ~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      |+++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.+|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            468999999999999 9999999999 6999999999999998 5799999988763

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=7.1e-14  Score=90.45  Aligned_cols=62  Identities=23%  Similarity=0.319  Sum_probs=40.5

Q ss_pred             HHHhhHhccCCCCcccCccCCCCC-C-hhhHHHHHHHhCCcceecccchhhcc-hhHHHHH-HHhh
Q 028830           74 ILAIHKGENCPQRIVTCDFCEFPL-P-AVDLAEHQEVCGNRTELCHLCNRYIR-LRERYNH-ESRC  135 (203)
Q Consensus        74 ~l~~H~~~h~~~~~~~C~~C~~~f-~-~~~l~~H~~~~~~~~~~C~~C~~~f~-~~~l~~H-~~~~  135 (203)
                      .|..|++.+.++++|.|+.|++.| . ...|..|+++|++++|.|..|++.|. ...|..| ++.|
T Consensus        21 ~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           21 LEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             HHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            455555555566677777777777 6 67777777666666777777777776 3567777 5443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=5.4e-14  Score=91.04  Aligned_cols=67  Identities=21%  Similarity=0.306  Sum_probs=48.3

Q ss_pred             cccHHHHHHcCC---CCccCccChhhh-hH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHH-HHHhCCcce
Q 028830           47 RKYAEEHFLNTH---APVACSQCSETM-ER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEH-QEVCGNRTE  114 (203)
Q Consensus        47 ~~~~~~~~~~~h---~~~~C~~C~~~f-~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H-~~~~~~~~~  114 (203)
                      ....+..|++.|   ++|.|..|++.| .. ..|..|+++| ++++|.|.+|++.|. ...|..| +++|.++||
T Consensus        18 ~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           18 AGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             TTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            333444444433   466666666666 45 5677888888 899999999999999 9999999 777766665

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=3.7e-14  Score=85.17  Aligned_cols=58  Identities=10%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-h--CCcceecccchhhcc-hhHHHHHHHhhcC
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-C--GNRTELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~--~~~~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      ++|.++++|.|+.|++.|. ...|..|++. |  ++++|.|+.|++.|. ...|..|++.+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            4677889999999999999 9999999998 7  789999999999998 5799999988875

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.6e-14  Score=93.87  Aligned_cols=66  Identities=15%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             HHHhhHhccCCCCcccCccCCCCCC--hhhHHHHHHH-hC-Ccceecccchhhcc-hhHHHHHHHhhcCCC
Q 028830           74 ILAIHKGENCPQRIVTCDFCEFPLP--AVDLAEHQEV-CG-NRTELCHLCNRYIR-LRERYNHESRCTGVP  139 (203)
Q Consensus        74 ~l~~H~~~h~~~~~~~C~~C~~~f~--~~~l~~H~~~-~~-~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~  139 (203)
                      .+..|+++|.++++|.|+.|++.|.  ...|..|+++ ++ +++|.|+.|++.|. ...|..|++.++++.
T Consensus        11 ~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   81 (98)
T 2gqj_A           11 PEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK   81 (98)
T ss_dssp             SCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred             cHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence            3567888888889999999999985  6789999988 56 88999999999998 579999998887654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.3e-13  Score=83.82  Aligned_cols=59  Identities=17%  Similarity=0.377  Sum_probs=50.8

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcCCC
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTGVP  139 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~  139 (203)
                      .+.++++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.++++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   64 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM   64 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence            467789999999999998 9999999998 5889999999999998 579999998887654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=7.2e-14  Score=90.79  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             ccccccHHHHHHcCC---CCccCccChhhhh-H-HHHHhhHhccCC-CCcccCccCCCCCC-hhhHHHHHHH-hCCccee
Q 028830           44 MVPRKYAEEHFLNTH---APVACSQCSETME-R-EILAIHKGENCP-QRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTEL  115 (203)
Q Consensus        44 ~f~~~~~~~~~~~~h---~~~~C~~C~~~f~-~-~~l~~H~~~h~~-~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~  115 (203)
                      .+.....+..|+++|   ++|.|..|++.|. . ..|..|+++|.+ +++|.|++|++.|. ...|..|+++ ++++|+.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            344556677788888   5999999999999 8 799999999998 99999999999999 9999999999 7888865


Q ss_pred             c
Q 028830          116 C  116 (203)
Q Consensus       116 C  116 (203)
                      .
T Consensus        85 ~   85 (98)
T 2gqj_A           85 A   85 (98)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=4.8e-14  Score=92.05  Aligned_cols=67  Identities=16%  Similarity=0.172  Sum_probs=43.9

Q ss_pred             cCCCCcccCccCCCcCc-cccHHHH-H-hh---cCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhHHHHHh
Q 028830            4 TSDETTKICSHCDRAIP-SSNIDLH-F-AH---CSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAI   77 (203)
Q Consensus         4 h~~~k~y~C~~C~~~f~-~~~l~~H-~-~h---~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~~~l~~   77 (203)
                      -+|++||.|+.|++.|. .+.|..| + .|   .+++||.|+.||+.|....                        .|..
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~------------------------~L~~   68 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD------------------------ALSE   68 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTH------------------------HHHT
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHH------------------------HHHH
Confidence            35677777777777777 7777777 4 36   4456666666666665554                        4555


Q ss_pred             h-HhccCCCCcccCccCC
Q 028830           78 H-KGENCPQRIVTCDFCE   94 (203)
Q Consensus        78 H-~~~h~~~~~~~C~~C~   94 (203)
                      | +++|++++||.|..+.
T Consensus        69 H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           69 HNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             HHHHTSTTCCCEEEEECC
T ss_pred             HHHHhcCCCCCeeCCccc
Confidence            6 5667777777777643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.6e-14  Score=85.83  Aligned_cols=57  Identities=23%  Similarity=0.297  Sum_probs=49.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-Hh-h-cCCCcccccccccccccccHHHHHHcC
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FA-H-CSRNLERCKVCGDMVPRKYAEEHFLNT   57 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~-h-~~~~~~~C~~C~~~f~~~~~~~~~~~~   57 (203)
                      +++|++++||.|+.|++.|. ..+|..| +. | .++++|.|+.|++.|.....|..|++.
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            57899999999999999999 9999999 66 7 689999999999999999777776653

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.8e-14  Score=93.18  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=39.7

Q ss_pred             CccCccChhhhhH-HHHHhhHh-cc---CCCCcccCccCCCCCC-hhhHHHH-HHH-hCCcceecccc
Q 028830           60 PVACSQCSETMER-EILAIHKG-EN---CPQRIVTCDFCEFPLP-AVDLAEH-QEV-CGNRTELCHLC  119 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~-~h---~~~~~~~C~~C~~~f~-~~~l~~H-~~~-~~~~~~~C~~C  119 (203)
                      +|.|..|++.|.. +.|..|++ +|   .++++|.|+.||+.|. .+.|..| +++ .+++||.|..+
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            5566666666655 45666665 36   4567777777777777 7777777 566 47777777653

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.41  E-value=7.5e-14  Score=85.81  Aligned_cols=57  Identities=21%  Similarity=0.437  Sum_probs=43.3

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcC
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      .+.++++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.|.+
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            355677888888888887 8888888877 4777888888888777 4688888876654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=87.12  Aligned_cols=57  Identities=12%  Similarity=0.275  Sum_probs=46.1

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHH-HcCC
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHF-LNTH   58 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~-~~~h   58 (203)
                      .+++.+++|.|++|++.|. ...|..| +.|.+++||.|++|++.|.....|..| +++|
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            3566778899999999998 8889999 788888899999999998888666666 3555

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.38  E-value=6.7e-13  Score=81.47  Aligned_cols=56  Identities=21%  Similarity=0.517  Sum_probs=52.7

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcce
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTE  114 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~  114 (203)
                      ++|.|..|++.|.. ..|..|+++|.++++|.|..|++.|. ...|.+|+++ ++++||
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            58999999999988 79999999999999999999999999 9999999999 588876

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=1.8e-13  Score=84.77  Aligned_cols=57  Identities=21%  Similarity=0.365  Sum_probs=46.7

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-H-hhcCC-CcccccccccccccccHHHHHHcC
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-F-AHCSR-NLERCKVCGDMVPRKYAEEHFLNT   57 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~-~h~~~-~~~~C~~C~~~f~~~~~~~~~~~~   57 (203)
                      |++|++++||.|++|++.|. ...|..| + .|.++ ++|.|+.|++.|.....|..|++.
T Consensus         7 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A            7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             CCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHH
T ss_pred             ccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHH
Confidence            57889999999999999998 8999999 5 67764 788888888888888666666654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=1.6e-13  Score=83.41  Aligned_cols=56  Identities=16%  Similarity=0.370  Sum_probs=47.4

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH   58 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h   58 (203)
                      .|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|++.|.....|..|++.|
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h   60 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF   60 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHH
Confidence            578899999999999998 8999999 7899999999999999988887666666544

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3.3e-15  Score=91.50  Aligned_cols=69  Identities=14%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhH-HHHHhhHhccCCCCcccCccC
Q 028830           21 SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMER-EILAIHKGENCPQRIVTCDFC   93 (203)
Q Consensus        21 ~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C   93 (203)
                      ...|..| +.|.++++|.|+.|++.|.....+..    -++|.|..|++.|.. +.|..|+++|.++++|.|++|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~----~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR----RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC----SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc----CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            3567778 78888888999999998888754433    368899999998888 688899999999999999887

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.36  E-value=1.6e-13  Score=79.88  Aligned_cols=52  Identities=17%  Similarity=0.416  Sum_probs=43.7

Q ss_pred             CCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcC
Q 028830            6 DETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNT   57 (203)
Q Consensus         6 ~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~   57 (203)
                      |++||.|+.|++.|. ...|..| +.|.++++|.|+.|++.|.....|..|++.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            578999999999999 9999999 899999999999999999999777777654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.33  E-value=4.6e-13  Score=77.83  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=34.4

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcC
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      ||.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.++.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            466777777776 7777777776 4667777777777776 3577777765544

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.33  E-value=1.6e-12  Score=75.46  Aligned_cols=53  Identities=19%  Similarity=0.489  Sum_probs=49.1

Q ss_pred             CccCccChhhhhH-HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCc
Q 028830           60 PVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNR  112 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~  112 (203)
                      ||.|..|++.|.. ..|..|+++|.++++|.|+.|++.|. .+.|..|+++ ++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            6899999999988 79999999999999999999999999 9999999998 4553

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5e-13  Score=82.91  Aligned_cols=56  Identities=16%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcC---CCcccccccccccccccHHHHHH-cCC
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCS---RNLERCKVCGDMVPRKYAEEHFL-NTH   58 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~---~~~~~C~~C~~~f~~~~~~~~~~-~~h   58 (203)
                      .|++++||.|++|++.|. ...|..| +.|.+   +++|.|++|++.|.....|..|+ ..|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhC
Confidence            489999999999999998 9999999 88885   78999999999998887666665 445

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.9e-12  Score=76.00  Aligned_cols=52  Identities=21%  Similarity=0.420  Sum_probs=39.2

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhhcC
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      ++|.|+.|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++..|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            4678888888887 8888888887 5777888888888887 4688888744443

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.30  E-value=1.8e-12  Score=71.95  Aligned_cols=41  Identities=15%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            68999999999999999999 9999999 89999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.8e-12  Score=71.99  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=39.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            68899999999999999999 9999999 89999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.30  E-value=1.7e-12  Score=71.99  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            4 GSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             cCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.29  E-value=1.9e-12  Score=71.89  Aligned_cols=41  Identities=15%  Similarity=0.232  Sum_probs=39.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.4e-12  Score=79.78  Aligned_cols=57  Identities=21%  Similarity=0.417  Sum_probs=51.1

Q ss_pred             cccCCCCcccCc--cCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC
Q 028830            2 AMTSDETTKICS--HCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH   58 (203)
Q Consensus         2 ~~h~~~k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h   58 (203)
                      .+|+++++|.|+  .|++.|. ...|..| +.|.++++|.|+.|++.|.....|..|+++|
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            467899999997  6999998 9999999 8999999999999999999998888888776

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.1e-12  Score=71.68  Aligned_cols=41  Identities=12%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.+++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.5e-12  Score=71.56  Aligned_cols=41  Identities=22%  Similarity=0.273  Sum_probs=39.2

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ..+|..| +.|.++++|.|+.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68999999999999999999 9999999 89999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.9e-12  Score=71.79  Aligned_cols=41  Identities=15%  Similarity=0.192  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ..+|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68999999999999999999 9999999 89999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.3e-12  Score=71.49  Aligned_cols=41  Identities=15%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.9e-12  Score=71.78  Aligned_cols=41  Identities=12%  Similarity=0.161  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ..+|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            67899999999999999999 9999999 89999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2e-12  Score=71.78  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=39.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      +++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.2e-12  Score=71.56  Aligned_cols=41  Identities=20%  Similarity=0.249  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      +++|++++||.|++|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.9e-12  Score=71.78  Aligned_cols=41  Identities=17%  Similarity=0.281  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             cCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.7e-12  Score=72.06  Aligned_cols=41  Identities=15%  Similarity=0.243  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999 9999999 89999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.7e-12  Score=71.99  Aligned_cols=41  Identities=17%  Similarity=0.159  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. .+.|..| +.|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.9e-12  Score=71.78  Aligned_cols=41  Identities=15%  Similarity=0.223  Sum_probs=39.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             cCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68899999999999999999 9999999 89999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2e-12  Score=71.76  Aligned_cols=41  Identities=15%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.8e-12  Score=71.09  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.27  E-value=2e-12  Score=71.79  Aligned_cols=41  Identities=12%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      +++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            68999999999999999999 9999999 89999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.5e-12  Score=71.30  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ..+|..| +.|.+++||.|+.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            4 GSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             ccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.27  E-value=2e-12  Score=71.72  Aligned_cols=41  Identities=15%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             ccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.2e-12  Score=71.54  Aligned_cols=41  Identities=12%  Similarity=0.228  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999 9999999 89999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.4e-12  Score=71.35  Aligned_cols=41  Identities=17%  Similarity=0.262  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.9e-12  Score=71.82  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            68999999999999999999 9999999 89999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=71.90  Aligned_cols=41  Identities=15%  Similarity=0.216  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            67899999999999999999 9999999 89999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.27  E-value=2.1e-12  Score=71.57  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|++++||.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=71.62  Aligned_cols=41  Identities=15%  Similarity=0.264  Sum_probs=39.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.26  E-value=2.5e-12  Score=71.28  Aligned_cols=41  Identities=15%  Similarity=0.187  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999 9999999 89999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=71.67  Aligned_cols=41  Identities=22%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.2e-12  Score=71.53  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            4 GSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.3e-12  Score=71.49  Aligned_cols=41  Identities=17%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.+++||.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.5e-12  Score=71.34  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            4 GSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=5.6e-13  Score=82.15  Aligned_cols=65  Identities=32%  Similarity=0.734  Sum_probs=58.6

Q ss_pred             HHHhhHhccCCCCcccCccCCCCCChhhHHHHHHHhCCcceecccchhhcchhHHHHHHHhhcCC
Q 028830           74 ILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGV  138 (203)
Q Consensus        74 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~l~~H~~~~~~~  138 (203)
                      .|..|+.++++++++.|+.|++.|..+.|..|+..++++||.|+.|++.|....|..|++.+...
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTGGGTHHHHBTTB
T ss_pred             HHHhhCcccCCCcccCCcccChHhhHHHHHHHHhHcCCCceEcccCCCcCcHHHHHHHHHHccCC
Confidence            46789999999999999999999999999999933899999999999998889999999887654

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=71.60  Aligned_cols=41  Identities=15%  Similarity=0.213  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.+++||.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.6e-12  Score=71.25  Aligned_cols=41  Identities=20%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      +++|++++||.|+.|++.|. ...|..| +.|+++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.7e-12  Score=71.13  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-12  Score=71.43  Aligned_cols=41  Identities=17%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|+++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.4e-12  Score=71.44  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=39.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            68999999999999999999 9999999 89999999999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=4.6e-12  Score=81.38  Aligned_cols=58  Identities=16%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             CccCccChhhhhH-HHHHhhHhc-cCCCCc--------ccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           60 PVACSQCSETMER-EILAIHKGE-NCPQRI--------VTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~~-h~~~~~--------~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .+.|..|++.|.. ..|..|+++ |.++++        |.|+.|++.|. ...|..|+++ ++++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4678888888877 688888887 888777        89999999999 9999999999 599999986

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.6e-12  Score=71.22  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            4 GSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             ccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.4e-12  Score=71.43  Aligned_cols=41  Identities=15%  Similarity=0.264  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.+++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3e-12  Score=70.94  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.7e-12  Score=71.16  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|+++++|.|+.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4e-12  Score=76.23  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=38.4

Q ss_pred             cCCCCcccCccCCCCCChhhHHHHHHHhCCcceecc-cchhhcc-hhHHHHHHHhh
Q 028830           82 NCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH-LCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~~~~l~~H~~~~~~~~~~C~-~C~~~f~-~~~l~~H~~~~  135 (203)
                      .+++++|.|+.|++.|..+.|..|+++++++||.|+ .|++.|. ...|..|++.|
T Consensus         5 ~C~~~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCCCEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             cCCCCCeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            456677777777777776667777766677777777 7777776 45777777654

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.6e-12  Score=71.30  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             cCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.6e-12  Score=71.21  Aligned_cols=41  Identities=17%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|+++++|.|+.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.4e-12  Score=71.40  Aligned_cols=41  Identities=12%  Similarity=0.191  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=4.2e-12  Score=74.52  Aligned_cols=51  Identities=20%  Similarity=0.430  Sum_probs=44.6

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHH-cCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFL-NTH   58 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~-~~h   58 (203)
                      +||.|+.|++.|. ...|..| +.|.++++|.|+.|++.|.....|..|+ ..|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHc
Confidence            5899999999998 9999999 8999999999999999999887777774 566

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.4e-12  Score=70.59  Aligned_cols=41  Identities=12%  Similarity=0.142  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-H-hhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-F-AHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~-~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| + .|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            68899999999999999999 9999999 8 9999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=5.9e-12  Score=76.90  Aligned_cols=56  Identities=18%  Similarity=0.306  Sum_probs=49.3

Q ss_pred             hccCCCCcccCc--cCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhh
Q 028830           80 GENCPQRIVTCD--FCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        80 ~~h~~~~~~~C~--~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      .++.++++|.|+  .|++.|. ...|..|+++ +++++|.|+.|++.|. ...|..|++.|
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            446788999997  5999999 9999999999 6999999999999998 57999998764

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.24  E-value=4.1e-12  Score=70.44  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=40.2

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5888999999999999999999 9999999999 59999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=4.1e-12  Score=73.04  Aligned_cols=45  Identities=20%  Similarity=0.357  Sum_probs=42.2

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-H-hhcCCCccccccccccccc
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-F-AHCSRNLERCKVCGDMVPR   47 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~-~h~~~~~~~C~~C~~~f~~   47 (203)
                      .|++++||.|++|++.|. ...|..| + .|.++++|.|++|++.|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            578899999999999999 9999999 6 8999999999999999975

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.2e-12  Score=71.59  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            67899999999999999999 9999999 89999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.5e-12  Score=71.32  Aligned_cols=41  Identities=17%  Similarity=0.219  Sum_probs=39.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      +++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.6e-12  Score=70.64  Aligned_cols=41  Identities=15%  Similarity=0.247  Sum_probs=38.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      +++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3e-12  Score=71.02  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=38.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|+.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             ccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999987

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.8e-13  Score=82.14  Aligned_cols=60  Identities=15%  Similarity=0.201  Sum_probs=54.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHHHhhcCCCcccccccccccccccHHHHHHcCC---CCccCccC
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTH---APVACSQC   66 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h---~~~~C~~C   66 (203)
                      |++|.+++||.|+.|++.|. ...|..      +++|.|+.|++.|.....+..|+++|   ++|.|+.|
T Consensus        10 ~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           10 QKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            57899999999999999998 888764      78999999999999998888888888   58999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.2e-12  Score=69.98  Aligned_cols=43  Identities=14%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 59999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.3e-12  Score=70.33  Aligned_cols=43  Identities=14%  Similarity=0.240  Sum_probs=40.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 59999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.5e-12  Score=69.86  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=40.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5888999999999999999999 9999999999 59999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.3e-12  Score=70.33  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=38.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.+++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999875

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.22  E-value=5.5e-12  Score=69.92  Aligned_cols=43  Identities=12%  Similarity=0.149  Sum_probs=40.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|.+|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4788999999999999999999 9999999999 59999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.3e-12  Score=70.36  Aligned_cols=43  Identities=14%  Similarity=0.217  Sum_probs=39.7

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.22  E-value=4.4e-12  Score=70.30  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=5e-12  Score=70.06  Aligned_cols=43  Identities=16%  Similarity=0.264  Sum_probs=39.9

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 59999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.5e-12  Score=70.25  Aligned_cols=43  Identities=14%  Similarity=0.176  Sum_probs=40.3

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5888999999999999999999 9999999999 59999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.2e-12  Score=70.41  Aligned_cols=43  Identities=14%  Similarity=0.122  Sum_probs=40.3

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5888999999999999999999 9999999999 69999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5e-12  Score=70.03  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 59999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.3e-12  Score=70.33  Aligned_cols=43  Identities=16%  Similarity=0.247  Sum_probs=40.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788999999999999999999 9999999999 59999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=4.9e-12  Score=69.41  Aligned_cols=42  Identities=14%  Similarity=0.185  Sum_probs=38.9

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      |+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            677899999999999999999 9999999999 59999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.6e-12  Score=70.24  Aligned_cols=43  Identities=14%  Similarity=0.182  Sum_probs=40.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 59999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.8e-12  Score=70.58  Aligned_cols=43  Identities=14%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 59999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6.8e-12  Score=69.54  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.7e-12  Score=70.19  Aligned_cols=43  Identities=16%  Similarity=0.277  Sum_probs=40.2

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 59999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6.9e-12  Score=69.52  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=38.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999 9999999 89999999999875

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6.2e-12  Score=69.68  Aligned_cols=43  Identities=12%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|.+|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.20  E-value=4.4e-12  Score=70.29  Aligned_cols=43  Identities=14%  Similarity=0.251  Sum_probs=39.9

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 69999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=8e-12  Score=69.28  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=39.9

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|.+|+++ +++++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4778899999999999999999 9999999999 69999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.7e-12  Score=69.83  Aligned_cols=43  Identities=16%  Similarity=0.232  Sum_probs=40.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 59999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=7e-12  Score=69.50  Aligned_cols=43  Identities=12%  Similarity=0.119  Sum_probs=39.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|++|++.|. .+.|.+|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.1e-12  Score=70.03  Aligned_cols=43  Identities=12%  Similarity=0.190  Sum_probs=40.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 59999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.9e-12  Score=69.79  Aligned_cols=43  Identities=12%  Similarity=0.167  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5888899999999999999999 9999999999 59999999886

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.6e-12  Score=70.19  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.4e-12  Score=70.30  Aligned_cols=43  Identities=14%  Similarity=0.195  Sum_probs=39.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 58999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.5e-12  Score=69.90  Aligned_cols=43  Identities=14%  Similarity=0.248  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 59999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.19  E-value=4.3e-12  Score=70.30  Aligned_cols=43  Identities=14%  Similarity=0.129  Sum_probs=39.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 59999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.6e-12  Score=70.24  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=40.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 59999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.9e-12  Score=69.75  Aligned_cols=43  Identities=16%  Similarity=0.353  Sum_probs=39.7

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 58999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.4e-12  Score=70.32  Aligned_cols=43  Identities=14%  Similarity=0.200  Sum_probs=39.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999887

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=7.5e-12  Score=69.03  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=39.0

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccc
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCG   42 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~   42 (203)
                      ..|++++||.|+.|++.|. ...|..| +.|+++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            5799999999999999999 9999999 899999999999996

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.9e-12  Score=69.75  Aligned_cols=43  Identities=12%  Similarity=0.117  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 59999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.2e-12  Score=70.00  Aligned_cols=43  Identities=16%  Similarity=0.191  Sum_probs=39.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 58999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=5.3e-12  Score=70.00  Aligned_cols=43  Identities=14%  Similarity=0.220  Sum_probs=39.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 58999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=9.3e-12  Score=68.94  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=39.7

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.18  E-value=6.1e-12  Score=69.69  Aligned_cols=43  Identities=19%  Similarity=0.215  Sum_probs=39.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 58999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.4e-11  Score=68.24  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=37.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            68999999999999999999 9999999 8999999999974

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=78.97  Aligned_cols=66  Identities=15%  Similarity=0.220  Sum_probs=43.3

Q ss_pred             cccCccCCCcCc-cccHHHH-Hh-hcCCCcccccccccccccccHHHHHHcCCCCccCccChhhhhH-HHHHhhHhccCC
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FA-HCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMER-EILAIHKGENCP   84 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~-h~~~~~~~C~~C~~~f~~~~~~~~~~~~h~~~~C~~C~~~f~~-~~l~~H~~~h~~   84 (203)
                      .|.|+.|++.|. ...|..| +. |.++++..+..|                 ..|.|..|++.|.. ..|..|+++|++
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c-----------------~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC-----------------YWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCC-----------------CCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccce-----------------eccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            355666666665 6666666 44 555544222222                 12778888888876 678888888888


Q ss_pred             CCcccCc
Q 028830           85 QRIVTCD   91 (203)
Q Consensus        85 ~~~~~C~   91 (203)
                      +++|.|+
T Consensus        88 ~k~~~C~   94 (95)
T 2ej4_A           88 EKSGPSS   94 (95)
T ss_dssp             CCCCSSC
T ss_pred             CCCCCCC
Confidence            9999886

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=6e-12  Score=69.73  Aligned_cols=43  Identities=21%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 59999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1e-11  Score=68.77  Aligned_cols=43  Identities=12%  Similarity=0.129  Sum_probs=39.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=6.9e-12  Score=69.49  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=39.3

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 58999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=69.00  Aligned_cols=43  Identities=12%  Similarity=0.093  Sum_probs=39.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHH-H-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQE-V-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~-~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|++ + .+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4788899999999999999999 999999999 7 58999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.3e-11  Score=68.40  Aligned_cols=43  Identities=19%  Similarity=0.173  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3678899999999999999999 9999999999 59999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.6e-12  Score=69.57  Aligned_cols=43  Identities=14%  Similarity=0.179  Sum_probs=39.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.16  E-value=1e-11  Score=68.84  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=39.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|++|++.|. ...|..|+++ .++++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4678899999999999999999 9999999999 58999999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.4e-11  Score=67.27  Aligned_cols=40  Identities=15%  Similarity=0.258  Sum_probs=37.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.16  E-value=1.6e-11  Score=67.97  Aligned_cols=40  Identities=18%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67899999999999999999 9999999 8999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9e-12  Score=69.01  Aligned_cols=43  Identities=14%  Similarity=0.210  Sum_probs=39.3

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5788999999999999999999 9999999999 58999999875

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.5e-12  Score=69.59  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5888999999999999999999 9999999999 58999999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.2e-11  Score=65.94  Aligned_cols=39  Identities=15%  Similarity=0.273  Sum_probs=36.7

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            68999999999999999999 9999999 899999999884

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.3e-11  Score=67.37  Aligned_cols=40  Identities=15%  Similarity=0.268  Sum_probs=37.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.6e-11  Score=67.07  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=37.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ..+|..| +.|.+++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            4 GSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=67.47  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=37.3

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.+++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.6e-11  Score=68.03  Aligned_cols=40  Identities=15%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|+++++|.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            67899999999999999999 9999999 8999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.6e-11  Score=67.17  Aligned_cols=40  Identities=20%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ..+|..| +.|+++++|.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            67899999999999999999 9999999 8999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.6e-11  Score=67.09  Aligned_cols=40  Identities=15%  Similarity=0.251  Sum_probs=37.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|++|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67899999999999999999 9999999 8999999999973

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.15  E-value=2e-11  Score=66.20  Aligned_cols=39  Identities=21%  Similarity=0.292  Sum_probs=36.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|+
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            68999999999999999999 9999999 899999999985

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=74.16  Aligned_cols=54  Identities=20%  Similarity=0.433  Sum_probs=43.7

Q ss_pred             CCccCccChhhhhHHHHHhhHhccCCCCcccCc-cCCCCCC-hhhHHHHHHHh-CCcc
Q 028830           59 APVACSQCSETMEREILAIHKGENCPQRIVTCD-FCEFPLP-AVDLAEHQEVC-GNRT  113 (203)
Q Consensus        59 ~~~~C~~C~~~f~~~~l~~H~~~h~~~~~~~C~-~C~~~f~-~~~l~~H~~~~-~~~~  113 (203)
                      ++|.|..|++.|..+.|..|+++ +++++|.|+ .|++.|. .+.|..|+++| ..++
T Consensus         9 ~~~~C~~C~k~f~~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            9 RTQPCTYCTKEFVFDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CEEECSSSCCEEEHHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCeeccccCCccCHHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            46777777777775578888888 899999999 9999998 99999999884 4443

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.5e-11  Score=67.16  Aligned_cols=40  Identities=20%  Similarity=0.333  Sum_probs=37.3

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.5e-11  Score=67.14  Aligned_cols=40  Identities=15%  Similarity=0.245  Sum_probs=37.2

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.+++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.7e-11  Score=67.09  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=37.3

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.9e-11  Score=66.95  Aligned_cols=40  Identities=13%  Similarity=0.208  Sum_probs=37.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|+++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            68899999999999999999 9999999 8999999999973

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.8e-12  Score=70.16  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=38.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5788899999999999999999 9999999988 58999999887

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.6e-11  Score=67.11  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=37.3

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             ccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.2e-11  Score=66.72  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=37.3

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             ccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=67.69  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=37.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=7.4e-12  Score=69.37  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=38.9

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 58999999887

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.2e-11  Score=67.33  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=37.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.6e-11  Score=67.13  Aligned_cols=40  Identities=20%  Similarity=0.280  Sum_probs=37.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            67899999999999999999 9999999 8999999999974

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.13  E-value=8.2e-12  Score=73.94  Aligned_cols=48  Identities=13%  Similarity=0.233  Sum_probs=42.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHHHhhcCCCcccccccccccccccH
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLHFAHCSRNLERCKVCGDMVPRKYA   50 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H~~h~~~~~~~C~~C~~~f~~~~~   50 (203)
                      +++|++++||.|+.|++.|. ...|.  +.|.++++|.|+.|++.|.....
T Consensus         6 ~~~H~~~k~~~C~~C~k~F~~~~~l~--~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            6 ERDSTNRASFKCPVCSSTFTDLEANQ--LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHHHH--HEETTTTEEBCSSSCCBCEECTT
T ss_pred             HHHcCCCCCccCCCCCchhccHHHhH--hhcCCCCCEECCCCCCccccCcc
Confidence            57899999999999999998 77776  78999999999999999987743

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.4e-11  Score=67.21  Aligned_cols=40  Identities=15%  Similarity=0.253  Sum_probs=37.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|++
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.5e-11  Score=67.12  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.+++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.3e-11  Score=67.36  Aligned_cols=43  Identities=14%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 59999999875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.7e-11  Score=67.03  Aligned_cols=40  Identities=18%  Similarity=0.215  Sum_probs=37.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            68899999999999999999 9999999 8999999999973

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.6e-11  Score=67.09  Aligned_cols=40  Identities=18%  Similarity=0.244  Sum_probs=37.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|++++||.|++
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.7e-11  Score=67.01  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=37.3

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      +++|++++||.|+.|++.|. ..+|..| +.|.+++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.3e-11  Score=65.96  Aligned_cols=39  Identities=15%  Similarity=0.281  Sum_probs=36.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            4 GSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            57899999999999999999 9999999 899999999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.9e-11  Score=66.90  Aligned_cols=40  Identities=20%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             ccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999973

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.8e-11  Score=66.91  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=37.3

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|+++++|.|+.|++.|. ...|..| +.|.++++|.|++
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             ccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.11  E-value=2.2e-11  Score=68.14  Aligned_cols=41  Identities=10%  Similarity=0.237  Sum_probs=38.3

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccccc
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGD   43 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~   43 (203)
                      .|.++++|.|++|++.|. ...|..| +.|+++++|.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            578899999999999999 9999999 8999999999999985

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=4.1e-11  Score=64.91  Aligned_cols=38  Identities=13%  Similarity=0.202  Sum_probs=35.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERC   38 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C   38 (203)
                      +++|++++||.|+.|++.|. .+.|..| +.|.++++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            57899999999999999999 9999999 89999999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5e-11  Score=64.51  Aligned_cols=40  Identities=13%  Similarity=0.208  Sum_probs=36.5

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      |+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            667899999999999999999 9999999999 589999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=5.4e-11  Score=64.87  Aligned_cols=40  Identities=15%  Similarity=0.260  Sum_probs=37.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      .++|+++++|.|+.|++.|. ...|..| +.|+++++|.|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            2 SSGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            36899999999999999999 9999999 8999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3e-11  Score=65.40  Aligned_cols=38  Identities=16%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERC   38 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C   38 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.+++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            57899999999999999999 9999999 89999999987

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.1e-11  Score=65.40  Aligned_cols=38  Identities=13%  Similarity=0.281  Sum_probs=36.1

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERC   38 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C   38 (203)
                      +++|++++||.|+.|++.|. ...|..| +.|.++++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            57899999999999999999 9999999 89999999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.3e-11  Score=66.59  Aligned_cols=39  Identities=13%  Similarity=0.250  Sum_probs=36.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             ccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            67899999999999999999 9999999 899999999985

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=2.7e-11  Score=69.58  Aligned_cols=45  Identities=16%  Similarity=0.215  Sum_probs=37.3

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHH-Hh-CCcceecccchhhcch
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQE-VC-GNRTELCHLCNRYIRL  125 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~-~~-~~~~~~C~~C~~~f~~  125 (203)
                      .+.++++|.|++|++.|. ...|.+|++ +| ++++|.|+.|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            466788899999999998 888999987 54 8888999999888863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.4e-11  Score=66.63  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=37.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcC-CCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCS-RNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~-~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.+ +++|.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            68899999999999999999 9999999 89999 99999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.4e-11  Score=65.87  Aligned_cols=39  Identities=21%  Similarity=0.329  Sum_probs=36.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|++++||.|+.|++.|. ..+|..| +.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             SSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             ccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            57899999999999999999 9999999 899999999985

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=4.3e-11  Score=65.54  Aligned_cols=39  Identities=21%  Similarity=0.312  Sum_probs=36.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             SCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            57899999999999999999 9999999 899999999884

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=4.3e-11  Score=65.53  Aligned_cols=39  Identities=13%  Similarity=0.208  Sum_probs=36.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            57899999999999999999 9999999 899999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.9e-11  Score=66.93  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             cccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999974

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.09  E-value=5.5e-11  Score=72.32  Aligned_cols=56  Identities=27%  Similarity=0.418  Sum_probs=49.5

Q ss_pred             ccCCCCcccCcc--CCCcCc-cccHHHH-HhhcCCCcccccc--cccccccccHHHHHHcCC
Q 028830            3 MTSDETTKICSH--CDRAIP-SSNIDLH-FAHCSRNLERCKV--CGDMVPRKYAEEHFLNTH   58 (203)
Q Consensus         3 ~h~~~k~y~C~~--C~~~f~-~~~l~~H-~~h~~~~~~~C~~--C~~~f~~~~~~~~~~~~h   58 (203)
                      .+...++|.|..  |++.|. ...|..| +.|.++++|.|++  |++.|.....|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            456788999988  999999 9999999 8999999999965  999999998888887765

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=6.1e-11  Score=64.94  Aligned_cols=39  Identities=21%  Similarity=0.236  Sum_probs=36.6

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      +++|+++++|.|+.|++.|. ...|..| +.|+++++|.|+
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            57899999999999999999 9999999 899999999985

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.8e-11  Score=66.00  Aligned_cols=42  Identities=12%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.08  E-value=4.8e-11  Score=64.58  Aligned_cols=38  Identities=13%  Similarity=0.356  Sum_probs=36.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERC   38 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C   38 (203)
                      +++|++++||.|+.|++.|. ..+|..| +.|++++||.|
T Consensus         3 ~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            57899999999999999999 9999999 89999999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.08  E-value=4.2e-11  Score=66.27  Aligned_cols=42  Identities=17%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. ...|..|+++ .+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4788999999999999999999 9999999999 5899999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.08  E-value=3.9e-11  Score=64.98  Aligned_cols=40  Identities=15%  Similarity=0.216  Sum_probs=36.1

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      |+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            567889999999999999999 9999999999 589999985

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=7.6e-11  Score=65.18  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=38.2

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ +++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5999999963

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.08  E-value=1.1e-11  Score=73.46  Aligned_cols=48  Identities=10%  Similarity=0.210  Sum_probs=41.1

Q ss_pred             HHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcch
Q 028830           75 LAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIRL  125 (203)
Q Consensus        75 l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~~  125 (203)
                      |..|+++|.++++|.|+.|++.|. .+.|.   ++ .++++|.|+.||+.|..
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~   51 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEE   51 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEE
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCcccc
Confidence            457888999999999999999998 77776   55 48999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.7e-11  Score=65.66  Aligned_cols=42  Identities=14%  Similarity=0.176  Sum_probs=38.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 5999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4.8e-11  Score=66.01  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4788999999999999999999 9999999999 5999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.1e-11  Score=65.89  Aligned_cols=42  Identities=19%  Similarity=0.266  Sum_probs=38.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 5899999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.7e-11  Score=66.03  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=36.7

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            4 GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            57899999999999999999 9999999 899999999996

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.9e-11  Score=65.91  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=38.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 5999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.9e-11  Score=65.96  Aligned_cols=42  Identities=17%  Similarity=0.300  Sum_probs=38.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 5999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.4e-11  Score=66.11  Aligned_cols=40  Identities=18%  Similarity=0.310  Sum_probs=37.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             ccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57899999999999999999 9999999 8999999999973

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.6e-11  Score=65.72  Aligned_cols=42  Identities=14%  Similarity=0.240  Sum_probs=38.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5899999964

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.8e-11  Score=65.64  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=38.2

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. ...|..|+++ +++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5999999973

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.5e-11  Score=65.78  Aligned_cols=42  Identities=17%  Similarity=0.259  Sum_probs=38.2

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 5899999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=8.3e-11  Score=65.03  Aligned_cols=42  Identities=14%  Similarity=0.328  Sum_probs=38.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.7e-11  Score=65.40  Aligned_cols=41  Identities=10%  Similarity=0.096  Sum_probs=37.7

Q ss_pred             HhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           79 KGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        79 ~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      +++|.++++|.|++|++.|. ...|..|+++ +++++|.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            46788999999999999999 9999999999 59999999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.6e-11  Score=65.43  Aligned_cols=42  Identities=19%  Similarity=0.320  Sum_probs=38.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5899999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.8e-11  Score=65.60  Aligned_cols=42  Identities=17%  Similarity=0.270  Sum_probs=38.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4788999999999999999999 9999999999 5999999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.7e-11  Score=65.96  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             CcccCCCCcccCc--cCCCcCc-cccHHHH-HhhcCCCccccccc
Q 028830            1 MAMTSDETTKICS--HCDRAIP-SSNIDLH-FAHCSRNLERCKVC   41 (203)
Q Consensus         1 ~~~h~~~k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C   41 (203)
                      .++|++++||.|.  .|++.|. ...|..| +.|+++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3789999999998  8999999 9999999 89999999999987

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.3e-11  Score=66.23  Aligned_cols=42  Identities=17%  Similarity=0.233  Sum_probs=38.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6e-11  Score=64.87  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=37.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5788899999999999999999 9999999999 589999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.4e-11  Score=65.48  Aligned_cols=42  Identities=14%  Similarity=0.241  Sum_probs=38.2

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 5899999963

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.05  E-value=7.4e-11  Score=64.91  Aligned_cols=41  Identities=10%  Similarity=0.184  Sum_probs=36.9

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccch
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCN  120 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~  120 (203)
                      ..|+++++|.|++|++.|. .+.|..|+++ +++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            3578899999999999999 9999999999 599999999986

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.3e-11  Score=64.78  Aligned_cols=41  Identities=15%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5788899999999999999999 9999999999 599999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.5e-11  Score=65.46  Aligned_cols=42  Identities=17%  Similarity=0.195  Sum_probs=38.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            5888999999999999999999 9999999999 5999999963

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.6e-11  Score=65.67  Aligned_cols=42  Identities=14%  Similarity=0.227  Sum_probs=38.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5899999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=8.8e-11  Score=64.91  Aligned_cols=42  Identities=14%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4788999999999999999999 9999999999 5999999963

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=8.9e-11  Score=63.20  Aligned_cols=37  Identities=16%  Similarity=0.341  Sum_probs=35.2

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccc
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERC   38 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C   38 (203)
                      ++|++++||.|+.|++.|. ...|..| +.|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            6899999999999999999 9999999 89999999987

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.1e-11  Score=65.56  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=38.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5899999963

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=5.8e-11  Score=65.65  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      ++++|.++++|.|++|++.|. ...|..|+++ +++++|.|+.|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            356788899999999999999 9999999998 58999999887

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=5.8e-11  Score=65.34  Aligned_cols=40  Identities=15%  Similarity=0.270  Sum_probs=36.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      +++|+++++|.|+.|++.|. ...|..| +.|.++++|.|+.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            46899999999999999999 9999999 8999999999973

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=6.5e-11  Score=64.79  Aligned_cols=41  Identities=10%  Similarity=0.163  Sum_probs=37.3

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            4788899999999999999999 9999999999 589999984

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.3e-11  Score=65.28  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=37.5

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|++|++.|. ...|.+|+++ +++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            3678899999999999999999 9999999999 5899999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.5e-11  Score=65.70  Aligned_cols=42  Identities=12%  Similarity=0.218  Sum_probs=37.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            4788899999999999999999 9999999999 5899999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=6.2e-11  Score=65.51  Aligned_cols=42  Identities=14%  Similarity=0.276  Sum_probs=38.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. ...|..|+++ ++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5788899999999999999999 9999999999 5899999973

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.3e-11  Score=65.14  Aligned_cols=39  Identities=15%  Similarity=0.264  Sum_probs=36.5

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++|++++||.|+.|++.|. ...|..| +.|.++++|.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            4 GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            57899999999999999999 9999999 899999999884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.5e-11  Score=65.77  Aligned_cols=42  Identities=12%  Similarity=0.186  Sum_probs=38.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ +++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5899999963

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.3e-10  Score=63.64  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=35.8

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERC   38 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C   38 (203)
                      |++|++++||.|++|++.|. ...|..| +.|+++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            4 GSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            67899999999999999999 9999999 89999999977

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=6.3e-11  Score=64.81  Aligned_cols=41  Identities=15%  Similarity=0.168  Sum_probs=37.1

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ .++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4788899999999999999999 9999999999 589999985

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.01  E-value=1.2e-10  Score=62.90  Aligned_cols=39  Identities=18%  Similarity=0.205  Sum_probs=35.7

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      |+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            677899999999999999999 9999999999 59999987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=6.2e-11  Score=64.14  Aligned_cols=40  Identities=20%  Similarity=0.268  Sum_probs=35.7

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3778899999999999999999 9999999999 58999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.01  E-value=2e-10  Score=69.78  Aligned_cols=53  Identities=21%  Similarity=0.367  Sum_probs=42.3

Q ss_pred             cCCCCcccCcc--CCCCCC-hhhHHHHHHH-hCCcceeccc--chhhcc-hhHHHHHHHh
Q 028830           82 NCPQRIVTCDF--CEFPLP-AVDLAEHQEV-CGNRTELCHL--CNRYIR-LRERYNHESR  134 (203)
Q Consensus        82 h~~~~~~~C~~--C~~~f~-~~~l~~H~~~-~~~~~~~C~~--C~~~f~-~~~l~~H~~~  134 (203)
                      ....++|.|..  |++.|. ...|..|+++ +++++|.|+.  |++.|. ...|..|++.
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            44567888888  888888 8888888888 5888888854  888887 4688888754

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2.1e-10  Score=62.75  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=36.7

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      |+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            677899999999999999999 9999999999 599999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.2e-10  Score=64.30  Aligned_cols=42  Identities=19%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|++|++.|. ...|..|+++ +++++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3678899999999999999999 9999999999 5899999963

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=9.1e-11  Score=63.47  Aligned_cols=39  Identities=15%  Similarity=0.305  Sum_probs=36.2

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      |+++|.++++|.|+.|++.|. .+.|..|+++ .+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            678899999999999999999 9999999999 59999987

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.8e-11  Score=65.11  Aligned_cols=41  Identities=10%  Similarity=0.138  Sum_probs=38.0

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .|+++|.++++|.|++|++.|. ...|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5788999999999999999999 9999999999 589999996

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=9.8e-11  Score=63.38  Aligned_cols=39  Identities=15%  Similarity=0.342  Sum_probs=35.1

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      |+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            677889999999999999999 9999999999 58899887

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1e-10  Score=64.64  Aligned_cols=42  Identities=14%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4788899999999999999999 9999999999 5899999863

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1e-10  Score=63.99  Aligned_cols=41  Identities=12%  Similarity=0.226  Sum_probs=36.9

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5788899999999999999999 9999999999 589999884

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.1e-10  Score=64.52  Aligned_cols=42  Identities=12%  Similarity=0.241  Sum_probs=37.3

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hC-Ccceeccc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CG-NRTELCHL  118 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~-~~~~~C~~  118 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ .+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4778899999999999999999 9999999999 57 89999863

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=1e-10  Score=65.29  Aligned_cols=40  Identities=15%  Similarity=0.292  Sum_probs=28.8

Q ss_pred             cCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchh
Q 028830           82 NCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNR  121 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~  121 (203)
                      +.++++|.|++|++.|. ...|..|+++ +++++|.|+.|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            45667777777777777 7777777777 4777777777764

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.8e-10  Score=62.22  Aligned_cols=41  Identities=12%  Similarity=0.145  Sum_probs=36.8

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .|+++|.++++|.|++|++.|. .+.|..|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            4788899999999999999999 9999999999 589999873

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=5.8e-10  Score=61.54  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=36.4

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      ++++|.++++|.|+.|++.|. ...|..|+++ ++++||.|+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            356788999999999999999 9999999999 5999999963

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1e-10  Score=63.94  Aligned_cols=41  Identities=12%  Similarity=0.234  Sum_probs=36.7

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      .|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4788899999999999999999 9999999999 589999884

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=8.2e-10  Score=60.02  Aligned_cols=39  Identities=10%  Similarity=0.213  Sum_probs=34.8

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      ++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            4578899999999999999 9999999999 5999999964

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.6e-10  Score=62.89  Aligned_cols=42  Identities=12%  Similarity=0.249  Sum_probs=37.3

Q ss_pred             hHhccCCCCcccCc--cCCCCCC-hhhHHHHHHH-hCCcceecccc
Q 028830           78 HKGENCPQRIVTCD--FCEFPLP-AVDLAEHQEV-CGNRTELCHLC  119 (203)
Q Consensus        78 H~~~h~~~~~~~C~--~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C  119 (203)
                      |.++|.++++|.|.  .|++.|. .+.|..|+++ .+++||.|+.|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778899999998  8999999 9999999999 58999999887

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.90  E-value=9.1e-11  Score=67.28  Aligned_cols=42  Identities=14%  Similarity=0.197  Sum_probs=31.9

Q ss_pred             HHHHhhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcce
Q 028830           73 EILAIHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTE  114 (203)
Q Consensus        73 ~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~  114 (203)
                      ..|..|+++|.++++|.|+.|++.|. .+.|..|+++ ++++||
T Consensus        10 ~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A           10 PGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             SCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            45667777777888888888888887 7788888877 477766

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=5.9e-10  Score=58.37  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCc
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNL   35 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~   35 (203)
                      |++|++++||.|+.|++.|. ..+|..| +.|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            68999999999999999999 9999999 89998764

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.5e-10  Score=62.11  Aligned_cols=41  Identities=17%  Similarity=0.319  Sum_probs=34.7

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceeccc
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHL  118 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~  118 (203)
                      +.++|.++++|.|++|++.|. ...|..|+++ +++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            346788889999999999998 8999999988 5889999863

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.1e-09  Score=58.72  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      ++|.++++|.|+.|++.|. .+.|..|+++ ++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4578889999999999998 8999999888 58888887

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.81  E-value=1.7e-09  Score=57.36  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             cCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccc
Q 028830            4 TSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCK   39 (203)
Q Consensus         4 h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~   39 (203)
                      |++++||.|+.|++.|. .+.|..| +.|+++++|.+.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            68899999999999998 9999999 899999998763

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=1.5e-09  Score=66.64  Aligned_cols=44  Identities=25%  Similarity=0.498  Sum_probs=23.8

Q ss_pred             ccCCCCcccCccCCCcCccccHHHHHhhcCCCcccccccccccc
Q 028830            3 MTSDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVP   46 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~~~~l~~H~~h~~~~~~~C~~C~~~f~   46 (203)
                      +|.+++||.|..|++.|....|..|..|++++++.|+.|++.|.
T Consensus        11 ~~c~~r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~   54 (75)
T 2d9k_A           11 TECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVL   54 (75)
T ss_dssp             CCCCCCCEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEE
T ss_pred             ccCCCcccCCcccChHhhHHHHHHHHhHcCCCceEcccCCCcCc
Confidence            34555555555555555555555554455555555555555544

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.71  E-value=2.4e-09  Score=61.22  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=16.4

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcc
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLE   36 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~   36 (203)
                      +|++++||.|+.|++.|. .+.|..| +.|++++||
T Consensus        18 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A           18 RSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             HHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             hcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            344444555555555554 4445555 444444443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=7.6e-09  Score=61.39  Aligned_cols=38  Identities=26%  Similarity=0.196  Sum_probs=33.4

Q ss_pred             ccCCCCcccCcc--CCCcCc-cccHHHH-H-hhcCCCcccccc
Q 028830            3 MTSDETTKICSH--CDRAIP-SSNIDLH-F-AHCSRNLERCKV   40 (203)
Q Consensus         3 ~h~~~k~y~C~~--C~~~f~-~~~l~~H-~-~h~~~~~~~C~~   40 (203)
                      ..+|+|||+|++  |++.|. .++|..| + .|++++||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            357899999965  999999 9999999 4 799999998865

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.70  E-value=8.4e-09  Score=53.80  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=28.0

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      +++|++++||.|+.|++.|. ...|..| +.|.++
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            57889999999999999998 8899999 777653

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.69  E-value=6.6e-09  Score=53.41  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=29.6

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCc
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNL   35 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~   35 (203)
                      +|++++||.|+.|++.|. ...|..| +.|.+++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            588999999999999998 9999999 88988764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.69  E-value=7.8e-09  Score=53.21  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=29.5

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCc
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNL   35 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~   35 (203)
                      +|++++||.|+.|++.|. ...|..| +.|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            588999999999999998 9999999 88988764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=2.8e-09  Score=67.45  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=35.5

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCccccccccc
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGD   43 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~   43 (203)
                      ++|++++||.|+.|++.|. ...|..| +.|++++||.|..|..
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            5688899999999999998 8889999 8898888998876653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.5e-08  Score=52.82  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             CcccCCCCcccCccCCCcCc-c-ccHHHH-HhhcCCC
Q 028830            1 MAMTSDETTKICSHCDRAIP-S-SNIDLH-FAHCSRN   34 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~-~~l~~H-~~h~~~~   34 (203)
                      .++|++++||.|+.|++.|. . ..|..| +.|++++
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            1 GSSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            37899999999999999998 8 899999 8888763

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.61  E-value=1.4e-08  Score=53.63  Aligned_cols=35  Identities=34%  Similarity=0.568  Sum_probs=26.8

Q ss_pred             cCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceec
Q 028830           82 NCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELC  116 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C  116 (203)
                      |.++++|.|+.|++.|. .+.|..|+++ .++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            45678888888888888 8888888888 47777765

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=3.7e-08  Score=58.44  Aligned_cols=37  Identities=19%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             cCCCCcccCcc--CCCCCC-hhhHHHHH-HHh-CCcceeccc
Q 028830           82 NCPQRIVTCDF--CEFPLP-AVDLAEHQ-EVC-GNRTELCHL  118 (203)
Q Consensus        82 h~~~~~~~C~~--C~~~f~-~~~l~~H~-~~~-~~~~~~C~~  118 (203)
                      .++++||+|.+  |++.|. .++|.+|+ ++| +++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            56889999975  999998 99999997 455 889998854

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.59  E-value=2.6e-08  Score=51.85  Aligned_cols=32  Identities=16%  Similarity=0.240  Sum_probs=27.1

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      |+++|.++++|.|+.|++.|. .+.|..|+++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            677788888999999999988 88888888874

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.7e-08  Score=52.68  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-H-hhcCC
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-F-AHCSR   33 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~-~h~~~   33 (203)
                      |++|++++||.|+.|++.|. ...|..| + .|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            68999999999999999998 9999999 4 67653

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.3e-08  Score=52.08  Aligned_cols=34  Identities=15%  Similarity=0.280  Sum_probs=26.2

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcc
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRT  113 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~  113 (203)
                      ++|.++++|.|+.|++.|. .+.|..|+++ ++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4577788888888888888 8888888887 46553

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.56  E-value=2.5e-08  Score=52.25  Aligned_cols=33  Identities=18%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             cCCCCcccCc--cCCCcCc-cccHHHH-HhhcCCCcc
Q 028830            4 TSDETTKICS--HCDRAIP-SSNIDLH-FAHCSRNLE   36 (203)
Q Consensus         4 h~~~k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~~~   36 (203)
                      |++++||.|+  .|++.|. ..+|..| +.|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            6899999999  6999999 9999999 899999887

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=2.6e-08  Score=51.53  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=28.6

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      +.|++++||.|+.|++.|. ...|..| +.|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            5788999999999999998 9999999 7887653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=2.9e-08  Score=51.34  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=28.9

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      +.|++++||.|+.|++.|. ...|..| +.|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4789999999999999998 9999999 7887653

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.54  E-value=4.5e-08  Score=49.68  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCCccc
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRNLER   37 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~   37 (203)
                      +||.|+.|++.|. .+.|..| ..|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5899999999999 9999999 8999999885

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.53  E-value=1.6e-08  Score=52.57  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=20.7

Q ss_pred             cCCCCcccCccCCCcCc-cccHHHHH
Q 028830            4 TSDETTKICSHCDRAIP-SSNIDLHF   28 (203)
Q Consensus         4 h~~~k~y~C~~C~~~f~-~~~l~~H~   28 (203)
                      +.|||||.|++|++.|. .++|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            56788888888888888 88888885

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.52  E-value=5.5e-08  Score=49.80  Aligned_cols=31  Identities=16%  Similarity=0.286  Sum_probs=23.2

Q ss_pred             cCCCCcccCccCCCCCC-hhhHHHHHHH-hCCc
Q 028830           82 NCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNR  112 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~  112 (203)
                      |.++++|.|+.|++.|. .+.|..|+++ ++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            56777888888888887 7788888777 4554

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=3.9e-08  Score=51.79  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=27.5

Q ss_pred             ccCCCCcccCcc--CCCcCc-cccHHHH-HhhcCC
Q 028830            3 MTSDETTKICSH--CDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         3 ~h~~~k~y~C~~--C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      .+++++||+|+.  |++.|. .++|..| +.|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            478899999986  999998 9999999 899875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=1.3e-08  Score=64.35  Aligned_cols=57  Identities=12%  Similarity=0.276  Sum_probs=45.2

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcchhHHHHHHHhhc
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIRLRERYNHESRCT  136 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~~~~l~~H~~~~~  136 (203)
                      .|..+|.++++|.|+.|++.|. .+.|..|+++ .+++||.|..|.   ....|..|.+.+.
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~---~~~~~~~~~~~~~   73 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE---RRKQLLSKQKYAD   73 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS---CCCCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh---hHHHHHhhhcccc
Confidence            3456789999999999999999 9999999999 589999998764   2445555655443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=4.7e-08  Score=50.45  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      .+|++++||.|+.|++.|. ...|..| +.|.+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4789999999999999998 9999999 8888763

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=7.3e-08  Score=49.68  Aligned_cols=33  Identities=18%  Similarity=0.478  Sum_probs=29.1

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      ..|+++++|.|+.|++.|. ...|..| +.|++++
T Consensus         2 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            3688999999999999998 9999999 8888763

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.49  E-value=3.6e-08  Score=51.22  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=24.7

Q ss_pred             cCCCCcccCccCCCCCC-hhhHHHHHHHhCCcceeccc
Q 028830           82 NCPQRIVTCDFCEFPLP-AVDLAEHQEVCGNRTELCHL  118 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~~C~~  118 (203)
                      +.+++||.|+.|++.|. .++|.+|+      ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC------CeECcC
Confidence            45788999999999998 88899987      566643

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.47  E-value=7.6e-08  Score=49.32  Aligned_cols=31  Identities=19%  Similarity=0.364  Sum_probs=22.4

Q ss_pred             cCCCCcccCccCCCCCC-hhhHHHHHHH-hCCc
Q 028830           82 NCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGNR  112 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~  112 (203)
                      |.++++|.|+.|++.|. .+.|..|+++ ++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            56677777777777777 7777777777 3544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.46  E-value=1.4e-07  Score=47.83  Aligned_cols=30  Identities=17%  Similarity=0.121  Sum_probs=22.5

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH-hCCccee
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV-CGNRTEL  115 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~  115 (203)
                      +||.|++|++.|. .+.|..|+++ .++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            4677888888887 7788888877 4777764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.44  E-value=5.1e-08  Score=54.14  Aligned_cols=33  Identities=12%  Similarity=0.321  Sum_probs=26.7

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-H-hhcCCCc
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-F-AHCSRNL   35 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~-~h~~~~~   35 (203)
                      +|++++||.|..|++.|. ..+|..| + .|.++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            589999999999999998 9999999 7 8887643

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.1e-07  Score=48.98  Aligned_cols=32  Identities=16%  Similarity=0.359  Sum_probs=28.0

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      .|++++||.|+.|++.|. ...|..| +.|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            578899999999999998 9999999 8888753

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.34  E-value=1.8e-07  Score=51.59  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             cccCCCCcccCc--cCCCcCc-cccHHHH-HhhcCCC
Q 028830            2 AMTSDETTKICS--HCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         2 ~~h~~~k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      ..|++++||.|+  .|++.|. .++|..| +.|++++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            457788888884  6888887 8888888 7787653

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.33  E-value=2.7e-07  Score=48.14  Aligned_cols=33  Identities=15%  Similarity=0.091  Sum_probs=26.6

Q ss_pred             cCCCCcccCc--cCCCCCC-hhhHHHHHHH-hCCcce
Q 028830           82 NCPQRIVTCD--FCEFPLP-AVDLAEHQEV-CGNRTE  114 (203)
Q Consensus        82 h~~~~~~~C~--~C~~~f~-~~~l~~H~~~-~~~~~~  114 (203)
                      |.++++|.|.  .|++.|. .+.|.+|+++ .++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4677888888  5998888 8888888888 477776

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.33  E-value=2e-07  Score=48.47  Aligned_cols=32  Identities=19%  Similarity=0.396  Sum_probs=28.1

Q ss_pred             ccCCCCcccCc--cCCCcCc-cccHHHH-HhhcCCC
Q 028830            3 MTSDETTKICS--HCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         3 ~h~~~k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      .|++++||.|.  .|++.|. .+.|..| +.|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            58899999998  5999998 9999999 8898764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.30  E-value=4.4e-08  Score=49.32  Aligned_cols=29  Identities=14%  Similarity=0.146  Sum_probs=26.4

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCCcc
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRNLE   36 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~   36 (203)
                      +||.|+.|++.|. .++|..| +.|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5899999999998 9999999 899998886

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=2e-07  Score=48.44  Aligned_cols=30  Identities=13%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHH-HHHh
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEH-QEVC  109 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H-~~~~  109 (203)
                      ++|.+++||.|+.|++.|. .+.|..| +++|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            3466677777777777776 7777777 5554

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=3.6e-07  Score=47.35  Aligned_cols=32  Identities=25%  Similarity=0.525  Sum_probs=24.8

Q ss_pred             hccCCCCcccCccCCCCCC-h-hhHHHHHHHh-CC
Q 028830           80 GENCPQRIVTCDFCEFPLP-A-VDLAEHQEVC-GN  111 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~-~~l~~H~~~~-~~  111 (203)
                      ++|.++++|.|+.|++.|. . +.|..|+++| ++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            3567788888888888888 7 8888888873 54

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=4.7e-07  Score=46.48  Aligned_cols=29  Identities=14%  Similarity=0.326  Sum_probs=22.2

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      +|.++++|.|+.|++.|. ...|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            466777888888888887 77888887773

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=8e-07  Score=45.57  Aligned_cols=31  Identities=16%  Similarity=0.355  Sum_probs=24.7

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHHh-CC
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEVC-GN  111 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~-~~  111 (203)
                      .|.++++|.|+.|++.|. ...|..|+++| ++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            467788888888888888 88888888874 44

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=4.6e-07  Score=46.59  Aligned_cols=29  Identities=17%  Similarity=0.457  Sum_probs=21.7

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      .|.++++|.|..|++.|. .+.|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            466777788888888877 77777787773

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=5.5e-07  Score=47.28  Aligned_cols=28  Identities=21%  Similarity=0.564  Sum_probs=18.8

Q ss_pred             cCCCCcccCcc--CCCCCC-hhhHHHHHHHh
Q 028830           82 NCPQRIVTCDF--CEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        82 h~~~~~~~C~~--C~~~f~-~~~l~~H~~~~  109 (203)
                      +.+++||+|++  |++.|. .+.|.+|+++|
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~H   34 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVH   34 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            45667777765  777776 77777777663

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.26  E-value=1.7e-07  Score=47.06  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             CCccCccChhhhhH-HHHHhhHhccCCCCcc
Q 028830           59 APVACSQCSETMER-EILAIHKGENCPQRIV   88 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~   88 (203)
                      ++|.|..|++.|.. +.|..|+++|+++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            36778888888877 6778888888877765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=4.7e-07  Score=46.56  Aligned_cols=29  Identities=21%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      .|.++++|.|..|++.|. .+.|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            356667777777777777 77777777663

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=1.3e-06  Score=51.77  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=13.3

Q ss_pred             Ccceecccchhhcc-hhHHHHHHHhhcC
Q 028830          111 NRTELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus       111 ~~~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      ++||.|..|++.|. ...|..|++.|..
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            44555555555554 2455555544443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.18  E-value=6.1e-07  Score=49.61  Aligned_cols=24  Identities=13%  Similarity=0.343  Sum_probs=14.4

Q ss_pred             CCcceecccchhhcc-hhHHHHHHH
Q 028830          110 GNRTELCHLCNRYIR-LRERYNHES  133 (203)
Q Consensus       110 ~~~~~~C~~C~~~f~-~~~l~~H~~  133 (203)
                      ++++|.|..|++.|. ...|..|++
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhh
Confidence            455666666666665 346666665

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.17  E-value=1e-06  Score=52.29  Aligned_cols=39  Identities=10%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccc
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCG   42 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~   42 (203)
                      .+.+++||.|.+|++.|. ...|..| +.|+++. ..+..++
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            467899999999999998 9999999 8998863 3444444

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=1.2e-06  Score=44.97  Aligned_cols=28  Identities=21%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             cCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           82 NCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      |.++++|.|+.|++.|. ...|..|+++|
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            45667777777777777 77777777763

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.12  E-value=9e-07  Score=43.13  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      ++||.|+.|++.|. ...|..| +.|.++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            47888999999988 8888888 778765

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.12  E-value=2.3e-06  Score=60.70  Aligned_cols=130  Identities=18%  Similarity=0.362  Sum_probs=91.1

Q ss_pred             CcccCccCCCcCc-cccHH-HHH-------hhcCCCccccccccccccccc-----HHHHHHcCCCCccC--ccChhhhh
Q 028830            8 TTKICSHCDRAIP-SSNID-LHF-------AHCSRNLERCKVCGDMVPRKY-----AEEHFLNTHAPVAC--SQCSETME   71 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~-~H~-------~h~~~~~~~C~~C~~~f~~~~-----~~~~~~~~h~~~~C--~~C~~~f~   71 (203)
                      ..|.|++|...|. ...+. .|.       .........|+.|...+....     .+..... -....|  ..|+..+.
T Consensus        17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~-~l~v~C~n~GC~~~~~   95 (170)
T 3hcs_A           17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL-SLMVKCPNEGCLHKME   95 (170)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH-TSEEECCSTTCCCEEE
T ss_pred             CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHh-hcccCCCCCCCCceec
Confidence            3578888888775 32211 110       000111248999998877641     1111111 135566  57888888


Q ss_pred             HHHHHhhHhccCCCCcccCccCCCCCChhhHHHHHHH-hCCcceecccchhhcchhHHHHHHHhhcCCC
Q 028830           72 REILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEV-CGNRTELCHLCNRYIRLRERYNHESRCTGVP  139 (203)
Q Consensus        72 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~l~~H~~~-~~~~~~~C~~C~~~f~~~~l~~H~~~~~~~~  139 (203)
                      ...+..|+ ..+..+++.|+.|+..+....|..|... +..++..|+.|+..|....|..|...+.++.
T Consensus        96 ~~~l~~H~-~~C~~~~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A           96 LRHLEDHQ-AHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLAL  163 (170)
T ss_dssp             GGGHHHHH-TTCTTSEEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEGGGHHHHHTTCCC--
T ss_pred             HhHHHHHH-hcCCceeeECCCCChHHHHHHHHHHhhhhCCCCCeECCCCCCccCHHHHHhHHHhCcChh
Confidence            88899997 4678889999999998888899999987 8999999999999999999999998766543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.10  E-value=1.2e-06  Score=42.48  Aligned_cols=26  Identities=23%  Similarity=0.539  Sum_probs=21.7

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      +||.|+.|++.|. ...|..| +.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5788999999988 8888888 778765

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.10  E-value=1.9e-06  Score=42.82  Aligned_cols=28  Identities=21%  Similarity=0.471  Sum_probs=23.3

Q ss_pred             CCcccCc--cCCCcCc-cccHHHH-HhhcCCC
Q 028830            7 ETTKICS--HCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         7 ~k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      ++||.|+  .|++.|. ...|..| +.|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            5789998  8999998 8899999 7887753

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.09  E-value=1.9e-06  Score=41.51  Aligned_cols=27  Identities=26%  Similarity=0.597  Sum_probs=22.8

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      +||.|+.|++.|. ...|..| +.|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            5899999999998 8999999 7887653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.08  E-value=1.8e-06  Score=41.74  Aligned_cols=26  Identities=23%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      +||.|+.|++.|. ...|..| +.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            5789999999998 8899999 788765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.08  E-value=2.2e-06  Score=41.68  Aligned_cols=27  Identities=30%  Similarity=0.440  Sum_probs=23.2

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      +||.|+.|++.|. .+.|..| +.|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            5799999999998 8999999 7887765

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.07  E-value=6.5e-07  Score=49.22  Aligned_cols=35  Identities=11%  Similarity=0.229  Sum_probs=26.8

Q ss_pred             hhHhccCCCCcccCc--cCCCCCC-hhhHHHHHHHh-CC
Q 028830           77 IHKGENCPQRIVTCD--FCEFPLP-AVDLAEHQEVC-GN  111 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~--~C~~~f~-~~~l~~H~~~~-~~  111 (203)
                      .|...|.++++|.|+  .|++.|. .+.|..|+++| ++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            445667888888885  6888888 88888888884 54

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.04  E-value=2e-06  Score=40.99  Aligned_cols=23  Identities=13%  Similarity=0.378  Sum_probs=12.1

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      ++|.|+.|++.|. .+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            4555555555555 5555555544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.03  E-value=3e-06  Score=43.78  Aligned_cols=30  Identities=17%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             cCCCCcccCcc--CCCCCC-hhhHHHHHHHh-CC
Q 028830           82 NCPQRIVTCDF--CEFPLP-AVDLAEHQEVC-GN  111 (203)
Q Consensus        82 h~~~~~~~C~~--C~~~f~-~~~l~~H~~~~-~~  111 (203)
                      |.++++|.|.+  |++.|. .+.|..|+++| ++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56677888874  888887 78888887773 54

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.28  E-value=6.9e-07  Score=43.67  Aligned_cols=27  Identities=22%  Similarity=0.537  Sum_probs=22.0

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      ++||.|+.|++.|. ...|..| +.|.++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            46888999999888 8888888 777664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.01  E-value=1.5e-06  Score=41.42  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=17.7

Q ss_pred             CCcccCccCCCcCc-cccHHHH-Hhh
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h   30 (203)
                      ++||.|+.|++.|. .+.|..| +.|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            46777888888877 7777777 555

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.01  E-value=1.5e-06  Score=41.78  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=17.6

Q ss_pred             CCcccCccCCCcCc-cccHHHH-Hhhc
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHC   31 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~   31 (203)
                      ++||.|+.|++.|. ...|..| +.|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            46777777777777 7777777 5554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.26  E-value=7.6e-07  Score=43.25  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      +||.|+.|++.|. ..+|..| +.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5788888998888 8888888 777765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.00  E-value=4.3e-06  Score=40.54  Aligned_cols=22  Identities=27%  Similarity=0.702  Sum_probs=14.1

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +|.|..|++.|. .+.|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            566666666666 6666666666

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=1.9e-06  Score=41.54  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=22.8

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      +||.|+.|++.|. ...|..| +.|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            5799999999998 8899999 7887753

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.98  E-value=3.1e-06  Score=41.74  Aligned_cols=27  Identities=19%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             CcccCc--cCCCcCc-cccHHHH-HhhcCCC
Q 028830            8 TTKICS--HCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         8 k~y~C~--~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      +||.|+  .|++.|. .+.|..| +.|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            578887  8888888 8888888 7887653

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.97  E-value=1e-06  Score=42.14  Aligned_cols=24  Identities=21%  Similarity=0.490  Sum_probs=14.9

Q ss_pred             CCcccCccCCCcCc-cccHHHH-Hhh
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h   30 (203)
                      ++||.|+.|++.|. .+.|..| +.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            35666666666666 6666666 444

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=6e-06  Score=39.64  Aligned_cols=23  Identities=17%  Similarity=0.457  Sum_probs=15.4

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      ++|.|+.|++.|. .+.|..|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH
Confidence            3566777777776 6667777666

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.96  E-value=1.4e-06  Score=41.65  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=11.4

Q ss_pred             cceecccchhhcc-hhHHHHHHH
Q 028830          112 RTELCHLCNRYIR-LRERYNHES  133 (203)
Q Consensus       112 ~~~~C~~C~~~f~-~~~l~~H~~  133 (203)
                      +||.|+.|++.|. ...|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            4555555555554 345555554

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.96  E-value=6.9e-06  Score=39.51  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=13.5

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +|.|+.|++.|. .+.|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            556666666666 6666666655

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.94  E-value=3.9e-06  Score=40.72  Aligned_cols=23  Identities=22%  Similarity=0.537  Sum_probs=10.8

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      ++|.|..|++.|. ...|..|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            3444444444444 4444444444

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.88  E-value=5.3e-06  Score=39.29  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=17.8

Q ss_pred             cccCccCCCcCc-cccHHHH-HhhcC
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAHCS   32 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h~~   32 (203)
                      ||.|+.|++.|. ...|..| +.|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            578888888887 7788888 66764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.88  E-value=3.2e-06  Score=59.91  Aligned_cols=105  Identities=19%  Similarity=0.332  Sum_probs=74.4

Q ss_pred             ccCccCCCcCc-cccHHHH--HhhcCCCcccc--cccccccccccHHHHHHc-CCCCccCccChhhhhHHHHHhhHhccC
Q 028830           10 KICSHCDRAIP-SSNIDLH--FAHCSRNLERC--KVCGDMVPRKYAEEHFLN-THAPVACSQCSETMEREILAIHKGENC   83 (203)
Q Consensus        10 y~C~~C~~~f~-~~~l~~H--~~h~~~~~~~C--~~C~~~f~~~~~~~~~~~-~h~~~~C~~C~~~f~~~~l~~H~~~h~   83 (203)
                      ..|+.|...+. ...+..-  ..........|  ..|+..+....+..|... .+++..|+.|+..+....|..|....+
T Consensus        54 ~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~~r~~l~~H~~~~C  133 (170)
T 3hcs_A           54 HKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDC  133 (170)
T ss_dssp             SBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEEEGGGHHHHHHHTC
T ss_pred             CCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHHHHHHHHHHhhhhC
Confidence            38999988876 3211111  12222445667  468888777666655422 136889999999998889999998889


Q ss_pred             CCCcccCccCCCCCChhhHHHHHHH-hCCcce
Q 028830           84 PQRIVTCDFCEFPLPAVDLAEHQEV-CGNRTE  114 (203)
Q Consensus        84 ~~~~~~C~~C~~~f~~~~l~~H~~~-~~~~~~  114 (203)
                      +.+...|+.|+..+....|..|..+ .|+.++
T Consensus       134 ~~r~~~C~~C~~~~~~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          134 PRRQVSCDNCAASMAFEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             TTCEEECTTTCCEEEGGGHHHHHTTCCC----
T ss_pred             CCCCeECCCCCCccCHHHHHhHHHhCcChhhh
Confidence            9999999999999988899999998 576654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.86  E-value=5.1e-06  Score=40.05  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=8.7

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.|+.|++.|. .+.|..|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTG
T ss_pred             ccCCCCCchhCCHHHHHHHHHH
Confidence            44444444444 4444444433

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.85  E-value=8e-06  Score=39.23  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=12.0

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +|.|+.|++.|. ...|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            455555555555 5555555555

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.07  E-value=2.1e-06  Score=40.49  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=9.3

Q ss_pred             cccCccCCCCCC-hhhHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQE  107 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~  107 (203)
                      ||.|+.|++.|. .+.|..|++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            344444444444 444444443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.04  E-value=2.5e-06  Score=40.23  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=15.7

Q ss_pred             CcccCccCCCcCc-cccHHHH-Hhh
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h   30 (203)
                      +||.|+.|++.|. .+.|..| +.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4677777777776 7777777 544

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.82  E-value=6.1e-06  Score=39.47  Aligned_cols=21  Identities=14%  Similarity=0.393  Sum_probs=9.3

Q ss_pred             cccCccCCCCCC-hhhHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQE  107 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~  107 (203)
                      +|.|+.|++.|. .+.|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            444444444444 444444443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.82  E-value=1.2e-05  Score=39.80  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=13.1

Q ss_pred             CcccCc--cCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCD--FCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~--~C~~~f~-~~~l~~H~~~  108 (203)
                      ++|.|.  .|++.|. .+.|..|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence            455555  5555555 5555555555

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.02  E-value=2.7e-06  Score=41.42  Aligned_cols=22  Identities=18%  Similarity=0.378  Sum_probs=10.4

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +|.|..|++.|. .+.|..|+++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            444444444444 4444444444

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.00  E-value=2.9e-06  Score=41.04  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=8.5

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.|+.|++.|. .+.|..|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            34444444443 3444444333

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.78  E-value=1.4e-05  Score=39.25  Aligned_cols=22  Identities=18%  Similarity=0.532  Sum_probs=12.0

Q ss_pred             cccCc--cCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCD--FCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~--~C~~~f~-~~~l~~H~~~  108 (203)
                      ||.|+  .|++.|. .+.|..|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            45554  5555555 5555555555

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.74  E-value=1.4e-05  Score=37.71  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=10.1

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.|..|++.|. .+.|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            44444554444 4444444444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.73  E-value=1.5e-05  Score=38.61  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=17.6

Q ss_pred             CcccCccCCCcCc-cccHHHH-H-hhcCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-F-AHCSR   33 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~-~h~~~   33 (203)
                      +||.|+.|++.|. .+.|..| + .|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            4677777777777 7777777 3 56554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.67  E-value=1.5e-05  Score=38.58  Aligned_cols=19  Identities=21%  Similarity=0.457  Sum_probs=9.2

Q ss_pred             cccCccCCCCCC-hhhHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEH  105 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H  105 (203)
                      +|.|+.|++.|. .+.|..|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHH
Confidence            344444555444 4444444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.43  E-value=2.8e-05  Score=37.23  Aligned_cols=24  Identities=21%  Similarity=0.570  Sum_probs=16.7

Q ss_pred             CcccCc--cCCCcCc-cccHHHH-Hhhc
Q 028830            8 TTKICS--HCDRAIP-SSNIDLH-FAHC   31 (203)
Q Consensus         8 k~y~C~--~C~~~f~-~~~l~~H-~~h~   31 (203)
                      +||.|+  .|++.|. .+.|..| +.|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            467777  7777776 7777777 5654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.33  E-value=9.3e-05  Score=35.25  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=12.6

Q ss_pred             ceecc--cchhhcc-hhHHHHHHHhh
Q 028830          113 TELCH--LCNRYIR-LRERYNHESRC  135 (203)
Q Consensus       113 ~~~C~--~C~~~f~-~~~l~~H~~~~  135 (203)
                      +|.|+  .|++.|. ...|..|++.|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            45565  6666555 34555565443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.00058  Score=39.92  Aligned_cols=44  Identities=18%  Similarity=0.183  Sum_probs=31.1

Q ss_pred             CCCCCC-hhhHHHHHHH-h-CCc------ceecc--cchhhcc-hhHHHHHHHhhc
Q 028830           93 CEFPLP-AVDLAEHQEV-C-GNR------TELCH--LCNRYIR-LRERYNHESRCT  136 (203)
Q Consensus        93 C~~~f~-~~~l~~H~~~-~-~~~------~~~C~--~C~~~f~-~~~l~~H~~~~~  136 (203)
                      |++.|. ...|..|+.. | +.+      +|.|.  .|+..+. ...|..|++..|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            788887 8888888754 5 333      68885  8877665 468888887653

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.06  E-value=9.9e-05  Score=44.83  Aligned_cols=52  Identities=23%  Similarity=0.607  Sum_probs=24.2

Q ss_pred             cChhhhhHHHHHhhHhccCCCCcccCccCCCCCChhhHHHHHHHhCCcceec
Q 028830           65 QCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELC  116 (203)
Q Consensus        65 ~C~~~f~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~l~~H~~~~~~~~~~C  116 (203)
                      .|+..+.+..|..|+...+..+...|.+|+..|....|..|...+...+..|
T Consensus        22 ~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~~~~~~~l~~H~~~Cp~~~v~C   73 (76)
T 2yuc_A           22 RCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESSGP   73 (76)
T ss_dssp             CCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHHHTTTSCTTSSCCC
T ss_pred             cccHHhhHhHHHhhCHhhCCCcceECCCCCCccCHHHHHHHHhHCCCCccCC
Confidence            3444444444444444444445555555555555444555543344434333

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.00039  Score=40.68  Aligned_cols=44  Identities=20%  Similarity=0.411  Sum_probs=35.6

Q ss_pred             cChhhhhH-HHHHhhH-hccCCCC------cccCc--cCCCCCC-hhhHHHHHHH
Q 028830           65 QCSETMER-EILAIHK-GENCPQR------IVTCD--FCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        65 ~C~~~f~~-~~l~~H~-~~h~~~~------~~~C~--~C~~~f~-~~~l~~H~~~  108 (203)
                      .|++.|.. ..|..|+ ..|.+.+      +|.|.  .|++.+. ...|..|++.
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            38888877 6788887 4676654      89997  6999988 8899999987

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=96.73  E-value=0.00038  Score=42.14  Aligned_cols=68  Identities=24%  Similarity=0.446  Sum_probs=44.5

Q ss_pred             cHHHHHhhcCCCcccc-cccccccccccHHHHHHc--CCCCccCccChhhhhHHHHHhhHhccCCCCcccCc
Q 028830           23 NIDLHFAHCSRNLERC-KVCGDMVPRKYAEEHFLN--THAPVACSQCSETMEREILAIHKGENCPQRIVTCD   91 (203)
Q Consensus        23 ~l~~H~~h~~~~~~~C-~~C~~~f~~~~~~~~~~~--~h~~~~C~~C~~~f~~~~l~~H~~~h~~~~~~~C~   91 (203)
                      +|..|..++...+..| ..|+..+....+..|...  ..++..|..|+..+....|..|.. .++..+..|+
T Consensus         4 ~l~~H~~~C~~~~v~C~~~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~~~~~~~l~~H~~-~Cp~~~v~C~   74 (76)
T 2yuc_A            4 GSSGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEG-MCPQESSGPS   74 (76)
T ss_dssp             SCSCCCCCCCCSCCBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHHHTTT-SCTTSSCCCS
T ss_pred             HHHHHHHHCCCcccCCCccccHHhhHhHHHhhCHhhCCCcceECCCCCCccCHHHHHHHHh-HCCCCccCCC
Confidence            3444544555667778 568877776655555431  125778888888888888888874 5666666665

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.71  E-value=0.0014  Score=35.06  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=17.3

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      .+|.|+.|+..|. ...|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            5677777777777 7777777775

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.17  E-value=0.00068  Score=44.90  Aligned_cols=29  Identities=14%  Similarity=0.133  Sum_probs=21.6

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      ..++|+++|.|..|++.|. .+.|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            3466778888888888887 7788887654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.90  E-value=0.0011  Score=43.81  Aligned_cols=30  Identities=13%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             HhhcCCCcccccccccccccccHHHHHHcC
Q 028830           28 FAHCSRNLERCKVCGDMVPRKYAEEHFLNT   57 (203)
Q Consensus        28 ~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~   57 (203)
                      ..|+|+++|.|..|++.|.....|..|.+.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            457777777777777777777666666553

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.71  E-value=0.011  Score=31.65  Aligned_cols=29  Identities=21%  Similarity=0.354  Sum_probs=24.2

Q ss_pred             cceecccchhhcc-hhHHHHHHHhhcCCCC
Q 028830          112 RTELCHLCNRYIR-LRERYNHESRCTGVPE  140 (203)
Q Consensus       112 ~~~~C~~C~~~f~-~~~l~~H~~~~~~~~~  140 (203)
                      ..|.|+.|+..|+ ...|..||+..-++..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchh
Confidence            4689999999999 6899999987766543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.94  E-value=0.01  Score=39.66  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=14.1

Q ss_pred             CcccccccccccccccHHHHHH
Q 028830           34 NLERCKVCGDMVPRKYAEEHFL   55 (203)
Q Consensus        34 ~~~~C~~C~~~f~~~~~~~~~~   55 (203)
                      +++.|.+|...|.....+..|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHH
Confidence            4567777777777665444444

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=94.56  E-value=0.0074  Score=36.22  Aligned_cols=50  Identities=16%  Similarity=0.326  Sum_probs=41.0

Q ss_pred             CCCCcccCccCCCCCChhhHHHHHHHh-CCcceecccchhhcchhHHHHHH
Q 028830           83 CPQRIVTCDFCEFPLPAVDLAEHQEVC-GNRTELCHLCNRYIRLRERYNHE  132 (203)
Q Consensus        83 ~~~~~~~C~~C~~~f~~~~l~~H~~~~-~~~~~~C~~C~~~f~~~~l~~H~  132 (203)
                      ...--|.|..||..+....+..|...+ +...|.|-.|++.|....+..|-
T Consensus         6 ~~MV~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~Ht   56 (79)
T 1wjv_A            6 SGMVFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHV   56 (79)
T ss_dssp             CCCCEEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTCC
T ss_pred             CceeEEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCCCCEeCEe
Confidence            344568999999998888999998775 55689999999999877777775

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=93.98  E-value=0.03  Score=37.30  Aligned_cols=71  Identities=15%  Similarity=0.162  Sum_probs=42.0

Q ss_pred             CCccCccChhhhhH-HHHHhhH--hccCCC-CcccCcc------CCCCCC-hhhHHHHHHH-hCCcceecccchhhcch-
Q 028830           59 APVACSQCSETMER-EILAIHK--GENCPQ-RIVTCDF------CEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIRL-  125 (203)
Q Consensus        59 ~~~~C~~C~~~f~~-~~l~~H~--~~h~~~-~~~~C~~------C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~~-  125 (203)
                      +++.|..|+..|.+ +.+..|.  +.|... +.+.+..      =++.+. ..    +... .+.+.|.|..|+..|.+ 
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            57889999998877 6777776  223211 2222211      022222 11    1112 25567889999999985 


Q ss_pred             hHHHHHHH
Q 028830          126 RERYNHES  133 (203)
Q Consensus       126 ~~l~~H~~  133 (203)
                      ..+..|..
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            68888874

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=92.83  E-value=0.016  Score=34.79  Aligned_cols=39  Identities=18%  Similarity=0.483  Sum_probs=21.1

Q ss_pred             cccCccCCCcCccccHHHHHhhcCC-Cccccccccccccc
Q 028830            9 TKICSHCDRAIPSSNIDLHFAHCSR-NLERCKVCGDMVPR   47 (203)
Q Consensus         9 ~y~C~~C~~~f~~~~l~~H~~h~~~-~~~~C~~C~~~f~~   47 (203)
                      .|.|+.|+.++.+..+..|...+.. ..|.|-.|++.|..
T Consensus        10 ~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A           10 FFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             EEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             EEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCC
Confidence            3556666666555666666323322 35556666666654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.91  E-value=0.12  Score=25.91  Aligned_cols=23  Identities=13%  Similarity=0.372  Sum_probs=15.1

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      .++.|..|+-+|+ ...+..|.+.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            4566666776676 6666666665

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.48  E-value=0.11  Score=27.73  Aligned_cols=32  Identities=19%  Similarity=0.467  Sum_probs=18.5

Q ss_pred             cccCccCCCcCccccHHHHHhhcCCCcccccccccccc
Q 028830            9 TKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVP   46 (203)
Q Consensus         9 ~y~C~~C~~~f~~~~l~~H~~h~~~~~~~C~~C~~~f~   46 (203)
                      .|.|..|++.|+..+|..      -...+|++||....
T Consensus         3 iY~C~rCg~~fs~~el~~------lP~IrCpyCGyrii   34 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQLKV------LPGVRCPYCGYKII   34 (48)
T ss_dssp             --CCCCTTTTCCCCCSCC------CSSSCCTTTCCSCE
T ss_pred             EEEeeccCCCccHHHHhh------CCCcccCccCcEEE
Confidence            477888888887555431      12356777776543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=88.63  E-value=0.36  Score=23.98  Aligned_cols=24  Identities=17%  Similarity=0.379  Sum_probs=12.3

Q ss_pred             eecccchhhcch-hHHHHHHHhhcC
Q 028830          114 ELCHLCNRYIRL-RERYNHESRCTG  137 (203)
Q Consensus       114 ~~C~~C~~~f~~-~~l~~H~~~~~~  137 (203)
                      |.|+.|-+.|.. ..|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            555555555542 455555544443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=88.60  E-value=0.27  Score=24.44  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH-hC
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV-CG  110 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~-~~  110 (203)
                      ..|.|+.|.+.|. ...|..|... |.
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            3588999999998 9999999887 63

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.25  E-value=0.4  Score=23.99  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=18.1

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCS   32 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~   32 (203)
                      ..++.|..|+-.|. ..++..| ...+.
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~YC~   33 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQFYCK   33 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHHTSC
T ss_pred             cCcCeeccccceehhhHHHhhhheecCC
Confidence            45677888888887 7778777 44443

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=84.71  E-value=0.29  Score=29.31  Aligned_cols=14  Identities=14%  Similarity=0.304  Sum_probs=10.8

Q ss_pred             Ccceecccchhhcc
Q 028830          111 NRTELCHLCNRYIR  124 (203)
Q Consensus       111 ~~~~~C~~C~~~f~  124 (203)
                      +-.|+||.||.-|-
T Consensus        49 ~F~FkCP~CgEEFy   62 (95)
T 2k5c_A           49 EFVFKCPVCGEEFY   62 (95)
T ss_dssp             HSEEECTTTCCEEE
T ss_pred             HHhhcCCCccHHHh
Confidence            35699999998663

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=84.39  E-value=0.54  Score=24.15  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=16.5

Q ss_pred             CCcccCccCCCcCccccHHHH-Hhh
Q 028830            7 ETTKICSHCDRAIPSSNIDLH-FAH   30 (203)
Q Consensus         7 ~k~y~C~~C~~~f~~~~l~~H-~~h   30 (203)
                      ...|.|+.|+..|....++.| -.|
T Consensus         7 ~~~~~C~~C~~~i~~~~~~EH~D~H   31 (39)
T 2i5o_A            7 EDQVPCEKCGSLVPVWDMPEHMDYH   31 (39)
T ss_dssp             CCEEECTTTCCEEEGGGHHHHHHHH
T ss_pred             CCCcccccccCcCCcccccchhhHH
Confidence            346788888888775556777 455

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.81  E-value=0.59  Score=29.44  Aligned_cols=49  Identities=18%  Similarity=0.396  Sum_probs=27.3

Q ss_pred             cccCc-cCCCCCChhhHHHHHHHhCCcceecc----cchhhcchhHHHHHHHhh
Q 028830           87 IVTCD-FCEFPLPAVDLAEHQEVCGNRTELCH----LCNRYIRLRERYNHESRC  135 (203)
Q Consensus        87 ~~~C~-~C~~~f~~~~l~~H~~~~~~~~~~C~----~C~~~f~~~~l~~H~~~~  135 (203)
                      +..|+ .|+..|....|..|+..+.+-...|.    .|.....+..|..|++.+
T Consensus        37 ~i~CP~~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~C   90 (100)
T 2yre_A           37 LIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMC   90 (100)
T ss_dssp             EEECTTCCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTC
T ss_pred             eeeCCcccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhC
Confidence            45566 56665556666667655544444443    333334456777777644

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=83.29  E-value=0.52  Score=29.95  Aligned_cols=11  Identities=27%  Similarity=0.818  Sum_probs=6.1

Q ss_pred             ccccccccccc
Q 028830           35 LERCKVCGDMV   45 (203)
Q Consensus        35 ~~~C~~C~~~f   45 (203)
                      ||.|..||..|
T Consensus        67 p~~C~~CG~~F   77 (105)
T 2gmg_A           67 PAQCRKCGFVF   77 (105)
T ss_dssp             CCBBTTTCCBC
T ss_pred             CcChhhCcCee
Confidence            45555555555

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=80.30  E-value=0.83  Score=22.05  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=16.6

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH-h
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV-C  109 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~-~  109 (203)
                      -.|.+|.+.++ -.+|..|.+. |
T Consensus        10 qhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35777888887 7788888776 5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.6
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.56
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.26
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.26
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.22
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.18
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.17
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.14
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.12
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.08
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.08
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.05
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.0
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.97
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.92
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.91
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.79
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.78
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.78
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.76
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.73
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.73
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.72
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.65
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.64
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.58
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.49
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.48
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.45
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.4
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.39
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.38
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.31
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.29
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.27
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.26
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.13
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.98
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.89
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.87
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.83
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.82
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.73
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.48
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.48
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.45
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.42
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.41
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.4
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.34
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.31
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.25
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.21
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.2
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.19
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.16
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.1
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.09
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.01
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.96
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.93
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.91
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.82
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.57
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.56
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.53
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.51
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.49
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.48
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.36
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.35
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.3
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.08
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.04
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.88
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.83
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.52
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.46
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.33
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.96
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.94
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.73
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.7
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.64
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.23
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.68
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.57
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	92.43
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	92.37
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.27
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.1
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.98
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.92
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	91.63
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.41
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.79
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.45
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.95
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	89.57
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.37
d1k2fa_	190	SIAH, seven in absentia homolog {Mouse (Mus muscul	87.33
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	86.91
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	84.85
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	83.65
d1fu9a_	36	U-shaped transcription factor, different fingers {	82.15
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	81.97

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-16  Score=89.47  Aligned_cols=51  Identities=24%  Similarity=0.396  Sum_probs=48.2

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcCCCcccccccccccccccHHHHHHcCC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCSRNLERCKVCGDMVPRKYAEEHFLNTH   58 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~C~~C~~~f~~~~~~~~~~~~h   58 (203)
                      ||||.| .||+.|. ..+|..| +.|++++||.|++||+.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            799999 5999999 9999999 9999999999999999999999888888876

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7e-16  Score=87.21  Aligned_cols=50  Identities=16%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             CCcccCccCCCCCC-hhhHHHHHHH-hCCcceecccchhhcc-hhHHHHHHHhh
Q 028830           85 QRIVTCDFCEFPLP-AVDLAEHQEV-CGNRTELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus        85 ~~~~~C~~C~~~f~-~~~l~~H~~~-~~~~~~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      |++|.|+ ||+.|. ...|..|+++ .|++||.|+.||+.|. .+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5788884 888888 8888888888 4888888888888887 57888888654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1e-12  Score=68.03  Aligned_cols=33  Identities=18%  Similarity=0.389  Sum_probs=30.4

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      |++|+++|||.|++|++.|. .++|..| +.|+||
T Consensus         4 ~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           4 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            57899999999999999999 9999999 899886

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.6e-13  Score=65.58  Aligned_cols=31  Identities=29%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             ccCCCCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            3 MTSDETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         3 ~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      +|+|+|||.|.+|++.|. .++|..| +.|++|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            699999999999999999 9999999 899986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.5e-12  Score=67.34  Aligned_cols=35  Identities=23%  Similarity=0.545  Sum_probs=32.3

Q ss_pred             CCCcccCccCCCcCc-cccHHHH-H-hhcCCCcccccc
Q 028830            6 DETTKICSHCDRAIP-SSNIDLH-F-AHCSRNLERCKV   40 (203)
Q Consensus         6 ~~k~y~C~~C~~~f~-~~~l~~H-~-~h~~~~~~~C~~   40 (203)
                      -+|||+|.+|++.|. .++|+.| + .|++++||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            479999999999999 9999999 6 699999999974

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.8e-12  Score=66.17  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=29.5

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      |+|+|||||+|++|++.|. .++|..| +.|.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            7899999999999999999 9999999 888765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.1e-12  Score=65.62  Aligned_cols=34  Identities=18%  Similarity=0.367  Sum_probs=26.5

Q ss_pred             CCcccCccCCCCCC-hhhHHHHHHH-h-CCcceeccc
Q 028830           85 QRIVTCDFCEFPLP-AVDLAEHQEV-C-GNRTELCHL  118 (203)
Q Consensus        85 ~~~~~C~~C~~~f~-~~~l~~H~~~-~-~~~~~~C~~  118 (203)
                      ++||+|..||+.|. .++|++|++. | +++||.|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            57888888888888 8888888764 5 888888863

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=5.3e-12  Score=64.81  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=27.7

Q ss_pred             CcccCCCCcccCccCCCcCc-cccHHHH-HhhcC
Q 028830            1 MAMTSDETTKICSHCDRAIP-SSNIDLH-FAHCS   32 (203)
Q Consensus         1 ~~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~   32 (203)
                      +|+|+|||||+|++|++.|. +++|..| +.|..
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            47899999999999999998 9999999 77753

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.8e-12  Score=65.41  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=31.4

Q ss_pred             hhHhccCCCCcccCccCCCCCC-hhhHHHHHHHh-CC
Q 028830           77 IHKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVC-GN  111 (203)
Q Consensus        77 ~H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~-~~  111 (203)
                      +|+++|++++||+|++||++|. .++|..|+++| ||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5888999999999999999999 99999999984 64

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=9.6e-12  Score=63.81  Aligned_cols=32  Identities=16%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             hHhccCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           78 HKGENCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        78 H~~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      |.++|+|++||+|++|++.|. .++|.+|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            678899999999999999999 99999998875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1e-11  Score=63.14  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=26.5

Q ss_pred             cccCCCCcccCccCCCcCc-cccHHHH-Hhh
Q 028830            2 AMTSDETTKICSHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus         2 ~~h~~~k~y~C~~C~~~f~-~~~l~~H-~~h   30 (203)
                      |+|+|||||+|+.|++.|. .++|+.| +.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            6899999999999999999 9999999 543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=2e-11  Score=61.38  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=27.1

Q ss_pred             cCCCCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            4 TSDETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         4 h~~~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      |+|||||+|++|++.|. +++|++| +.|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            78999999999999998 9999999 888865

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3e-11  Score=61.46  Aligned_cols=30  Identities=13%  Similarity=0.237  Sum_probs=24.8

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      ++|+|++||+|.+||++|. .+.|..|+++|
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H   31 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY   31 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCccc
Confidence            4688888888888888888 88888888884

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4e-11  Score=59.41  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=25.3

Q ss_pred             ccCCCCcccCccCCCCCC-hhhHHHHHHHh-CC
Q 028830           81 ENCPQRIVTCDFCEFPLP-AVDLAEHQEVC-GN  111 (203)
Q Consensus        81 ~h~~~~~~~C~~C~~~f~-~~~l~~H~~~~-~~  111 (203)
                      +|+|++||+|.+||++|. .++|..|+++| ||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478888888888888888 88888888884 54

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=7e-11  Score=59.98  Aligned_cols=32  Identities=9%  Similarity=0.171  Sum_probs=24.0

Q ss_pred             hccCCCCcccCccCCCCCC-hhhHHHHHHH-hCC
Q 028830           80 GENCPQRIVTCDFCEFPLP-AVDLAEHQEV-CGN  111 (203)
Q Consensus        80 ~~h~~~~~~~C~~C~~~f~-~~~l~~H~~~-~~~  111 (203)
                      ++|+||+||+|++|++.|. .++|++|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            3577888888888888887 8888888765 543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.2e-10  Score=58.45  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             cCCCCcccCccCCCCCC-hhhHHHHHHHh
Q 028830           82 NCPQRIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        82 h~~~~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      |+|++||+|++|++.|. .++|++|+++|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            56777777777777777 77777777765

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.1e-10  Score=54.42  Aligned_cols=27  Identities=19%  Similarity=0.449  Sum_probs=25.0

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      |||.|++|++.|. +++|..| ++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            6999999999999 9999999 9999875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.3e-10  Score=55.25  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=23.5

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCS   32 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~   32 (203)
                      ||||+|++|++.|. +++|..| +.|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            68999999999998 9999999 88875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.91  E-value=2.3e-10  Score=54.97  Aligned_cols=27  Identities=22%  Similarity=0.555  Sum_probs=24.9

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      |||.|++|++.|. .+.|++| +.|++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            6999999999999 9999999 8999885

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=1.1e-09  Score=51.97  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=14.5

Q ss_pred             CCcccCccCCCCCC-hhhHHHHHHH
Q 028830           85 QRIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        85 ~~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |+||+|++|++.|. .++|.+|+++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCC
Confidence            35666666666665 6666666655

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=1e-09  Score=58.98  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=26.3

Q ss_pred             ccCCCCcccCcc--CCCcCc-cccHHHH-HhhcCCC
Q 028830            3 MTSDETTKICSH--CDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         3 ~h~~~k~y~C~~--C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      .|+|++||.|+.  |++.|. .++|..| +.|++++
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            578888888865  888888 8888888 8888874

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.78  E-value=1.7e-09  Score=51.88  Aligned_cols=26  Identities=19%  Similarity=0.448  Sum_probs=15.2

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH-hCC
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV-CGN  111 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~-~~~  111 (203)
                      +||.|++|++.|. .+.|.+|+++ +||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            3566666666666 6666666666 344

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.4e-09  Score=50.33  Aligned_cols=23  Identities=22%  Similarity=0.405  Sum_probs=12.7

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |||+|.+||+.|. .+.|.+|+++
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccC
Confidence            3555555555555 5555555554

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.3e-09  Score=50.75  Aligned_cols=26  Identities=15%  Similarity=0.304  Sum_probs=15.7

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH-hCC
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV-CGN  111 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~-~~~  111 (203)
                      +||.|++||+.|. .+.|.+|+++ .|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            4566666666666 6666666666 344

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-09  Score=50.62  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             CcccCccCCCcCc-cccHHHH-Hhhc
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHC   31 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~   31 (203)
                      |||+|++||+.|. .++|..| +.|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            6888888888888 8888888 7774

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.7e-09  Score=54.62  Aligned_cols=31  Identities=16%  Similarity=0.394  Sum_probs=28.3

Q ss_pred             ccCcc--CCCcCc-cccHHHH-HhhcCCCcccccc
Q 028830           10 KICSH--CDRAIP-SSNIDLH-FAHCSRNLERCKV   40 (203)
Q Consensus        10 y~C~~--C~~~f~-~~~l~~H-~~h~~~~~~~C~~   40 (203)
                      |.|+.  |++.|. +.+|++| +.|++++||.|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            78865  999999 9999999 9999999999973

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.6e-09  Score=52.64  Aligned_cols=30  Identities=23%  Similarity=0.537  Sum_probs=21.9

Q ss_pred             ccCcc--CCCCCC-hhhHHHHHHH-hCCcceecc
Q 028830           88 VTCDF--CEFPLP-AVDLAEHQEV-CGNRTELCH  117 (203)
Q Consensus        88 ~~C~~--C~~~f~-~~~l~~H~~~-~~~~~~~C~  117 (203)
                      |.|+.  |++.|. .+.|++|+++ .|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56665  777777 7777777777 477777775

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.2e-09  Score=57.72  Aligned_cols=37  Identities=16%  Similarity=0.413  Sum_probs=29.2

Q ss_pred             HHhhHhccCCCCcccCcc--CCCCCC-hhhHHHHHHH-hCCc
Q 028830           75 LAIHKGENCPQRIVTCDF--CEFPLP-AVDLAEHQEV-CGNR  112 (203)
Q Consensus        75 l~~H~~~h~~~~~~~C~~--C~~~f~-~~~l~~H~~~-~~~~  112 (203)
                      |..|+ .|.+++||.|.+  |++.|. .++|..|+++ +|++
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45565 488889999977  999998 8889999888 4664

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-08  Score=49.20  Aligned_cols=26  Identities=19%  Similarity=0.519  Sum_probs=23.4

Q ss_pred             CcccCcc--CCCcCc-cccHHHH-HhhcCC
Q 028830            8 TTKICSH--CDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         8 k~y~C~~--C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      |||.|+.  |++.|. .++|++| +.|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899977  999998 9999999 899885

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.6e-08  Score=48.70  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=23.3

Q ss_pred             CcccCcc--CCCcCc-cccHHHH-HhhcCC
Q 028830            8 TTKICSH--CDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         8 k~y~C~~--C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      |||.|+.  |++.|. .++|+.| +.|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999966  999998 9999999 899885

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.6e-08  Score=48.32  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=23.9

Q ss_pred             CcccC--ccCCCcCc-cccHHHH-HhhcCCC
Q 028830            8 TTKIC--SHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         8 k~y~C--~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      |||.|  +.|++.|. .++|++| ++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            68999  57999998 9999999 8999875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.9e-08  Score=46.29  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=16.1

Q ss_pred             CcccCcc--CCCCCC-hhhHHHHHHHh
Q 028830           86 RIVTCDF--CEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        86 ~~~~C~~--C~~~f~-~~~l~~H~~~~  109 (203)
                      +||.|++  |++.|. .+.|++|+++|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~H   27 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSH   27 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcC
Confidence            4667766  777776 67777777663

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=7.7e-08  Score=46.86  Aligned_cols=27  Identities=26%  Similarity=0.583  Sum_probs=22.0

Q ss_pred             CCcccCcc--CCCcCc-cccHHHH-HhhcCC
Q 028830            7 ETTKICSH--CDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         7 ~k~y~C~~--C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      |+||.|+.  |++.|. .++|.+| +.|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68899965  999998 8889999 788753

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=9e-08  Score=46.60  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=15.4

Q ss_pred             CCcccCcc--CCCCCC-hhhHHHHHHHh
Q 028830           85 QRIVTCDF--CEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        85 ~~~~~C~~--C~~~f~-~~~l~~H~~~~  109 (203)
                      |+||.|++  |++.|. .++|.+|+++|
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~H   28 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhc
Confidence            35666655  666666 66666666654

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.9e-08  Score=46.15  Aligned_cols=23  Identities=22%  Similarity=0.593  Sum_probs=14.4

Q ss_pred             CcccCcc--CCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDF--CEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~--C~~~f~-~~~l~~H~~~  108 (203)
                      +||.|++  |+++|. .+.|.+|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccc
Confidence            4566655  666666 6666666666

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.6e-07  Score=45.45  Aligned_cols=23  Identities=22%  Similarity=0.556  Sum_probs=13.0

Q ss_pred             CcccCcc--CCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDF--CEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~--C~~~f~-~~~l~~H~~~  108 (203)
                      +||.|++  |++.|. .++|.+|+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc
Confidence            3555542  666665 5566666655

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=8.2e-08  Score=45.62  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=21.8

Q ss_pred             CcccCcc--CCCcCc-cccHHHH-HhhcC
Q 028830            8 TTKICSH--CDRAIP-SSNIDLH-FAHCS   32 (203)
Q Consensus         8 k~y~C~~--C~~~f~-~~~l~~H-~~h~~   32 (203)
                      |||+|+.  |++.|. .++|++| +.|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899955  999998 9999999 88875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.7e-07  Score=44.00  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=18.0

Q ss_pred             CcccCcc--CCCCCC-hhhHHHHHHHh
Q 028830           86 RIVTCDF--CEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        86 ~~~~C~~--C~~~f~-~~~l~~H~~~~  109 (203)
                      +||.|++  |+++|. .++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            5777777  888887 77788887764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2e-07  Score=43.75  Aligned_cols=24  Identities=25%  Similarity=0.747  Sum_probs=20.0

Q ss_pred             CcccCcc--CCCcCc-cccHHHH-Hhhc
Q 028830            8 TTKICSH--CDRAIP-SSNIDLH-FAHC   31 (203)
Q Consensus         8 k~y~C~~--C~~~f~-~~~l~~H-~~h~   31 (203)
                      +||.|+.  |++.|. .++|++| +.|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899955  999998 8999999 7774

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=5.1e-07  Score=40.86  Aligned_cols=23  Identities=17%  Similarity=0.525  Sum_probs=12.4

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +||.|+.||+.|. +...++|.++
T Consensus         2 kPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhh
Confidence            4555555555555 5555555544

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=4.8e-07  Score=42.88  Aligned_cols=23  Identities=26%  Similarity=0.631  Sum_probs=12.8

Q ss_pred             CcccCcc--CCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDF--CEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~--C~~~f~-~~~l~~H~~~  108 (203)
                      +||.|++  |++.|. .++|.+|+++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            3555554  555555 5555555555

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.4e-07  Score=41.14  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      ||||.|++|+..|. +..+..| +.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68888999998888 8888888 777653

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=7.8e-07  Score=40.24  Aligned_cols=24  Identities=29%  Similarity=0.474  Sum_probs=15.7

Q ss_pred             CCcccCccCCCcCc-cccHHHH-Hhh
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h   30 (203)
                      ||||.|+.|++.|. +...++| ..|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            46677777777776 6666666 555

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=7.6e-07  Score=41.86  Aligned_cols=30  Identities=13%  Similarity=0.372  Sum_probs=26.7

Q ss_pred             CcccCccCCCcCc-cccHHHH-HhhcCCCccc
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHCSRNLER   37 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~~~~~~~   37 (203)
                      +-..|..||+.|. ...|.+| +.|++++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            4567999999999 9999999 9999999983

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.9e-06  Score=42.80  Aligned_cols=27  Identities=15%  Similarity=0.431  Sum_probs=23.4

Q ss_pred             CCCCcccCccCCCcCc-cccHHHHHhhc
Q 028830            5 SDETTKICSHCDRAIP-SSNIDLHFAHC   31 (203)
Q Consensus         5 ~~~k~y~C~~C~~~f~-~~~l~~H~~h~   31 (203)
                      +|.|||.|..|++.|. +.++.+|..|+
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhh
Confidence            5789999999999999 99999996554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.8e-06  Score=37.12  Aligned_cols=23  Identities=13%  Similarity=0.323  Sum_probs=12.9

Q ss_pred             ceecccchhhcch-hHHHHHHHhh
Q 028830          113 TELCHLCNRYIRL-RERYNHESRC  135 (203)
Q Consensus       113 ~~~C~~C~~~f~~-~~l~~H~~~~  135 (203)
                      |.+|+.|++.|++ ..|..|++.|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CCccchhhhHhcchhHHHHHhhcc
Confidence            3456666666653 4666666543

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.9e-06  Score=37.80  Aligned_cols=25  Identities=28%  Similarity=0.711  Sum_probs=21.7

Q ss_pred             cccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      .+.|.+||+.|. .+.|++| +.|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            357999999998 9999999 899875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.4e-06  Score=36.85  Aligned_cols=24  Identities=17%  Similarity=0.516  Sum_probs=15.8

Q ss_pred             cccCccCCCcCc-cccHHHH-HhhcC
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAHCS   32 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h~~   32 (203)
                      |++|+.|++.|+ +..|+.| +.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            456777777776 6667777 56653

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.1e-06  Score=37.59  Aligned_cols=23  Identities=17%  Similarity=0.442  Sum_probs=15.3

Q ss_pred             CcccCcc--CCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDF--CEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~--C~~~f~-~~~l~~H~~~  108 (203)
                      +||.|..  |++++. .++|+.|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            4666665  666666 6677777665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=4.9e-06  Score=39.03  Aligned_cols=29  Identities=24%  Similarity=0.362  Sum_probs=16.4

Q ss_pred             CccCccChhhhhH-HHHHhhHhccCCCCcc
Q 028830           60 PVACSQCSETMER-EILAIHKGENCPQRIV   88 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~~h~~~~~~   88 (203)
                      ...|..||+.|.. -.|.+|...|.+|+||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            3445555555555 4556666666666655

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.5e-05  Score=36.46  Aligned_cols=27  Identities=15%  Similarity=0.305  Sum_probs=16.9

Q ss_pred             Ccceecccchhhcch-hHHHHHHHhhcC
Q 028830          111 NRTELCHLCNRYIRL-RERYNHESRCTG  137 (203)
Q Consensus       111 ~~~~~C~~C~~~f~~-~~l~~H~~~~~~  137 (203)
                      ++||.|+.|+..|.+ ..+..|.+.|.+
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            466777777777763 456666665544

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3e-05  Score=34.85  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=23.1

Q ss_pred             cccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      .|.|+.|+.... .+-|+.| +.|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            389999999998 9999999 9999874

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.9e-05  Score=35.11  Aligned_cols=20  Identities=30%  Similarity=0.486  Sum_probs=8.9

Q ss_pred             cCccCCCCCC-hhhHHHHHHH
Q 028830           89 TCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        89 ~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      .|.+||+.|. ++.|++|+.+
T Consensus         4 vc~ecgkaf~essklkrh~lv   24 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLV   24 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGG
T ss_pred             hHHHHhHHHHHHHHHHHHhhc
Confidence            3444444444 4444444433

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3.4e-05  Score=33.75  Aligned_cols=24  Identities=17%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             cCccCCCcCc-cccHHHH-HhhcCCC
Q 028830           11 ICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus        11 ~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      .|+.|.+.|. +..|+.| +.|++++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            6999999998 8999999 9999874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=6.3e-05  Score=33.95  Aligned_cols=25  Identities=24%  Similarity=0.642  Sum_probs=17.8

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH-hC
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV-CG  110 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~-~~  110 (203)
                      +||.|+.|..... .++|+.|.++ |+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            4677777777766 7777777777 53

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.41  E-value=4e-05  Score=34.33  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=16.9

Q ss_pred             CcccCcc--CCCCCC-hhhHHHHHHHh
Q 028830           86 RIVTCDF--CEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        86 ~~~~C~~--C~~~f~-~~~l~~H~~~~  109 (203)
                      .||+|+.  |++.|+ .+-|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4677766  777777 77777776653

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=2.5e-05  Score=34.90  Aligned_cols=26  Identities=31%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCS   32 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~   32 (203)
                      |+||+|..|...-. .+.|..| +.|++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            57888888887776 7888888 77775

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.34  E-value=5.6e-05  Score=32.53  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=14.8

Q ss_pred             ccCccCCCCCC-hhhHHHHHHHh
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      |+|..|.++|. .+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            56677777776 77777776654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=5.7e-05  Score=33.44  Aligned_cols=24  Identities=17%  Similarity=0.552  Sum_probs=17.1

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHHh
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      +||+|..|...-. .++|+.|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            5777777777766 77777777764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=5.8e-05  Score=33.67  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=10.3

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +||+|+.|...-. ++.|..|++.
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~   25 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRS   25 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTT
T ss_pred             CcceeeecccccCCchheEEeeec
Confidence            3444444444443 4444444443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=7.3e-05  Score=33.55  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=11.8

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      ||.|..|+..|. ..+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            355555555555 5555555544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=9.2e-05  Score=33.79  Aligned_cols=26  Identities=15%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             cceecc--cchhhcc-hhHHHHHHHhhcC
Q 028830          112 RTELCH--LCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus       112 ~~~~C~--~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      +||.|.  .|++++. -++|.+|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            689996  4889998 5899999987764

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00018  Score=32.27  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=18.6

Q ss_pred             ccCccCCCCCC-hhhHHHHHHHh-CC
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEVC-GN  111 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~~-~~  111 (203)
                      |.|++||.... ++.|+.|++.| ++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            67888888887 88888888874 54

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=9.7e-05  Score=36.54  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=12.5

Q ss_pred             CCCcccCccCCCCCC-hhhHHHHH
Q 028830           84 PQRIVTCDFCEFPLP-AVDLAEHQ  106 (203)
Q Consensus        84 ~~~~~~C~~C~~~f~-~~~l~~H~  106 (203)
                      |-+||.|..|++.|. ..++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            345555555555555 55555554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=8.1e-05  Score=32.93  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             CcccCccCCCcCc-cccHHHH-Hhhc
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-FAHC   31 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~~h~   31 (203)
                      |||+|..|+..-. .++|..| +.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            6888888888776 8888888 7764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00016  Score=32.53  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=13.3

Q ss_pred             cceecccchhhcc-hhHHHHHHHhhcC
Q 028830          112 RTELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus       112 ~~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      +||+|..|..... .++|..|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            3555666544333 3466666555443

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.01  E-value=0.00017  Score=30.96  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=11.8

Q ss_pred             ccCccCCCcCc-cccHHHH-Hhh
Q 028830           10 KICSHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus        10 y~C~~C~~~f~-~~~l~~H-~~h   30 (203)
                      |+|..|.++|- ++.|.+| +.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45555666555 5555555 444

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00029  Score=31.71  Aligned_cols=26  Identities=31%  Similarity=0.464  Sum_probs=21.2

Q ss_pred             CcccCccCCCcCc-cccHHHH-H-hhcCC
Q 028830            8 TTKICSHCDRAIP-SSNIDLH-F-AHCSR   33 (203)
Q Consensus         8 k~y~C~~C~~~f~-~~~l~~H-~-~h~~~   33 (203)
                      |||.|..|...-. .++|+.| . .|..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            6899999998887 9999999 4 56544

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00021  Score=32.13  Aligned_cols=26  Identities=27%  Similarity=0.731  Sum_probs=23.1

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH-hCC
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV-CGN  111 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~-~~~  111 (203)
                      +||+|.+|+.-.. .++|..|++. |+.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5899999998888 9999999998 764

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.93  E-value=0.00021  Score=32.89  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=16.6

Q ss_pred             ceecccchhhcch-hHHHHHHHhhcCC
Q 028830          113 TELCHLCNRYIRL-RERYNHESRCTGV  138 (203)
Q Consensus       113 ~~~C~~C~~~f~~-~~l~~H~~~~~~~  138 (203)
                      ||.|..|++.|.+ .-|.+|.++-|++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            5677777777764 4666676655543

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.91  E-value=0.00015  Score=32.37  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             CcccC--ccCCCcCc-cccHHHH-Hhh
Q 028830            8 TTKIC--SHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus         8 k~y~C--~~C~~~f~-~~~l~~H-~~h   30 (203)
                      .||+|  ..|++.|. .+.|++| ..|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            58999  56999998 8999999 766

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.82  E-value=0.00026  Score=31.75  Aligned_cols=26  Identities=15%  Similarity=0.482  Sum_probs=22.2

Q ss_pred             CcccC--ccCCCcCc-cccHHHH-HhhcCC
Q 028830            8 TTKIC--SHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         8 k~y~C--~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      +||.|  ..|.+.|. ...|.+| +.|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            57888  67999998 8899999 899875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00025  Score=30.91  Aligned_cols=19  Identities=21%  Similarity=0.336  Sum_probs=8.3

Q ss_pred             CccCCCCCC-hhhHHHHHHH
Q 028830           90 CDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        90 C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |+.|.+.|. .-.|+.|.+.
T Consensus         3 cp~c~k~f~skyylkvhnr~   22 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRK   22 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHH
T ss_pred             CcchHHHHHHhHhhhhcccc
Confidence            444444444 4444444444

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.56  E-value=0.00037  Score=32.03  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=20.4

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH-hC
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV-CG  110 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~-~~  110 (203)
                      ||.|.+|++.|. ..-|.+|... |+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            688999999998 8888899877 74

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00054  Score=31.48  Aligned_cols=25  Identities=24%  Similarity=0.541  Sum_probs=17.1

Q ss_pred             CcccCc--cCCCcCc-cccHHHH--HhhcC
Q 028830            8 TTKICS--HCDRAIP-SSNIDLH--FAHCS   32 (203)
Q Consensus         8 k~y~C~--~C~~~f~-~~~l~~H--~~h~~   32 (203)
                      |||.|.  .|.+.|+ .++-..|  ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            578884  4888887 7777777  56654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00056  Score=30.04  Aligned_cols=21  Identities=29%  Similarity=0.610  Sum_probs=13.9

Q ss_pred             ceecccchh-hcchhHHHHHHH
Q 028830          113 TELCHLCNR-YIRLRERYNHES  133 (203)
Q Consensus       113 ~~~C~~C~~-~f~~~~l~~H~~  133 (203)
                      ||+|..||+ .|++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            567777777 445667777754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00054  Score=30.64  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=20.0

Q ss_pred             ceecccchhhcc-hhHHHHHHHhh
Q 028830          113 TELCHLCNRYIR-LRERYNHESRC  135 (203)
Q Consensus       113 ~~~C~~C~~~f~-~~~l~~H~~~~  135 (203)
                      ||.|..|+.+|. ..+|..||+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999998 57999999753

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00061  Score=30.41  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=22.5

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcCC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      |.-|.|..|...|. +..|+.| ..|+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45688999999998 8999999 688874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.36  E-value=0.00076  Score=33.03  Aligned_cols=24  Identities=21%  Similarity=0.301  Sum_probs=10.9

Q ss_pred             cccccccccccccccHHHHHHcCC
Q 028830           35 LERCKVCGDMVPRKYAEEHFLNTH   58 (203)
Q Consensus        35 ~~~C~~C~~~f~~~~~~~~~~~~h   58 (203)
                      .|.|.+|++.|.+...|--|++.|
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTT
T ss_pred             ccCCCCCCCccCCcccccchHhhh
Confidence            344444444444444444444444

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.001  Score=28.49  Aligned_cols=20  Identities=25%  Similarity=0.429  Sum_probs=9.4

Q ss_pred             cccCccCCCCCC-hhhHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQ  106 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~  106 (203)
                      ||+|.-|+..|. ..+|+.|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            444444444444 44444444

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00077  Score=32.78  Aligned_cols=26  Identities=19%  Similarity=0.589  Sum_probs=21.3

Q ss_pred             CCCcccC--ccCCCcCc-cccHHHH-Hhhc
Q 028830            6 DETTKIC--SHCDRAIP-SSNIDLH-FAHC   31 (203)
Q Consensus         6 ~~k~y~C--~~C~~~f~-~~~l~~H-~~h~   31 (203)
                      ++|||.|  +.|+..|. ...|..| ..|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  88999998 8888888 5664

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.00083  Score=28.75  Aligned_cols=19  Identities=21%  Similarity=0.550  Sum_probs=16.5

Q ss_pred             cccCccCCCcCc-cccHHHH
Q 028830            9 TKICSHCDRAIP-SSNIDLH   27 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H   27 (203)
                      ||+|..|...|. +.+|+.|
T Consensus         2 pykcsscsqqfmqkkdlqsh   21 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSH   21 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHH
Confidence            788999998887 8888888

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.04  E-value=0.0012  Score=32.25  Aligned_cols=28  Identities=21%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             CCcccCccCCCcCc-cccHHHH-HhhcCCC
Q 028830            7 ETTKICSHCDRAIP-SSNIDLH-FAHCSRN   34 (203)
Q Consensus         7 ~k~y~C~~C~~~f~-~~~l~~H-~~h~~~~   34 (203)
                      .+.|.|..|++.|. ...|--| ..|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            46799999999998 8999999 7887654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.0049  Score=26.95  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=15.8

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      ||+|..||+.+- ..+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            577788887765 7777777654

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0007  Score=30.22  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=16.3

Q ss_pred             CccCccChhhhhH-HHHHhhHhccCCC
Q 028830           60 PVACSQCSETMER-EILAIHKGENCPQ   85 (203)
Q Consensus        60 ~~~C~~C~~~f~~-~~l~~H~~~h~~~   85 (203)
                      .|.|..|...|.+ -.|..|+..|+|+
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccCC
Confidence            3566666666655 4666666666653

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.005  Score=31.37  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=15.1

Q ss_pred             cccCccCCCCCC-hhhHHHHHHHhCC
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEVCGN  111 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~~~~  111 (203)
                      .|.|..|+|.|. ...|++|.-.||.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            456666666666 6666666555543

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0038  Score=30.25  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=15.7

Q ss_pred             CCcccCc--cCCCCCC-hhhHHHHHHHh
Q 028830           85 QRIVTCD--FCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        85 ~~~~~C~--~C~~~f~-~~~l~~H~~~~  109 (203)
                      ++||.|.  -|+.+|. ...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            5677773  3777776 66666666543

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0019  Score=29.59  Aligned_cols=21  Identities=33%  Similarity=0.632  Sum_probs=13.4

Q ss_pred             CcccCcc--CCCCCC-hhhHHHHH
Q 028830           86 RIVTCDF--CEFPLP-AVDLAEHQ  106 (203)
Q Consensus        86 ~~~~C~~--C~~~f~-~~~l~~H~  106 (203)
                      +||.|++  |+|.|+ .++-..|+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            4666665  666666 66666665

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0087  Score=27.97  Aligned_cols=25  Identities=20%  Similarity=0.549  Sum_probs=16.8

Q ss_pred             ceecccchhhcc-hhHHHHHHHhhcC
Q 028830          113 TELCHLCNRYIR-LRERYNHESRCTG  137 (203)
Q Consensus       113 ~~~C~~C~~~f~-~~~l~~H~~~~~~  137 (203)
                      .|.|..||+.|. +..+.+|...+.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            367777777776 4577777766544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0052  Score=27.04  Aligned_cols=24  Identities=25%  Similarity=0.710  Sum_probs=17.1

Q ss_pred             cccCccCCCcCc-cccHHHH-HhhcC
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAHCS   32 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h~~   32 (203)
                      |-+|+.|..+.. +..|+.| +.|+.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            456777777776 7777777 77753

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.94  E-value=0.0075  Score=26.85  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=11.9

Q ss_pred             cccCcc--CCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDF--CEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~--C~~~f~-~~~l~~H~~~  108 (203)
                      ||.|.+  |.+.|. ...|.+|..+
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~t   26 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLT   26 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHH
T ss_pred             CcCcccccccccchhhhhhhhhhcc
Confidence            455544  555555 5555555544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0077  Score=26.48  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=15.5

Q ss_pred             cccCccCCCCCC-hhhHHHHHHHh
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEVC  109 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~~  109 (203)
                      |.+|+.|+.+.+ ...|+.|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            456777777766 77777777663

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0081  Score=26.31  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=13.8

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.|+.|+.... +++|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            56666666666 6666666665

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0069  Score=30.84  Aligned_cols=22  Identities=18%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             cccCccCCCcCc-cccHHHH-Hhh
Q 028830            9 TKICSHCDRAIP-SSNIDLH-FAH   30 (203)
Q Consensus         9 ~y~C~~C~~~f~-~~~l~~H-~~h   30 (203)
                      .|.|..|++.|+ ...|+.| -.|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            588999999999 9999999 555

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.23  E-value=0.013  Score=25.05  Aligned_cols=21  Identities=19%  Similarity=0.537  Sum_probs=11.5

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      |.|+.|=+.|. ..++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            45555555555 5555555544

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.68  E-value=0.01  Score=25.36  Aligned_cols=18  Identities=22%  Similarity=0.549  Sum_probs=15.1

Q ss_pred             ccCccCCCcCc-cccHHHH
Q 028830           10 KICSHCDRAIP-SSNIDLH   27 (203)
Q Consensus        10 y~C~~C~~~f~-~~~l~~H   27 (203)
                      |.|+.|.+.|+ +.++..|
T Consensus         2 ypcp~cfkeftrkdnm~ah   20 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAH   20 (26)
T ss_dssp             EECTTTCCEESCHHHHHHH
T ss_pred             cCCchhhHHhccccCceEE
Confidence            77888888888 8888887

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.019  Score=26.78  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      .|.|..||+.|. ...+.+|...
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            578888999998 8888888776

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.43  E-value=0.03  Score=27.27  Aligned_cols=27  Identities=30%  Similarity=0.646  Sum_probs=18.9

Q ss_pred             CCcccCccCCCcCccccHHHHHhhcCCCcccccccccc
Q 028830            7 ETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDM   44 (203)
Q Consensus         7 ~k~y~C~~C~~~f~~~~l~~H~~h~~~~~~~C~~C~~~   44 (203)
                      ++-|.|..||..           +.++.|-.|++|+..
T Consensus         3 ~~~~~C~vCG~i-----------~~g~~P~~CPvCg~~   29 (37)
T d1nnqa2           3 KKVYICPICGYT-----------AVDEAPEYCPVCGAP   29 (37)
T ss_dssp             SCEEECTTTCCE-----------EESCCCSBCTTTCCB
T ss_pred             CcEEECCCCCCE-----------ecCCCCCcCCCCCCc
Confidence            356788888875           445667778888754

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.37  E-value=0.035  Score=26.85  Aligned_cols=27  Identities=22%  Similarity=0.677  Sum_probs=19.8

Q ss_pred             CCcccCccCCCcCccccHHHHHhhcCCCcccccccccc
Q 028830            7 ETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDM   44 (203)
Q Consensus         7 ~k~y~C~~C~~~f~~~~l~~H~~h~~~~~~~C~~C~~~   44 (203)
                      ++-|.|..||..           |.++.|-.|+.|+..
T Consensus         3 ~~~~vC~vCGyi-----------~~g~~Pe~CPvCg~~   29 (36)
T d1yuza2           3 DKFHLCPICGYI-----------HKGEDFEKCPICFRP   29 (36)
T ss_dssp             CCEEECSSSCCE-----------EESSCCSBCTTTCCB
T ss_pred             CCEEECCCCCCE-----------eeCCCCCcCCCCCCc
Confidence            567888888885           556667788888753

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.27  E-value=0.02  Score=26.80  Aligned_cols=26  Identities=35%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             CCCcccCccCCCcCc-cccHHHH-H-hhc
Q 028830            6 DETTKICSHCDRAIP-SSNIDLH-F-AHC   31 (203)
Q Consensus         6 ~~k~y~C~~C~~~f~-~~~l~~H-~-~h~   31 (203)
                      |+..|+|..|.+.++ .+++-+| . .|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            566899999999999 9999999 4 453

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=0.038  Score=24.25  Aligned_cols=18  Identities=17%  Similarity=0.348  Sum_probs=11.9

Q ss_pred             CCCCCC-hhhHHHHHHHhC
Q 028830           93 CEFPLP-AVDLAEHQEVCG  110 (203)
Q Consensus        93 C~~~f~-~~~l~~H~~~~~  110 (203)
                      |++.|. .+.++.|+.+||
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            667776 666777766654

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.041  Score=30.15  Aligned_cols=37  Identities=16%  Similarity=0.422  Sum_probs=18.0

Q ss_pred             CCcccCccCCCcCccccHHHH-HhhcCCCccccccccccc
Q 028830            7 ETTKICSHCDRAIPSSNIDLH-FAHCSRNLERCKVCGDMV   45 (203)
Q Consensus         7 ~k~y~C~~C~~~f~~~~l~~H-~~h~~~~~~~C~~C~~~f   45 (203)
                      -..|.|+.|++.|+  .|..- +.-.....|.|..|+...
T Consensus        12 ~~~y~Cp~C~~~ys--~Lda~~L~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_          12 RASFKCPVCSSTFT--DLEANQLFDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             SSEEECSSSCCEEE--HHHHHHHEETTTTEEBCSSSCCBC
T ss_pred             CCceECCCCCCCcc--hhhHHHhcCcCCCeEEecCCCCEE
Confidence            34566666666654  22222 222233456666665443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.92  E-value=0.06  Score=27.18  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=11.0

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      .|-.|+.|+.... +.+|++|+..
T Consensus        23 qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHH
Confidence            3444555544444 4445554444

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.14  Score=22.57  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=12.8

Q ss_pred             cccCccCCCCCC-hhhHHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      .|.|..||+... ...++-|.-.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            356666666665 5555555544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.057  Score=25.35  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=18.1

Q ss_pred             cccC--ccCC---CcCc-cccHHHH-HhhcCC
Q 028830            9 TKIC--SHCD---RAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         9 ~y~C--~~C~---~~f~-~~~l~~H-~~h~~~   33 (203)
                      .|.|  ..|.   +.|. ...|..| +.|++|
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            4666  4565   4477 8889999 899875

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.79  E-value=0.044  Score=24.72  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             CcccC--ccCCCcCc-cccHHHH-HhhcCC
Q 028830            8 TTKIC--SHCDRAIP-SSNIDLH-FAHCSR   33 (203)
Q Consensus         8 k~y~C--~~C~~~f~-~~~l~~H-~~h~~~   33 (203)
                      |.|.|  +.|+..|. .-.|+.| -.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            45778  78999998 7889999 788875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.45  E-value=0.075  Score=24.43  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=12.9

Q ss_pred             cccCccCCCCCC-hhhHHHHHH
Q 028830           87 IVTCDFCEFPLP-AVDLAEHQE  107 (203)
Q Consensus        87 ~~~C~~C~~~f~-~~~l~~H~~  107 (203)
                      .|.|.-||-.|+ .+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            456666666666 666666644

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.95  E-value=0.05  Score=23.52  Aligned_cols=22  Identities=27%  Similarity=0.865  Sum_probs=16.0

Q ss_pred             ccC--ccCCCcCc-cccHHHH-Hhhc
Q 028830           10 KIC--SHCDRAIP-SSNIDLH-FAHC   31 (203)
Q Consensus        10 y~C--~~C~~~f~-~~~l~~H-~~h~   31 (203)
                      |.|  ..|++.|. ...|+.| ..|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            566  67888887 7778888 5664

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.57  E-value=0.077  Score=24.71  Aligned_cols=24  Identities=13%  Similarity=0.348  Sum_probs=14.1

Q ss_pred             CCcccCccCCCCCC-hhhHHHHHHH
Q 028830           85 QRIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        85 ~~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      +..|.|..|.+.+. .+++-+|.-+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHh
Confidence            34566666666666 6666666554

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=0.035  Score=30.45  Aligned_cols=13  Identities=31%  Similarity=0.721  Sum_probs=7.3

Q ss_pred             CccCccChhhhhH
Q 028830           60 PVACSQCSETMER   72 (203)
Q Consensus        60 ~~~C~~C~~~f~~   72 (203)
                      .|.|+.|++.|..
T Consensus        14 ~y~Cp~C~~~ys~   26 (62)
T d1vd4a_          14 SFKCPVCSSTFTD   26 (62)
T ss_dssp             EEECSSSCCEEEH
T ss_pred             ceECCCCCCCcch
Confidence            4555555555544

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.33  E-value=0.4  Score=32.41  Aligned_cols=45  Identities=31%  Similarity=0.495  Sum_probs=34.1

Q ss_pred             CCCCCChhhHHHHHHHhCCcceeccc----chhhcchhHHHHHHHhhcC
Q 028830           93 CEFPLPAVDLAEHQEVCGNRTELCHL----CNRYIRLRERYNHESRCTG  137 (203)
Q Consensus        93 C~~~f~~~~l~~H~~~~~~~~~~C~~----C~~~f~~~~l~~H~~~~~~  137 (203)
                      |...+....+..|.+.+.-+||.|+.    |+..-....|..|++..|.
T Consensus        13 C~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~   61 (190)
T d1k2fa_          13 CEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHK   61 (190)
T ss_dssp             CCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSC
T ss_pred             CCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCC
Confidence            77777777778888888888888853    6544456789999887775

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.91  E-value=0.12  Score=25.96  Aligned_cols=26  Identities=31%  Similarity=0.551  Sum_probs=20.4

Q ss_pred             CCCcccCccCCCcCc-cccHHHH--Hhhc
Q 028830            6 DETTKICSHCDRAIP-SSNIDLH--FAHC   31 (203)
Q Consensus         6 ~~k~y~C~~C~~~f~-~~~l~~H--~~h~   31 (203)
                      .+.|-.|+.|+.... +.+|.+|  ..|-
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            356788999999888 8899998  3554

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=84.85  E-value=0.18  Score=22.23  Aligned_cols=18  Identities=28%  Similarity=0.613  Sum_probs=12.6

Q ss_pred             ccC--ccCCCcCc-cccHHHH
Q 028830           10 KIC--SHCDRAIP-SSNIDLH   27 (203)
Q Consensus        10 y~C--~~C~~~f~-~~~l~~H   27 (203)
                      |.|  +.|+..|+ +.+++.|
T Consensus         3 f~cdsd~cdl~fttkanmkkh   23 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKH   23 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHH
T ss_pred             ccccCCCcceEEeehHHHHHH
Confidence            556  56777776 7777777

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.65  E-value=0.1  Score=28.98  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=18.0

Q ss_pred             CcccCccCCCCCC-hhhHHHHHHH
Q 028830           86 RIVTCDFCEFPLP-AVDLAEHQEV  108 (203)
Q Consensus        86 ~~~~C~~C~~~f~-~~~l~~H~~~  108 (203)
                      -.|.|..|++.|. ...|..|++.
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            3478888888888 8888888664

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.15  E-value=0.37  Score=22.60  Aligned_cols=25  Identities=20%  Similarity=0.618  Sum_probs=18.4

Q ss_pred             ccCccCCCCCC-hhhHHHHHHH-hCCc
Q 028830           88 VTCDFCEFPLP-AVDLAEHQEV-CGNR  112 (203)
Q Consensus        88 ~~C~~C~~~f~-~~~l~~H~~~-~~~~  112 (203)
                      --|..|+-.|+ .+.+..|.+. +..+
T Consensus         9 rYC~~CDI~Fn~~~T~~aHKk~YCss~   35 (36)
T d1fu9a_           9 KYCSTCDISFNYVKTYLAHKQFYCKNK   35 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHHHTSCCC
T ss_pred             hHHhhCCceehhHHHHHHHHHhcccCC
Confidence            45788888888 8888888776 5443

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=81.97  E-value=0.23  Score=32.61  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             cccCccCCCCCChhhHHHHHHHhCCc
Q 028830           87 IVTCDFCEFPLPAVDLAEHQEVCGNR  112 (203)
Q Consensus        87 ~~~C~~C~~~f~~~~l~~H~~~~~~~  112 (203)
                      -|+|..||+-.--.+|.+|++.||++
T Consensus       146 FYKCe~CgKYvDie~~~~H~k~HG~~  171 (218)
T d2czra1         146 FYKCEECGKYVDIENLEAHLREHGIK  171 (218)
T ss_dssp             EEECTTTCCEEEGGGHHHHHHTTTCC
T ss_pred             EeehhhcCceecHHHHHHHHHHcCcc
Confidence            47899998766677888898888764