Citrus Sinensis ID: 028843

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MAPTKSNNNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAPVNEEGGRQIANSEVNLDFDFSTEGLCGLDWVNKFLQLDDDHLWLTDQQR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHcccccccccHHHHHHHHHHHHHcccccccHccHHcccHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHccccHHHHcccccccccccccHHccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maptksnnnnnnndasgknvvnrgawtaeEDRKLTEYIEIHGakrwknvatesglnrcgkscRLRWLNylrpnikrgnisddEEDLILRLHKLLGSRWsliagrlpgrtdneiKNYWNSHLSkkinhkhktpqqpqqpattrlkvpentseiapvneeggrqiansevnldfdfsteglcgldwVNKFLQldddhlwltdqqr
Flexible Loop (DISEMBL)
maptksnnnnnnndasgknvvnrgaWTAEEDRKLTEYIEIhgakrwknvatesglnrcgkscrLRWLNYlrpnikrgnisddEEDLILRLHKLLGSrwsliagrlpgrtdNEIKNYWNSHLSKKINhkhktpqqpqqpattrlkvpentseiapvneeggrqiANSEVNLDFDFSTEGLCGLDWVNKFLQLDDDHLWLTDQQR
Low Complexity Region (SEG)
MAPTKSnnnnnnnDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTpqqpqqpATTRLKVPENTSEIAPVNEEGGRQIANSEVNLDFDFSTEGLCGLDWVNKFLQLDDDHLWLTDQQR
Disordered region (IsUnstruct)
***********************GAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNS***********************************************EVNLDFDFSTEGLCGLDWVNKFLQLDDDHLWLT****
Disordered Region (DISOPRED)
********************VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS******************************************************************LQLDDDHLWLTDQ**
Disordered Region (DISEMBL)
*********NNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI********************PENTSEIAPVNEEGGRQIANSEVNLDFDFSTEGLCGLDWVNKFLQLDDDHLWLTDQQR
Disordered Region (DISPRO)
***********NNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQP*****************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPTKSNNNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAPVNEEGGRQIANSEVNLDFDFSTEGLCGLDWVNKFLQLDDDHLWLTDQQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9LTF7	201	Transcription factor MYB8	yes	no	0.738	0.746	0.546	1e-41
Q9SEI0	203	Transcription factor WER	no	no	0.655	0.655	0.556	2e-41
P10290	273	Anthocyanin regulatory C1	N/A	no	0.527	0.391	0.710	6e-41
Q38850	249	Transcription repressor M	no	no	0.847	0.690	0.455	5e-40
Q96276	219	Transcription factor MYB2	no	no	0.507	0.470	0.660	2e-39
Q38851	236	Transcription repressor M	no	no	0.576	0.495	0.598	5e-39
Q9FJA2	258	Transcription factor TT2	no	no	0.517	0.406	0.695	7e-39
P20026	267	Myb-related protein Hv1 O	N/A	no	0.566	0.430	0.608	2e-38
Q9SZP1	282	Transcription repressor M	no	no	0.551	0.397	0.598	2e-38
P20025	255	Myb-related protein Zm38	N/A	no	0.655	0.521	0.541	3e-38

>sp|Q9LTF7|MYB82_ARATH Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 106/150 (70%)

Query: 17  GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKR 76
           GK+ V RG W  EED  L  Y+E HG   W +++  SGL R GKSCRLRW NYLRPNIKR
Sbjct: 8   GKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKR 67

Query: 77  GNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQ 136
           G++S  E+DLI+R+HKLLG+RWSLIAGRLPGRTDNE+KNYWN+HL+KK N + +   +  
Sbjct: 68  GSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPESI 127

Query: 137 QPATTRLKVPENTSEIAPVNEEGGRQIANS 166
             AT     P  ++E+   + EGG + +N+
Sbjct: 128 VGATPFTDKPVMSTELRRSHGEGGEEESNT 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEI0|WER_ARATH Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 98/133 (73%)

Query: 17  GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKR 76
           G N   +G WT EED+ L +Y++ HG   W  +A ++GL RCGKSCRLRW+NYL PN+KR
Sbjct: 12  GNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKR 71

Query: 77  GNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQ 136
           GN ++ EEDLI+RLHKLLG+RWSLIA R+PGRTDN++KNYWN+HLSKK+  K +  +Q  
Sbjct: 72  GNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSN 131

Query: 137 QPATTRLKVPENT 149
                ++ +P  T
Sbjct: 132 GDIVYQINLPNPT 144

Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC.

Arabidopsis thaliana (taxid: 3702)

>sp|P10290|MYBC_MAIZE Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1

 Score =  167 bits (422), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 88/107 (82%)

Query: 15  ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI 74
              K  V RGAWT++ED  L  Y++ HG  +W+ V  ++GL RCGKSCRLRWLNYLRPNI
Sbjct: 6   CCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNI 65

Query: 75  KRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHL 121
           +RGNIS DEEDLI+RLH+LLG+RWSLIAGRLPGRTDNEIKNYWNS L
Sbjct: 66  RRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTL 112

Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Zea mays (taxid: 4577)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score =  164 bits (414), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 86/189 (45%), Positives = 116/189 (61%), Gaps = 17/189 (8%)

Query: 18  KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
           K  + RG WT EED  L  +I+  G  RW+++   +GL RCGKSCRLRW+NYLRP++KRG
Sbjct: 20  KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 79

Query: 78  NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQ---- 133
            I+ DEEDLILRLH+LLG+RWSLIAGR+PGRTDNEIKNYWN+HL KK+  +   PQ    
Sbjct: 80  GITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP 139

Query: 134 -------QPQQPATTRLKVPE---NTSEIAPVNEEGGRQIANSEVNL---DFDFSTEGLC 180
                  +P++  +   K P    ++S        GG   + + +N+   +  +   G C
Sbjct: 140 LDANNIHKPEEEVSGGQKYPLEPISSSHTDDTTVNGGDGDSKNSINVFGGEHGYEDFGFC 199

Query: 181 GLDWVNKFL 189
             D  + FL
Sbjct: 200 YDDKFSSFL 208

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96276|MYB23_ARATH Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 85/103 (82%)

Query: 23  RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
           +G WT EED+ L +Y+  HG   W  +A ++GL RCGKSCRLRW+NYL PN+ RGN +D 
Sbjct: 14  KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQ 73

Query: 83  EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           EEDLI+RLHKLLG+RWSLIA R+PGRTDN++KNYWN+HLSKK+
Sbjct: 74  EEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 116

Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumlation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  160 bits (405), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 93/117 (79%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
            N+GAWT EED++L +YI  HG   W+++   +GL RCGKSCRLRW+NYLRP++KRGN +
Sbjct: 12  TNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFT 71

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQ 137
           DDE+ +I++LH LLG++WSLIAGRLPGRTDNEIKNYWN+H+ +K+      PQ  +Q
Sbjct: 72  DDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQ 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJA2|TT2_ARATH Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1

 Score =  160 bits (404), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 73/105 (69%), Positives = 87/105 (82%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
           +NRGAWT  ED+ L +YI  HG  +W  +  ++GL RCGKSCRLRW NYLRP IKRGNIS
Sbjct: 14  LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNIS 73

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
            DEE+LI+RLH LLG+RWSLIAGRLPGRTDNEIKN+WNS+L K++
Sbjct: 74  SDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRL 118

Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS).

Arabidopsis thaliana (taxid: 3702)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 92/115 (80%)

Query: 18  KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
           K   N+GAWT EED +LT YI+ HG   W+++   +GL RCGKSCRLRW+NYLRP++KRG
Sbjct: 9   KAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRG 68

Query: 78  NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTP 132
           N S +E++LI++LH LLG++WSLIAGRLPGRTDNEIKNYWN+H+ +K+  +   P
Sbjct: 69  NFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDP 123

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 92/112 (82%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
            N+GAWT EED +L  YI+ HG   W+++   +GL RCGKSCRLRW+NYLRP++KRGN +
Sbjct: 12  TNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFT 71

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTP 132
           ++E++LI++LH LLG++WSLIAGRLPGRTDNEIKNYWN+H+ +K+ ++   P
Sbjct: 72  EEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDP 123

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  157 bits (398), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/133 (54%), Positives = 96/133 (72%)

Query: 22  NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISD 81
           NRGAWT EED +L  YI  HG   W+++   +GL RCGKSCRLRW+NYLRP++KRGN + 
Sbjct: 13  NRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTA 72

Query: 82  DEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATT 141
           DE+DLI++LH LLG++WSLIA RLPGRTDNEIKNYWN+H+ +K+  +   P   +  A  
Sbjct: 73  DEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGIDPVTHRPIAAD 132

Query: 142 RLKVPENTSEIAP 154
            + V   + + +P
Sbjct: 133 AVTVTTVSFQPSP 145

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
2921332	198	MYB-like DNA-binding domain protein [Gos	0.891	0.914	0.653	3e-65
51872289	198	myb family transcription factor 2/fiber	0.891	0.914	0.648	9e-65
296083498	479	unnamed protein product [Vitis vinifera]	0.901	0.382	0.682	1e-64
62869603	198	myb family transcription factor 2 [Gossy	0.891	0.914	0.638	1e-62
356563344	197	PREDICTED: anthocyanin regulatory C1 pro	0.876	0.903	0.629	2e-58
224074181	180	predicted protein [Populus trichocarpa]	0.857	0.966	0.632	8e-58
356514386	201	PREDICTED: anthocyanin regulatory C1 pro	0.871	0.880	0.628	4e-57
225442138	203	PREDICTED: transcription factor WER [Vit	0.852	0.852	0.636	1e-56
147773779	197	hypothetical protein VITISV_001712 [Viti	0.871	0.898	0.604	1e-55
224054108	194	predicted protein [Populus trichocarpa]	0.832	0.871	0.611	2e-55

>gi|2921332|gb|AAC04716.1| MYB-like DNA-binding domain protein [Gossypium hirsutum]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/202 (65%), Positives = 152/202 (75%), Gaps = 21/202 (10%)

Query: 1   MAPTKSNNNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGK 60
           MAP K+           K V N+G+WTAEEDR+L +YIEIHGAKRWK +A +SGLNRCGK
Sbjct: 1   MAPKKA--------GVSKRVFNKGSWTAEEDRRLAKYIEIHGAKRWKTIAIKSGLNRCGK 52

Query: 61  SCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSH 120
           SCRLRWLNYLRPNIKRGNISD+EEDLI+RLHKLLG+RWSLIAGRLPGRTDNEIKNYWNSH
Sbjct: 53  SCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSH 112

Query: 121 LSKK-INHKHKTPQQPQQPATTRLKVPENTSEIAPVNEE----GGRQIANSEVNLD---- 171
           LSKK INH  +T    +Q +++   VP    E   + EE    G  +I NSE ++D    
Sbjct: 113 LSKKMINHDVRT----EQTSSSEQIVPHKAWETVQMEEEEVVKGSDEIENSEFSIDVDEF 168

Query: 172 FDFSTEGLCGLDWVNKFLQLDD 193
           FDFSTEG  GLDWVNKFL+LDD
Sbjct: 169 FDFSTEGCFGLDWVNKFLELDD 190

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51872289|gb|AAU12248.1| myb family transcription factor 2/fiber factor 1 [Gossypium arboreum] gi|62869605|gb|AAY17953.1| myb family transcription factor 2 [Gossypium hirsutum]

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 131/202 (64%), Positives = 151/202 (74%), Gaps = 21/202 (10%)

Query: 1   MAPTKSNNNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGK 60
           MAP K        D   K V N+G+WTAEEDR+L +YIEIHGAKRWK +A +SGLNRCGK
Sbjct: 1   MAPKK--------DGVSKRVFNKGSWTAEEDRRLAKYIEIHGAKRWKTIAIKSGLNRCGK 52

Query: 61  SCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSH 120
           SCRLRWLNYLRPNIKRGNISD+EEDLI+RLHKLLG+RWSLIAGRLPGRTDNEIKNYWNSH
Sbjct: 53  SCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSH 112

Query: 121 LSKK-INHKHKTPQQPQQPATTRLKVPENTSEIAPVNEE----GGRQIANSEVNLD---- 171
           LSKK INH  +T    +Q +++   VP    E   + EE    G  +I NSE ++D    
Sbjct: 113 LSKKIINHDVRT----EQTSSSEQIVPHKAWETVQMEEEEVVKGSDEIENSEFSIDVDEF 168

Query: 172 FDFSTEGLCGLDWVNKFLQLDD 193
           FDF+TEG   LDWVNKFL+LDD
Sbjct: 169 FDFTTEGCFSLDWVNKFLELDD 190

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083498|emb|CBI23467.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 147/186 (79%), Gaps = 3/186 (1%)

Query: 18  KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
           K V+N+GAWT+EEDRKL EYIE+HGAKRWK VA +SGLNRCGKSCRLRWLNYLRPNIKRG
Sbjct: 296 KKVMNKGAWTSEEDRKLAEYIEVHGAKRWKTVAFKSGLNRCGKSCRLRWLNYLRPNIKRG 355

Query: 78  NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQ 137
           NISDDEEDLILRLHKLLG+RWSLIAGRLPGRTDNEIKNYWNSHLSKK+  K    +    
Sbjct: 356 NISDDEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLQQKENKTETSTA 415

Query: 138 PATTRLKVPENTSEIAPVNEEG-GRQIANSEVNLDFDFSTEGLCGLDWVNKFLQLDDDHL 196
             T   K PE+ +E +   ++G G    N +VN  FDFS EG CGL+WVNKFL+LD++  
Sbjct: 416 KETAPQK-PEDIAEGSGEEDKGSGYPDINFDVNEFFDFSAEGSCGLEWVNKFLELDEES- 473

Query: 197 WLTDQQ 202
           WL  ++
Sbjct: 474 WLAKKR 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62869603|gb|AAY17952.1| myb family transcription factor 2 [Gossypium barbadense]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 149/202 (73%), Gaps = 21/202 (10%)

Query: 1   MAPTKSNNNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGK 60
           MAP K        D   K V N+G+WTAEEDR+L +YIEIHGAKRWK +A +SGLNRCGK
Sbjct: 1   MAPKK--------DGVSKRVFNKGSWTAEEDRRLAKYIEIHGAKRWKTIAIKSGLNRCGK 52

Query: 61  SCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSH 120
           SC LRWLNYLRPNIKRGNISD+EEDLI+RLHKLLG+RWSLIAGRL GRTDNEIKNYWNSH
Sbjct: 53  SCWLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAGRLLGRTDNEIKNYWNSH 112

Query: 121 LSKK-INHKHKTPQQPQQPATTRLKVPENTSEIAPVNEE----GGRQIANSEVNLD---- 171
           LSKK INH  +T    +Q +++   VP    E   + EE    G  +I NSE ++D    
Sbjct: 113 LSKKIINHDVRT----EQTSSSEQIVPHKAWETVQMEEEEVVKGSDEIENSEFSIDVDEF 168

Query: 172 FDFSTEGLCGLDWVNKFLQLDD 193
           FDF+TEG   LDWVNKFL+LDD
Sbjct: 169 FDFTTEGCFSLDWVNKFLELDD 190

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563344|ref|XP_003549924.1| PREDICTED: anthocyanin regulatory C1 protein-like [Glycine max]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/189 (62%), Positives = 139/189 (73%), Gaps = 11/189 (5%)

Query: 11  NNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 70
           N+   + K  +NRGAWT EEDRKL + IEIHGAKRWK VA +SGLNRCGKSCRLRWLNYL
Sbjct: 6   NDGTITSKRAMNRGAWTPEEDRKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYL 65

Query: 71  RPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHK 130
           RPNIKRGNISD+EEDLILRLH+LLG+RWSLIAGRLPGRTDNEIKNYWNSHL KK+N K +
Sbjct: 66  RPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKVE 125

Query: 131 TPQQ-------PQQPATTRLKVPENTSEIAPVNEEGGRQIANSEVNLDFDFSTEGLCGLD 183
            P+         Q  A     + EN  EI   NE     +++ +VN  F+FS E   G D
Sbjct: 126 KPESYTRHEIIGQNDAGDNRAMSENEVEI---NESSNLDVSSFDVNEFFNFSEESF-GFD 181

Query: 184 WVNKFLQLD 192
           W+NK+L+LD
Sbjct: 182 WLNKYLELD 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074181|ref|XP_002304289.1| predicted protein [Populus trichocarpa] gi|222841721|gb|EEE79268.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 117/185 (63%), Positives = 136/185 (73%), Gaps = 11/185 (5%)

Query: 1   MAPTKSNNNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGK 60
           MAP      N   DAS K V+++GAWTAEED KL   +E+HGAKRWK VA +SGLNRCGK
Sbjct: 1   MAP-----KNTVTDASTKKVMSKGAWTAEEDNKLAHCVEVHGAKRWKTVALKSGLNRCGK 55

Query: 61  SCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSH 120
           SCRLRW+NYLRPNIKRGNIS DEEDLI+RLHKLLG+RWSLIAGRLPGRTDNEIKNYWNSH
Sbjct: 56  SCRLRWMNYLRPNIKRGNISCDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSH 115

Query: 121 LSKKINHKHKTPQQPQQPATTRLKVPENTSEIAPVNEEGGRQIA------NSEVNLDFDF 174
           LSKKI  + +  + P QP+T    + + TS+   V EEG  + A      N +V+  FDF
Sbjct: 116 LSKKIIDQTQKEKMPDQPSTPLATMHQKTSDAIQVEEEGSAREAWNLETGNFDVDEFFDF 175

Query: 175 STEGL 179
           S EG 
Sbjct: 176 SAEGF 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514386|ref|XP_003525887.1| PREDICTED: anthocyanin regulatory C1 protein-like [Glycine max]

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 139/191 (72%), Gaps = 14/191 (7%)

Query: 11  NNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 70
           N+   + K  +NRGAWT EEDRKL + IEIHG KRWK VA +SGLNRCGKSCRLRWLNYL
Sbjct: 6   NDGTITSKRAMNRGAWTPEEDRKLAQCIEIHGPKRWKTVAIKSGLNRCGKSCRLRWLNYL 65

Query: 71  RPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHK 130
           RPNIKRGNISD+EEDLILRLH+LLG+RWSLIAGRLPGRTDNEIKNYWNSHL KK+N K +
Sbjct: 66  RPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKVE 125

Query: 131 TPQ---------QPQQPATTRLKVPENTSEIAPVNEEGGRQIANSEVNLDFDFSTEGLCG 181
            P+         Q  Q A     + EN  EI   NE G   ++  +VN  F+FS E   G
Sbjct: 126 KPESSTRHEIIGQNDQNAGDNRAMSENEVEI---NESGNLDVS-LDVNEFFNFSEESF-G 180

Query: 182 LDWVNKFLQLD 192
            DW+NK+L+LD
Sbjct: 181 FDWLNKYLELD 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442138|ref|XP_002273991.1| PREDICTED: transcription factor WER [Vitis vinifera] gi|297743011|emb|CBI35878.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 134/179 (74%), Gaps = 6/179 (3%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
           +NRGAWTAEEDRKL E IE+HGAKRWK +AT +GLNRCGKSCRLRW+NYLRPNIKRGNIS
Sbjct: 19  MNRGAWTAEEDRKLAEVIEVHGAKRWKMIATTAGLNRCGKSCRLRWMNYLRPNIKRGNIS 78

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPAT 140
           D EEDLILRLHKLLG+RWSLIAGRLPGRTDNEIKNYWNSHLSKKI  + ++    +  + 
Sbjct: 79  DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQEKQSGGSTRGCSK 138

Query: 141 TRLKVPENTSEIAPVNEE----GGRQIANSEVNLD--FDFSTEGLCGLDWVNKFLQLDD 193
            +         +  V  E    GG Q +    N+D  FDFS EG   L+WV++FL+LD+
Sbjct: 139 LQRTRVVEEVNVVEVKREDTSNGGDQCSKMSFNVDEFFDFSEEGPLNLEWVSQFLELDE 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773779|emb|CAN65256.1| hypothetical protein VITISV_001712 [Vitis vinifera]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 136/187 (72%), Gaps = 10/187 (5%)

Query: 18  KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
           K   NRGAWTAEED KL + I +HGAKRWK VA ++GL RCGKSCRLRW+NYLRPNIKRG
Sbjct: 10  KKEANRGAWTAEEDYKLAQVIAVHGAKRWKCVAMKAGLKRCGKSCRLRWMNYLRPNIKRG 69

Query: 78  NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQ---- 133
           NISD E+DLILRLHKLLG+RWSLIAGRLPGRTDNEIKNYWNSHLSKKI  K K  +    
Sbjct: 70  NISDQEQDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQKEKQSRSSTT 129

Query: 134 ---QPQQPATTRLKVPENTSEIAPVNEEGGRQIANSEV-NLDFDFSTEGLCGLDWVNKFL 189
              +PQ+     ++  +N SE   V  +G      S V +  FD+S+EG   L+W++KFL
Sbjct: 130 VECRPQKTKVMEMESVDNGSE--RVASKGDEDSKTSFVGDESFDYSSEGPLNLEWMSKFL 187

Query: 190 QLDDDHL 196
           ++D+  L
Sbjct: 188 EMDEAWL 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054108|ref|XP_002298097.1| predicted protein [Populus trichocarpa] gi|222845355|gb|EEE82902.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 135/180 (75%), Gaps = 11/180 (6%)

Query: 22  NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISD 81
           N+GAWTAEEDRKL E I  HGAKRW+ +A+++ LNRCGKSCRLRWLNYLRPNIKRGNISD
Sbjct: 17  NKGAWTAEEDRKLAEVIATHGAKRWRTIASKAALNRCGKSCRLRWLNYLRPNIKRGNISD 76

Query: 82  DEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATT 141
            EEDLILRLHKLLG+RWSLIAGRLPGRTDNEIKNYWNSHLSKKIN K K  +   +    
Sbjct: 77  QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKINKKGKQIEASNRECQ- 135

Query: 142 RLKVPENTSEIAPVNEE------GGRQIANSEVNLD--FDFSTEGLCGLDWVNKFLQLDD 193
             K+ + T EI+   +E      G  + +N   N+D  FDF+ E    ++W+++FL++D+
Sbjct: 136 --KIEKKTVEISLELKEDNKPHNGSEEGSNVNFNIDDLFDFTDEDTLNMEWMSRFLEMDE 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:504955052	201	MYB82 "myb domain protein 82"	0.738	0.746	0.546	2.5e-42
TAIR|locus:2185470	203	MYB66 "myb domain protein 66"	0.832	0.832	0.482	1.1e-41
TAIR|locus:2169538	258	TT2 "TRANSPARENT TESTA 2" [Ara	0.517	0.406	0.695	2.9e-39
TAIR|locus:2170553	219	MYB23 "myb domain protein 23"	0.536	0.497	0.636	4.8e-39
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.512	0.440	0.644	9.9e-39
TAIR|locus:2092820	249	MYB5 "myb domain protein 5" [A	0.517	0.421	0.676	1.3e-38
TAIR|locus:2009452	257	MYB3 "myb domain protein 3" [A	0.517	0.408	0.628	3.4e-38
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.546	0.412	0.612	5.5e-38
TAIR|locus:2131576	274	MYB32 "myb domain protein 32"	0.546	0.405	0.621	5.5e-38
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.512	0.368	0.634	5.5e-38

TAIR|locus:504955052 MYB82 "myb domain protein 82" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 82/150 (54%), Positives = 105/150 (70%)

Query:    17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKR 76
             GK+ V RG W  EED  L  Y+E HG   W +++  SGL R GKSCRLRW NYLRPNIKR
Sbjct:     8 GKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKR 67

Query:    77 GNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTXXXXX 136
             G++S  E+DLI+R+HKLLG+RWSLIAGRLPGRTDNE+KNYWN+HL+KK N + +      
Sbjct:    68 GSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPESI 127

Query:   137 XXATTRLKVPENTSEIAPVNEEGGRQIANS 166
               AT     P  ++E+   + EGG + +N+
Sbjct:   128 VGATPFTDKPVMSTELRRSHGEGGEEESNT 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2185470 MYB66 "myb domain protein 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 84/174 (48%), Positives = 111/174 (63%)

Query:    17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKR 76
             G N   +G WT EED+ L +Y++ HG   W  +A ++GL RCGKSCRLRW+NYL PN+KR
Sbjct:    12 GNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKR 71

Query:    77 GNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTXXXXX 136
             GN ++ EEDLI+RLHKLLG+RWSLIA R+PGRTDN++KNYWN+HLSKK+  K +      
Sbjct:    72 GNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSN 131

Query:   137 XXATTRLKVPE--NTSEIAPV-NEEGGRQIANSEVNLDFDFSTEGLCGLDWVNK 187
                  ++ +P    TSE   + N      I   E+  D   S   L  L WV++
Sbjct:   132 GDIVYQINLPNPTETSEETKISNIVDNNNILGDEIQEDHQGSNY-LSSL-WVHE 183

GO:0003677 "DNA binding" evidence=IEA;ISS;IPI

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045165 "cell fate commitment" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0001708 "cell fate specification" evidence=RCA

GO:0009913 "epidermal cell differentiation" evidence=RCA

TAIR|locus:2169538 TT2 "TRANSPARENT TESTA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 73/105 (69%), Positives = 87/105 (82%)

Query:    21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
             +NRGAWT  ED+ L +YI  HG  +W  +  ++GL RCGKSCRLRW NYLRP IKRGNIS
Sbjct:    14 LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNIS 73

Query:    81 DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
              DEE+LI+RLH LLG+RWSLIAGRLPGRTDNEIKN+WNS+L K++
Sbjct:    74 SDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRL 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010023 "proanthocyanidin biosynthetic process" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

TAIR|locus:2170553 MYB23 "myb domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 70/110 (63%), Positives = 87/110 (79%)

Query:    23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
             +G WT EED+ L +Y+  HG   W  +A ++GL RCGKSCRLRW+NYL PN+ RGN +D 
Sbjct:    14 KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQ 73

Query:    83 EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKIN-HKHKT 131
             EEDLI+RLHKLLG+RWSLIA R+PGRTDN++KNYWN+HLSKK+    H T
Sbjct:    74 EEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGDHST 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010026 "trichome differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010091 "trichome branching" evidence=IMP

GO:0048629 "trichome patterning" evidence=IGI

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0001708 "cell fate specification" evidence=RCA

GO:0009913 "epidermal cell differentiation" evidence=RCA

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 67/104 (64%), Positives = 89/104 (85%)

Query:    22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISD 81
             N+GAWT EED++L +YI  HG   W+++   +GL RCGKSCRLRW+NYLRP++KRGN +D
Sbjct:    13 NKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTD 72

Query:    82 DEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
             DE+ +I++LH LLG++WSLIAGRLPGRTDNEIKNYWN+H+ +K+
Sbjct:    73 DEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2092820 MYB5 "myb domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 71/105 (67%), Positives = 87/105 (82%)

Query:    21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
             + RG WT EED  L  +I+  G  RW+++   +GL RCGKSCRLRW+NYLRP++KRG I+
Sbjct:    23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query:    81 DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
              DEEDLILRLH+LLG+RWSLIAGR+PGRTDNEIKNYWN+HL KK+
Sbjct:    83 SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0009845 "seed germination" evidence=NAS

GO:0010026 "trichome differentiation" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0048354 "mucilage biosynthetic process involved in seed coat development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 66/105 (62%), Positives = 90/105 (85%)

Query:    21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
             +N+GAWT EED+ L +YI  HG   W+++   +GL RCGKSCRLRW+NYLRP++KRGN +
Sbjct:    12 MNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFT 71

Query:    81 DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
             ++E++LI++LH LLG++WSLIAGRLPGRTDNEIKNYWN+H+ +K+
Sbjct:    72 EEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0009800 "cinnamic acid biosynthetic process" evidence=TAS

GO:0009892 "negative regulation of metabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 68/111 (61%), Positives = 90/111 (81%)

Query:    18 KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
             K  +N+GAWT EED +L  YI+ HG   W+++   +GL RCGKSCRLRW+NYLRP++KRG
Sbjct:     9 KEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINYLRPDLKRG 68

Query:    78 NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHK 128
             N + DE++LI++LH LLG++WSLIA RLPGRTDNEIKNYWN+H+ +K+  K
Sbjct:    69 NFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSK 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2131576 MYB32 "myb domain protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 69/111 (62%), Positives = 90/111 (81%)

Query:    18 KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
             K+  N+GAWT EED KL  YI+ HG   W+++   +GL RCGKSCRLRW+NYLRP++KRG
Sbjct:     9 KDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRG 68

Query:    78 NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHK 128
             N + +E+DLI++LH LLG++WSLIA RLPGRTDNEIKNYWN+H+ +K+  K
Sbjct:    69 NFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRK 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 66/104 (63%), Positives = 89/104 (85%)

Query:    22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISD 81
             N+GAWT EED +L  YI+ HG   W+++   +GL RCGKSCRLRW+NYLRP++KRGN ++
Sbjct:    13 NKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72

Query:    82 DEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
             +E++LI++LH LLG++WSLIAGRLPGRTDNEIKNYWN+H+ +K+
Sbjct:    73 EEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LTF7	MYB82_ARATH	No assigned EC number	0.5466	0.7389	0.7462	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009522001 SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (195 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	4e-50
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	1e-41
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-14
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-12
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-05

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  162 bits (411), Expect = 4e-50
 Identities = 75/127 (59%), Positives = 94/127 (74%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
           + RG WT EED  L  +I+  G  RW+++   +GL RCGKSCRLRW+NYLRP++KRG I+
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPAT 140
            DEEDLILRLH+LLG+RWSLIAGR+PGRTDNEIKNYWN+HL KK+  +   PQ  +    
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDA 142

Query: 141 TRLKVPE 147
             +  PE
Sbjct: 143 NNIHKPE 149

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  145 bits (368), Expect = 1e-41
 Identities = 69/155 (44%), Positives = 95/155 (61%), Gaps = 6/155 (3%)

Query: 18  KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
           K  + +G W+ EED KL  +I  +G   W +V  ++GL RCGKSCRLRW+NYLRP++KRG
Sbjct: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 78  NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTP--QQP 135
             S  EE+LI+ LH +LG+RWS IA +LPGRTDNEIKN WNS L KK+  +   P   +P
Sbjct: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKP 128

Query: 136 QQPATTRLKVPENTSEIAPVNEEGGRQIANSEVNL 170
                      E+ +       +    + ++E+NL
Sbjct: 129 LSEVENG----EDKNPPTDDKSDKASSVVSNELNL 159

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 63.7 bits (156), Expect = 4e-14
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 70
          RG WT EED  L E ++ HG   W  +A      R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
              G+W   ED  L   ++  G   W  VA+       GK    RW N+L P +K+ N S
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWS 76

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNS 119
           ++E++ ++ L K LG++WS IA     RT  +    + +
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVN 115

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 58.7 bits (143), Expect = 3e-12
 Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 76  RGNISDDEEDLILRLHKLLGSR-WSLIAGRLPGRTDNEIKNYWNSHL 121
           RG  + +E++L++   K  G+  WS IA  LPGRTDN+ KN WN++L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
          +G WT EED  L E ++ +G   W+ +A E    R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.5 bits (132), Expect = 9e-11
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 25 AWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 70
           WT EED  L E ++ +G   W+ +A E    R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 26 WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEED 85
          WT EED KL + +E +G   WK +A E  L R   +CR RW   LRP   RG  + +E+ 
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 76  RGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSK 123
           +G  +++E++L++ L K  G   W  IA  LPGRT  + +  W + L  
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 49.1 bits (118), Expect = 9e-09
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 80  SDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHL 121
           +++E++L+L   K  G   W  IA  LPGRT  + +  W + L
Sbjct: 3   TEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 80  SDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINH 127
           +++E++ +L+L +  G+ W  IA  L GRT +  ++ W   L  K + 
Sbjct: 2   TEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.89
PLN03212	249	Transcription repressor MYB5; Provisional	99.81
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.8
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.75
PLN03091	459	hypothetical protein; Provisional	99.75
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.74
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.7
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.67
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.61
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.54
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.53
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.52
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.33
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.32
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.23
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.22
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.13
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.12
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.09
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.24
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.14
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.96
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.84
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.83
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.53
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.52
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.42
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.39
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.34
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.3
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.18
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.16
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.07
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.98
PRK13923	170	putative spore coat protein regulator protein YlbO	96.9
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.85
PRK13923	170	putative spore coat protein regulator protein YlbO	96.73
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.53
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.28
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.06
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.64
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.5
KOG2656	445	consensus DNA methyltransferase 1-associated prote	93.73
KOG4282	345	consensus Transcription factor GT-2 and related pr	92.84
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	92.78
KOG1194	534	consensus Predicted DNA-binding protein, contains	90.75
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	90.03
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	89.65
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.17
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	83.93
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	83.71
KOG4282	345	consensus Transcription factor GT-2 and related pr	83.61
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	83.5
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	83.35

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=3.1e-36  Score=248.16  Aligned_cols=124  Identities=60%  Similarity=1.114  Sum_probs=115.4

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHh
Q 028843           15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLL   94 (203)
Q Consensus        15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~   94 (203)
                      -|.|+.+++++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++++..|
T Consensus        17 cc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~   96 (249)
T PLN03212         17 CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLL   96 (249)
T ss_pred             CcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhc
Confidence            38899999999999999999999999998899999999966999999999999999999999999999999999999999


Q ss_pred             CCchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCch
Q 028843           95 GSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQP  138 (203)
Q Consensus        95 G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l  138 (203)
                      |++|+.||+.|||||+++||+||+.++++.+......++...++
T Consensus        97 GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~  140 (249)
T PLN03212         97 GNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL  140 (249)
T ss_pred             cccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCC
Confidence            99999999999999999999999999999877766665554443

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=2.3e-34  Score=240.87  Aligned_cols=112  Identities=58%  Similarity=1.033  Sum_probs=106.9

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCc
Q 028843           18 KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSR   97 (203)
Q Consensus        18 ~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~   97 (203)
                      ++.+.||+||+|||++|+++|++||.++|..||+.+|++|++++||.||.|||+|++++|.||+|||.+|++++..+|++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            44566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHhhcccccCCC
Q 028843           98 WSLIAGRLPGRTDNEIKNYWNSHLSKKINHKH  129 (203)
Q Consensus        98 W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~  129 (203)
                      |+.||++|||||++.|||+|+..+++++....
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999998887654

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=4.6e-34  Score=250.88  Aligned_cols=113  Identities=56%  Similarity=1.041  Sum_probs=108.3

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHh
Q 028843           15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLL   94 (203)
Q Consensus        15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~   94 (203)
                      -|.|..+++|+||+|||++|+++|.+||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++++++|
T Consensus         6 Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~   85 (459)
T PLN03091          6 CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVL   85 (459)
T ss_pred             cCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHh
Confidence            37889999999999999999999999999999999999877999999999999999999999999999999999999999


Q ss_pred             CCchhhhhccCCCCCHHHHHHHHHHhhcccccC
Q 028843           95 GSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINH  127 (203)
Q Consensus        95 G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~  127 (203)
                      |++|+.||+.|||||+++||+||+.++++++..
T Consensus        86 GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~  118 (459)
T PLN03091         86 GNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (459)
T ss_pred             CcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887653

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.89  E-value=5.8e-24  Score=193.16  Aligned_cols=143  Identities=21%  Similarity=0.312  Sum_probs=129.1

Q ss_pred             CCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchh---------------------------
Q 028843           13 NDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLR---------------------------   65 (203)
Q Consensus        13 ~~~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R---------------------------   65 (203)
                      +..+..|.++|.-|++|||++|..+...+|..+|..||..+|++|+..||..|                           
T Consensus       243 W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~  322 (939)
T KOG0049|consen  243 WYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKI  322 (939)
T ss_pred             HhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence            34567899999999999999999999999988999999999877888888744                           


Q ss_pred             ---------------------------hhhcccCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHH
Q 028843           66 ---------------------------WLNYLRPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYW  117 (203)
Q Consensus        66 ---------------------------w~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw  117 (203)
                                                 |...|+|.+++|+||++||.+|+.+|.+|| ..|.+|...+|||++.|||.||
T Consensus       323 ~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY  402 (939)
T KOG0049|consen  323 TSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERY  402 (939)
T ss_pred             hhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHH
Confidence                                       445566999999999999999999999999 5699999999999999999999


Q ss_pred             HHhhcccccCCCCCCCCCCchhhhhhhCCC-CCCccccc
Q 028843          118 NSHLSKKINHKHKTPQQPQQPATTRLKVPE-NTSEIAPV  155 (203)
Q Consensus       118 ~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~-~~s~i~~~  155 (203)
                      .+.|....+.+.|+-.++.+|+..+..||. +|..+|..
T Consensus       403 ~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~  441 (939)
T KOG0049|consen  403 TNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAML  441 (939)
T ss_pred             HHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHH
Confidence            999999999999999999999999999996 88887754

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.81  E-value=1.8e-20  Score=154.92  Aligned_cols=98  Identities=17%  Similarity=0.244  Sum_probs=88.4

Q ss_pred             hccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccC-CCCCHHHHHHHHHHhhcccccCCCC
Q 028843           53 SGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRL-PGRTDNEIKNYWNSHLSKKINHKHK  130 (203)
Q Consensus        53 ~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l-~~Rt~~q~k~Rw~~~l~~~~~~~~~  130 (203)
                      ++ .|+..-|       .++.+++++||+|||++|+++|++|| .+|..||+.+ ++||+.||+.||.++|+|.+++++|
T Consensus        10 ~~-~~~~pcc-------~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW   81 (249)
T PLN03212         10 VS-KKTTPCC-------TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI   81 (249)
T ss_pred             CC-CCCCCCc-------ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC
Confidence            44 5666655       34688999999999999999999999 6899999998 6999999999999999999999999


Q ss_pred             CCCCCCchhhhhhhCCCCCCcccccCCc
Q 028843          131 TPQQPQQPATTRLKVPENTSEIAPVNEE  158 (203)
Q Consensus       131 t~~e~~~l~~~~~~~~~~~s~i~~~~~~  158 (203)
                      |.+|+..|+..+..+|++|+.||....+
T Consensus        82 T~EED~lLlel~~~~GnKWs~IAk~LpG  109 (249)
T PLN03212         82 TSDEEDLILRLHRLLGNRWSLIAGRIPG  109 (249)
T ss_pred             ChHHHHHHHHHHHhccccHHHHHhhcCC
Confidence            9999999999999999999999987533

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.80  E-value=5.3e-20  Score=167.55  Aligned_cols=117  Identities=26%  Similarity=0.336  Sum_probs=104.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCC
Q 028843            1 MAPTKSNNNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS   80 (203)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT   80 (203)
                      |..++++..-+.+.-.-.|.+++|.||.+||.+|+.+|.+||.++|-+|-+.+| ||+..|||+||.+.|+...+.+.||
T Consensus       338 mpgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~  416 (939)
T KOG0049|consen  338 MPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWT  416 (939)
T ss_pred             cCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCcee
Confidence            444555555566666778999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhC-CchhhhhccCCCCCHH---HHHHHHH
Q 028843           81 DDEEDLILRLHKLLG-SRWSLIAGRLPGRTDN---EIKNYWN  118 (203)
Q Consensus        81 ~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~---q~k~Rw~  118 (203)
                      -.||+.|+.+|.+|| ++|.+||..||+||..   .||-|+.
T Consensus       417 l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~  458 (939)
T KOG0049|consen  417 LVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLI  458 (939)
T ss_pred             ecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHH
Confidence            999999999999999 8899999999999994   4555554

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.75  E-value=3.3e-19  Score=149.41  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=81.5

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCC
Q 028843           72 PNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP-GRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENT  149 (203)
Q Consensus        72 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~-~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~  149 (203)
                      +.+.+||||+|||.+|+++|++|| .+|..||+.++ +|++++||-||.++|+|.++++.||.+|+..++.++..+|++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999 66999999998 9999999999999999999999999999999999999999999


Q ss_pred             CcccccCCc
Q 028843          150 SEIAPVNEE  158 (203)
Q Consensus       150 s~i~~~~~~  158 (203)
                      +.||..-.+
T Consensus        85 s~IA~~LPG   93 (238)
T KOG0048|consen   85 SLIAGRLPG   93 (238)
T ss_pred             HHHHhhCCC
Confidence            999987443

>PLN03091 hypothetical protein; Provisional

Probab=99.75  E-value=5.9e-19  Score=155.83  Aligned_cols=89  Identities=17%  Similarity=0.240  Sum_probs=83.0

Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccC-CCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCC
Q 028843           70 LRPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRL-PGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPE  147 (203)
Q Consensus        70 l~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l-~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~  147 (203)
                      .++.+++++||+|||++|+++|.+|| .+|..||+.+ ++|+++|||.||.++|++.+++++|+++|+..|+.++..+|.
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            34678999999999999999999999 5799999988 599999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCc
Q 028843          148 NTSEIAPVNEE  158 (203)
Q Consensus       148 ~~s~i~~~~~~  158 (203)
                      +|+.|+....+
T Consensus        88 KWskIAk~LPG   98 (459)
T PLN03091         88 RWSQIAAQLPG   98 (459)
T ss_pred             chHHHHHhcCC
Confidence            99999986533

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.74  E-value=1.8e-18  Score=114.90  Aligned_cols=60  Identities=45%  Similarity=0.844  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHH
Q 028843           26 WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLI   87 (203)
Q Consensus        26 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~L   87 (203)
                      ||++||++|+.+|..|| .+|..||..|| +|++.+|+.||.++|.|.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 68999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.70  E-value=2.4e-17  Score=149.46  Aligned_cols=134  Identities=26%  Similarity=0.422  Sum_probs=115.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC
Q 028843           17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS   96 (203)
Q Consensus        17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~   96 (203)
                      .....+.|.|+..||+.|..+|+.+|+.+|..||..+. .|+++||+.||.++++|.++++.|+.+||..|+.+..++|.
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            45677889999999999999999999999999999998 69999999999999999999999999999999999999999


Q ss_pred             chhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcc
Q 028843           97 RWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEI  152 (203)
Q Consensus        97 ~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i  152 (203)
                      .|+.||..+++|++.+|.+||...+..... ..++..+..........+...++..
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~~~~~~~  147 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFNENSARR  147 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchhhhhhhh
Confidence            999999999999999999999998887766 5555555544444444444444433

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=2.6e-17  Score=146.92  Aligned_cols=107  Identities=27%  Similarity=0.566  Sum_probs=100.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchh
Q 028843           20 VVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWS   99 (203)
Q Consensus        20 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~   99 (203)
                      .++.|.|+.-||+.|..+|.+||.+.|.+||+.+. -.+++||+.||..+++|.+++..|+.+||.+|+.+.+.+...|.
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr   82 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR   82 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence            35789999999999999999999999999999998 88999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHhhcccccCC
Q 028843          100 LIAGRLPGRTDNEIKNYWNSHLSKKINHK  128 (203)
Q Consensus       100 ~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~  128 (203)
                      .||..| ||+++||-.||++++.......
T Consensus        83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   83 TIADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             hHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            999998 9999999999999988765443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.61  E-value=2.2e-16  Score=104.88  Aligned_cols=60  Identities=33%  Similarity=0.564  Sum_probs=53.3

Q ss_pred             CChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCch
Q 028843           79 ISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQP  138 (203)
Q Consensus        79 WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l  138 (203)
                      ||++||++|+++|..||.+|..||+.|+.||+.+|++||...|.+.++.++|+++|+..|
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999999999999999669999999999999999999999999887643

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.54  E-value=2.7e-15  Score=95.43  Aligned_cols=48  Identities=44%  Similarity=0.759  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      |++||++||++|+++|.+||..+|..||..||.+||+.||+.||.+++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999997779999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.53  E-value=1.2e-14  Score=133.23  Aligned_cols=108  Identities=28%  Similarity=0.589  Sum_probs=94.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCC--CCCCCChHHHHHHHHHHH-------
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI--KRGNISDDEEDLILRLHK-------   92 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~--~~~~WT~eEd~~Ll~~v~-------   92 (203)
                      .+|+||+||++.|..+|..+| ++|.+|+..||  |.+..|++||.++...+-  +++.||.||++.|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999 78999999995  999999999999998874  999999999999999995       


Q ss_pred             Hh-------------------CCchhhhhccCCCCCHHHHHHHHHHhhccc-ccCCCCCC
Q 028843           93 LL-------------------GSRWSLIAGRLPGRTDNEIKNYWNSHLSKK-INHKHKTP  132 (203)
Q Consensus        93 ~~-------------------G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~-~~~~~~t~  132 (203)
                      ++                   +-+|+.|++.+..|+..||+-+|+.++... .+...+..
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~  519 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESK  519 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccc
Confidence            33                   124999999999999999999999877654 45555554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.52  E-value=1.1e-14  Score=92.53  Aligned_cols=46  Identities=33%  Similarity=0.660  Sum_probs=41.8

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc-hhhhhccCC-CCCHHHHHHHHHHhh
Q 028843           76 RGNISDDEEDLILRLHKLLGSR-WSLIAGRLP-GRTDNEIKNYWNSHL  121 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~~-W~~Ia~~l~-~Rt~~q~k~Rw~~~l  121 (203)
                      +++||++||.+|+++|.+||.. |..||..|| +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999987 999999999 999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.33  E-value=2.6e-12  Score=80.37  Aligned_cols=47  Identities=36%  Similarity=0.799  Sum_probs=44.4

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           76 RGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      +++||++||.+|+.++..|| .+|..||..|++||+.+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.32  E-value=1.6e-12  Score=119.52  Aligned_cols=122  Identities=21%  Similarity=0.244  Sum_probs=105.4

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCC-----------------------CChhhhhhhhccCcCCcccchhhhhcccCCC-C
Q 028843           20 VVNRGAWTAEEDRKLTEYIEIHGA-----------------------KRWKNVATESGLNRCGKSCRLRWLNYLRPNI-K   75 (203)
Q Consensus        20 ~~~k~~WT~eED~~L~~~v~~~g~-----------------------~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~-~   75 (203)
                      .++.+.|+++||..|-+.|..|-.                       +-|..|...|| -|+...++++-++...|-- .
T Consensus       305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~  383 (607)
T KOG0051|consen  305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENK  383 (607)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCccccc
Confidence            566799999999999999977721                       12788888899 5999999885554444433 9


Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhccc--ccCCCCCCCCCCchhhhhh
Q 028843           76 RGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK--INHKHKTPQQPQQPATTRL  143 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~--~~~~~~t~~e~~~l~~~~~  143 (203)
                      +|.||++|++.|..+|.++|+.|..|++.| ||.+..|+.||.+++...  .+.+.|+.+|...|+.++.
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~  452 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN  452 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999 999999999999999877  4899999999999999884

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.23  E-value=7.7e-12  Score=78.18  Aligned_cols=48  Identities=40%  Similarity=0.823  Sum_probs=44.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhccc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      ++.||++||.+|+.++..||..+|..||..|+ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999778999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.22  E-value=2.4e-11  Score=74.71  Aligned_cols=44  Identities=34%  Similarity=0.709  Sum_probs=41.7

Q ss_pred             CCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhh
Q 028843           78 NISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHL  121 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l  121 (203)
                      +||++|+..|+.++..|| .+|..||..|++||+.+|++||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.13  E-value=9.2e-12  Score=113.36  Aligned_cols=121  Identities=26%  Similarity=0.325  Sum_probs=98.7

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCc
Q 028843           73 NIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSE  151 (203)
Q Consensus        73 ~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~  151 (203)
                      ..+.|.|+..||..|..+|+.|| ++|+.||..|..+++++|++||++++.+.++++.|+.+++.+++.+...+|..|+.
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wst   96 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST   96 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhh
Confidence            45788999999999999999999 67999999998899999999999999999999999999999999999999999999


Q ss_pred             ccccCC-cCCccccCCCCCccccccCCCCCCchhhccccccCc
Q 028843          152 IAPVNE-EGGRQIANSEVNLDFDFSTEGLCGLDWVNKFLQLDD  193 (203)
Q Consensus       152 i~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~e~~~~f~~~d~  193 (203)
                      |+.... ....++.+-.++..=+++.........++.|..+|+
T Consensus        97 ia~~~d~rt~~~~~ery~~~~~~~~s~~~s~~~~~~~f~k~d~  139 (512)
T COG5147          97 IADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDP  139 (512)
T ss_pred             hccccCccchHHHHHHHHHHhhhhhccccccccchhhccccCc
Confidence            999877 455555544444433333333344455555655554

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.12  E-value=5.6e-11  Score=73.06  Aligned_cols=44  Identities=41%  Similarity=0.762  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843           25 AWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        25 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   69 (203)
                      +||++||..|+.++..+|..+|..||..++ +|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999778999999999 89999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=1.9e-11  Score=109.76  Aligned_cols=96  Identities=21%  Similarity=0.274  Sum_probs=88.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcc
Q 028843           74 IKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEI  152 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i  152 (203)
                      ++.|.|+.-||++|..+|.+|| +.|+.||..++..|+.||++||...+++.+++..|+.+++..++++....+++|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            4678999999999999999999 679999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcCCccccCCCCC
Q 028843          153 APVNEEGGRQIANSEVN  169 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~~  169 (203)
                      ++++...+++|..-..+
T Consensus        85 a~i~gr~~~qc~eRy~~  101 (617)
T KOG0050|consen   85 ADIMGRTSQQCLERYNN  101 (617)
T ss_pred             HHHhhhhHHHHHHHHHH
Confidence            99998888777654443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.24  E-value=1.1e-06  Score=57.69  Aligned_cols=49  Identities=14%  Similarity=0.297  Sum_probs=43.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCh---hhhhhhhccCc-CCcccchhhhhcc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGAKRW---KNVATESGLNR-CGKSCRLRWLNYL   70 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~~~W---~~Ia~~~~~~R-t~~qcr~Rw~~~l   70 (203)
                      .+-.||+||..+++.+|+.+|.++|   ..|+..|+..| |..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999998799   99999987566 9999999998864

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.14  E-value=1.7e-06  Score=77.02  Aligned_cols=51  Identities=25%  Similarity=0.510  Sum_probs=46.9

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      -++-...||++|+-+|++++..||.+||..||.++| .|++.+|+++|.+++
T Consensus        68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            345568899999999999999999999999999999 999999999999864

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.96  E-value=2.2e-05  Score=51.53  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=41.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-ch---hhhhccCC-CC-CHHHHHHHHHHhhc
Q 028843           76 RGNISDDEEDLILRLHKLLGS-RW---SLIAGRLP-GR-TDNEIKNYWNSHLS  122 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~-~W---~~Ia~~l~-~R-t~~q~k~Rw~~~l~  122 (203)
                      +-.||+||...+++++..+|. +|   ..|+..|. .| |..||+.+.+.+..
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999995 99   99999883 45 99999999987653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.84  E-value=2.3e-05  Score=69.87  Aligned_cols=49  Identities=29%  Similarity=0.420  Sum_probs=44.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           74 IKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      +-...||.+|+-+|++++..|| ++|..||.++..|+..+|+.+|.+++-
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            4456799999999999999999 999999999999999999999997543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.83  E-value=1.3e-05  Score=62.81  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=44.2

Q ss_pred             CCCCCChHHHHHHHHHHHHh---CCc----hhhhhccCCCCCHHHHHHHHHHhhcccc
Q 028843           75 KRGNISDDEEDLILRLHKLL---GSR----WSLIAGRLPGRTDNEIKNYWNSHLSKKI  125 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~---G~~----W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~  125 (203)
                      ....||.|||.+|.+.|..|   |+.    ...++..| +||+.+|.-||+.++++.+
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY   59 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQY   59 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHH
Confidence            45789999999999999988   432    89999999 9999999999999999765

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.53  E-value=0.00032  Score=57.22  Aligned_cols=96  Identities=19%  Similarity=0.341  Sum_probs=70.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhhccC--cCCcccchhhhhccc----------------CCC-----CCCCCCh
Q 028843           25 AWTAEEDRKLTEYIEIHGAKRWKNVATESGLN--RCGKSCRLRWLNYLR----------------PNI-----KRGNISD   81 (203)
Q Consensus        25 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~--Rt~~qcr~Rw~~~l~----------------~~~-----~~~~WT~   81 (203)
                      +|++++|-+|+.+|..-.  +-..|+..+...  -|...+.+||+..|-                |..     .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998876  677887765433  356778899997653                221     3458999


Q ss_pred             HHHHHHHHHHHHhCC---chhhhh----ccC-CCCCHHHHHHHHHHhhc
Q 028843           82 DEEDLILRLHKLLGS---RWSLIA----GRL-PGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        82 eEd~~Ll~~v~~~G~---~W~~Ia----~~l-~~Rt~~q~k~Rw~~~l~  122 (203)
                      +|+++|........+   .+.+|-    ..| ++||+.++.++|..+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq  127 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ  127 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence            999999997765542   366662    223 78999999999995433

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.52  E-value=5.5e-05  Score=68.07  Aligned_cols=46  Identities=30%  Similarity=0.579  Sum_probs=42.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   69 (203)
                      ....||.+|..+|++.|+.|| .+|.+||.++| +|+..||..||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            556899999999999999999 57999999999 99999999999864

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.42  E-value=9.2e-05  Score=58.09  Aligned_cols=49  Identities=35%  Similarity=0.629  Sum_probs=42.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCC------ChhhhhhhhccCcCCcccchhhhhccc
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAK------RWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~------~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      .+...||.|||.+|...|.+|-..      ...+|+..+  +||+..|.-||+.+++
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--NRTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--cccHHHhcchHHHHHH
Confidence            467899999999999999988421      489999998  5999999999999877

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.39  E-value=0.00017  Score=65.00  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=41.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 028843           77 GNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNS  119 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~  119 (203)
                      .+||.+|..+|++.+..||..|.+||.++.+||..||--||.+
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence            4899999999999999999999999999999999999999985

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.34  E-value=0.00014  Score=66.92  Aligned_cols=49  Identities=33%  Similarity=0.623  Sum_probs=44.3

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   69 (203)
                      ....++.||.+|.-+|+++|+.|| .+|.+||.+++ +|+..||..++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence            345578999999999999999999 67999999999 99999999998764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.30  E-value=0.00033  Score=64.48  Aligned_cols=46  Identities=17%  Similarity=0.321  Sum_probs=43.1

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 028843           75 KRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSH  120 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~  120 (203)
                      .++.||.+|..+|++++..||..|.+||.++.+||..||--++..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999999999864

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.18  E-value=0.00036  Score=47.02  Aligned_cols=52  Identities=27%  Similarity=0.436  Sum_probs=33.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------ChhhhhhhhccCcCCcccchhhhhcccCCC
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAK--------RWKNVATESGLNRCGKSCRLRWLNYLRPNI   74 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~--------~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~   74 (203)
                      +.+||.+||+.|+..|..+...        -|.+++..-++.+|..+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            5689999999999999766321        299999998768899999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.16  E-value=0.00069  Score=45.63  Aligned_cols=50  Identities=16%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-hhhhhccCC-CCCHHHHHHHHHHhhcccc
Q 028843           76 RGNISDDEEDLILRLHKLLG--------SR-WSLIAGRLP-GRTDNEIKNYWNSHLSKKI  125 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G--------~~-W~~Ia~~l~-~Rt~~q~k~Rw~~~l~~~~  125 (203)
                      +.++|.+||+.|++.|..+.        +. |..++..-| .+|-.+.|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45899999999999997652        11 999998887 8999999999999887654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.07  E-value=0.00043  Score=48.76  Aligned_cols=52  Identities=31%  Similarity=0.463  Sum_probs=36.9

Q ss_pred             CCCChHHHHHHHHHHHH------hC--C------chhhhhccC----CCCCHHHHHHHHHHhhcccccCC
Q 028843           77 GNISDDEEDLILRLHKL------LG--S------RWSLIAGRL----PGRTDNEIKNYWNSHLSKKINHK  128 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~------~G--~------~W~~Ia~~l----~~Rt~~q~k~Rw~~~l~~~~~~~  128 (203)
                      ..||.+|...|++++..      ++  +      -|..||..|    ..||+.||+++|.++.+......
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k   71 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK   71 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999877      21  1      399999887    36999999999999777654433

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.98  E-value=0.00041  Score=48.86  Aligned_cols=48  Identities=40%  Similarity=0.702  Sum_probs=33.1

Q ss_pred             cCCCCHHHHHHHHHHHHH--h----C--CC-----Chhhhhhhh---ccCcCCcccchhhhhcc
Q 028843           23 RGAWTAEEDRKLTEYIEI--H----G--AK-----RWKNVATES---GLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~--~----g--~~-----~W~~Ia~~~---~~~Rt~~qcr~Rw~~~l   70 (203)
                      +..||.+|-..|+.++..  +    +  ..     -|..||..|   |..|++.||+.+|.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            458999999999999877  1    1  11     399999997   45799999999998753

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.90  E-value=0.00063  Score=54.11  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=42.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCc-------hhhhhccCCCCCHHHHHHHHHHhhcccc
Q 028843           75 KRGNISDDEEDLILRLHKLLGSR-------WSLIAGRLPGRTDNEIKNYWNSHLSKKI  125 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G~~-------W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~  125 (203)
                      +++.||.|+|.+|.+.|..|+..       ...++..| +||+.+|..||+.++++.+
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            56789999999999999988632       67777888 9999999999999888654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.85  E-value=0.00062  Score=58.85  Aligned_cols=48  Identities=23%  Similarity=0.518  Sum_probs=44.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhccc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      ---|+..|+-+|+++....|-++|..||..+| .|+...|+.+|.+++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            35699999999999999999999999999999 9999999999998755

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.73  E-value=0.00067  Score=53.95  Aligned_cols=49  Identities=29%  Similarity=0.554  Sum_probs=41.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCC------ChhhhhhhhccCcCCcccchhhhhccc
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAK------RWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~------~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      .++..||.|+|.+|.+.|..|+..      ....++..|  +|++.+|..||+.+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence            567899999999999999888743      377778877  5999999999977766

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.53  E-value=0.0077  Score=60.15  Aligned_cols=100  Identities=15%  Similarity=0.281  Sum_probs=75.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccch-------hhhh------ccc-------------------
Q 028843           24 GAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRL-------RWLN------YLR-------------------   71 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~-------Rw~~------~l~-------------------   71 (203)
                      ..||.-+=..++.+..+||..+-..||..|. +++...++.       ||..      ++.                   
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477777777788889999888999999997 788877752       2111      000                   


Q ss_pred             ------------------CCCCCCCCChHHHHHHHHHHHHhC-Cchhhhhc------------cCCCCCHHHHHHHHHHh
Q 028843           72 ------------------PNIKRGNISDDEEDLILRLHKLLG-SRWSLIAG------------RLPGRTDNEIKNYWNSH  120 (203)
Q Consensus        72 ------------------~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~------------~l~~Rt~~q~k~Rw~~~  120 (203)
                                        +..++..+|.+||..|+-++.+|| .+|..|-.            ++..||+..+..|...+
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                              233445699999999999999999 78998832            23579999999999987


Q ss_pred             hccc
Q 028843          121 LSKK  124 (203)
Q Consensus       121 l~~~  124 (203)
                      +.-.
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            7654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.28  E-value=0.0038  Score=54.07  Aligned_cols=46  Identities=28%  Similarity=0.408  Sum_probs=42.9

Q ss_pred             CCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           77 GNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      ..|+..|+.+|+++..-.| ++|..||.++..|+...||.+|..+..
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            3699999999999999999 999999999999999999999987665

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.06  E-value=0.0035  Score=43.16  Aligned_cols=49  Identities=29%  Similarity=0.473  Sum_probs=39.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----------------CChhhhhhhh----ccCcCCcccchhhhhcc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGA----------------KRWKNVATES----GLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~----------------~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l   70 (203)
                      ++..||++|.+.|+++|.+|..                ..|..|+..|    |..|+..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4578999999999999988831                1399999987    22699999999998764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.64  E-value=0.019  Score=39.46  Aligned_cols=48  Identities=27%  Similarity=0.498  Sum_probs=39.0

Q ss_pred             CCCCChHHHHHHHHHHHHhC----C-------------chhhhhccC-----CCCCHHHHHHHHHHhhcc
Q 028843           76 RGNISDDEEDLILRLHKLLG----S-------------RWSLIAGRL-----PGRTDNEIKNYWNSHLSK  123 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G----~-------------~W~~Ia~~l-----~~Rt~~q~k~Rw~~~l~~  123 (203)
                      ...||.+|..+|+++|.+|.    +             -|..|+..|     +.||..+|+.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            35799999999999998872    1             199998776     359999999999987543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.50  E-value=0.11  Score=39.01  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhc
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGA---KRWKNVATESG   54 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~   54 (203)
                      +..++..||.+||.-|+-++.+||.   +.|..|...+.
T Consensus        45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir   83 (118)
T PF09111_consen   45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIR   83 (118)
T ss_dssp             STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred             CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence            4677899999999999999999998   78999998874

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=93.73  E-value=0.067  Score=47.64  Aligned_cols=84  Identities=23%  Similarity=0.351  Sum_probs=62.7

Q ss_pred             ChhhhhhhhccCcCCcccchhhhhcccC-------------------------CCCCCCCChHHHHHHHHHHHHhCCchh
Q 028843           45 RWKNVATESGLNRCGKSCRLRWLNYLRP-------------------------NIKRGNISDDEEDLILRLHKLLGSRWS   99 (203)
Q Consensus        45 ~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~-------------------------~~~~~~WT~eEd~~Ll~~v~~~G~~W~   99 (203)
                      .|..+.-..+ .|...-...||.....+                         .+....||.+|-+-|.++++.|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            5766665544 67677777777665221                         223346999999999999999999999


Q ss_pred             hhhcc-----CCC-CCHHHHHHHHHHhhcccccCCC
Q 028843          100 LIAGR-----LPG-RTDNEIKNYWNSHLSKKINHKH  129 (203)
Q Consensus       100 ~Ia~~-----l~~-Rt~~q~k~Rw~~~l~~~~~~~~  129 (203)
                      .||..     ++. ||-..+|+||+.+.+..++-..
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            99977     555 9999999999987766554443

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=92.84  E-value=0.14  Score=45.10  Aligned_cols=50  Identities=16%  Similarity=0.241  Sum_probs=40.7

Q ss_pred             CCCCChHHHHHHHHHHHHh----------CCchhhhhccC----CCCCHHHHHHHHHHhhcccc
Q 028843           76 RGNISDDEEDLILRLHKLL----------GSRWSLIAGRL----PGRTDNEIKNYWNSHLSKKI  125 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~----------G~~W~~Ia~~l----~~Rt~~q~k~Rw~~~l~~~~  125 (203)
                      ...|+.+|-..||++....          +..|..||..+    .-||+.+|+++|.++.+...
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk  117 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYK  117 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            4689999999999988653          34499999865    34999999999998877654

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=92.78  E-value=0.17  Score=45.11  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=40.7

Q ss_pred             CCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 028843           78 NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNS  119 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~  119 (203)
                      +||.+|-.+...+....|...+.||..+|.|...||+..|.+
T Consensus       367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence            799999999999999999999999999999999999999975

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=90.75  E-value=1.1  Score=40.96  Aligned_cols=46  Identities=17%  Similarity=0.287  Sum_probs=41.9

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 028843           75 KRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSH  120 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~  120 (203)
                      -...||.||-.++-++...||.+..+|.+.||.|+-..+...|+..
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~  231 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSW  231 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHH
Confidence            3457999999999999999999999999999999999999988754

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=90.03  E-value=0.64  Score=32.75  Aligned_cols=45  Identities=24%  Similarity=0.457  Sum_probs=34.0

Q ss_pred             CCChHHHHHHHHHHHHh---CC----------chhhhhccC---CC--CCHHHHHHHHHHhhc
Q 028843           78 NISDDEEDLILRLHKLL---GS----------RWSLIAGRL---PG--RTDNEIKNYWNSHLS  122 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~---G~----------~W~~Ia~~l---~~--Rt~~q~k~Rw~~~l~  122 (203)
                      .||++++..|++++.+.   |+          .|..|+..|   +|  .+..||++||..+-+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            49999999999988654   21          288898776   23  478899999986544

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=89.65  E-value=0.46  Score=33.52  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             CCCccCCCCHHHHHHH--------HHHHHHhCCCChhhhhhh
Q 028843           19 NVVNRGAWTAEEDRKL--------TEYIEIHGAKRWKNVATE   52 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L--------~~~v~~~g~~~W~~Ia~~   52 (203)
                      |.-..|.||+++|+.|        ..++++||   +..|+..
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R   81 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERR   81 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence            5566899999999999        45678887   5666643

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.17  E-value=0.35  Score=43.14  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   69 (203)
                      ....--+||.+|-+++.+++...| .++.-|+..+| +|..+|+..+|.+-
T Consensus       361 ~~~~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP-~R~RkqIKaKfi~E  409 (507)
T COG5118         361 KKKGALRWSKKEIEKFYKALSIWG-TDFSLISSLFP-NRERKQIKAKFIKE  409 (507)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHhc-chHHHHHHhcC-chhHHHHHHHHHHH
Confidence            444557899999999999999999 67999999999 99999999999863

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=83.93  E-value=1.4  Score=31.02  Aligned_cols=45  Identities=31%  Similarity=0.592  Sum_probs=31.7

Q ss_pred             CCCHHHHHHHHHHHHHh---CCC---------Chhhhhhhhc----cCcCCcccchhhhhc
Q 028843           25 AWTAEEDRKLTEYIEIH---GAK---------RWKNVATESG----LNRCGKSCRLRWLNY   69 (203)
Q Consensus        25 ~WT~eED~~L~~~v~~~---g~~---------~W~~Ia~~~~----~~Rt~~qcr~Rw~~~   69 (203)
                      +||+++++.|++++...   |..         .|..|+..|.    ...+..||..||...
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l   61 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL   61 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            59999999999987444   111         3999998874    234557777777643

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=83.71  E-value=1.5  Score=32.90  Aligned_cols=51  Identities=24%  Similarity=0.385  Sum_probs=39.7

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCC----chhhhhcc------------CCCCCHHHHHHHHHHhhcc
Q 028843           73 NIKRGNISDDEEDLILRLHKLLGS----RWSLIAGR------------LPGRTDNEIKNYWNSHLSK  123 (203)
Q Consensus        73 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~------------l~~Rt~~q~k~Rw~~~l~~  123 (203)
                      +.++..+|++||.-|+-++.+||-    .|..|...            +..||+..+..|...+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556779999999999999999995    69888532            2569999999999987764

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=83.61  E-value=0.94  Score=39.85  Aligned_cols=47  Identities=28%  Similarity=0.443  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHhC---------CCChhhhhhhh---ccCcCCcccchhhhhcc
Q 028843           24 GAWTAEEDRKLTEYIEIHG---------AKRWKNVATES---GLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g---------~~~W~~Ia~~~---~~~Rt~~qcr~Rw~~~l   70 (203)
                      ..|+.+|=..|+.+..+..         ...|..||..+   |..|++.||+.+|.+..
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            7899999999999874331         13599999954   45699999999998754

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=83.50  E-value=2  Score=26.89  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             hHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           81 DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        81 ~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      ++++..++.++-..|-.+..||..+ |.|...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            3567777888888899999999999 9999999998876543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=83.35  E-value=1  Score=27.40  Aligned_cols=38  Identities=26%  Similarity=0.396  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhh
Q 028843           29 EEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLN   68 (203)
Q Consensus        29 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~   68 (203)
                      +=|.+|+.++...+...+.+||..+|  =+...|..|+..
T Consensus         3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r   40 (42)
T PF13404_consen    3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR   40 (42)
T ss_dssp             HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence            34788999999999889999999996  888888888754

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-23
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-22
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-21
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-21
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-21
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-18
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		6e-12
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		3e-09
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		6e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		6e-09
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		3e-06
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		5e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-05

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
           +N+G WT EED+++ E+++ +G KRW ++A      R GK CR RW N+L P +K+ + +
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           ++E+ +I + HK LG+RW+ IA  LPGRTDN +KN+WNS + +K+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 23  RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
           +G WT EED+K+ E ++ +G K+W  +A      R GK CR RW N+L P +K+ + +++
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 83  EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKIN 126
           E+ +I   HK+LG+RW+ IA  LPGRTDN +KN+WNS + +K++
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVD 109

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 23  RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
           +G WT EED+++ + ++ +G KRW  +A      R GK CR RW N+L P +K+ + +++
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 83  EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           E+ +I + HK LG+RW+ IA  LPGRTDN IKN+WNS + +K+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 23  RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
           +G WT EED+++ + ++ +G KRW  +A      R GK CR RW N+L P +K+ + +++
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 83  EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           E+ +I + HK LG+RW+ IA  LPGRTDN IKN+WNS + +K+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 23  RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
           +G WT EED+++ + ++ +G KRW  +A      R GK CR RW N+L P +K+ + +++
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 83  EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           E+ +I + HK LG+RW+ IA  LPGRTDN IKN+WNS + +K+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 23  RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
           +G +T  ED  + EY++ +G + W  + T    NR  K CR RW N+L P + +   + +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRI-TSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 83  EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI----NHK 128
           E++ I R +  LGS+WS+IA  +PGRTDN IKN WNS +SK+I    NHK
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHK 110

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 26  WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEED 85
           +T EED  L   +  HG+  WK +A  +  NR  + CR RW NYL P+I     + +E+ 
Sbjct: 14  FTPEEDEMLKRAVAQHGSD-WKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPWTAEEDA 71
Query: 86  LILRLHKLLGSRWSLIAGRLPGRTDNEIKNYW 117
           L+++  +  G +W++IA   PGRTD  IKN W
Sbjct: 72  LLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 40/52 (76%)
Query: 74  IKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           +K+ + +++E+ +I + HK LG+RW+ IA  LPGRTDN IKN+WNS + +K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 26  WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEED 85
           +T EED KL + +  +GAK W  + ++  + R  + CR RW NY+ P ++    S +E+ 
Sbjct: 4   FTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPEEDM 62
Query: 86  LILRLHKLLGSRWSLIAGRLPGRTDNEIKNYW 117
           L+ + +   G +W+ I+  L  R+DN I+N W
Sbjct: 63  LLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 40/52 (76%)
Query: 74  IKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           +K+ + +++E+ ++ + HK LG+RW+ IA  LPGRTDN IKN+WNS + +K+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
          +G WT EED+++ E ++ +G KRW  +A      R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
          +G WT EED++L + ++ +G KRW  +A      R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
          +G WT EED+++ + ++ +G KRW  +A      R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-59
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	6e-57
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	9e-56
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	7e-16
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-50
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-50
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-48
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-30
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	9e-23
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-04
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-21
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-19
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	7e-17
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	4e-08
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	5e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	5e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	4e-05
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	6e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	7e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  180 bits (460), Expect = 3e-59
 Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 23  RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
           +G +T  ED  + EY++ +G + W  + +    NR  K CR RW N+L P + +   + +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 83  EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTR 142
           E++ I R +  LGS+WS+IA  +PGRTDN IKN WNS +SK+I+      +      + +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 143 LKVPE 147
            K  +
Sbjct: 121 RKAAD 125

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  174 bits (443), Expect = 6e-57
 Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
           + +G WT EED+++ + ++ +G KRW  +A      R GK CR RW N+L P +K+ + +
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           ++E+ +I + HK LG+RW+ IA  LPGRTDN IKN+WNS + +K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  172 bits (438), Expect = 9e-56
 Identities = 47/105 (44%), Positives = 75/105 (71%), Gaps = 1/105 (0%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
           +N+G WT EED+++ E+++ +G KRW ++A      R GK CR RW N+L P +K+ + +
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           ++E+ +I + HK LG+RW+ IA  LPGRTDN +KN+WNS + +K+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 69.9 bits (172), Expect = 7e-16
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 56  NRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSR-WSLIAGRLPGRTDNEIK 114
           NR    C+ RW   L P + +G  + +E+  ++   +  G + WS IA  L GR   + +
Sbjct: 7   NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCR 66

Query: 115 NYWNSHLSKKINHKHKTPQ 133
             W++HL+ ++     T +
Sbjct: 67  ERWHNHLNPEVKKTSWTEE 85

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  158 bits (401), Expect = 2e-50
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 23  RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD 82
           +  +T EED KL + +  +GAK W  ++      R  + CR RW NY+ P ++    S +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 83  EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHK 128
           E+ L+ + +   G +W+ I+  L  R+DN I+N W      +  H+
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  158 bits (401), Expect = 3e-50
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 18  KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
                +  +T EED  L   +  HG   WK +A  +  NR  + CR RW NYL P+I   
Sbjct: 6   LKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIA-ATFPNRNARQCRDRWKNYLAPSISHT 63

Query: 78  NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQ 137
             + +E+ L+++  +  G +W++IA   PGRTD  IKN W +  +K    + +   +   
Sbjct: 64  PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHHH 123

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  153 bits (389), Expect = 4e-48
 Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
           + +G WT EED+++ + ++ +G KRW  +A      R GK CR RW N+L P +K+ + +
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 81  DDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125
           ++E+ +I + HK LG+RW+ IA  LPGRTDN IKN+WNS + +K+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  107 bits (270), Expect = 5e-30
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 21  VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNIS 80
           + +  WT EED KL + +E +G   WK +A     NR    C+ RW   L P + +G  +
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 81  DDEEDLILRLHKLLGSR-WSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQ 133
            +E+  +++L +  G + WS+IA  L GR   + +  W++HL+ ++     T +
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 86.2 bits (214), Expect = 9e-23
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIK 75
          S  +    G W   ED  L   +  +G  +W  +A+     +  K C+ RW  +L P+IK
Sbjct: 2  SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIK 60

Query: 76 RGNISDDEE 84
          +   S    
Sbjct: 61 KTEWSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 71  RPNIKRGNISDDEEDLILRLHKLLGSR-WSLIAGRLPGRTDNEIKNYWNSHLSKKINHK 128
             + K G   + E++++       G   WS IA  L  ++  + K  W   L   I   
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKT 62

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 82.2 bits (204), Expect = 2e-21
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
          + +G WT EED++L + ++ +G KRW  +A +    R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 76.8 bits (190), Expect = 2e-19
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
          + +  WT EED KL + +E +G   WK +A     NR    C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 70.3 bits (173), Expect = 7e-17
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
           +  WT EED +L   +   G + WK +A+    NR  + C+ RWL  L  
Sbjct: 7  GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSG 56

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI 74
           S  +   +  W+ EE+ KL    ++   + W+ +A    + R    C   +   L    
Sbjct: 1  GSSGSSGKKTEWSREEEEKLLHLAKLMPTQ-WRTIAPI--IGRTAAQCLEHYEFLLDKAA 57

Query: 75 KRGN 78
          +R +
Sbjct: 58 QRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 72  PNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHK 128
            + K+   S +EE+ +L L KL+ ++W  IA  + GRT  +   ++   L K     
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIA-PIIGRTAAQCLEHYEFLLDKAAQRD 60

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLN-YLRPNI 74
             +WTA+E+  L E +   G   W++VA +    +  + C   ++  +  P+ 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPSS 59

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLR 71
          R AW  EED+ L   +  +G   W  +       NR     + RW    +
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 26 WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY 69
          W A+E+  L +  E  G   W ++A   G  R  + CR  +L  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLRPNIKRGNISD 81
          R AW  EED+ L   +  +G   W  +       NR     + RW        K   IS 
Sbjct: 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK----KLKLISS 65

Query: 82 DEED 85
          D ED
Sbjct: 66 DSED 69

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 22  NRGAWTAEEDRKLTEYIEIHGAKRWKNV---ATESGLNRCGKSCRLRWLNYLR-----PN 73
            R  +T  E   L E +E  G  RW++V   A E+  +R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 74  IKRGN-ISDDEEDLILRLHKLLGSRWS 99
            +RG  +  +  D +L          S
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNV---ATESGLNRCGKSCRLRWLNYLR-----PN 73
           R  ++  E   L + +E  G  RW++V   A E   +R     + +W   +      P 
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 74 IKRGNISDDE-EDLILRLHKLLGSRWS 99
           +RG     E  + +L  H     +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 22  NRGAWTAEEDRKLTEYIEIHGAKRWKNV---ATESGLNRCGKSCRLRWLNYLR-----PN 73
            R  ++  E   L E +E  G  RW++V   A ++  +R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 74  IKRGN-ISDDEEDLILRLHKLLGSRWS 99
            +RG  +  D  D +L  H     +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
          + G +T EE  KL E    HG   W  +     L R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAA--LGRSASSVKDRC-RLMKDTCNTG 73

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 26 WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY 69
          WT +E   L E +E++    W  V+   G +R    C L +L  
Sbjct: 21 WTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLRPNI 74
          +  WT EE   +   ++ +G   W  ++      NR     + RW    R  +
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLRPNI 74
           +  WT EE   +   ++ +G   W  ++      NR     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 22 NRGAWTAEEDRKLTEYIEIHGAKR-----WKNVATESGLNRCGKSCRLRWLNYLRPNIKR 76
          N+ ++T EED  + + +  +  +R     +  ++     N  G S R R+  YL   ++ 
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKRLEY 65

Query: 77 GNISDDEEDLIL 88
              D    L+ 
Sbjct: 66 VYEVDKFGKLVR 77

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 63  RLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS 122
                +  R N+     +++E     +     G  WS IA  +  +T ++ KN++ ++  
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY-- 60

Query: 123 KKINHKHKTPQQPQQPATTRLKVPENTSE 151
           KK  +  +  QQ +              +
Sbjct: 61  KKRQNLDEILQQHKLKMEKERNARRKKKK 89

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 25 AWTAEEDRKLTEYIEIHGAKRWKNV---ATESGLNRCGKSCRLRWLNYLR-----PNIKR 76
           ++  E   L E +E  G  RW++V   A ++  +R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 77 GN-ISDDEEDLILRLHKLLGSR 97
          G  +  D  D +L  H     +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 35/241 (14%), Positives = 59/241 (24%), Gaps = 90/241 (37%)

Query: 7   NNNNNNNDASGKNVVNRGAWTAEEDRKLTE---------YIEIHGAKRWKNVATESGLNR 57
           +   N+N    K  V+R     +   KL +          + I G           G   
Sbjct: 117 DRLYNDNQVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVL---------G--- 160

Query: 58  CGKSC-----------------RLRWLNYLRPNIKRGNISDDEEDL--ILRLHKLLGSRW 98
            GK+                  ++ WLN         N +  E  L  + +L   +   W
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQKLLYQIDPNW 213

Query: 99  ---SLIAGRLPGRTDNEI---------KNY----------WNSHLSKKINHKHKTPQQPQ 136
              S  +  +  R  +           K Y           N+      N   K      
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI----- 268

Query: 137 QPATTRLKVPENTSEIAPVNEEGGRQIANSEVNLDFDFS-TEGLCGLDWVNKFLQLDDDH 195
              TTR            ++      I+    ++       + L       K+L      
Sbjct: 269 -LLTTR-----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQD 317

Query: 196 L 196
           L
Sbjct: 318 L 318

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 8  NNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGA---KRWKNVATESGLNRCGKSCRL 64
          + ++ +    +       WT  + + L   ++ +       W  +A     ++  + C  
Sbjct: 3  SGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIA 61

Query: 65 RWLNYLRPNIKRG 77
          R+   L      G
Sbjct: 62 RY-KLLVSGPSSG 73

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI 74
           S  +      WT EE     + +   G +RW  ++   G +R     +     Y +  +
Sbjct: 1  GSSGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKV 58

Query: 75 KRG 77
          K G
Sbjct: 59 KCG 61

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%)

Query: 71  RPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHK 130
             +      + +E++L  +     G RW+ I+  +  RT  ++K+Y   +   K+     
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 131 TPQQPQQPA 139
                Q+  
Sbjct: 64  KETPNQKTG 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.98
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.89
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.85
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.84
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.83
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.83
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.81
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.78
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.78
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.76
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.76
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.75
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.75
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.75
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.75
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.74
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.74
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.73
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.73
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.72
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.7
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.69
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.68
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.67
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.66
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.66
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.66
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.64
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.64
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.64
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.63
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.63
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.36
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.57
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.56
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.52
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.51
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.51
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.51
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.51
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.5
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.48
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.47
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.17
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.43
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.42
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.42
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.3
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.2
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.14
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	99.1
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.06
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.02
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.93
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.92
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.82
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.8
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.74
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.72
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.71
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.66
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.64
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.45
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.41
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.31
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.29
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.57
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.24
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.23
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.11
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.01
2crg_A	70	Metastasis associated protein MTA3; transcription	98.0
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.96
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.73
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.71
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.67
2crg_A	70	Metastasis associated protein MTA3; transcription	97.65
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.54
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.47
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.47
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.4
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.37
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.49
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.45
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.39
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.97
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.43
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	93.28
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	91.45
2rq5_A	121	Protein jumonji; developmental protein, nucleus, r	81.69

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=1.5e-39  Score=255.73  Aligned_cols=138  Identities=28%  Similarity=0.556  Sum_probs=94.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC-ch
Q 028843           20 VVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS-RW   98 (203)
Q Consensus        20 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W   98 (203)
                      .+++++||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            36789999999999999999999889999999999 99999999999999999999999999999999999999995 79


Q ss_pred             hhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcccccCCc
Q 028843           99 SLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAPVNEE  158 (203)
Q Consensus        99 ~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i~~~~~~  158 (203)
                      ..||..|||||+.||++||.++|++.+++++||++|+..|+.++..+|.+|+.||....+
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~g  141 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG  141 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999999999999987543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=7.3e-37  Score=233.30  Aligned_cols=127  Identities=34%  Similarity=0.637  Sum_probs=109.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhh
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIA  102 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia  102 (203)
                      ||+||+|||++|+.+|..||.++|..||..|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcccc
Q 028843          103 GRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAP  154 (203)
Q Consensus       103 ~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i~~  154 (203)
                      +.|||||+.+|++||+.+|++.+....++.+...+.    ......|+.|++
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p~----~~kk~~~~~i~k  128 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPD----RSKKRKAADVPK  128 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCCC----CC----------
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCch----hhhhhhhhhcch
Confidence            999999999999999999999999888776654331    122345666654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=2.3e-36  Score=222.08  Aligned_cols=103  Identities=45%  Similarity=0.871  Sum_probs=99.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhh
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSL  100 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~  100 (203)
                      +++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            6899999999999999999999888999999998 999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCHHHHHHHHHHhhccc
Q 028843          101 IAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus       101 Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      ||+.|||||+.+|++||+.+++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999998865

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=2.7e-36  Score=222.64  Aligned_cols=104  Identities=31%  Similarity=0.548  Sum_probs=99.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhh
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIA  102 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia  102 (203)
                      ||+||+|||++|+++|..||..+|..||..|| +|++.||++||.++|+|.+++|+||+|||.+|+++|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHhhcccccC
Q 028843          103 GRLPGRTDNEIKNYWNSHLSKKINH  127 (203)
Q Consensus       103 ~~l~~Rt~~q~k~Rw~~~l~~~~~~  127 (203)
                      +.|||||+.+|++||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999998876543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1.6e-35  Score=225.02  Aligned_cols=112  Identities=42%  Similarity=0.802  Sum_probs=102.5

Q ss_pred             CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHH
Q 028843           12 NNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLH   91 (203)
Q Consensus        12 ~~~~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v   91 (203)
                      .+...-.|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|
T Consensus        16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~   94 (128)
T 1h8a_C           16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH   94 (128)
T ss_dssp             ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHH
T ss_pred             HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence            3444566889999999999999999999999888999999999 999999999999999999999999999999999999


Q ss_pred             HHhCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           92 KLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        92 ~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      .+||++|+.||+.|||||+.+|++||+.++++.
T Consensus        95 ~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           95 KRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999998765

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=2.9e-35  Score=223.05  Aligned_cols=106  Identities=35%  Similarity=0.643  Sum_probs=101.1

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC
Q 028843           17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS   96 (203)
Q Consensus        17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~   96 (203)
                      .++..++|+||+|||++|+++|..||. +|..||..|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            357889999999999999999999996 8999999999 99999999999999999999999999999999999999999


Q ss_pred             chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           97 RWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        97 ~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      +|+.||+.|||||+.+|++||..++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.98  E-value=9.2e-33  Score=216.92  Aligned_cols=107  Identities=43%  Similarity=0.819  Sum_probs=102.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC
Q 028843           17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS   96 (203)
Q Consensus        17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~   96 (203)
                      -.|.+++|+||+|||++|+++|..||..+|..||..|+ +|++.||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            45778999999999999999999999878999999998 99999999999999999999999999999999999999999


Q ss_pred             chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           97 RWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        97 ~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      +|+.||+.|||||+++|++||+.+++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999988765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.96  E-value=8.6e-31  Score=198.83  Aligned_cols=108  Identities=23%  Similarity=0.466  Sum_probs=84.3

Q ss_pred             hhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhcccccC
Q 028843           49 VATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKKINH  127 (203)
Q Consensus        49 Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~  127 (203)
                      ||+.|+ +|++.||+.||.++|+|.+++|+||+|||++|+++|..||. +|..||..|||||+.||++||.++|++.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788998 99999999999999999999999999999999999999995 6999999999999999999999999999999


Q ss_pred             CCCCCCCCCchhhhhhhCCCCCCcccccCC
Q 028843          128 KHKTPQQPQQPATTRLKVPENTSEIAPVNE  157 (203)
Q Consensus       128 ~~~t~~e~~~l~~~~~~~~~~~s~i~~~~~  157 (203)
                      ++||++|+..|+.++..+|.+|+.||....
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~  109 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLP  109 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCHHHHGGGST
T ss_pred             ccCCHHHHHHHHHHHHHHCcCHHHHHHHCC
Confidence            999999999999999999999999998753

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=3.1e-24  Score=146.43  Aligned_cols=68  Identities=26%  Similarity=0.556  Sum_probs=64.8

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHH
Q 028843           16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEE   84 (203)
Q Consensus        16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd   84 (203)
                      +..+.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||+.||.++|+|.+++++||+|||
T Consensus         2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            345789999999999999999999999889999999999 99999999999999999999999999997

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.85  E-value=3.6e-22  Score=146.19  Aligned_cols=85  Identities=22%  Similarity=0.463  Sum_probs=81.1

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCc
Q 028843           73 NIKRGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSE  151 (203)
Q Consensus        73 ~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~  151 (203)
                      ++++|+||+|||++|+++|..||. +|..||..|||||+.||++||.++|+|.+++++||++|+..|+.++..+|.+|+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            368999999999999999999996 7999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 028843          152 IAPVNE  157 (203)
Q Consensus       152 i~~~~~  157 (203)
                      ||....
T Consensus        81 Ia~~l~   86 (105)
T 1gv2_A           81 IAKLLP   86 (105)
T ss_dssp             HHTTCT
T ss_pred             HHHHcC
Confidence            998753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.84  E-value=4.9e-22  Score=150.19  Aligned_cols=88  Identities=19%  Similarity=0.327  Sum_probs=83.4

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCC
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTS  150 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s  150 (203)
                      .+..++|+||+|||++|+++|..||.+|..||..|||||+.||++||.++|++.+++++||++||..|+.++..+|.+|+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCc
Q 028843          151 EIAPVNEE  158 (203)
Q Consensus       151 ~i~~~~~~  158 (203)
                      .|+....+
T Consensus        86 ~Ia~~l~g   93 (126)
T 3osg_A           86 IIAKFFPG   93 (126)
T ss_dssp             HHHTTSTT
T ss_pred             HHHHHcCC
Confidence            99987543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=9.2e-21  Score=129.12  Aligned_cols=65  Identities=20%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCC
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQP  135 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~  135 (203)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|++.+++++||++||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            5778999999999999999999999 7999999999999999999999999999999999999997

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.83  E-value=1.5e-21  Score=143.51  Aligned_cols=82  Identities=12%  Similarity=0.234  Sum_probs=78.6

Q ss_pred             CCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcccc
Q 028843           76 RGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAP  154 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i~~  154 (203)
                      +|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|+|.+++++||++|+..|+.++..+|.+|+.||.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            589999999999999999995 8999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q 028843          155 VNE  157 (203)
Q Consensus       155 ~~~  157 (203)
                      ...
T Consensus        81 ~l~   83 (107)
T 2k9n_A           81 FLK   83 (107)
T ss_dssp             HHS
T ss_pred             HCC
Confidence            653

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.82  E-value=3.2e-21  Score=146.61  Aligned_cols=83  Identities=27%  Similarity=0.419  Sum_probs=79.8

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcccc
Q 028843           76 RGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAP  154 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i~~  154 (203)
                      +|+||+|||++|+++|..|| .+|..||..|||||+.||+.||.++|.+.+++++||++||..|+.++..+|.+|+.||.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            69999999999999999999 78999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCc
Q 028843          155 VNEE  158 (203)
Q Consensus       155 ~~~~  158 (203)
                      ...+
T Consensus        82 ~l~g   85 (131)
T 3zqc_A           82 LIPG   85 (131)
T ss_dssp             TSTT
T ss_pred             HcCC
Confidence            7643

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.81  E-value=2.8e-20  Score=152.30  Aligned_cols=106  Identities=21%  Similarity=0.318  Sum_probs=92.1

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhhccCcCCcccchhhhhcccCCCC-----------------
Q 028843           18 KNVVNRGAWTAEEDRKLTEYIEIHGAKR-----WKNVATESGLNRCGKSCRLRWLNYLRPNIK-----------------   75 (203)
Q Consensus        18 ~~~~~k~~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~-----------------   75 (203)
                      .+.+++++||+|||++|+++|.++|...     |..||+.|+ |||+.||+.||.++|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3568899999999999999999998542     999999999 99999999999999999986                 


Q ss_pred             ------------CCCCChHHHHHHHHHHHH-h------------------------------------------------
Q 028843           76 ------------RGNISDDEEDLILRLHKL-L------------------------------------------------   94 (203)
Q Consensus        76 ------------~~~WT~eEd~~Ll~~v~~-~------------------------------------------------   94 (203)
                                  +..||.+||-.|+..+.+ |                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999998876 1                                                


Q ss_pred             -----CC----chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           95 -----GS----RWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        95 -----G~----~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                           |+    .|..||+.+|+||..++|+||...|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 11    6999999999999999999999888764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.78  E-value=1.4e-19  Score=123.87  Aligned_cols=58  Identities=19%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             chhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhh
Q 028843           63 RLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHL  121 (203)
Q Consensus        63 r~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l  121 (203)
                      --||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            3588999999999999999999999999999999999999999 999999999998643

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.78  E-value=2.4e-19  Score=133.70  Aligned_cols=85  Identities=21%  Similarity=0.359  Sum_probs=79.5

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhh----ccCcCCcccchhhhhccc-----CCCCCC-CCChHHH
Q 028843           15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATES----GLNRCGKSCRLRWLNYLR-----PNIKRG-NISDDEE   84 (203)
Q Consensus        15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l~-----~~~~~~-~WT~eEd   84 (203)
                      ....+..++++||+|||+.|+++|.+||.++|..|+..+    + +||..+|++||.++++     |.+++| +|+++|+
T Consensus         9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~   87 (121)
T 2juh_A            9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLL   87 (121)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHH
T ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHH
Confidence            446688999999999999999999999988999999985    5 9999999999999998     999999 9999999


Q ss_pred             HHHHHHHHHhCCchhh
Q 028843           85 DLILRLHKLLGSRWSL  100 (203)
Q Consensus        85 ~~Ll~~v~~~G~~W~~  100 (203)
                      .+|+.++..+|++|++
T Consensus        88 ~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           88 DRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHccchhc
Confidence            9999999999999987

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=4.7e-19  Score=117.07  Aligned_cols=57  Identities=30%  Similarity=0.591  Sum_probs=54.0

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCC
Q 028843           18 KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIK   75 (203)
Q Consensus        18 ~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~   75 (203)
                      .|.+++++||+|||++|+++|.+||.++|..||..|+ +||+.||+.||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            3788999999999999999999999878999999999 99999999999999999875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=4.5e-19  Score=119.38  Aligned_cols=60  Identities=27%  Similarity=0.371  Sum_probs=57.0

Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcccccCCC
Q 028843           69 YLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKH  129 (203)
Q Consensus        69 ~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~  129 (203)
                      +|+|.+++++||+|||++|+++|..||.+|..||+ ++|||+.||++||.++|++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            68999999999999999999999999999999999 8899999999999999999887654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=1.1e-18  Score=115.18  Aligned_cols=56  Identities=21%  Similarity=0.446  Sum_probs=53.0

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhccccc
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKIN  126 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~  126 (203)
                      +|.+++++||+|||++|+++|.+|| ++|+.||..|||||+.||++||+++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            5788999999999999999999999 6999999999999999999999999998764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.75  E-value=5.2e-19  Score=113.57  Aligned_cols=52  Identities=42%  Similarity=0.862  Sum_probs=49.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCC
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPN   73 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~   73 (203)
                      +++|+||+|||++|+++|.+||..+|..||..|+ +||+.||+.||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999778999999998 999999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.75  E-value=1.6e-18  Score=118.66  Aligned_cols=65  Identities=18%  Similarity=0.241  Sum_probs=58.9

Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCC
Q 028843           70 LRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQP  135 (203)
Q Consensus        70 l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~  135 (203)
                      .+|.+++++||+|||++|+++|.+||.+|..||++|||||+.||++||+.++++.++. +..++++
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~   67 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP   67 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence            5789999999999999999999999999999999999999999999999999998777 4444443

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.75  E-value=8.7e-19  Score=118.96  Aligned_cols=66  Identities=20%  Similarity=0.356  Sum_probs=59.8

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcc-CcCCcccchhhhhcccCCCCCCCCC
Q 028843           15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLRPNIKRGNIS   80 (203)
Q Consensus        15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~l~~~~~~~~WT   80 (203)
                      +..++..++++||+|||++|+++|.+||.++|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus         2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34568889999999999999999999998899999999975 8999999999999999999887754

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.74  E-value=3.3e-18  Score=127.69  Aligned_cols=80  Identities=23%  Similarity=0.310  Sum_probs=73.9

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhh----ccCcCCcccchhhhhcc-----cCCCCCCCCChHH-HHH
Q 028843           17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATES----GLNRCGKSCRLRWLNYL-----RPNIKRGNISDDE-EDL   86 (203)
Q Consensus        17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l-----~~~~~~~~WT~eE-d~~   86 (203)
                      .....++++||+|||+.|+++|++||.++|..|+..+    + +||+.||++||.+++     +|.+++|.|+++| +.+
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~  103 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR  103 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence            4567789999999999999999999988999999975    5 899999999999999     7999999999999 899


Q ss_pred             HHHHHHHhCCc
Q 028843           87 ILRLHKLLGSR   97 (203)
Q Consensus        87 Ll~~v~~~G~~   97 (203)
                      |++++..||++
T Consensus       104 v~~~h~~~g~~  114 (122)
T 2roh_A          104 VLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhhH
Confidence            99999999964

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.74  E-value=8e-19  Score=112.65  Aligned_cols=52  Identities=37%  Similarity=0.742  Sum_probs=48.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCC
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPN   73 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~   73 (203)
                      +++++||+|||++|+++|.+||..+|..||..|+ +||+.||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999778999999999 999999999999999985

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.73  E-value=3.7e-18  Score=109.52  Aligned_cols=51  Identities=25%  Similarity=0.558  Sum_probs=47.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           74 IKRGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      +++++||+|||.+|+++|.+||. +|+.||+.|||||+.||++||.++|+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            46899999999999999999997 9999999999999999999999999873

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.73  E-value=5.1e-18  Score=108.90  Aligned_cols=51  Identities=29%  Similarity=0.704  Sum_probs=48.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           74 IKRGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            47899999999999999999996 6999999999999999999999999873

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.72  E-value=1.4e-17  Score=112.93  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhcccccCCCC
Q 028843           70 LRPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP--GRTDNEIKNYWNSHLSKKINHKHK  130 (203)
Q Consensus        70 l~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--~Rt~~q~k~Rw~~~l~~~~~~~~~  130 (203)
                      ..+..++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||.++|++.+.+...
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            45677899999999999999999999 69999999999  999999999999999999887654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.70  E-value=6.5e-18  Score=112.98  Aligned_cols=57  Identities=21%  Similarity=0.443  Sum_probs=49.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc-cCcCCcccchhhhhcccCCCC
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG-LNRCGKSCRLRWLNYLRPNIK   75 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qcr~Rw~~~l~~~~~   75 (203)
                      ...++++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++|.++
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            456789999999999999999999889999999864 389999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.69  E-value=1.4e-17  Score=110.06  Aligned_cols=55  Identities=22%  Similarity=0.459  Sum_probs=51.6

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCC
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI   74 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~   74 (203)
                      +.+.+++||+|||++|+++|.+||.++|..||+.|+ +||+.||+.||.++|.+..
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence            678999999999999999999999889999999999 9999999999999998653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.68  E-value=3.2e-17  Score=108.25  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=50.4

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      ++.+.+++||+|||++|+++|..|| ++|..||++||+||+.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            4678999999999999999999999 79999999999999999999999988754

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.67  E-value=6.6e-17  Score=104.11  Aligned_cols=49  Identities=22%  Similarity=0.270  Sum_probs=46.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhcc
Q 028843           75 KRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP--GRTDNEIKNYWNSHLSK  123 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--~Rt~~q~k~Rw~~~l~~  123 (203)
                      ++++||+|||++|+++|..|| ++|+.||..||  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999998864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.66  E-value=9.7e-17  Score=107.27  Aligned_cols=53  Identities=23%  Similarity=0.399  Sum_probs=48.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhccccc
Q 028843           74 IKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP--GRTDNEIKNYWNSHLSKKIN  126 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--~Rt~~q~k~Rw~~~l~~~~~  126 (203)
                      .++++||+|||++|+++|.+|| .+|+.||+.+|  |||+.||++||.+++++.++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4789999999999999999999 58999999865  99999999999999987654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.66  E-value=6e-17  Score=106.24  Aligned_cols=52  Identities=25%  Similarity=0.426  Sum_probs=47.8

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      ..+.+++||++||++|+++|.+||.++|..||+.|+.+||+.||+.||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4566899999999999999999998899999999986899999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.3e-16  Score=109.84  Aligned_cols=61  Identities=16%  Similarity=0.134  Sum_probs=55.9

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhC------CchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCC
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLG------SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKT  131 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G------~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t  131 (203)
                      +|.+.+++||+|||++|+++|..||      .+|..||.+|+|||+.||++||+++|.+.++.+...
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~   69 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPV   69 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            5788999999999999999999999      789999999999999999999999999887766543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=6.3e-17  Score=111.43  Aligned_cols=60  Identities=28%  Similarity=0.458  Sum_probs=55.6

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhhccCcCCcccchhhhhcccCCCCCCC
Q 028843           18 KNVVNRGAWTAEEDRKLTEYIEIHGA-----KRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGN   78 (203)
Q Consensus        18 ~~~~~k~~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~   78 (203)
                      +|.++++.||+|||++|+++|.+||.     .+|..||..|+ +||+.||+.||+++|.+.++.|.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            58899999999999999999999996     68999999999 99999999999999998877664

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=3.8e-17  Score=109.83  Aligned_cols=58  Identities=19%  Similarity=0.390  Sum_probs=52.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCC
Q 028843           17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG   77 (203)
Q Consensus        17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~   77 (203)
                      -.|.+++++||+|||++|+++|..+|. +|..||. ++ |||+.||+.||.++|+|.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            358899999999999999999999995 8999999 77 8999999999999999877654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.64  E-value=9.2e-17  Score=103.42  Aligned_cols=50  Identities=26%  Similarity=0.480  Sum_probs=46.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcc-CcCCcccchhhhhccc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLR   71 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~l~   71 (203)
                      ++++||+|||++|+++|.+||.++|..||..|+. +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5799999999999999999998899999999975 6999999999999875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.63  E-value=1.2e-16  Score=109.32  Aligned_cols=59  Identities=20%  Similarity=0.324  Sum_probs=54.0

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCC
Q 028843           16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKR   76 (203)
Q Consensus        16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~   76 (203)
                      +..|.+++++||+|||++|+++|..||. +|..||..|+ +||+.||+.||.+++.+..+.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            4458899999999999999999999995 8999999999 999999999999999876655

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.63  E-value=3.6e-16  Score=102.52  Aligned_cols=50  Identities=26%  Similarity=0.347  Sum_probs=46.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhh
Q 028843           72 PNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP-GRTDNEIKNYWNSHL  121 (203)
Q Consensus        72 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~-~Rt~~q~k~Rw~~~l  121 (203)
                      ..+.+++||++||++|+++|.+|| ++|..||++|+ +||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346689999999999999999999 89999999999 999999999999865

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.36  E-value=1.2e-16  Score=113.56  Aligned_cols=56  Identities=20%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           69 YLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        69 ~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      .+.|.+++|+||+|||++|+++|..||++|+.||..|||||+.||++||++++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999988764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.57  E-value=2.7e-16  Score=117.17  Aligned_cols=82  Identities=16%  Similarity=0.220  Sum_probs=71.0

Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhhc-----ccccCC-CCCCCCCCch
Q 028843           70 LRPNIKRGNISDDEEDLILRLHKLLGS-RWSLIAGR----LPGRTDNEIKNYWNSHLS-----KKINHK-HKTPQQPQQP  138 (203)
Q Consensus        70 l~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~~Rt~~q~k~Rw~~~l~-----~~~~~~-~~t~~e~~~l  138 (203)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |++||+.+|++||+++++     +.++++ +++.++...+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            456778999999999999999999996 99999988    489999999999999998     777775 5555555778


Q ss_pred             hhhhhhCCCCCCc
Q 028843          139 ATTRLKVPENTSE  151 (203)
Q Consensus       139 ~~~~~~~~~~~s~  151 (203)
                      +.+...+|++|+.
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            8888999998887

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.56  E-value=3e-15  Score=122.61  Aligned_cols=78  Identities=18%  Similarity=0.284  Sum_probs=67.8

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhC
Q 028843           72 PNIKRGNISDDEEDLILRLHKLLGSR------WSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKV  145 (203)
Q Consensus        72 ~~~~~~~WT~eEd~~Ll~~v~~~G~~------W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~  145 (203)
                      +.+++++||+|||++|+++|.+||++      |..||+.|||||++|||+||+.+|++.++.. |+.+++..|+....  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~--   80 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD--   80 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence            45788999999999999999999975      9999999999999999999999999999844 99999988877765  


Q ss_pred             CCCCCccc
Q 028843          146 PENTSEIA  153 (203)
Q Consensus       146 ~~~~s~i~  153 (203)
                      |+ |..|+
T Consensus        81 Gn-~ikis   87 (246)
T 1ign_A           81 GN-LIKTK   87 (246)
T ss_dssp             SC-BCEES
T ss_pred             CC-ceeee
Confidence            66 88888

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.52  E-value=1.3e-14  Score=99.13  Aligned_cols=52  Identities=12%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhcc
Q 028843           72 PNIKRGNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSK  123 (203)
Q Consensus        72 ~~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~  123 (203)
                      +...+++||.+||.+|++++..||    .+|..||.+|||||+.||++||..++..
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456789999999999999999999    6899999999999999999999988764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.51  E-value=9.9e-15  Score=99.75  Aligned_cols=59  Identities=22%  Similarity=0.256  Sum_probs=47.7

Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCC
Q 028843           14 DASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKR   76 (203)
Q Consensus        14 ~~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~   76 (203)
                      -..-.|.+++|+||+|||++|+++|.+||. .|..||+.|  |||+.||+.||.. |....+.
T Consensus        14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             -----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            345568999999999999999999999995 599999999  7999999999985 5544443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-14  Score=100.72  Aligned_cols=52  Identities=27%  Similarity=0.521  Sum_probs=48.7

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843           16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   69 (203)
                      +.+....+++||+|||++|+++|.+|| .+|..||.+|+ +||+.||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            456777889999999999999999999 88999999999 99999999999997

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.51  E-value=8.5e-15  Score=109.26  Aligned_cols=79  Identities=18%  Similarity=0.291  Sum_probs=67.2

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhh-----cccccCCCCCCCC-CCchh
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLGS-RWSLIAGR----LPGRTDNEIKNYWNSHL-----SKKINHKHKTPQQ-PQQPA  139 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~~Rt~~q~k~Rw~~~l-----~~~~~~~~~t~~e-~~~l~  139 (203)
                      ....++++||.|||+.|+++|.+||. +|+.|++.    |++||+.+||+||++++     .+.++++.+++++ ...++
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            34557899999999999999999995 99999986    48999999999999999     6788888788777 56777


Q ss_pred             hhhhhCCCCC
Q 028843          140 TTRLKVPENT  149 (203)
Q Consensus       140 ~~~~~~~~~~  149 (203)
                      .+...+|+..
T Consensus       106 ~~h~~~g~~~  115 (122)
T 2roh_A          106 AAQAYWSVDS  115 (122)
T ss_dssp             HHHHHHHSSC
T ss_pred             HHHHHHhhHH
Confidence            7777777643

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.51  E-value=2.2e-14  Score=100.44  Aligned_cols=69  Identities=25%  Similarity=0.472  Sum_probs=58.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhh----hccCcCCcccchhhhhcc-----cCCCCCC-CCChHHHHHHHHHHHH
Q 028843           24 GAWTAEEDRKLTEYIEIHGAKRWKNVATE----SGLNRCGKSCRLRWLNYL-----RPNIKRG-NISDDEEDLILRLHKL   93 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qcr~Rw~~~l-----~~~~~~~-~WT~eEd~~Ll~~v~~   93 (203)
                      ++||+|||+.|+++|.+||.++|..|++.    |+ +||+.+|++||.+++     +|.+++| +..++...+++.+...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999998899999996    67 999999999999987     5776655 6677777878777643

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.50  E-value=1.9e-14  Score=104.81  Aligned_cols=80  Identities=20%  Similarity=0.275  Sum_probs=66.2

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc---cCcCCcccchhhhhcc-----cCCCCCCCCChHHHHH-
Q 028843           16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG---LNRCGKSCRLRWLNYL-----RPNIKRGNISDDEEDL-   86 (203)
Q Consensus        16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qcr~Rw~~~l-----~~~~~~~~WT~eEd~~-   86 (203)
                      ..++..++++||+|||+.|+.+|.+||.++|..|+..++   .+||..+|++||.+++     +|.+++|.-++.|-.. 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            456788999999999999999999999889999999752   3999999999999998     6899999888777544 


Q ss_pred             HHHHHHHhC
Q 028843           87 ILRLHKLLG   95 (203)
Q Consensus        87 Ll~~v~~~G   95 (203)
                      ++++...+|
T Consensus        86 v~~~~~~~~   94 (105)
T 2aje_A           86 VLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.48  E-value=2.1e-14  Score=99.71  Aligned_cols=49  Identities=14%  Similarity=0.209  Sum_probs=45.8

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 028843           72 PNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSH  120 (203)
Q Consensus        72 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~  120 (203)
                      ....+++||+|||.+|+++|.+||.+|..||++|++||+.||++||.++
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3457889999999999999999999999999999999999999999876

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.47  E-value=2.4e-14  Score=97.87  Aligned_cols=56  Identities=13%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhC---CCChhhhhhhhccCcCCcccchhhhhccc
Q 028843           15 ASGKNVVNRGAWTAEEDRKLTEYIEIHG---AKRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      .-.++...+++||++||.+|+.+|..||   ..+|..||..|| |||..||+.||.+++.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3456778899999999999999999999   357999999999 9999999999998654

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.17  E-value=7.8e-15  Score=104.20  Aligned_cols=56  Identities=25%  Similarity=0.490  Sum_probs=51.6

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccC
Q 028843           15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP   72 (203)
Q Consensus        15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~   72 (203)
                      .+..+.+++|+||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|..
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            45568999999999999999999999995 7999999999 99999999999998764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.43  E-value=2.5e-13  Score=98.85  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=47.2

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhCC-chhhhhccC----CCCCHHHHHHHHHHhhc
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLGS-RWSLIAGRL----PGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l----~~Rt~~q~k~Rw~~~l~  122 (203)
                      .+..++++||+|||+.|+++|.+||. +|+.|++.+    ++||+.+|++||+++++
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            34568899999999999999999996 999999965    89999999999999995

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.42  E-value=3e-13  Score=88.79  Aligned_cols=51  Identities=18%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHhhccc
Q 028843           74 IKRGNISDDEEDLILRLHKLLGSRWSLIA---GRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia---~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      -++.+||+||++.|++.|++||.+|+.|+   .++++||..++++||+++.+..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            36789999999999999999999999999   6889999999999999987753

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.42  E-value=1.7e-13  Score=95.88  Aligned_cols=46  Identities=24%  Similarity=0.414  Sum_probs=43.3

Q ss_pred             CCCChHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhhc
Q 028843           77 GNISDDEEDLILRLHKLLGS-RWSLIAGR----LPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~~Rt~~q~k~Rw~~~l~  122 (203)
                      ++||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            48999999999999999996 99999985    899999999999999985

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.30  E-value=1.9e-12  Score=92.32  Aligned_cols=50  Identities=22%  Similarity=0.333  Sum_probs=45.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           75 KRGNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      .+++||.|||.+|++++..||    ++|..||..|||||+++|++||..++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    67999999999999999999999987653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.20  E-value=5.2e-12  Score=90.10  Aligned_cols=48  Identities=19%  Similarity=0.441  Sum_probs=43.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC---CCChhhhhhhhccCcCCcccchhhhhcc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHG---AKRWKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      .++.||+|||++|.+++..||   ...|..||..|| |||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            357899999999999999997   457999999999 999999999999864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=6.7e-11  Score=77.97  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=44.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           75 KRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      ..++||++|+.++++++..||.+|..||..||+||..+|..+|+...+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999986543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=99.10  E-value=6.4e-11  Score=84.10  Aligned_cols=66  Identities=18%  Similarity=0.265  Sum_probs=58.8

Q ss_pred             CcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHhhcccccCC
Q 028843           59 GKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRL-----PGRTDNEIKNYWNSHLSKKINHK  128 (203)
Q Consensus        59 ~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l-----~~Rt~~q~k~Rw~~~l~~~~~~~  128 (203)
                      +.=+.++|.++|.+    ++||.||+..|++++++||.+|..|+..+     ++||..++|+||..+.+..+...
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            35678999999976    89999999999999999999999999998     58999999999999887665443

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.5e-10  Score=76.27  Aligned_cols=53  Identities=17%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc
Q 028843           16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      +.+.....++||++|++++.+++..|| .+|..||..|+ +||..||..+|....
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            445556779999999999999999999 68999999999 999999999997653

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.02  E-value=1.4e-10  Score=76.00  Aligned_cols=50  Identities=16%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhhhhh---hhccCcCCcccchhhhhccc
Q 028843           20 VVNRGAWTAEEDRKLTEYIEIHGAKRWKNVAT---ESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        20 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~---~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      ..++++||+|||+.|++.|++||. +|..|+.   .++ +||...+.+||.+...
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            347899999999999999999996 8999994   555 9999999999998765

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.93  E-value=1.4e-09  Score=73.87  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           73 NIKRGNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        73 ~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      ....++||.||+++|.+++..|+    .+|..||..+ |||..+|+.||..+....
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence            34678999999999999999997    5799999998 999999999999886653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.92  E-value=1.8e-09  Score=87.82  Aligned_cols=50  Identities=12%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcc
Q 028843           74 IKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSK  123 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~  123 (203)
                      ...++||+||+.++++++..||.+|..||+.+++||..||+++|+++.++
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999999987664

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.82  E-value=1.8e-09  Score=73.37  Aligned_cols=50  Identities=20%  Similarity=0.279  Sum_probs=43.3

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhccCcCCcccchhhhhccc
Q 028843           20 VVNRGAWTAEEDRKLTEYIEIHGA---KRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        20 ~~~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      ....+.||.|||++|.+++.+|+.   ..|..||..+  |||..+|+.||..+..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            345678999999999999999983   5699999997  5999999999987654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.80  E-value=8.5e-09  Score=69.98  Aligned_cols=55  Identities=18%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             CCCCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhcccccCCC
Q 028843           75 KRGNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKH  129 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~  129 (203)
                      ....||.+|+.+|.+++..|+    .+|..||..+||||..+|+.||..+++..-..+.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~~~   65 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKH   65 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCCS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccccc
Confidence            346899999999999999997    4699999999999999999999988665544433

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.74  E-value=4.6e-09  Score=68.65  Aligned_cols=48  Identities=27%  Similarity=0.441  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCChhhhhh-hhccCcCCcccchhhhhccc
Q 028843           23 RGAWTAEEDRKLTEYIEIH--------GAKRWKNVAT-ESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      |.+||+|||+.|+++|.++        |..-|+.+|. .++ ++|..+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        4445999999 787 9999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.72  E-value=8.8e-09  Score=69.91  Aligned_cols=48  Identities=23%  Similarity=0.441  Sum_probs=43.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhccCcCCcccchhhhhccc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGA---KRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      ...||++|+++|.+++..|+.   ..|..||..+| +||..+|+.||..++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999974   46999999999 9999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.71  E-value=8.6e-09  Score=92.52  Aligned_cols=46  Identities=13%  Similarity=0.258  Sum_probs=42.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           77 GNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      ..||.+|-.++++++.+||.+|..||..+++||..||+++|.++-+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999986443

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.66  E-value=3.4e-08  Score=64.47  Aligned_cols=47  Identities=23%  Similarity=0.362  Sum_probs=42.5

Q ss_pred             CCCCChHHHHHHHHHHHHh--------CCc-hhhhhc-cCCCCCHHHHHHHHHHhhc
Q 028843           76 RGNISDDEEDLILRLHKLL--------GSR-WSLIAG-RLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~--------G~~-W~~Ia~-~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      +.+||.|||+.|++.|.+|        |+. |..+++ .+|++|-.+||+||.+.|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        433 999999 7999999999999998775

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.64  E-value=1.9e-08  Score=81.69  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=46.5

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhccc
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      .....++||+||+.++++++.+|| ++|..||+.++ +||..||+.+|.++.+
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            345578999999999999999999 78999999999 9999999999998765

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.45  E-value=2.9e-07  Score=78.39  Aligned_cols=99  Identities=17%  Similarity=0.199  Sum_probs=79.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc---------------------------------
Q 028843           24 GAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL---------------------------------   70 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l---------------------------------   70 (203)
                      +.||..+...++.++.+||..+|..||..|+ ++|...++..+.-+.                                 
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999989999999998 899877743221110                                 


Q ss_pred             -----------------cCCCCCCCCChHHHHHHHHHHHHhC----Cchhhhh------------ccCCCCCHHHHHHHH
Q 028843           71 -----------------RPNIKRGNISDDEEDLILRLHKLLG----SRWSLIA------------GRLPGRTDNEIKNYW  117 (203)
Q Consensus        71 -----------------~~~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia------------~~l~~Rt~~q~k~Rw  117 (203)
                                       -+..+...||++||..||-++.+||    +.|..|.            -++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                             0223445899999999999999999    4699996            245679999999999


Q ss_pred             HHhhcc
Q 028843          118 NSHLSK  123 (203)
Q Consensus       118 ~~~l~~  123 (203)
                      ..+++-
T Consensus       270 ~tLi~~  275 (304)
T 1ofc_X          270 NTLITL  275 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988763

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=5.8e-07  Score=59.30  Aligned_cols=49  Identities=14%  Similarity=0.206  Sum_probs=44.9

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLGSRWSLIAG-RLPGRTDNEIKNYWNS  119 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~-~l~~Rt~~q~k~Rw~~  119 (203)
                      .|.+...+||+||-.+..+++..||.+|..|++ .||+||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            366788899999999999999999999999998 6999999999988864

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.31  E-value=1.6e-07  Score=63.30  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=38.5

Q ss_pred             CCCCCChHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHH
Q 028843           75 KRGNISDDEEDLILRLHKLLGS----RWSLIAGRLPGRTDNEIKNYWN  118 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~l~~Rt~~q~k~Rw~  118 (203)
                      ..++||.+|+++|..++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            3568999999999999999974    6999999999999999999884

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.29  E-value=6.1e-07  Score=62.67  Aligned_cols=45  Identities=18%  Similarity=0.349  Sum_probs=42.3

Q ss_pred             CCChHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           78 NISDDEEDLILRLHKLLGS---RWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~G~---~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      .||.|||..||...++-|.   .|..||+.|.+|+++|+++||+.+++
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            5999999999999999996   79999999999999999999998765

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.57  E-value=1.2e-07  Score=62.68  Aligned_cols=44  Identities=14%  Similarity=0.336  Sum_probs=41.2

Q ss_pred             CCChHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           78 NISDDEEDLILRLHKLLGS---RWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~G~---~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      .||.|||..||..+++-|.   .|..||+.| +||++||.+||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999997   799999999 9999999999998765

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.24  E-value=1.4e-07  Score=63.51  Aligned_cols=44  Identities=18%  Similarity=0.346  Sum_probs=39.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhhccCcCCcccchhhh
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAK---RWKNVATESGLNRCGKSCRLRWL   67 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~Rw~   67 (203)
                      ...||.+|+++|.+++..|+..   .|.+||..+| |||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4579999999999999999743   6999999999 999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=1.1e-06  Score=57.86  Aligned_cols=52  Identities=13%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhh-hhccCcCCcccchhhhhc
Q 028843           16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVAT-ESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~   69 (203)
                      +..|......||+||-++..+++.+|| .+|..||+ .++ +|+..+|..-|...
T Consensus         2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            2 SSGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred             CCCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence            345788889999999999999999999 68999999 488 99999998877643

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.11  E-value=2.9e-06  Score=59.90  Aligned_cols=60  Identities=20%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             hhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCC-----CCCHHHHHHHHHHhhcccccC
Q 028843           64 LRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLP-----GRTDNEIKNYWNSHLSKKINH  127 (203)
Q Consensus        64 ~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~-----~Rt~~q~k~Rw~~~l~~~~~~  127 (203)
                      +.|..+|.    ...||.||...|+++++.|+-+|..|+..+.     +||-.++|+||..+.++.+..
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            44555554    3689999999999999999999999998863     799999999999987766543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.01  E-value=8.5e-06  Score=57.89  Aligned_cols=44  Identities=20%  Similarity=0.153  Sum_probs=41.4

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 028843           76 RGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNS  119 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~  119 (203)
                      ...||++|..+..+++..||.+|..||..||+||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            45899999999999999999999999999999999999998874

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.00  E-value=1e-05  Score=54.36  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 028843           75 KRGNISDDEEDLILRLHKLLGSRWSLIAG-RLPGRTDNEIKNYWNS  119 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~-~l~~Rt~~q~k~Rw~~  119 (203)
                      ...+||++|-.+..+++..||.+|..|++ .||+||..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            34689999999999999999999999999 5999999999998874

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.96  E-value=5.5e-06  Score=74.41  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=44.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhccc
Q 028843           20 VVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        20 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      .....+||.+|-+++++++.+|| ++|..||..++ +||..||+..|.++..
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            34578999999999999999999 78999999999 9999999999987543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.73  E-value=1.5e-05  Score=56.40  Aligned_cols=49  Identities=16%  Similarity=0.240  Sum_probs=42.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc----cCcCCcccchhhhhccc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG----LNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l~   71 (203)
                      ....||.||+..|.+++++|+ ..|..|+..+.    .+||..+++.||..+.+
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            448999999999999999999 66999999993    27999999999987543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.71  E-value=1.9e-05  Score=56.07  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=40.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   69 (203)
                      ...||++|.+++.+++..|| ++|..||..|+ +||..+|...|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhcc
Confidence            57899999999999999999 68999999999 99999999887643

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.67  E-value=7e-05  Score=52.27  Aligned_cols=46  Identities=22%  Similarity=0.401  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CChhhhhhhhccCcCCcccchhhhhcc
Q 028843           24 GAWTAEEDRKLTEYIEIHGA--KRWKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      -.||.|||..|+...++.|.  ..|..||+.|+ +|++.|+.+||+..+
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence            47999999999999999986  36999999999 999999999998743

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.65  E-value=3.1e-05  Score=51.98  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=40.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhhhhh-hhccCcCCcccchhhhhc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVAT-ESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~   69 (203)
                      ....||++|-.+..+++..|| .+|..|++ .++ +|+..+|..-|...
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW   53 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHhh
Confidence            447899999999999999999 68999999 588 99999998887643

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.54  E-value=0.00024  Score=57.02  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhC--CCChhhhhhh--hccCcCCcccchhhh-------h---------------------
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHG--AKRWKNVATE--SGLNRCGKSCRLRWL-------N---------------------   68 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--~~~~Rt~~qcr~Rw~-------~---------------------   68 (203)
                      -....||..|-..|+.++.+||  ...|..|+..  +. +++...+..-+.       .                     
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~   83 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG   83 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            3457899999999999999999  4679999865  33 444433321000       0                     


Q ss_pred             -----------------------cc---------------c-----CCCCCCCCChHHHHHHHHHHHHhC-Cchhhhhcc
Q 028843           69 -----------------------YL---------------R-----PNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGR  104 (203)
Q Consensus        69 -----------------------~l---------------~-----~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~  104 (203)
                                             .|               -     +......||.+||..||..+.+|| ++|..|..-
T Consensus        84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A           84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence                                   00               0     011123599999999999999999 999998531


Q ss_pred             ---------C-----CCCCHHHHHHHHHHhhc
Q 028843          105 ---------L-----PGRTDNEIKNYWNSHLS  122 (203)
Q Consensus       105 ---------l-----~~Rt~~q~k~Rw~~~l~  122 (203)
                               +     ..+++..+..|...+|+
T Consensus       164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             hhcCccccccccccccCCChHHHHHHHHHHHH
Confidence                     1     12456678888776554

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.47  E-value=2.9e-05  Score=53.92  Aligned_cols=50  Identities=22%  Similarity=0.597  Sum_probs=40.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---------CChhhhhhhh---ccCcCCcccchhhhhccc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGA---------KRWKNVATES---GLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~---~~~Rt~~qcr~Rw~~~l~   71 (203)
                      +...||.+|-..|+++......         .-|..||..|   |.+||+.||+.+|.++..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            5689999999999999865321         1599999996   357999999999988643

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.47  E-value=0.00025  Score=61.79  Aligned_cols=100  Identities=20%  Similarity=0.262  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc---------------------------------
Q 028843           24 GAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL---------------------------------   70 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l---------------------------------   70 (203)
                      +.||.-+=..++.++.+||..+-..||..|+.+++...++ +|.+.+                                 
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999888999999996467766655 222110                                 


Q ss_pred             -------------------cCC-CCCCCCChHHHHHHHHHHHHhC----Cchhhhhcc------------CCCCCHHHHH
Q 028843           71 -------------------RPN-IKRGNISDDEEDLILRLHKLLG----SRWSLIAGR------------LPGRTDNEIK  114 (203)
Q Consensus        71 -------------------~~~-~~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~------------l~~Rt~~q~k  114 (203)
                                         .++ .+...||++||..||-++.+||    +.|..|-..            +..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                               011 1345799999999999999999    469988322            4679999999


Q ss_pred             HHHHHhhccc
Q 028843          115 NYWNSHLSKK  124 (203)
Q Consensus       115 ~Rw~~~l~~~  124 (203)
                      .|...+++-.
T Consensus       283 rRc~tLi~~I  292 (374)
T 2y9y_A          283 RRGNTLLQCL  292 (374)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.40  E-value=0.00016  Score=50.15  Aligned_cols=54  Identities=17%  Similarity=0.364  Sum_probs=43.6

Q ss_pred             CCCCChHHHHHHHHHHHHhC----------CchhhhhccCC----CCCHHHHHHHHHHhhcccccCCC
Q 028843           76 RGNISDDEEDLILRLHKLLG----------SRWSLIAGRLP----GRTDNEIKNYWNSHLSKKINHKH  129 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G----------~~W~~Ia~~l~----~Rt~~q~k~Rw~~~l~~~~~~~~  129 (203)
                      ...||.+|-..||+++..+.          ..|..||..|.    .||+.||+++|.++.+.......
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~   71 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH   71 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999997642          14999998862    69999999999998887654443

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.37  E-value=3.9e-05  Score=50.69  Aligned_cols=46  Identities=15%  Similarity=0.304  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--ChhhhhhhhccCcCCcccchhhhhccc
Q 028843           24 GAWTAEEDRKLTEYIEIHGAK--RWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      -.||.|||..|+...++.|+.  .|..||+.+  ||++.|+..||...++
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            479999999999999999963  699999988  6999999999987654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.49  E-value=0.01  Score=41.62  Aligned_cols=49  Identities=16%  Similarity=0.256  Sum_probs=41.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc----cCcCCcccchhhhhcc
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG----LNRCGKSCRLRWLNYL   70 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l   70 (203)
                      +....||.||-..|.+++++|+ -.|--|+....    .+|+..+..+||....
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            3447899999999999999999 66999999874    2689999999998754

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.45  E-value=0.034  Score=36.31  Aligned_cols=47  Identities=13%  Similarity=0.030  Sum_probs=40.0

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHh
Q 028843           74 IKRGNISDDEEDLILRLHKLLGSR---WSLIAGRL--PGRTDNEIKNYWNSH  120 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G~~---W~~Ia~~l--~~Rt~~q~k~Rw~~~  120 (203)
                      ..+-.||+|..+..+++|.++|..   +..|.+.|  +|.|..+|+.+.+.+
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            356689999999999999999954   78888776  789999999988765

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.39  E-value=0.047  Score=43.36  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=27.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhh
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATE   52 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~   52 (203)
                      ...||++||..|+-.|.+||.++|..|-.-
T Consensus       134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A          134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence            456999999999999999999999999764

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.97  E-value=0.07  Score=34.82  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=39.4

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCC--Chhhhhhhhcc-CcCCcccchhhhhc
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAK--RWKNVATESGL-NRCGKSCRLRWLNY   69 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~-~Rt~~qcr~Rw~~~   69 (203)
                      +...+-.||+|..+..+.+|...|..  .++.|...|+. +.|..++.-|.+.|
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999943  27899988862 56777777666554

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.43  E-value=0.13  Score=43.65  Aligned_cols=46  Identities=15%  Similarity=0.234  Sum_probs=40.4

Q ss_pred             CCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           77 GNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      +.||..+...++.++..|| .+|..||..|+|+|...|+..+.-...
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            4799999999999999999 679999999999999999776654444

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=93.28  E-value=0.061  Score=44.87  Aligned_cols=29  Identities=31%  Similarity=0.531  Sum_probs=26.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhh
Q 028843           24 GAWTAEEDRKLTEYIEIHGAKRWKNVATE   52 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~   52 (203)
                      ..|+.+||..|+..|.+||.++|..|..-
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            45999999999999999999999999754

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=91.45  E-value=0.14  Score=42.69  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=23.8

Q ss_pred             CCChHHHHHHHHHHHHhC-Cchhhhh
Q 028843           78 NISDDEEDLILRLHKLLG-SRWSLIA  102 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~G-~~W~~Ia  102 (203)
                      .|+.+||..||..|.+|| +.|..|.
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir  195 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIR  195 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHh
Confidence            599999999999999999 9999995

>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}

Probab=81.69  E-value=0.94  Score=33.06  Aligned_cols=57  Identities=16%  Similarity=0.238  Sum_probs=39.8

Q ss_pred             HHHHHHHHhCC-------CChhhhhhhhccCcCC----cccchhhhhcccCCCCCCCCChHHHHHHHHHHH
Q 028843           33 KLTEYIEIHGA-------KRWKNVATESGLNRCG----KSCRLRWLNYLRPNIKRGNISDDEEDLILRLHK   92 (203)
Q Consensus        33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt~----~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~   92 (203)
                      +|-.+|.+.|.       +.|..||..|+...+.    ...+..|.++|.|--   ..+++|-..|.+-|.
T Consensus        46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~  113 (121)
T 2rq5_A           46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL  113 (121)
T ss_dssp             HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence            34455555552       3699999999855443    356888998888643   378899888887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-16
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-08
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-16
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-06
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-14
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	7e-13
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-12
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-12
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-04
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-11
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	5e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-09
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-04
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	4e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	7e-09
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-06
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	6e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	9e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	9e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-04

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (167), Expect = 2e-16
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
          + +G WT EED++L + ++ +G KRW  +A      R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (110), Expect = 3e-08
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 74  IKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLS 122
           + +G  + +E+  +++L +  G  RWS+IA  L GR   + +  W++HL+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (164), Expect = 4e-16
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72
          +  WT EED KL + +E +G   WK +A     NR    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.1 bits (99), Expect = 1e-06
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 76  RGNISDDEEDLILRLHKLLGSR-WSLIAGRLPGRTDNEIKNYWNSHLS 122
           +   + +E++ + +L +  G+  W +IA  LP RTD + ++ W   L+
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.7 bits (152), Expect = 4e-14
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKR-----WKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77
          + ++T EED  + + +  +  +R     +  ++     N  G S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 78 NISDDEEDLILRLHK 92
             D    L+     
Sbjct: 60 YEVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (144), Expect = 7e-13
 Identities = 13/68 (19%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 76  RGNISDDEEDLILRLHKLLGSR------WSLIAGRLPGRTDNEIKNYWNSHLSKKINHKH 129
           + + +D+E++ IL + +   +R      +  I+  +P  T N I++ +  +LSK++ + +
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 130 KTPQQPQQ 137
           +  +  + 
Sbjct: 61  EVDKFGKL 68

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 1e-12
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLR 71
          R AW  EED+ L   +  +G   W  +       NR     + RW    +
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLRPNI 74
          +  WT EE   +   ++ +G   W  ++      NR     + RW    R  +
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 7e-04
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 75  KRGNISDDEEDLILRLHKLLGS-RWSLIA--GRLPGRTDNEIKNYWNSHLSKKIN 126
           K+   + +E + +    +  G   W+ I+       RT   IK+ W +     +N
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 55

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 58.5 bits (141), Expect = 2e-12
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 25 AWTAEEDRKLTEYIEIHGAKRWKNVA---TESGLNRCGKSCRLRWLNYLRPNIKRGN--- 78
           ++  E   L E +E  G  RW++V     ++  +R     + +W   +           
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 79 ---ISDDEEDLILRLHKLLGSR 97
             +  D  D +L  H     +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (131), Expect = 2e-11
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 76  RGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHL 121
           + + +++E+ +I + HK LG+RW+ IA  LPGRTDN IKN+WNS +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (115), Expect = 4e-09
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR 71
          + +WT EEDR + +  +  G +  +    +    R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAE--IAKLLPGRTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 5e-11
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 26 WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEE 84
          WT EE     + +   G +RW  ++   G +R     +     Y +  +K G   +   
Sbjct: 5  WTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 2e-09
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 80  SDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQ 137
           + +E++L  +     G RW+ I+  +  RT  ++K+Y   +   K+          Q+
Sbjct: 6   TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 1e-10
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 71  RPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHK 128
           +        S+ E++            + LIA  L  +T  E   Y+     K  N+K
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK-KNENYK 68

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 26 WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR 71
          W+ +E     E    H  K +  +A+     +    C L +    +
Sbjct: 20 WSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLTKK 63

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 4e-10
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 26 WTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY 69
          WTA+E+  L E +   G   W++VA +    +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 7e-09
 Identities = 7/54 (12%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 80  SDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQ 133
           + +E+ L ++  +  G  +  I+  +  ++  ++KN++ ++  ++ N      +
Sbjct: 9   TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR-RRFNIDEVLQE 61

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 2e-06
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR 71
             WT EE     + I  +G + ++ ++   G N+     +  ++NY R
Sbjct: 5  NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 6e-08
 Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 18 KNVVNRGAWTAEEDRKLTEYIEIHGA---KRWKNVATESGLNRCGKSCRLRW 66
          +       WT  + + L   ++ +       W  +A     ++  + C  R+
Sbjct: 7  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 1e-05
 Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 71  RPNIKRGNISDDEEDLILRLHKLLGS----RWSLIAGRLPGRTDNEIKNYW 117
           R        + +++ L+    +         W  IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 42.6 bits (100), Expect = 9e-07
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 26 WTAEEDRKLTEYIEIHGAK---RWKNVATESGLNRCGKSCRLRWLNYLRPNIKR 76
          W+A+E++     + ++      RW NVA      R  +  +  +   L  +IK 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 37.2 bits (86), Expect = 9e-05
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 80  SDDEEDLILRLHKLLGS----RWSLIAGRLPGRTDNEIKNYWNSHLSKKINH 127
           S  E     R   +       RW+ +A  + GRT  E+K ++   L + I +
Sbjct: 5   SAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 2  APTKSNNNNNNNDASGKNVVNRGAWTAEEDRKLTEYIEIHGA--KRWKNVATESGLNRCG 59
          +      NN+   ++G+ VV    WT E DR +    +  GA    +  ++ + G N+  
Sbjct: 15 SEATVCANNSKVSSTGEKVV---LWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTP 70

Query: 60 KSCRLRWLNYLR 71
               R+   ++
Sbjct: 71 VEVSHRFRELMQ 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 8/41 (19%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 82  DEEDLILRLHKLLGSR---WSLIAGRLPGRTDNEIKNYWNS 119
           + + +IL + +  G++   +S+I+ +L  +T  E+ + +  
Sbjct: 39  EADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.8
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.79
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.77
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.77
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.76
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.76
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.71
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.69
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.65
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.62
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.6
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.6
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.58
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.58
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.54
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.5
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.5
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.49
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.49
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.42
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.41
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.37
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.32
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.31
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.2
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.14
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.01
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.46
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.4
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.24
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.22
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.51
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.24
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.06
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.91
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.69
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.02
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	94.15
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	91.14
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.59
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	80.12

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.4e-20  Score=119.36  Aligned_cols=52  Identities=42%  Similarity=0.862  Sum_probs=49.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCC
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPN   73 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~   73 (203)
                      ++||+||+|||++|+++|.+||.++|..||+.|+ +||+.||+.||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            4789999999999999999999889999999999 999999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=3.7e-22  Score=139.34  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=64.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----ChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHH
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAK-----RWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKL   93 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~-----~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~   93 (203)
                      |+.||+|||++|+++|.+||..     +|..||..|+ |||+.||+.||.++|+|.+++++||.+||.+|++....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999954     4999999999 99999999999999999999999999999998765433

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2e-19  Score=113.97  Aligned_cols=51  Identities=29%  Similarity=0.702  Sum_probs=48.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           74 IKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      +++|+||+|||++|+++|.+|| .+|+.||+.|++||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            5789999999999999999999 68999999999999999999999999874

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.6e-19  Score=125.87  Aligned_cols=70  Identities=19%  Similarity=0.311  Sum_probs=64.7

Q ss_pred             CCCCChHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhC
Q 028843           76 RGNISDDEEDLILRLHKLLGSR------WSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKV  145 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~~------W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~  145 (203)
                      +++||+|||++|+++|..||..      |..||+.|||||+.||++||+++|.+.+++..|+.+++..+......+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            5899999999999999999964      999999999999999999999999999999999999999887765443

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1e-19  Score=114.50  Aligned_cols=50  Identities=38%  Similarity=0.757  Sum_probs=48.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCC
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPN   73 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~   73 (203)
                      |++||++||++|+.+|.+||.++|..||..|+ +||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999998 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=4.9e-19  Score=109.81  Aligned_cols=47  Identities=49%  Similarity=0.884  Sum_probs=45.0

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           76 RGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      +++||+|||++|+++|.+||++|+.||++|||||+.+|++||+.+++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999874

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.1e-18  Score=106.59  Aligned_cols=49  Identities=27%  Similarity=0.562  Sum_probs=46.4

Q ss_pred             CCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           76 RGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      +++||++||++|+++|.+|| ++|..||+.|||||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            57899999999999999999 68999999999999999999999999873

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.69  E-value=5.8e-18  Score=117.25  Aligned_cols=74  Identities=22%  Similarity=0.405  Sum_probs=62.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhh---ccCcCCcccchhhhhccc-----CCCCCCCCChHHHHHHHHHHHHhC
Q 028843           24 GAWTAEEDRKLTEYIEIHGAKRWKNVATES---GLNRCGKSCRLRWLNYLR-----PNIKRGNISDDEEDLILRLHKLLG   95 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~---~~~Rt~~qcr~Rw~~~l~-----~~~~~~~WT~eEd~~Ll~~v~~~G   95 (203)
                      .+||+|||++|+.+|.+||.++|..||+.+   .++||+.||++||.++|+     +..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999998999999863   238999999999999884     677889999877   556666666


Q ss_pred             Cchhh
Q 028843           96 SRWSL  100 (203)
Q Consensus        96 ~~W~~  100 (203)
                      ..|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.2e-17  Score=105.59  Aligned_cols=53  Identities=21%  Similarity=0.406  Sum_probs=48.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhhhhhh--hccCcCCcccchhhhhcccCCCC
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATE--SGLNRCGKSCRLRWLNYLRPNIK   75 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~--~~~~Rt~~qcr~Rw~~~l~~~~~   75 (203)
                      ++++||+|||++|+.+|.+||.++|..||+.  ++ +||+.||++||.++++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999998899999997  44 89999999999999988764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-16  Score=100.38  Aligned_cols=52  Identities=21%  Similarity=0.364  Sum_probs=47.2

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-Cchhhhhcc--CCCCCHHHHHHHHHHhhccccc
Q 028843           75 KRGNISDDEEDLILRLHKLLG-SRWSLIAGR--LPGRTDNEIKNYWNSHLSKKIN  126 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~--l~~Rt~~q~k~Rw~~~l~~~~~  126 (203)
                      ++++||+|||+.|+++|.+|| ++|+.||+.  |++||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            468999999999999999999 589999987  5699999999999999987654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-16  Score=98.32  Aligned_cols=44  Identities=27%  Similarity=0.615  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843           25 AWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY   69 (203)
Q Consensus        25 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~   69 (203)
                      .||++||++|+++|.+||.++|..||+.|+ +||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            499999999999999999889999999999 99999999999886

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.8e-16  Score=98.07  Aligned_cols=47  Identities=28%  Similarity=0.557  Sum_probs=43.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhccc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      |++||+|||++|+++|.+|| .+|..||+.|| |||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHh-hHHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            57999999999999999999 57999999999 9999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.3e-16  Score=97.58  Aligned_cols=48  Identities=23%  Similarity=0.288  Sum_probs=43.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhC-CchhhhhccC--CCCCHHHHHHHHHHhhc
Q 028843           75 KRGNISDDEEDLILRLHKLLG-SRWSLIAGRL--PGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l--~~Rt~~q~k~Rw~~~l~  122 (203)
                      ++++||+|||+.|+++|.+|| ++|+.||+.+  ++||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 5899999875  59999999999998754

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.1e-16  Score=99.07  Aligned_cols=49  Identities=27%  Similarity=0.437  Sum_probs=44.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc-cCcCCcccchhhhhcc
Q 028843           22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG-LNRCGKSCRLRWLNYL   70 (203)
Q Consensus        22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qcr~Rw~~~l   70 (203)
                      ++++||+|||++|+++|.+||.++|..||..++ .+||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999889999998753 3899999999999864

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-15  Score=100.89  Aligned_cols=60  Identities=18%  Similarity=0.256  Sum_probs=53.3

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCC
Q 028843           76 RGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQP  135 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~  135 (203)
                      +..||+|||.+|+++|..||.+|..||++||+||+.||++||+.++++..+.+.....+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~~~   61 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPN   61 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            357999999999999999999999999999999999999999999998877666554443

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.6e-15  Score=92.74  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=41.1

Q ss_pred             CCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHh
Q 028843           78 NISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSH  120 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~  120 (203)
                      .||.+||.+|+++|..|| ++|..||+.|++||+.||++||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6899999999999999999999876

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.50  E-value=1.8e-15  Score=104.44  Aligned_cols=73  Identities=21%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             CCChHHHHHHHHHHHHhC-Cchhhhhcc----CCCCCHHHHHHHHHHhhcccccCCCCCCCCC--CchhhhhhhCCCCCC
Q 028843           78 NISDDEEDLILRLHKLLG-SRWSLIAGR----LPGRTDNEIKNYWNSHLSKKINHKHKTPQQP--QQPATTRLKVPENTS  150 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~----l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~--~~l~~~~~~~~~~~s  150 (203)
                      +||.|||+.|+++|.+|| ++|+.|++.    +++||+.||++||+++|+.......+...+.  ..++..+...+..|+
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~ell~~v~~~~~~ws   81 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWS   81 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999 589999974    6899999999999999975544443333332  234444444444443

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-14  Score=93.77  Aligned_cols=50  Identities=12%  Similarity=0.219  Sum_probs=45.3

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHHHh
Q 028843           71 RPNIKRGNISDDEEDLILRLHKLLGS----RWSLIAGRLPGRTDNEIKNYWNSH  120 (203)
Q Consensus        71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~l~~Rt~~q~k~Rw~~~  120 (203)
                      .+...+++||+|||.+|+++|..||.    +|..||..|||||+.||++||..+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999995    599999999999999999999753

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.5e-15  Score=94.73  Aligned_cols=53  Identities=13%  Similarity=0.273  Sum_probs=47.6

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhhccCcCCcccchhhhh
Q 028843           15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAK---RWKNVATESGLNRCGKSCRLRWLN   68 (203)
Q Consensus        15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~Rw~~   68 (203)
                      ....+...+++||+|||++|+++|..||.+   +|..||..|| +||+.||+.||..
T Consensus         4 ~~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           4 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            355677888999999999999999999965   4999999999 9999999999974

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.9e-15  Score=98.65  Aligned_cols=57  Identities=21%  Similarity=0.390  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChH
Q 028843           24 GAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDD   82 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~e   82 (203)
                      .+||+|||++|+++|..|| .+|..||..|| +||+.||+.||.+++.+..+.+.+...
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            6799999999999999999 68999999999 999999999999999887777766543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6.9e-14  Score=97.49  Aligned_cols=72  Identities=13%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             hhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCc---hhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           52 ESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSR---WSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        52 ~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~---W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      .++ ..+..++..++.+..++......||.|||++||+.++++|.+   |..||+.|+|||+.||++||..+++-.
T Consensus        10 ~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          10 ALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             cCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            345 677788888888878888888899999999999999999977   999999999999999999999877643

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.41  E-value=9.9e-14  Score=90.69  Aligned_cols=46  Identities=24%  Similarity=0.377  Sum_probs=41.9

Q ss_pred             CCCChHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           77 GNISDDEEDLILRLHKLLGS----RWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      .+||+|||.+|++++..||.    +|..||..|||||+.||++||+.++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            48999999999999999995    49999999999999999999976543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.37  E-value=9.4e-14  Score=90.79  Aligned_cols=44  Identities=18%  Similarity=0.425  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hhhhhhhhccCcCCcccchhhhh
Q 028843           24 GAWTAEEDRKLTEYIEIHGAKR---WKNVATESGLNRCGKSCRLRWLN   68 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~~~Rt~~qcr~Rw~~   68 (203)
                      .+||+|||++|+++|..||.+.   |..||..|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5899999999999999999754   999999999 9999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.8e-13  Score=86.79  Aligned_cols=47  Identities=13%  Similarity=0.255  Sum_probs=44.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843           76 RGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      +.+||++|+.+|++++..||.+|..||.+|||||..||+++|....+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999998654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.1e-13  Score=87.23  Aligned_cols=48  Identities=19%  Similarity=0.099  Sum_probs=44.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhh
Q 028843           74 IKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHL  121 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l  121 (203)
                      ....+||+||+.+|++++.+||.+|..||.+|||||..||+++|....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            355789999999999999999999999999999999999999998643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.7e-12  Score=83.49  Aligned_cols=47  Identities=23%  Similarity=0.415  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhccc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      ..+||++||++|..++..|| .+|..||.+|| +||+.||+.+|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            36799999999999999999 67999999999 9999999999988654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5e-12  Score=83.57  Aligned_cols=50  Identities=16%  Similarity=0.217  Sum_probs=44.5

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc
Q 028843           19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      ......+||+|||++|+.+|..|| .+|..||..|| +||..||+.+|....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            444557899999999999999999 68999999999 999999999997653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.8e-10  Score=79.98  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=45.3

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCC--hhhhhhhhccCcCCcccchhhhhcc
Q 028843           18 KNVVNRGAWTAEEDRKLTEYIEIHGAKR--WKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        18 ~~~~~k~~WT~eED~~L~~~v~~~g~~~--W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      ++......||.|||+.|+..++++|...  |..||+.|+ ||++.||+.||...+
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3445677899999999999999999543  999999999 999999999998643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.4e-07  Score=59.47  Aligned_cols=44  Identities=20%  Similarity=0.216  Sum_probs=40.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhhcc-CCCCCHHHHHHHHHHh
Q 028843           77 GNISDDEEDLILRLHKLLGSRWSLIAGR-LPGRTDNEIKNYWNSH  120 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~-l~~Rt~~q~k~Rw~~~  120 (203)
                      ..||+||-.++.+++..||.+|..|++. +|+||..+|.+.|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3799999999999999999999999975 6999999999999753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.6e-07  Score=59.50  Aligned_cols=47  Identities=17%  Similarity=0.260  Sum_probs=41.7

Q ss_pred             CCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843           77 GNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSKK  124 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~  124 (203)
                      +.||.+|+.+|.+++.+|+    .+|..||..+ |||..+|..||..+....
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~   52 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   52 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhc
Confidence            5799999999999999996    5699999999 999999999998765433

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.3e-07  Score=58.74  Aligned_cols=45  Identities=22%  Similarity=0.328  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---ChhhhhhhhccCcCCcccchhhhhcc
Q 028843           24 GAWTAEEDRKLTEYIEIHGAK---RWKNVATESGLNRCGKSCRLRWLNYL   70 (203)
Q Consensus        24 ~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~Rw~~~l   70 (203)
                      +.||++|+.+|.+++.+|..+   .|..||..+  ||+..+|..||..+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v--gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence            579999999999999999743   599999999  599999999997643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.6e-07  Score=57.56  Aligned_cols=43  Identities=19%  Similarity=0.270  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhh-ccCcCCcccchhhhhc
Q 028843           25 AWTAEEDRKLTEYIEIHGAKRWKNVATES-GLNRCGKSCRLRWLNY   69 (203)
Q Consensus        25 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~-~~~Rt~~qcr~Rw~~~   69 (203)
                      .||+||-.++.+++..|| .+|..|++.+ | +|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            699999999999999999 6899999864 6 99999999988754

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=4.7e-05  Score=47.80  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             CCCCChHHHHHHHHHHHHhC--------Cc-hhhhhc-cCCCCCHHHHHHHHHHhhc
Q 028843           76 RGNISDDEEDLILRLHKLLG--------SR-WSLIAG-RLPGRTDNEIKNYWNSHLS  122 (203)
Q Consensus        76 ~~~WT~eEd~~Ll~~v~~~G--------~~-W~~Ia~-~l~~Rt~~q~k~Rw~~~l~  122 (203)
                      +.+||.+||+.|++.|..+.        +. |..+++ .+|.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999873        11 999984 6799999999999998875

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.00012  Score=42.61  Aligned_cols=44  Identities=16%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHh
Q 028843           77 GNISDDEEDLILRLHKLLGSRWSLIA---GRLPGRTDNEIKNYWNSH  120 (203)
Q Consensus        77 ~~WT~eEd~~Ll~~v~~~G~~W~~Ia---~~l~~Rt~~q~k~Rw~~~  120 (203)
                      ..||.||-.-|...|+.+|+.|..|-   .+-|||+...+..+|+.+
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            57999999999999999999999994   334999999999999865

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.9e-05  Score=47.68  Aligned_cols=48  Identities=25%  Similarity=0.400  Sum_probs=40.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------Chhhhhh-hhccCcCCcccchhhhhccc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAK--------RWKNVAT-ESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~--------~W~~Ia~-~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      +.+||.+||+.|++.|.++...        =|+.+++ .++ .+|..+-++||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5689999999999999998532        2999985 456 8999999999998775

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.24  E-value=0.00026  Score=44.94  Aligned_cols=47  Identities=13%  Similarity=0.046  Sum_probs=38.8

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCch---hhhhcc--CCCCCHHHHHHHHHHhh
Q 028843           75 KRGNISDDEEDLILRLHKLLGSRW---SLIAGR--LPGRTDNEIKNYWNSHL  121 (203)
Q Consensus        75 ~~~~WT~eEd~~Ll~~v~~~G~~W---~~Ia~~--l~~Rt~~q~k~Rw~~~l  121 (203)
                      .+-.||+||.++.++++..+|..|   ..|...  ++++|..+|+.+.+.+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            355799999999999999999877   456555  59999999998877653

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.06  E-value=0.00027  Score=44.91  Aligned_cols=49  Identities=16%  Similarity=0.180  Sum_probs=38.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCh--hhhhhhhc-cCcCCcccchhhhhc
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAKRW--KNVATESG-LNRCGKSCRLRWLNY   69 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~~W--~~Ia~~~~-~~Rt~~qcr~Rw~~~   69 (203)
                      ..+-.||+||.++++.+|..+|...|  ..|...|+ .++|..||+-|.+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34568999999999999999996544  57777764 377888998777665

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0023  Score=40.63  Aligned_cols=55  Identities=16%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHhCCc----hhhhhccCCCCCHHHHHHHHHHhhcccccCC
Q 028843           74 IKRGNISDDEEDLILRLHKLLGSR----WSLIAGRLPGRTDNEIKNYWNSHLSKKINHK  128 (203)
Q Consensus        74 ~~~~~WT~eEd~~Ll~~v~~~G~~----W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~  128 (203)
                      ...+.|+++|=++|-.++..+...    |+.||..+..||+..|...|...+...-.++
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~~s~k   64 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQK   64 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCC
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccccccc
Confidence            356789999999999999998744    9999999999999999999998766554433

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00097  Score=42.44  Aligned_cols=48  Identities=23%  Similarity=0.441  Sum_probs=41.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhccCcCCcccchhhhhccc
Q 028843           23 RGAWTAEEDRKLTEYIEIHGA---KRWKNVATESGLNRCGKSCRLRWLNYLR   71 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~   71 (203)
                      -+.|+++|-++|-.++.....   +-|..||..+| .|++..|-..|..-+.
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCcc
Confidence            478999999999999877653   46999999999 9999999999987654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0029  Score=36.61  Aligned_cols=45  Identities=18%  Similarity=0.235  Sum_probs=37.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc--cCcCCcccchhhhh
Q 028843           23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESG--LNRCGKSCRLRWLN   68 (203)
Q Consensus        23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~--~~Rt~~qcr~Rw~~   68 (203)
                      +..||.||-.-|...|+++| ..|..|-=.+|  +||++.....+|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            46799999999999999999 67999987654  48888877777764

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.15  E-value=0.034  Score=39.48  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=26.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCC---hhhhhhhh
Q 028843           21 VNRGAWTAEEDRKLTEYIEIHGAKR---WKNVATES   53 (203)
Q Consensus        21 ~~k~~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~   53 (203)
                      -++..+|.|||.-|+-++.+||.++   |..|-..+
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~I   82 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI   82 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            3445689999999999999999887   88887665

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.14  E-value=0.31  Score=28.84  Aligned_cols=41  Identities=17%  Similarity=0.285  Sum_probs=36.6

Q ss_pred             CCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHH
Q 028843           78 NISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWN  118 (203)
Q Consensus        78 ~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~  118 (203)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Confidence            488999999999999999 68999999999999999887544

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.59  E-value=0.14  Score=30.45  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccc
Q 028843           25 AWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCR   63 (203)
Q Consensus        25 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr   63 (203)
                      .|+.-|=+.++.+..+||..+-..||..|. +++...+.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~-~Kt~eEV~   38 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVI   38 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhc-CCCHHHHH
Confidence            499999999999999999889999999997 78877753

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.12  E-value=0.89  Score=31.79  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=40.6

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhC-Cc---hhhhhc------------cCCCCCHHHHHHHHHHhhcc
Q 028843           73 NIKRGNISDDEEDLILRLHKLLG-SR---WSLIAG------------RLPGRTDNEIKNYWNSHLSK  123 (203)
Q Consensus        73 ~~~~~~WT~eEd~~Ll~~v~~~G-~~---W~~Ia~------------~l~~Rt~~q~k~Rw~~~l~~  123 (203)
                      +.++..+|.|||.-|+-++.+|| .+   |..|-.            ++.+||+..+..|...++.-
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL  112 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHH
Confidence            44555799999999999999999 55   888732            13569999999999987763