Citrus Sinensis ID: 028947

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccHHHccccccccccHHHHHHHccHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEcccHHccHHHHHHHHHHHHHcccccccccHHHccHcccccccHHHHHHHccHHHHHHHHHcccccccccHHHHccccEEEEEcccccEEEEHHHEEcccccccEEccccccccEEEEEEccccccEEEEEEcccccEEEEEEcccccccccEEEEcHHHEEEEEc
Coil and Loop (DISEMBL)
MIMAISHslmsiptamhiSTLSQFESGVKSKlfvsaspslrrpkrVSLSVIRAMgssassqkpdniqeanrvdyasisDEEWKRRLTGEQYYITRQKgteraftgeywntktpgtyhciccdtplfesstkfdsgtgwpsyyqpigsnmkskldlsiifmprQEVLCAVCDAhlghvfddgppptgkrycinsaslklkpk
Flexible Loop (DISEMBL)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLfvsaspslrrpkrVSLSVIRAMgssassqkpdniqeanrvdyasisdeewkrrltgeqyyitrqkgteraftgeywntktpGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHvfddgppptgkrycinsaslklkpk
Low Complexity Region (SEG)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Disordered region (IsUnstruct)
****************************************************************************I*DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDG******RYCI**********
Disordered Region (DISOPRED)
**************AMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAM***********************SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKP*
Disordered Region (DISEMBL)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRA************IQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Disordered Region (DISPRO)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q9C8M2	202	Peptide methionine sulfox	yes	no	0.805	0.801	0.766	8e-71
Q0DC89	214	Peptide methionine sulfox	yes	no	0.616	0.579	0.887	7e-66
Q8DJK9	135	Peptide methionine sulfox	yes	no	0.611	0.911	0.672	3e-46
B0BYW4	131	Peptide methionine sulfox	yes	no	0.611	0.938	0.624	6e-42
C1DRM1	133	Peptide methionine sulfox	yes	no	0.597	0.902	0.608	8e-41
Q2SJP9	139	Peptide methionine sulfox	yes	no	0.626	0.906	0.570	3e-40
Q9I016	132	Peptide methionine sulfox	yes	no	0.606	0.924	0.614	8e-40
Q02NZ0	132	Peptide methionine sulfox	yes	no	0.606	0.924	0.614	8e-40
B7UUZ9	132	Peptide methionine sulfox	yes	no	0.606	0.924	0.614	8e-40
A6V3R3	132	Peptide methionine sulfox	yes	no	0.606	0.924	0.614	1e-39

>sp|Q9C8M2|MSRB1_ARATH Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana GN=MSRB1 PE=1 SV=1

 Score =  266 bits (679), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 147/163 (90%), Gaps = 1/163 (0%)

Query: 36  ASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITR 95
           A  SL +P+ +SLSV     SS+SS KPDN+QEA + ++AS+S+ EWK+RLT EQYYITR
Sbjct: 33  ACRSLSKPRNLSLSVYSMG-SSSSSPKPDNVQEAEKNEFASLSENEWKKRLTPEQYYITR 91

Query: 96  QKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDL 155
           QKGTERAFTGEYWN+KTPG Y+C+CCDTPLF+SSTKFDSGTGWPSYYQPIG+N+K+KLDL
Sbjct: 92  QKGTERAFTGEYWNSKTPGVYNCVCCDTPLFDSSTKFDSGTGWPSYYQPIGNNVKTKLDL 151

Query: 156 SIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 198
           SIIFMPRQEV+CAVC+AHLGHVFDDGP PTGKRYC+NSA+LKL
Sbjct: 152 SIIFMPRQEVVCAVCNAHLGHVFDDGPRPTGKRYCLNSAALKL 194

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Specifically reduces the MetSO R-enantiomer. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. May play an essential function in association with MSRB2 in maintaining vegetative growth during environmental constraints, through the preservation of photosynthetic antennae. MSRB1 and MSRB2 account for most of the leaf peptide MSR capacity.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q0DC89|MSRB1_ORYSJ Peptide methionine sulfoxide reductase B1, chloroplastic OS=Oryza sativa subsp. japonica GN=MSRB1 PE=2 SV=2

 Score =  249 bits (637), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 110/124 (88%), Positives = 118/124 (95%)

Query: 76  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 135
           S++DEEW++RLT +QYYITRQKGTERAFTGEYWNTKTPG YHC+CCDTPLFESSTKFDSG
Sbjct: 88  SLTDEEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSG 147

Query: 136 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 195
           TGWPSYYQPIG N+K KLD+SIIFMPR EVLCAVCDAHLGHVFDDGP PTGKRYCINSAS
Sbjct: 148 TGWPSYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVFDDGPRPTGKRYCINSAS 207

Query: 196 LKLK 199
           LKLK
Sbjct: 208 LKLK 211

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Involved in abiotic stress response. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8DJK9|MSRB_THEEB Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB PE=3 SV=1

 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 101/125 (80%), Gaps = 2/125 (1%)

Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
           +D EW+ +LT EQYY+TR+KGTERAFTG YWN K PG Y C+CC TPLF S TK+DSGTG
Sbjct: 7   TDAEWQAQLTPEQYYVTRKKGTERAFTGCYWNNKKPGLYSCVCCGTPLFRSETKYDSGTG 66

Query: 138 WPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 196
           WPS++QP+  +N++ + DLS   M R EVLCAVCDAHLGHVF+DGPPPTG RYCINSA+L
Sbjct: 67  WPSFWQPLDPNNIRMERDLS-HGMVRTEVLCAVCDAHLGHVFEDGPPPTGLRYCINSAAL 125

Query: 197 KLKPK 201
              P+
Sbjct: 126 AFVPE 130

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|B0BYW4|MSRB_ACAM1 Peptide methionine sulfoxide reductase MsrB OS=Acaryochloris marina (strain MBIC 11017) GN=msrB PE=3 SV=1

 Score =  170 bits (431), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 97/125 (77%), Gaps = 2/125 (1%)

Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
           +++EW+ +LT EQ+ +TR  GTERAFTGEY + K  GTY C+CC T LF S TKFDSGTG
Sbjct: 7   TEQEWEAQLTPEQFRVTRHHGTERAFTGEYHDLKAAGTYQCVCCGTELFTSDTKFDSGTG 66

Query: 138 WPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 196
           WPS++ P   ++++ K D S+ FM R EVLCAVCDAHLGHVF+DGP PTG RYC+NSA+L
Sbjct: 67  WPSFWAPADKTHVEEKTDRSL-FMVRTEVLCAVCDAHLGHVFNDGPKPTGLRYCMNSAAL 125

Query: 197 KLKPK 201
           K  PK
Sbjct: 126 KFVPK 130

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|C1DRM1|MSRB_AZOVD Peptide methionine sulfoxide reductase MsrB OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrB PE=3 SV=1

 Score =  166 bits (421), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 89/120 (74%)

Query: 82  WKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSY 141
           W+  L+ E++ I R  GTERAF+GEY+ T  PG YHC CCD PLF+S  K+D+G GWPSY
Sbjct: 11  WRELLSDERFRICRLGGTERAFSGEYYATSVPGVYHCACCDAPLFDSDAKYDAGCGWPSY 70

Query: 142 YQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 201
           +QP+ ++  +  D     M R EVLCA CDAHLGHVF DGPPPTG RYCINSASL+LKP+
Sbjct: 71  FQPVAASALTSRDDYSHGMHRIEVLCARCDAHLGHVFPDGPPPTGLRYCINSASLRLKPR 130

Azotobacter vinelandii (strain DJ / ATCC BAA-1303) (taxid: 322710)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q2SJP9|MSRB_HAHCH Peptide methionine sulfoxide reductase MsrB OS=Hahella chejuensis (strain KCTC 2396) GN=msrB PE=3 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 96/128 (75%), Gaps = 2/128 (1%)

Query: 72  VDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTK 131
           +D    SD+EW+++LT EQY +TR KGTER FTGEY++TK  G Y C+CC  PLF S  K
Sbjct: 1   MDKVKKSDQEWRQQLTDEQYRVTRGKGTERPFTGEYYDTKEAGVYVCVCCGEPLFTSENK 60

Query: 132 FDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYC 190
           +DSG GWPS++ P+    +  ++D+S + M R E+LC+ CDAHLGHVFDDGP PTG+RYC
Sbjct: 61  YDSGCGWPSFWAPMDKEKITEEIDMSHM-MVRTEILCSKCDAHLGHVFDDGPQPTGQRYC 119

Query: 191 INSASLKL 198
           +NSASL+ 
Sbjct: 120 VNSASLRF 127

Hahella chejuensis (strain KCTC 2396) (taxid: 349521)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9I016|MSRB_PSEAE Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=msrB PE=3 SV=1

 Score =  163 bits (412), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 88/122 (72%)

Query: 80  EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 139
           + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWP
Sbjct: 9   DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWP 68

Query: 140 SYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 199
           SY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL 
Sbjct: 69  SYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLV 128

Query: 200 PK 201
           P+
Sbjct: 129 PR 130

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q02NZ0|MSRB_PSEAB Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=msrB PE=3 SV=1

 Score =  163 bits (412), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 88/122 (72%)

Query: 80  EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 139
           + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWP
Sbjct: 9   DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWP 68

Query: 140 SYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 199
           SY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL 
Sbjct: 69  SYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLV 128

Query: 200 PK 201
           P+
Sbjct: 129 PR 130

Pseudomonas aeruginosa (strain UCBPP-PA14) (taxid: 208963)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|B7UUZ9|MSRB_PSEA8 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas aeruginosa (strain LESB58) GN=msrB PE=3 SV=1

 Score =  163 bits (412), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 88/122 (72%)

Query: 80  EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 139
           + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWP
Sbjct: 9   DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWP 68

Query: 140 SYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 199
           SY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL 
Sbjct: 69  SYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLV 128

Query: 200 PK 201
           P+
Sbjct: 129 PR 130

Pseudomonas aeruginosa (strain LESB58) (taxid: 557722)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|A6V3R3|MSRB_PSEA7 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas aeruginosa (strain PA7) GN=msrB PE=3 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 87/122 (71%)

Query: 80  EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 139
           + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWP
Sbjct: 9   DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGVYHCTCCGTALFDSDAKYDSGSGWP 68

Query: 140 SYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 199
           SY+QP+      +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL 
Sbjct: 69  SYFQPVDGEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLV 128

Query: 200 PK 201
           P+
Sbjct: 129 PR 130

Pseudomonas aeruginosa (strain PA7) (taxid: 381754)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
225461830	198	PREDICTED: peptide methionine sulfoxide	0.940	0.954	0.808	3e-85
327387767	199	chloroplast methionine sulfoxide reducta	0.945	0.954	0.779	2e-84
156105712	195	chloroplast methionine sulfoxide reducta	0.930	0.958	0.744	3e-79
302142799	149	unnamed protein product [Vitis vinifera]	0.736	0.993	0.919	7e-78
449456547	150	PREDICTED: peptide methionine sulfoxide	0.721	0.966	0.868	2e-73
134252250	148	methionine-R-sulfoxide reductase B4 prot	0.736	1.0	0.871	3e-72
224114858	147	methionine sulfoxide reductase type [Pop	0.726	0.993	0.852	9e-72
359493796	142	PREDICTED: peptide methionine sulfoxide	0.701	0.992	0.865	2e-71
358248144	202	uncharacterized protein LOC100798757 [Gl	0.860	0.856	0.745	4e-71
388512453	201	unknown [Lotus japonicus]	0.945	0.945	0.690	1e-70

>gi|225461830|ref|XP_002285647.1| PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like isoform 1 [Vitis vinifera]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/193 (80%), Positives = 169/193 (87%), Gaps = 4/193 (2%)

Query: 10  MSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASS-QKPDNIQE 68
           +S PT  H+S+ +QF  G K + FVS S +LR+P R   S  R MGSSASS QKPD+IQE
Sbjct: 9   LSFPT-QHVSSKTQFVFGSKPQ-FVSFSGALRKPVRQKFST-RVMGSSASSSQKPDSIQE 65

Query: 69  ANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFES 128
             +VDY SISDEEWK+RLTGEQ+YITRQKGTERAFTGEYWNTKTPG YHCICCDTPLFES
Sbjct: 66  PGKVDYTSISDEEWKKRLTGEQFYITRQKGTERAFTGEYWNTKTPGAYHCICCDTPLFES 125

Query: 129 STKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKR 188
           STKFDSGTGWPSYYQPIG+N+KSKLDLSIIFMPRQEVLCA CDAHLGHVFDDGPPPTGKR
Sbjct: 126 STKFDSGTGWPSYYQPIGNNVKSKLDLSIIFMPRQEVLCAACDAHLGHVFDDGPPPTGKR 185

Query: 189 YCINSASLKLKPK 201
           YCINSASLKLKPK
Sbjct: 186 YCINSASLKLKPK 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327387767|gb|AEA72443.1| chloroplast methionine sulfoxide reductase B1, partial [Carica papaya]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/195 (77%), Positives = 176/195 (90%), Gaps = 5/195 (2%)

Query: 10  MSIPTAMHIST-LSQFESGVKSKLFV-SASPSLRRPKRVSL-SVIRAMGSSASSQKPDNI 66
           +S+PTA  IS+  S  +SG+KS  FV +  P L+  KR SL S IR+MGSSASSQKPD++
Sbjct: 6   LSVPTATLISSSTSCIDSGIKSSSFVLTRFPPLQ--KRASLFSCIRSMGSSASSQKPDSV 63

Query: 67  QEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLF 126
           Q+A ++DYAS +D+EWK+RLTGEQ+YITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLF
Sbjct: 64  QDAGKIDYASWTDDEWKKRLTGEQFYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLF 123

Query: 127 ESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTG 186
           ESSTKFDSGTGWPSYY+P+G+N+KSKLDLSIIFMPRQEVLC+VCDAHLGHVFDDGPPPTG
Sbjct: 124 ESSTKFDSGTGWPSYYEPVGNNVKSKLDLSIIFMPRQEVLCSVCDAHLGHVFDDGPPPTG 183

Query: 187 KRYCINSASLKLKPK 201
           KRYCINSA+L+LKPK
Sbjct: 184 KRYCINSAALRLKPK 198

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156105712|gb|ABU49227.1| chloroplast methionine sulfoxide reductase B1 precursor [Nicotiana tabacum]

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 143/192 (74%), Positives = 168/192 (87%), Gaps = 5/192 (2%)

Query: 11  SIPTAMHISTLSQFESGVKSKLFVSASPSLRRPK-RVSLSVIRAMGSSASSQKPDNIQEA 69
           S+ +A++ S+ SQ  S   S +   A   L RP+ R+S+S IRAMGSSASSQKPD+ Q A
Sbjct: 8   SLSSAVNFSSKSQITSKPLSCVTFGA---LNRPRSRISVS-IRAMGSSASSQKPDSAQGA 63

Query: 70  NRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESS 129
           ++V Y+S+SDEEW+++LT EQ+YITRQKGTERAFTGEYWNTKTPGTYHC+CCDT LFESS
Sbjct: 64  SKVGYSSVSDEEWRKQLTNEQFYITRQKGTERAFTGEYWNTKTPGTYHCVCCDTLLFESS 123

Query: 130 TKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRY 189
           TKFDSGTGWPSYYQP+ +N+KSK+DLSIIFMPRQEV+CAVCDAHLGHVFDDGPPPTGKRY
Sbjct: 124 TKFDSGTGWPSYYQPVDNNVKSKMDLSIIFMPRQEVVCAVCDAHLGHVFDDGPPPTGKRY 183

Query: 190 CINSASLKLKPK 201
           CINSA+LKLKPK
Sbjct: 184 CINSAALKLKPK 195

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142799|emb|CBI20094.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 137/149 (91%), Positives = 143/149 (95%), Gaps = 1/149 (0%)

Query: 54  MGSSASS-QKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKT 112
           MGSSASS QKPD+IQE  +VDY SISDEEWK+RLTGEQ+YITRQKGTERAFTGEYWNTKT
Sbjct: 1   MGSSASSSQKPDSIQEPGKVDYTSISDEEWKKRLTGEQFYITRQKGTERAFTGEYWNTKT 60

Query: 113 PGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDA 172
           PG YHCICCDTPLFESSTKFDSGTGWPSYYQPIG+N+KSKLDLSIIFMPRQEVLCA CDA
Sbjct: 61  PGAYHCICCDTPLFESSTKFDSGTGWPSYYQPIGNNVKSKLDLSIIFMPRQEVLCAACDA 120

Query: 173 HLGHVFDDGPPPTGKRYCINSASLKLKPK 201
           HLGHVFDDGPPPTGKRYCINSASLKLKPK
Sbjct: 121 HLGHVFDDGPPPTGKRYCINSASLKLKPK 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456547|ref|XP_004146010.1| PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like [Cucumis sativus] gi|449532272|ref|XP_004173106.1| PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like [Cucumis sativus]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 138/145 (95%)

Query: 56  SSASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGT 115
           SS+SSQKPD I+EA  V+Y S+SD+EWK+RLTGEQ+YITRQKGTERAFTGEYWNTKT G 
Sbjct: 4   SSSSSQKPDGIKEAGTVNYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEYWNTKTAGI 63

Query: 116 YHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLG 175
           YHCICCDTPLFESSTKFDSGTGWPSYYQP+G N+KSKLDLSIIFMPR+EVLCAVCDAHLG
Sbjct: 64  YHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREEVLCAVCDAHLG 123

Query: 176 HVFDDGPPPTGKRYCINSASLKLKP 200
           HVF+DGPPPTGKRYCINSA+LKLKP
Sbjct: 124 HVFNDGPPPTGKRYCINSAALKLKP 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134252250|gb|ABO64857.1| methionine-R-sulfoxide reductase B4 protein [Capsicum annuum]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/148 (87%), Positives = 142/148 (95%)

Query: 54  MGSSASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTP 113
           MGSSASS K D+ Q ++++DY+SISDEEWK++LT EQ+YITRQKGTERAFTGEYWNTKTP
Sbjct: 1   MGSSASSSKQDSAQGSSQIDYSSISDEEWKKQLTNEQFYITRQKGTERAFTGEYWNTKTP 60

Query: 114 GTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAH 173
           GTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG+N+KSK+DLSIIFMPRQEVLCA CDAH
Sbjct: 61  GTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGNNVKSKMDLSIIFMPRQEVLCAGCDAH 120

Query: 174 LGHVFDDGPPPTGKRYCINSASLKLKPK 201
           LGHVFDDGPPPTGKRYCINSA+LKLKPK
Sbjct: 121 LGHVFDDGPPPTGKRYCINSAALKLKPK 148

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114858|ref|XP_002316875.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|118486330|gb|ABK95006.1| unknown [Populus trichocarpa] gi|222859940|gb|EEE97487.1| methionine sulfoxide reductase type [Populus trichocarpa]

 Score =  275 bits (702), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 127/149 (85%), Positives = 138/149 (92%), Gaps = 3/149 (2%)

Query: 54  MGSSASS-QKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKT 112
           MGSSASS QKPDN Q    V+YAS+SD EWK++LT E++Y+TRQKGTERAF+GEYWNTKT
Sbjct: 1   MGSSASSSQKPDNTQ--GDVNYASVSDGEWKKKLTAEEFYVTRQKGTERAFSGEYWNTKT 58

Query: 113 PGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDA 172
           PGTYHCICC+TPLFESSTKFD GTGWPSYYQPIG+N+KSKLDLSIIFMPRQEVLCA CDA
Sbjct: 59  PGTYHCICCNTPLFESSTKFDRGTGWPSYYQPIGNNVKSKLDLSIIFMPRQEVLCAACDA 118

Query: 173 HLGHVFDDGPPPTGKRYCINSASLKLKPK 201
           HLGHVFDDGPPPTGKRYCINSASLKL PK
Sbjct: 119 HLGHVFDDGPPPTGKRYCINSASLKLNPK 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493796|ref|XP_003634669.1| PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like isoform 2 [Vitis vinifera]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 136/149 (91%), Gaps = 8/149 (5%)

Query: 54  MGSSASS-QKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKT 112
           MGSSASS QKPD+IQE  +VDY SISDEEWK+RLTGEQ+YITRQKGTERAFTGEYWNTKT
Sbjct: 1   MGSSASSSQKPDSIQEPGKVDYTSISDEEWKKRLTGEQFYITRQKGTERAFTGEYWNTKT 60

Query: 113 PGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDA 172
           PG YHCICCDTPLF+       GTGWPSYYQPIG+N+KSKLDLSIIFMPRQEVLCA CDA
Sbjct: 61  PGAYHCICCDTPLFD-------GTGWPSYYQPIGNNVKSKLDLSIIFMPRQEVLCAACDA 113

Query: 173 HLGHVFDDGPPPTGKRYCINSASLKLKPK 201
           HLGHVFDDGPPPTGKRYCINSASLKLKPK
Sbjct: 114 HLGHVFDDGPPPTGKRYCINSASLKLKPK 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248144|ref|NP_001239824.1| uncharacterized protein LOC100798757 [Glycine max] gi|255640509|gb|ACU20540.1| unknown [Glycine max]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 154/181 (85%), Gaps = 8/181 (4%)

Query: 28  VKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQK----PDNIQE---ANRVDYASISDE 80
           + SK  +  S +  +P+R+S S IRAMGSSASS       D+++    A+ +DY S++DE
Sbjct: 22  LDSKFLLWPSCAHIKPRRISTS-IRAMGSSASSHSQSQYADSVESEAGADTIDYKSLTDE 80

Query: 81  EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPS 140
           EWK+RLT EQ+YITRQKGTERAFTGEYWNTKTPG YHCICCDTPLFESSTKF+SGTGWPS
Sbjct: 81  EWKKRLTNEQFYITRQKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFNSGTGWPS 140

Query: 141 YYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKP 200
           YYQ IG N+KSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKR+CINSA+LKLKP
Sbjct: 141 YYQTIGKNVKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRFCINSAALKLKP 200

Query: 201 K 201
           K
Sbjct: 201 K 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512453|gb|AFK44288.1| unknown [Lotus japonicus]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 159/197 (80%), Gaps = 7/197 (3%)

Query: 10  MSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASS-----QKPD 64
           +S+PT MH++++          L   + P+  +  R+S S IRAMGSSASS      K +
Sbjct: 6   LSLPT-MHVASIKLIPKLDSKVLLCPSPPAYTKLTRIS-SSIRAMGSSASSQSNQADKIE 63

Query: 65  NIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTP 124
               A  VDY S+S++EWK+RLT EQ+Y+TRQKGTERAFTGEYWNTKTPGTY+CICCDTP
Sbjct: 64  TQSGAGSVDYKSLSNDEWKKRLTNEQFYVTRQKGTERAFTGEYWNTKTPGTYNCICCDTP 123

Query: 125 LFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPP 184
           LFESS+KF+SGTGWPSY QPIG+N+KSKLDLS+IFMPRQEVLCAVCDAHLGHVFDDGPPP
Sbjct: 124 LFESSSKFNSGTGWPSYDQPIGNNVKSKLDLSVIFMPRQEVLCAVCDAHLGHVFDDGPPP 183

Query: 185 TGKRYCINSASLKLKPK 201
           TGKRYCINSASLKLK K
Sbjct: 184 TGKRYCINSASLKLKTK 200

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2024817	202	MSRB1 "methionine sulfoxide re	0.965	0.960	0.683	6.1e-71
UNIPROTKB|Q0DC89	214	MSRB1 "Peptide methionine sulf	0.741	0.696	0.756	1.2e-63
UNIPROTKB|Q74B11	137	msrB "Peptide methionine sulfo	0.597	0.875	0.614	2.6e-38
TIGR_CMR|GSU_2451	137	GSU_2451 "PilB-related protein	0.597	0.875	0.614	2.6e-38
UNIPROTKB|Q885Q1	131	msrB "Peptide methionine sulfo	0.601	0.923	0.617	1.1e-37
MGI|MGI:1923717	175	Msrb2 "methionine sulfoxide re	0.756	0.868	0.465	3e-37
RGD|1306026	174	Msrb2 "methionine sulfoxide re	0.616	0.712	0.518	1.5e-35
UNIPROTKB|E1BMD3	191	MSRB3 "Uncharacterized protein	0.611	0.643	0.569	1.9e-35
UNIPROTKB|E1C1X3	184	MSRB3 "Uncharacterized protein	0.611	0.668	0.569	3.1e-35
UNIPROTKB|Q8IXL7	192	MSRB3 "Methionine-R-sulfoxide	0.825	0.864	0.455	3.1e-35

TAIR|locus:2024817 MSRB1 "methionine sulfoxide reductase B 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 134/196 (68%), Positives = 163/196 (83%)

Query:     3 MAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQK 62
             MA S  L  I ++  +S  ++     K+     A  SL +P+ +SLSV  +MGSS+SS K
Sbjct:     1 MASSTRLTIIQSSF-VSARTRLNYVSKTNHSGFACRSLSKPRNLSLSVY-SMGSSSSSPK 58

Query:    63 PDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCD 122
             PDN+QEA + ++AS+S+ EWK+RLT EQYYITRQKGTERAFTGEYWN+KTPG Y+C+CCD
Sbjct:    59 PDNVQEAEKNEFASLSENEWKKRLTPEQYYITRQKGTERAFTGEYWNSKTPGVYNCVCCD 118

Query:   123 TPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP 182
             TPLF+SSTKFDSGTGWPSYYQPIG+N+K+KLDLSIIFMPRQEV+CAVC+AHLGHVFDDGP
Sbjct:   119 TPLFDSSTKFDSGTGWPSYYQPIGNNVKTKLDLSIIFMPRQEVVCAVCNAHLGHVFDDGP 178

Query:   183 PPTGKRYCINSASLKL 198
              PTGKRYC+NSA+LKL
Sbjct:   179 RPTGKRYCLNSAALKL 194

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

UNIPROTKB|Q0DC89 MSRB1 "Peptide methionine sulfoxide reductase B1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 121/160 (75%), Positives = 134/160 (83%)

Query:    51 IRAMG-----SSASSQKPD-----NIQEANRVDYA-SISDEEWKRRLTGEQYYITRQKGT 99
             +RAMG     SS+SS  P        Q   + +Y+ S++DEEW++RLT +QYYITRQKGT
Sbjct:    52 VRAMGAASSSSSSSSSSPSPQGQAQAQAQGKPNYSTSLTDEEWRKRLTKDQYYITRQKGT 111

Query:   100 ERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIF 159
             ERAFTGEYWNTKTPG YHC+CCDTPLFESSTKFDSGTGWPSYYQPIG N+K KLD+SIIF
Sbjct:   112 ERAFTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSGTGWPSYYQPIGDNVKCKLDMSIIF 171

Query:   160 MPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 199
             MPR EVLCAVCDAHLGHVFDDGP PTGKRYCINSASLKLK
Sbjct:   172 MPRTEVLCAVCDAHLGHVFDDGPRPTGKRYCINSASLKLK 211

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

UNIPROTKB|Q74B11 msrB "Peptide methionine sulfoxide reductase MsrB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query:    78 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
             +D +W+ +LT EQY ITR+KGTE AFTG YW+    GTY C+CC  PLF+S+ KFDSGTG
Sbjct:     8 TDAQWRGQLTPEQYEITRRKGTEPAFTGAYWDCHDRGTYRCVCCGAPLFDSADKFDSGTG 67

Query:   138 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 196
             WPS+  P+ G  ++S+ D S  FM R EV CA C AHLGH+F DGP PTG+RYCINSASL
Sbjct:    68 WPSFTAPLDGDGVESEEDRSF-FMHRTEVHCASCGAHLGHLFPDGPAPTGRRYCINSASL 126

Query:   197 KL 198
              L
Sbjct:   127 VL 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2451 GSU_2451 "PilB-related protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query:    78 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
             +D +W+ +LT EQY ITR+KGTE AFTG YW+    GTY C+CC  PLF+S+ KFDSGTG
Sbjct:     8 TDAQWRGQLTPEQYEITRRKGTEPAFTGAYWDCHDRGTYRCVCCGAPLFDSADKFDSGTG 67

Query:   138 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 196
             WPS+  P+ G  ++S+ D S  FM R EV CA C AHLGH+F DGP PTG+RYCINSASL
Sbjct:    68 WPSFTAPLDGDGVESEEDRSF-FMHRTEVHCASCGAHLGHLFPDGPAPTGRRYCINSASL 126

Query:   197 KL 198
              L
Sbjct:   127 VL 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q885Q1 msrB "Peptide methionine sulfoxide reductase MsrB" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 76/123 (61%), Positives = 90/123 (73%)

Query:    80 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 139
             EEWK  L   QY + R KGTER F+G+Y +TKT G YHCICC+  LF+S+TKFDSG GWP
Sbjct:     9 EEWKEMLDPAQYSVCRLKGTERPFSGKYNDTKTAGVYHCICCNEALFDSTTKFDSGCGWP 68

Query:   140 SYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 198
             S+Y P+ GS +    D+S   M R EV+CA CDAHLGHVF DGPPPTG RYCINS  L+L
Sbjct:    69 SFYAPLEGSAVVEVRDVSH-GMIRTEVVCARCDAHLGHVFPDGPPPTGLRYCINSVCLEL 127

Query:   199 KPK 201
              P+
Sbjct:   128 VPR 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1923717 Msrb2 "methionine sulfoxide reductase B2" [Mus musculus (taxid:10090)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 80/172 (46%), Positives = 110/172 (63%)

Query:    38 PSLRRPKRVSLSVIRAMGSSASSQKPD-NIQEANRVDYASISDEEWKRRLTGEQYYITRQ 96
             P L+ P R+      A G + S  K   ++ ++ R    S+S+ +W+++LT EQ+Y+TR+
Sbjct:    12 PLLQAPGRL------ARGCAGSGSKDTGSLTKSKR----SLSEADWQKKLTPEQFYVTRE 61

Query:    97 KGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSN-------- 148
             KGTE  F+G Y N K  G YHC+CCD+PLF S  K+ SGTGWPS+ +  GS         
Sbjct:    62 KGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTG 121

Query:   149 MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKP 200
             +  +LD S+   PR EV+C  C+AHLGHVF DGP PTG+R+CINS +LK KP
Sbjct:   122 ILRRLDTSL-GCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKP 172

GO:0005739 "mitochondrion" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030091 "protein repair" evidence=IDA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

RGD|1306026 Msrb2 "methionine sulfoxide reductase B2" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 69/133 (51%), Positives = 92/133 (69%)

Query:    76 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 135
             S+S  +W+++LT EQ+Y+TR+KGTE  F+G Y   K  G YHC+CCD+PLF S  K+ SG
Sbjct:    40 SLSKADWQKKLTPEQFYVTREKGTEAPFSGMYLKNKETGMYHCVCCDSPLFSSEKKYCSG 99

Query:   136 TGWPSYYQPIGSN--------MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK 187
             TGWPS+ +  G+         +  +LD S+   PR EV+C  C+AHLGHVF DGP PTG+
Sbjct:   100 TGWPSFSEAHGTKGSDESHTGILRRLDTSL-GCPRMEVVCKQCEAHLGHVFPDGPDPTGQ 158

Query:   188 RYCINSASLKLKP 200
             R+CINS +LK KP
Sbjct:   159 RFCINSVALKFKP 171

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0030091 "protein repair" evidence=IEA;ISO

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|E1BMD3 MSRB3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 70/123 (56%), Positives = 87/123 (70%)

Query:    78 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
             S +E ++RLT  QY++T++KGTE AF GEY + K PG Y C+ C TPLF+S TKFDSG+G
Sbjct:    46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105

Query:   138 WPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 197
             WPS++  I S+  +  D     M R E  C+ C AHLGH+FDDGP PTGKRYCINSASL 
Sbjct:   106 WPSFHDVINSDAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSASLS 165

Query:   198 LKP 200
               P
Sbjct:   166 FSP 168

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

GO:0030091 "protein repair" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1C1X3 MSRB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 70/123 (56%), Positives = 86/123 (69%)

Query:    78 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
             S EE ++RLT  QY++T++KGTE AF GEY + K  G Y C+ C TPLF+S TKFDS +G
Sbjct:    39 SQEELRKRLTPLQYHVTQEKGTESAFEGEYTHHKAQGIYKCVVCGTPLFKSETKFDSNSG 98

Query:   138 WPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 197
             WPS+Y  I  +  +  D     M R E+ C+ C AHLGH+FDDGP PTGKRYCINSASL 
Sbjct:    99 WPSFYDVISPDTITLTDDFSYGMHRIEISCSQCGAHLGHIFDDGPRPTGKRYCINSASLS 158

Query:   198 LKP 200
              KP
Sbjct:   159 FKP 161

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030091 "protein repair" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

UNIPROTKB|Q8IXL7 MSRB3 "Methionine-R-sulfoxide reductase B3" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 77/169 (45%), Positives = 105/169 (62%)

Query:    34 VSASPSLRRPKRVSLSVIRAMGSSAS--SQKPDNIQEANRVDYASISDEEWKRRLTGEQY 91
             +S   +L RP  + LS+   +  +A+  S +  + ++         S +E ++RLT  QY
Sbjct:     1 MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVV-FSQQELRKRLTPLQY 59

Query:    92 YITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKS 151
             ++T++KGTE AF GEY + K PG Y C+ C TPLF+S TKFDSG+GWPS++  I S   +
Sbjct:    60 HVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAIT 119

Query:   152 KLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKP 200
               D     M R E  C+ C AHLGH+FDDGP PTGKRYCINSA+L   P
Sbjct:   120 FTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168

GO:0030091 "protein repair" evidence=IDA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3K935	MSRB_PSEPF	1, ., 8, ., 4, ., 1, 2	0.5983	0.6069	0.9312	yes	no
Q47EU6	MSRB_DECAR	1, ., 8, ., 4, ., 1, 2	0.5983	0.6069	0.9242	yes	no
Q2SJP9	MSRB_HAHCH	1, ., 8, ., 4, ., 1, 2	0.5703	0.6268	0.9064	yes	no
B0BYW4	MSRB_ACAM1	1, ., 8, ., 4, ., 1, 2	0.624	0.6119	0.9389	yes	no
B1J4W5	MSRB_PSEPW	1, ., 8, ., 4, ., 1, 2	0.6147	0.6069	0.9172	yes	no
A6V3R3	MSRB_PSEA7	1, ., 8, ., 4, ., 1, 2	0.6147	0.6069	0.9242	yes	no
Q8F7W8	MSRB_LEPIN	1, ., 8, ., 4, ., 1, 2	0.5737	0.6069	0.9312	yes	no
Q02NZ0	MSRB_PSEAB	1, ., 8, ., 4, ., 1, 2	0.6147	0.6069	0.9242	yes	no
Q4ZQC6	MSRB_PSEU2	1, ., 8, ., 4, ., 1, 2	0.6065	0.6069	0.9312	yes	no
Q48FR2	MSRB_PSE14	1, ., 8, ., 4, ., 1, 2	0.6260	0.6019	0.9236	yes	no
A3M4Q3	MSRB_ACIBT	1, ., 8, ., 4, ., 1, 2	0.5737	0.6069	0.8776	yes	no
O26807	MSRB_METTH	1, ., 8, ., 4, ., 1, 2	0.5648	0.6417	0.8543	yes	no
B0KUQ0	MSRB_PSEPG	1, ., 8, ., 4, ., 1, 2	0.5491	0.6069	0.9312	yes	no
Q4K8U5	MSRB_PSEF5	1, ., 8, ., 4, ., 1, 2	0.5983	0.6069	0.9384	yes	no
Q0A706	MSRB_ALHEH	1, ., 8, ., 4, ., 1, 2	0.5901	0.6069	0.9312	yes	no
B7I415	MSRB_ACIB5	1, ., 8, ., 4, ., 1, 2	0.5737	0.6069	0.8776	yes	no
B8GMG5	MSRB_THISH	1, ., 8, ., 4, ., 1, 2	0.568	0.6218	0.9124	yes	no
Q6FAL8	MSRB_ACIAD	1, ., 8, ., 4, ., 1, 2	0.6065	0.6069	0.8776	yes	no
Q9I016	MSRB_PSEAE	1, ., 8, ., 4, ., 1, 2	0.6147	0.6069	0.9242	yes	no
Q92RA4	MSRB1_RHIME	1, ., 8, ., 4, ., 1, 2	0.5076	0.6467	0.9629	yes	no
Q88LQ6	MSRB_PSEPK	1, ., 8, ., 4, ., 1, 2	0.5491	0.6069	0.9312	yes	no
C3K735	MSRB_PSEFS	1, ., 8, ., 4, ., 1, 2	0.6065	0.6069	0.9384	yes	no
Q0DC89	MSRB1_ORYSJ	1, ., 8, ., 4, ., 1, 2	0.8870	0.6169	0.5794	yes	no
B2HYT2	MSRB_ACIBC	1, ., 8, ., 4, ., 1, 2	0.5737	0.6069	0.8776	yes	no
B0VR86	MSRB_ACIBS	1, ., 8, ., 4, ., 1, 2	0.5737	0.6069	0.8776	yes	no
B0VC45	MSRB_ACIBY	1, ., 8, ., 4, ., 1, 2	0.5737	0.6069	0.8776	yes	no
B7H3X2	MSRB_ACIB3	1, ., 8, ., 4, ., 1, 2	0.5737	0.6069	0.8776	yes	no
B7UUZ9	MSRB_PSEA8	1, ., 8, ., 4, ., 1, 2	0.6147	0.6069	0.9242	yes	no
Q8DJK9	MSRB_THEEB	1, ., 8, ., 4, ., 1, 2	0.672	0.6119	0.9111	yes	no
A4XVB1	MSRB_PSEMY	1, ., 8, ., 4, ., 1, 2	0.5692	0.6467	0.9923	yes	no
A5GQT3	MSRB_SYNR3	1, ., 8, ., 4, ., 1, 2	0.5348	0.6417	0.9485	yes	no
Q46EH1	MSRB_METBF	1, ., 8, ., 4, ., 1, 2	0.5655	0.6069	0.8591	yes	no
Q1ID16	MSRB_PSEE4	1, ., 8, ., 4, ., 1, 2	0.5819	0.6069	0.9312	yes	no
Q3SJU1	MSRB_THIDA	1, ., 8, ., 4, ., 1, 2	0.5564	0.6169	0.9393	yes	no
Q9C8M2	MSRB1_ARATH	1, ., 8, ., 4, ., 1, 2	0.7668	0.8059	0.8019	yes	no
Q885Q1	MSRB_PSESM	1, ., 8, ., 4, ., 1, 2	0.6178	0.6019	0.9236	yes	no
Q21LK2	MSRB_SACD2	1, ., 8, ., 4, ., 1, 2	0.5590	0.6318	0.9477	yes	no
Q8UGX7	MSRB_AGRT5	1, ., 8, ., 4, ., 1, 2	0.5447	0.6119	0.9111	yes	no
B3PK10	MSRB_CELJU	1, ., 8, ., 4, ., 1, 2	0.5748	0.6218	0.8928	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.4	0.691
4th Layer	1.8.4.12	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
PRK00222	142	PRK00222, PRK00222, methionine sulfoxide reductase	2e-81
COG0229	140	COG0229, COG0229, Conserved domain frequently asso	1e-74
pfam01641	124	pfam01641, SelR, SelR domain	3e-67
TIGR00357	134	TIGR00357, TIGR00357, methionine-R-sulfoxide reduc	1e-65
PRK05550	283	PRK05550, PRK05550, bifunctional methionine sulfox	7e-52
PRK14018	521	PRK14018, PRK14018, trifunctional thioredoxin/meth	5e-37
PRK05508	119	PRK05508, PRK05508, methionine sulfoxide reductase	2e-35

>gnl|CDD|234692 PRK00222, PRK00222, methionine sulfoxide reductase B; Provisional

 Score =  238 bits (609), Expect = 2e-81
 Identities = 76/125 (60%), Positives = 87/125 (69%), Gaps = 2/125 (1%)

Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
           S EEWK++LT EQY +T++ GTER FTGEY + K  G Y CI C  PLF S TKFDSG G
Sbjct: 6   SKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDSGCG 65

Query: 138 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 196
           WPS+ +PI    ++   D S   M R EV CA CD+HLGHVF DGP PTG RYCINSASL
Sbjct: 66  WPSFTKPIDEEAIRELRDTS-HGMVRTEVRCANCDSHLGHVFPDGPKPTGLRYCINSASL 124

Query: 197 KLKPK 201
           K  PK
Sbjct: 125 KFIPK 129

Length = 142

>gnl|CDD|223307 COG0229, COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

 Score =  220 bits (564), Expect = 1e-74
 Identities = 76/126 (60%), Positives = 85/126 (67%), Gaps = 3/126 (2%)

Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
           SDEE K +LT EQY +T+  GTER FTGEY + K  G Y CI C  PLF S  KFDSG G
Sbjct: 5   SDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFDSGCG 64

Query: 138 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTG-KRYCINSAS 195
           WPS+ +PI    +  K D S   M R EV CA CD+HLGHVF DGPPPTG  RYCINSAS
Sbjct: 65  WPSFTKPISPDAITYKEDRS-HGMVRTEVRCANCDSHLGHVFPDGPPPTGGLRYCINSAS 123

Query: 196 LKLKPK 201
           L+  PK
Sbjct: 124 LRFIPK 129

Length = 140

>gnl|CDD|201899 pfam01641, SelR, SelR domain

 Score =  201 bits (513), Expect = 3e-67
 Identities = 74/125 (59%), Positives = 83/125 (66%), Gaps = 3/125 (2%)

Query: 79  DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGW 138
           DEEWK  L+ EQY + R KGTE+ FTGEY +    G Y CI C  PLF S+TKFDSG GW
Sbjct: 1   DEEWKAVLSPEQYRVLRNKGTEKPFTGEYDDHFEEGIYVCIGCGEPLFSSTTKFDSGCGW 60

Query: 139 PSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASL 196
           PS+++PI G  +K   D S   M R EV CA CD HLGHVF DGP  P G RYCINSASL
Sbjct: 61  PSFFEPISGDAIKYTPDRS-HGMRRTEVRCANCDGHLGHVFKDGPKEPGGLRYCINSASL 119

Query: 197 KLKPK 201
           K  P 
Sbjct: 120 KFIPA 124

Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity. Length = 124

>gnl|CDD|129454 TIGR00357, TIGR00357, methionine-R-sulfoxide reductase

 Score =  198 bits (504), Expect = 1e-65
 Identities = 72/125 (57%), Positives = 82/125 (65%), Gaps = 2/125 (1%)

Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
           SDEE K++LT  QY +T+  GTE  FT EYW+ K  G Y  I C  PLF S  KFDSG G
Sbjct: 3   SDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGCG 62

Query: 138 WPSYYQPIGSN-MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 196
           WPS+Y+PI    +  + D S   M R EV C  CDAHLGHVFDDGP PTG RYCINSA+L
Sbjct: 63  WPSFYKPISEEVVAYERDES-HGMIRTEVRCRNCDAHLGHVFDDGPEPTGLRYCINSAAL 121

Query: 197 KLKPK 201
           K  P 
Sbjct: 122 KFIPL 126

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]. Length = 134

>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional

 Score =  167 bits (426), Expect = 7e-52
 Identities = 52/119 (43%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 83  KRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYY 142
            + LT  +Y +   KGTER F+GEY++    G Y C  C  PLF S  KF+SG GWPS+ 
Sbjct: 4   MKSLTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFD 63

Query: 143 QPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASLKLKP 200
             I   +K   D       R E++CA C AHLGHVF+     P   R+C+NSASL   P
Sbjct: 64  DEIPGAVKRLPDADGR---RTEIVCANCGAHLGHVFEGEGLTPKNTRHCVNSASLDFVP 119

Length = 283

>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

 Score =  134 bits (338), Expect = 5e-37
 Identities = 63/129 (48%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 74  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 133
           Y   SD E KR LT EQY IT+   TERAF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 377 YKKPSDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 436

Query: 134 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPP-TGKRYCIN 192
           SG GWPS+ +PI + + ++ D     M R EV     D+HLGHVF DGP    G RYCIN
Sbjct: 437 SGCGWPSFTRPIDAKVVTEHDDFSYNMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCIN 496

Query: 193 SASLKLKPK 201
            ASLK  P 
Sbjct: 497 GASLKFIPL 505

Length = 521

>gnl|CDD|180121 PRK05508, PRK05508, methionine sulfoxide reductase B; Provisional

 Score =  120 bits (303), Expect = 2e-35
 Identities = 51/120 (42%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 83  KRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYY 142
              LT E+  +  +KGTE  F+GEY +    GTY C  C  PL+ S  KF SG GWPS+ 
Sbjct: 1   YNELTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFD 60

Query: 143 QPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFD-DGPPPTGKRYCINSASLKLKPK 201
             I   +K   D       R E++CA C  HLGHVF+ +G  P   R+C+NS SLK  P 
Sbjct: 61  DEIKGAVKRIPDADGR---RTEIVCANCGGHLGHVFEGEGFTPKNTRHCVNSISLKFVPD 117

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
COG0229	140	Conserved domain frequently associated with peptid	100.0
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	100.0
PRK00222	142	methionine sulfoxide reductase B; Provisional	100.0
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	100.0
PRK05508	119	methionine sulfoxide reductase B; Provisional	100.0
KOG0856	146	consensus Predicted pilin-like transcription facto	100.0
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	94.51

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-71  Score=447.70  Aligned_cols=126  Identities=60%  Similarity=1.034  Sum_probs=121.7

Q ss_pred             CCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceeee
Q 028947           75 ASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKL  153 (201)
Q Consensus        75 ~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~~  153 (201)
                      +.++|+|||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++||. ++|+++.
T Consensus         2 ~~~sd~e~~~~Lt~~qy~Vtq~~gTE~pft~~y~~~~~~GiY~c~~cg~pLF~S~~KfdSgcGWPSF~~pi~~~~I~~~~   81 (140)
T COG0229           2 IKPSDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFDSGCGWPSFTKPISPDAITYKE   81 (140)
T ss_pred             CccchHHHHHhcCHHHHHHHHhcCCCCCCCChhhcccCCceEEeecCCCccccccccccCCCCCccccccCCcccceEee
Confidence            457899999999999999999999999999999999999999999999999999999999999999999996 6899999


Q ss_pred             cCCCCCccEEEEEcCCCCCCccccCCCCCCCCC-ceeeeccceeeeeeC
Q 028947          154 DLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTG-KRYCINSASLKLKPK  201 (201)
Q Consensus       154 D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg-~RYCINS~sL~F~p~  201 (201)
                      |.|+ ||.||||+|++||+||||||+|||+||| +|||||||||+|+|+
T Consensus        82 D~S~-gM~RtEVrc~~c~sHLGHVF~DGP~~tgglRYCINSasL~Fip~  129 (140)
T COG0229          82 DRSH-GMVRTEVRCANCDSHLGHVFPDGPPPTGGLRYCINSASLRFIPK  129 (140)
T ss_pred             ccCC-CcEEEEEEecCCCCccccccCCCCCCCCCeeEeecchheeecch
Confidence            9996 9999999999999999999999999998 999999999999984

>TIGR00357 methionine-R-sulfoxide reductase

Probab=100.00  E-value=5.7e-70  Score=439.63  Aligned_cols=124  Identities=58%  Similarity=0.982  Sum_probs=120.5

Q ss_pred             CCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccC-CCCceeeecC
Q 028947           77 ISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI-GSNMKSKLDL  155 (201)
Q Consensus        77 ~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i-~~~V~~~~D~  155 (201)
                      ++|+|||+.|||+||+|+|++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++| +++|+++.|.
T Consensus         2 ~~~~ewr~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~V~~~~D~   81 (134)
T TIGR00357         2 PSDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGCGWPSFYKPISEEVVAYERDE   81 (134)
T ss_pred             CCHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCCCCeEEEccCCCCccccccchhcCCCCCcCcCcccCCCceEEeecC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999 5789999999


Q ss_pred             CCCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947          156 SIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       156 s~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~  201 (201)
                      ++ ||+||||+|++||+||||||+|||+|||+||||||+||+|+|+
T Consensus        82 s~-gm~RtEv~C~~Cg~HLGHVF~DGP~ptg~RyCINs~sL~F~p~  126 (134)
T TIGR00357        82 SH-GMIRTEVRCRNCDAHLGHVFDDGPEPTGLRYCINSAALKFIPL  126 (134)
T ss_pred             CC-CcEEEEEEecCCCCccCcccCCCCCCCCceEeecceeEecccc
Confidence            86 9999999999999999999999999999999999999999984

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=2.9e-69  Score=439.05  Aligned_cols=126  Identities=60%  Similarity=1.057  Sum_probs=121.9

Q ss_pred             CCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceeee
Q 028947           75 ASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKL  153 (201)
Q Consensus        75 ~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~~  153 (201)
                      +.++|+|||+.|||+||+|+|++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|+.+.
T Consensus         3 ~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~~~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~V~~~~   82 (142)
T PRK00222          3 IEKSKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDSGCGWPSFTKPIDEEAIRELR   82 (142)
T ss_pred             ccCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCchhcCCcccccCCCCCcCcCcccCCCceEEee
Confidence            457999999999999999999999999999999999999999999999999999999999999999999995 7899999


Q ss_pred             cCCCCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947          154 DLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       154 D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~  201 (201)
                      |.++ ||.||||+|++||+||||||+|||+|||+||||||+||+|+|+
T Consensus        83 D~s~-gm~RtEv~C~~Cg~HLGHVF~DGP~ptg~RyCINs~sL~F~p~  129 (142)
T PRK00222         83 DTSH-GMVRTEVRCANCDSHLGHVFPDGPKPTGLRYCINSASLKFIPK  129 (142)
T ss_pred             ccCC-CceEEEEEeCCCCCccCcccCCCCCCCCCEeeeceeeEEeecc
Confidence            9886 9999999999999999999999999999999999999999984

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=7.7e-69  Score=428.12  Aligned_cols=122  Identities=66%  Similarity=1.207  Sum_probs=115.2

Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCC-CceeeecCCC
Q 028947           79 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NMKSKLDLSI  157 (201)
Q Consensus        79 d~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~-~V~~~~D~s~  157 (201)
                      |+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++||+||||||||+++|++ +|..+.|.++
T Consensus         1 d~ew~~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~v~~~~D~s~   80 (124)
T PF01641_consen    1 DEEWRKRLTPEQYRVLREKGTERPFSGEYWDHKEEGIYVCAVCGTPLFSSDTKFDSGCGWPSFWQPIPGDAVKEREDFSH   80 (124)
T ss_dssp             -HHHHHHSCHHHHHHHHHTTSSSTTSSGGCCTTSSEEEEETTTS-EEEEGGGEETSSSSSSEESSCSSTTSEEEEEEECT
T ss_pred             CHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEcCCCCCccccCcccccCCcCCccccCcCChHHEEEeccccC
Confidence            789999999999999999999999999999999999999999999999999999999999999999986 8999999886


Q ss_pred             CCccEEEEEcCCCCCCccccCCCCCCC-CCceeeeccceeeeeeC
Q 028947          158 IFMPRQEVLCAVCDAHLGHVFDDGPPP-TGKRYCINSASLKLKPK  201 (201)
Q Consensus       158 ~gm~RtEV~C~~Cg~HLGHVF~DGP~p-tg~RYCINS~sL~F~p~  201 (201)
                       ||+||||+|++||+||||||+|||+| ||+||||||+||+|+|+
T Consensus        81 -g~~R~Ev~C~~Cg~HLGHVF~DGp~~~tg~RyCINS~sL~F~p~  124 (124)
T PF01641_consen   81 -GMVRTEVRCARCGSHLGHVFDDGPPPPTGLRYCINSASLKFIPK  124 (124)
T ss_dssp             -SSEEEEEEETTTCCEEEEEESTSSTTCTSCEEEE-GGGEEEEE-
T ss_pred             -CceEEEEEecCCCCccccEeCCCCCCCCCcEEEeeeeeEEEecC
Confidence             99999999999999999999999987 69999999999999996

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=1.1e-65  Score=407.81  Aligned_cols=115  Identities=44%  Similarity=0.804  Sum_probs=110.2

Q ss_pred             hcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCCCceeeecCCCCCccEE
Q 028947           84 RRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQ  163 (201)
Q Consensus        84 ~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~~V~~~~D~s~~gm~Rt  163 (201)
                      ++|||+||+|+|++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|+.+.|.+   |.||
T Consensus         2 ~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~~D~~---~~Rt   78 (119)
T PRK05508          2 NELTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFDDEIKGAVKRIPDAD---GRRT   78 (119)
T ss_pred             CcCCHHHHHHHHhcCCCCCCCCCCcCcCCCeEEEecCCCCccccccccccCCCCCcccCcccccceEEEecCC---CcEE
Confidence            5899999999999999999999999999999999999999999999999999999999999998999999976   4699


Q ss_pred             EEEcCCCCCCccccCC-CCCCCCCceeeeccceeeeeeC
Q 028947          164 EVLCAVCDAHLGHVFD-DGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       164 EV~C~~Cg~HLGHVF~-DGP~ptg~RYCINS~sL~F~p~  201 (201)
                      ||+|++||+||||||+ |||+|||+|||||||||+|+|+
T Consensus        79 Ev~C~~C~~HLGHVF~d~gp~ptg~RyCINS~sL~F~p~  117 (119)
T PRK05508         79 EIVCANCGGHLGHVFEGEGFTPKNTRHCVNSISLKFVPD  117 (119)
T ss_pred             EEEeCCCCCccCcccCCCCCCCCCCEEeecceeEEeecC
Confidence            9999999999999998 5678999999999999999985

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-64  Score=408.92  Aligned_cols=131  Identities=47%  Similarity=0.855  Sum_probs=124.5

Q ss_pred             cccCCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccC-CCC
Q 028947           70 NRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI-GSN  148 (201)
Q Consensus        70 ~~~~~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i-~~~  148 (201)
                      .+...++++|+|||+.||||||+|||++|||+||+|+|++++++|+|+|++|++|||+|++|||||||||+|++.| +++
T Consensus         9 ~~~~~v~k~~~EWr~~LsPeQ~~v~RekgTE~p~tGey~~~~e~GvY~C~~C~~pLykS~tKfdsgcGWPAF~e~i~~ga   88 (146)
T KOG0856|consen    9 PKTGSVQKNDEEWRKVLSPEQFRVLREKGTERPGTGEYTKHFEEGVYVCAGCGTPLYKSTTKFDSGCGWPAFFEAIGPGA   88 (146)
T ss_pred             CCCcccccCHHHHHhhcCHHHhhhhHhhcccCCCCcccccccCCceEEEeecCCccccccccccCCCCCchhhhccCCCc
Confidence            3455678999999999999999999999999999999999999999999999999999999999999999999999 788


Q ss_pred             ceeeecCCCCCccEEEEEcCCCCCCccccCC-CCCC-CCCceeeeccceeeeeeC
Q 028947          149 MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFD-DGPP-PTGKRYCINSASLKLKPK  201 (201)
Q Consensus       149 V~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~-DGP~-ptg~RYCINS~sL~F~p~  201 (201)
                      |....|.+. +|.|+||+|++||+||||||+ |||. ||++|||||||||+|.|+
T Consensus        89 I~r~~d~s~-~~~R~Ev~Ca~C~~HLGHVF~~eG~~~Pt~~R~CiNS~sL~F~~~  142 (146)
T KOG0856|consen   89 ITRTPDNSR-GGRRTEVSCATCGGHLGHVFKGEGPKTPTDERHCINSVSLKFVPA  142 (146)
T ss_pred             eeeccccCC-CCcceEEEEeecCCceeeeecCCCCCCCCCceeEeeeeeeeeccC
Confidence            998888875 899999999999999999998 9998 999999999999999984

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=2.5e-59  Score=441.95  Aligned_cols=131  Identities=49%  Similarity=0.781  Sum_probs=124.1

Q ss_pred             cccCCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CC
Q 028947           70 NRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SN  148 (201)
Q Consensus        70 ~~~~~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~  148 (201)
                      .+..+..++++|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++
T Consensus       373 ~~~~~~~~~~~~~~~~Lt~~~y~v~~~~gtE~~f~~~~~~~~~~G~y~c~~c~~pLf~s~~Kf~sg~GWPsF~~~i~~~~  452 (521)
T PRK14018        373 DAATYKKPSDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKV  452 (521)
T ss_pred             chhhccCCChHHHhccCCHHHHHHHHhcCCCCCCCCCCcCCCCCEEEEecCCCCccccCcccccCCCCCcccCcccCcCc
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999999997 56


Q ss_pred             ceeeecCCCCCccEEEEEcCCCCCCccccCCCCCC-CCCceeeeccceeeeeeC
Q 028947          149 MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASLKLKPK  201 (201)
Q Consensus       149 V~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~-ptg~RYCINS~sL~F~p~  201 (201)
                      |.++.|.++ ||.||||+|++||+||||||+|||+ |||+||||||+||+|+|+
T Consensus       453 v~~~~d~s~-g~~R~Ev~c~~c~~HLGHvf~dgp~~~~g~RyCiNs~~l~f~~~  505 (521)
T PRK14018        453 VTEHDDFSY-NMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPL  505 (521)
T ss_pred             eEEeeccCC-CceEEEEEECCCCCcCCcccCCCCCCCCCCEeeeceeEEEeecc
Confidence            888899886 9999999999999999999999996 699999999999999984

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=100.00  E-value=6.7e-59  Score=412.31  Aligned_cols=119  Identities=45%  Similarity=0.841  Sum_probs=114.2

Q ss_pred             HHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCCCceeeecCCCCC
Q 028947           80 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIF  159 (201)
Q Consensus        80 ~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~~V~~~~D~s~~g  159 (201)
                      ++||++|||+||+|+|++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|+.+.|.+  |
T Consensus         1 ~~~~~~Lt~~~y~v~r~~gTE~pf~g~~~~~~~~G~y~c~~c~~~LF~s~~Kf~sg~GWPsF~~~~~~~~~~~~d~~--~   78 (283)
T PRK05550          1 MDKMKSLTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFDDEIPGAVKRLPDAD--G   78 (283)
T ss_pred             ChhhhhCCHHHHHHHHhcCCCCCCCCcCcCCCCCcEEEcCCCCchhcCChhhccCCCCCcCcCcccCCccEEEEcCC--C
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999998876  6


Q ss_pred             ccEEEEEcCCCCCCccccCC-CCCCCCCceeeeccceeeeeeC
Q 028947          160 MPRQEVLCAVCDAHLGHVFD-DGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       160 m~RtEV~C~~Cg~HLGHVF~-DGP~ptg~RYCINS~sL~F~p~  201 (201)
                      | ||||+|++||+||||||+ |||+|||+||||||+||+|+|+
T Consensus        79 ~-R~Ev~c~~c~~HLGHvF~ddgp~ptg~RyCiNs~sL~f~p~  120 (283)
T PRK05550         79 R-RTEIVCANCGAHLGHVFEGEGLTPKNTRHCVNSASLDFVPA  120 (283)
T ss_pred             c-eEEEEecCCCCccCcccCCCCCCCCCccccccccccccCcc
Confidence            6 999999999999999998 8899999999999999999984

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=94.51  E-value=0.026  Score=42.18  Aligned_cols=81  Identities=19%  Similarity=0.449  Sum_probs=48.9

Q ss_pred             EEEcccCCcccccCCCccc-CCCCCcccc-ccCCCCceeeecCCCCCc-----cEEEEEcCCCCCCccccCCCCCCC---
Q 028947          115 TYHCICCDTPLFESSTKFD-SGTGWPSYY-QPIGSNMKSKLDLSIIFM-----PRQEVLCAVCDAHLGHVFDDGPPP---  184 (201)
Q Consensus       115 ~Y~C~~Cg~pLFsS~~KFd-Sg~GWPSF~-~~i~~~V~~~~D~s~~gm-----~RtEV~C~~Cg~HLGHVF~DGP~p---  184 (201)
                      +|.|+.|.++|=+|..-.. +|..=++|- ..+...+........ |.     .=..+.|++|+.+||=.+...|..   
T Consensus         2 vf~C~~C~t~l~ds~~lvs~~g~~~~a~l~~~v~~~~~~~~~~~t-~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~~~~~   80 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVSFHGREGKAYLFNNVSNGVPVDRELMT-GETGGDHTVRDLFCSGCNTILGWKYESAPEEQKY   80 (96)
T ss_pred             EEECCCCCCCcCCHHHheecCCCCccEEEEeeeeecccccceEEE-eeCCCCEEEEEeEcccCChhHCcEEEEcCHhHhh
Confidence            7999999999987776666 443334432 222222211111000 11     135899999999999999876654   


Q ss_pred             CCceeeecccee
Q 028947          185 TGKRYCINSASL  196 (201)
Q Consensus       185 tg~RYCINS~sL  196 (201)
                      .--+|++.-++|
T Consensus        81 k~g~file~~~i   92 (96)
T PF03226_consen   81 KEGKFILEKASI   92 (96)
T ss_pred             hCCEEEEEhhHE
Confidence            344677666555

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	201
2k8d_A	151	Solution Structure Of A Zinc-Binding Methionine Sul		2e-38
2l1u_A	143	Structure-Functional Analysis Of Mammalian Msrb2 Pr		2e-37
3cez_A	164	Crystal Structure Of Methionine-R-Sulfoxide Reducta		3e-31
3e0o_A	144	Crystal Structure Of Msrb Length = 144		2e-27
2kzn_A	151	Solution Nmr Structure Of Peptide Methionine Sulfox		2e-27
3hcj_A	154	Structure Of Msrb From Xanthomonas Campestris (Oxid		5e-27
3hci_A	154	Structure Of Msrb From Xanthomonas Campestris (Comp		5e-26
3hch_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		2e-25
1l1d_A	152	Crystal Structure Of The C-Terminal Methionine Sulf		4e-25
3hcg_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		6e-25
3e0m_A	313	Crystal Structure Of Fusion Protein Of Msra And Msr		2e-18
3mao_A	105	Crystal Structure Of Human Methionine-R-Sulfoxide R		4e-08
2kv1_A	124	Insights Into Function, Catalytic Mechanism And Fol		6e-08

>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide Reductase Length = 151

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 92/131 (70%), Gaps = 2/131 (1%)
Query: 72  VDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTK 131
           V+   +SD+EW+  L  E + + R+ GTE  FTG+Y +    G Y CICC T LF+S TK
Sbjct: 18  VERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETK 77
Query: 132 FDSGTGWPSYYQPIGS-NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYC 190
           FDSGTGWPS+Y  +   N+K + D S+  M R EVLCA CDAHLGHVFDDGP PTGKRYC
Sbjct: 78  FDSGTGWPSFYDVVSEHNIKLREDRSL-GMVRCEVLCARCDAHLGHVFDDGPRPTGKRYC 136
Query: 191 INSASLKLKPK 201
           +NSA+LK  P+
Sbjct: 137 MNSAALKFIPR 147

>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein Length = 143

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 90/128 (70%), Gaps = 9/128 (7%)
Query: 81  EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPS 140
           +W+++LT EQ+Y+TR+KGTE  F+G Y N K  G YHC+CCD+PLF S  K+ SGTGWPS
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 141 YYQPIGS--------NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCIN 192
           + +  GS         +  +LD S+   PR EV+C  C+AHLGHVF DGP PTG+R+CIN
Sbjct: 63  FSEAYGSKGSDESHTGILRRLDTSLG-CPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCIN 121
Query: 193 SASLKLKP 200
           S +LK KP
Sbjct: 122 SVALKFKP 129

>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei Length = 164

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
            D E +RRLT  QY +T+   TE  FTGEY +T+  G YHC+ C T LFES  K+ SG G
Sbjct: 36  DDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCG 95
Query: 138 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSAS 195
           WPSY++PI G  +  K+D +   M R EV C  C AHLGHVF+DGP   TG RYCINSA+
Sbjct: 96  WPSYFKPIDGEVIDEKMDYT-HGMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAA 154
Query: 196 LKLKPK 201
           L  + K
Sbjct: 155 LNFEAK 160

>pdb|3E0O|A Chain A, Crystal Structure Of Msrb Length = 144

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 76  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 135
           + + EE  + L   QY +T+  GTE  F  EYW+ K  G Y  I    PLF S  KFDS 
Sbjct: 3   AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 62
Query: 136 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 195
            GWPS+ +PI   ++ KLD S   M R EV     D+HLGHVF+DGP P G RYCINSA+
Sbjct: 63  CGWPSFTKPIEEEVEEKLDTSHG-MIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAA 121
Query: 196 LKLKPK 201
           L+  PK
Sbjct: 122 LRFVPK 127

>pdb|2KZN|A Chain A, Solution Nmr Structure Of Peptide Methionine Sulfoxide Reductase Msrb From Bacillus Subtilis, Northeast Structural Genomics Consortium Target Sr10 Length = 151

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 76  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 135
           + + EE  + L   QY +T+  GTE  F  EYW+ K  G Y  I    PLF S  KFDS 
Sbjct: 2   AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 61
Query: 136 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 195
            GWPS+ +PI   ++ KLD S   M R EV     D+HLGHVF+DGP P G RYCINSA+
Sbjct: 62  CGWPSFTKPIEEEVEEKLDTSHG-MIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAA 120
Query: 196 LKLKPK 201
           L+  PK
Sbjct: 121 LRFVPK 126

>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized Form) Length = 154

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 70/113 (61%)
Query: 86  LTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI 145
           L+ E+  +    GTE  F G + + K  G Y C  C  PLF S+ KFDSGTGWPS++ P 
Sbjct: 21  LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 146 GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 198
                 ++  +   M R E++CA CD+HLGHVF DGPPPTG+R+C+NS SL  
Sbjct: 81  DPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAF 133

>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Complex-Like Form) Length = 154

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 69/113 (61%)
Query: 86  LTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI 145
           L+ E+  +    GTE  F G + + K  G Y C  C  PLF S+ KFDSGTGWPS++ P 
Sbjct: 21  LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 146 GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 198
                 ++  +   M R E++CA CD+HLGHVF DGPPPTG+R+ +NS SL  
Sbjct: 81  DPAHVREIRDTSYGMVRTEIVCARCDSHLGHVFPDGPPPTGERHSLNSVSLAF 133

>pdb|3HCH|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Complex With Substrate) Length = 146

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 74  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 133
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 2   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 61
Query: 134 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 192
           SG+GWPS+ +PI +   ++ D     M R EV     D+HLGHVF DGP   G  RY IN
Sbjct: 62  SGSGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYSIN 121
Query: 193 SASLKLKP 200
            ASLK  P
Sbjct: 122 GASLKFIP 129

>pdb|1L1D|A Chain A, Crystal Structure Of The C-Terminal Methionine Sulfoxide Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb Length = 152

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 74  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 133
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 8   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 67
Query: 134 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 192
           SG GWPS+ +PI +   ++ D       R EV     D+HLGHVF DGP   G  RYCIN
Sbjct: 68  SGCGWPSFTRPIDAKSVTEHDDFSFNXRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCIN 127
Query: 193 SASLKLKP 200
            ASLK  P
Sbjct: 128 GASLKFIP 135

>pdb|3HCG|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 146

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 74  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 133
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 2   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 61
Query: 134 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 192
           SG GWPS+ +PI +   ++ D       R EV     D+HLGHVF DGP   G  RYCIN
Sbjct: 62  SGCGWPSFTRPIDAKSVTEHDDFSYNXRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCIN 121
Query: 193 SASLKLKP 200
            ASLK  P
Sbjct: 122 GASLKFIP 129

>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 73  DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKF 132
           +Y   S E  K  L+ E Y +T++  TE  FT  Y  T   G Y  I    PLF +  KF
Sbjct: 167 NYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKF 226
Query: 133 DSGTGWPSYYQPIGSNMKSKL-DLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYC 190
            SG GWPS+ +P+   +     DLS   M R EV      AHLGHVF DGP   G  RYC
Sbjct: 227 ASGCGWPSFSRPLSKELIHYYKDLS-HGMERIEVRSRSGSAHLGHVFTDGPRELGGLRYC 285
Query: 191 INSASLKLKPK 201
           INSASL+   K
Sbjct: 286 INSASLRFVAK 296

>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide Reductase B1 (Msrb1) Length = 105

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 107 YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVL 166
           + N   PG Y C  C   LF S +K+   + WP++ + I ++  +K         R E L
Sbjct: 5   FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE----HNRSEAL 60
Query: 167 ---CAVCDAHLGHVF-DDGPPPTGKRYCINSASLKLKPK 201
              C  C   LGH F +DGP P   R+ I S+SLK  PK
Sbjct: 61  KVSCGKCGNGLGHEFLNDGPKPGQSRFSIFSSSLKFVPK 99

>pdb|2KV1|A Chain A, Insights Into Function, Catalytic Mechanism And Fold Evolution Of Mouse Selenoprotein Methionine Sulfoxide Reductase B1 Through Structural Analysis Length = 124

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 103 FTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMP 161
           F GE + N   PG Y C  C   LF S +K+   + WP++ + I  +  +K         
Sbjct: 7   FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEK----N 62
Query: 162 RQEVL---CAVCDAHLGHVF-DDGPPPTGKRYCINSASLKLKPK 201
           R E L   C  C   LGH F +DGP     R+CI S+SLK  PK
Sbjct: 63  RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFCIFSSSLKFVPK 106
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	5e-87
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	5e-86
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	2e-85
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	4e-85
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	8e-83
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	1e-82
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	6e-63
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	5e-60
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	3e-55

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} Length = 151

 Score =  252 bits (645), Expect = 5e-87
 Identities = 74/135 (54%), Positives = 92/135 (68%), Gaps = 2/135 (1%)

Query: 68  EANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFE 127
               V+   +SD+EW+  L  E + + R+ GTE  FTG+Y +    G Y CICC T LF+
Sbjct: 14  RVEMVERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFD 73

Query: 128 SSTKFDSGTGWPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTG 186
           S TKFDSGTGWPS+Y  +   N+K + D S + M R EVLCA CDAHLGHVFDDGP PTG
Sbjct: 74  SETKFDSGTGWPSFYDVVSEHNIKLREDRS-LGMVRCEVLCARCDAHLGHVFDDGPRPTG 132

Query: 187 KRYCINSASLKLKPK 201
           KRYC+NSA+LK  P+
Sbjct: 133 KRYCMNSAALKFIPR 147

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* Length = 154

 Score =  249 bits (638), Expect = 5e-86
 Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
             +     L+ E+  +    GTE  F G + + K  G Y C  C  PLF S+ KFDSGTG
Sbjct: 13  QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTG 72

Query: 138 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 196
           WPS++ P   ++++   D S   M R E++CA CD+HLGHVF DGPPPTG+R+C+NS SL
Sbjct: 73  WPSFFAPYDPAHVREIRDTS-YGMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSL 131

Query: 197 KLKPK 201
                
Sbjct: 132 AFTED 136

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} PDB: 1xm0_A 2kzn_A Length = 144

 Score =  247 bits (634), Expect = 2e-85
 Identities = 61/124 (49%), Positives = 74/124 (59%), Gaps = 1/124 (0%)

Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
           + EE  + L   QY +T+  GTE  F  EYW+ K  G Y  I    PLF S  KFDS  G
Sbjct: 5   NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 64

Query: 138 WPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 197
           WPS+ +PI   ++ KLD S   M R EV     D+HLGHVF+DGP P G RYCINSA+L+
Sbjct: 65  WPSFTKPIEEEVEEKLDTS-HGMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALR 123

Query: 198 LKPK 201
             PK
Sbjct: 124 FVPK 127

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus} Length = 143

 Score =  246 bits (631), Expect = 4e-85
 Identities = 67/128 (52%), Positives = 87/128 (67%), Gaps = 7/128 (5%)

Query: 81  EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPS 140
           +W+++LT EQ+Y+TR+KGTE  F+G Y N K  G YHC+CCD+PLF S  K+ SGTGWPS
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62

Query: 141 YYQPIGSNMKSKLDLSI-------IFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINS 193
           + +  GS    +    I       +  PR EV+C  C+AHLGHVF DGP PTG+R+CINS
Sbjct: 63  FSEAYGSKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINS 122

Query: 194 ASLKLKPK 201
            +LK KP 
Sbjct: 123 VALKFKPS 130

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A Length = 164

 Score =  241 bits (618), Expect = 8e-83
 Identities = 67/126 (53%), Positives = 82/126 (65%), Gaps = 3/126 (2%)

Query: 78  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 137
            D E +RRLT  QY +T+   TE  FTGEY +T+  G YHC+ C T LFES  K+ SG G
Sbjct: 36  DDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCG 95

Query: 138 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSAS 195
           WPSY++PI G  +  K+D +   M R EV C  C AHLGHVF+DGP   TG RYCINSA+
Sbjct: 96  WPSYFKPIDGEVIDEKMDYT-HGMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAA 154

Query: 196 LKLKPK 201
           L  + K
Sbjct: 155 LNFEAK 160

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A* 1l1d_A Length = 146

 Score =  240 bits (616), Expect = 1e-82
 Identities = 62/130 (47%), Positives = 74/130 (56%), Gaps = 3/130 (2%)

Query: 74  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 133
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 2   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 61

Query: 134 SGTGWPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCI 191
           SG GWPS+ +PI   ++    D S   M R EV     D+HLGHVF DGP    G RYCI
Sbjct: 62  SGCGWPSFTRPIDAKSVTEHDDFS-YNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCI 120

Query: 192 NSASLKLKPK 201
           N ASLK  P 
Sbjct: 121 NGASLKFIPL 130

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens} Length = 105

 Score =  181 bits (463), Expect = 5e-60
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 104 TGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI-GSNMKSKLDLSIIFMP 161
           + E + N   PG Y C  C   LF S +K+   + WP++ + I   ++  + + +     
Sbjct: 1   SMEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN--RSE 58

Query: 162 RQEVLCAVCDAHLGHVF-DDGPPPTGKRYCINSASLKLKPK 201
             +V C  C   LGH F +DGP P   R+ I S+SLK  PK
Sbjct: 59  ALKVSCGKCGNGLGHEFLNDGPKPGQSRFSIFSSSLKFVPK 99

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313

 Score =  177 bits (450), Expect = 3e-55
 Identities = 58/150 (38%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 54  MGSSASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTP 113
            G         +    +  +Y   S E  K  L+ E Y +T++  TE  FT  Y  T   
Sbjct: 148 SGYCHIDVTDADKPLIDAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEE 207

Query: 114 GTYHCICCDTPLFESSTKFDSGTGWPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDA 172
           G Y  I    PLF +  KF SG GWPS+ +P+    +    DLS   M R EV      A
Sbjct: 208 GIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHYYKDLS-HGMERIEVRSRSGSA 266

Query: 173 HLGHVFDDGP-PPTGKRYCINSASLKLKPK 201
           HLGHVF DGP    G RYCINSASL+   K
Sbjct: 267 HLGHVFTDGPRELGGLRYCINSASLRFVAK 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	100.0
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	100.0
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	100.0
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	100.0
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	100.0
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	100.0
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	100.0
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	100.0
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	100.0

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=100.00  E-value=2.1e-71  Score=451.29  Aligned_cols=124  Identities=49%  Similarity=0.843  Sum_probs=120.9

Q ss_pred             CCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCCCceeeecCC
Q 028947           77 ISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLS  156 (201)
Q Consensus        77 ~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~~V~~~~D~s  156 (201)
                      ++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|+++.|.+
T Consensus         4 ~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D~s   83 (144)
T 3e0o_A            4 YNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDTS   83 (144)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEECC
T ss_pred             CCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeecCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999988999999988


Q ss_pred             CCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947          157 IIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       157 ~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~  201 (201)
                      + ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus        84 ~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~  127 (144)
T 3e0o_A           84 H-GMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPK  127 (144)
T ss_dssp             T-TSCEEEEEETTTCCEEEEEESCCSSTTCCEEEECGGGEEEEEH
T ss_pred             C-CceEEEEEcCCCCCccCCccCCCCCCCCCEeeeceeeEeeeec
Confidence            6 9999999999999999999999999999999999999999983

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=7.2e-71  Score=451.06  Aligned_cols=128  Identities=57%  Similarity=1.087  Sum_probs=123.2

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCC-Ccee
Q 028947           73 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NMKS  151 (201)
Q Consensus        73 ~~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~-~V~~  151 (201)
                      ..+.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|++ +|.+
T Consensus        19 ~~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~   98 (151)
T 2k8d_A           19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKL   98 (151)
T ss_dssp             ECSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEEC
T ss_pred             cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEE
Confidence            346789999999999999999999999999999999999999999999999999999999999999999999974 8999


Q ss_pred             eecCCCCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947          152 KLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       152 ~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~  201 (201)
                      +.|.++ ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus        99 ~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~  147 (151)
T 2k8d_A           99 REDRSL-GMVRCEVLCARCDAHLGHVFDDGPRPTGKRYCMNSAALKFIPR  147 (151)
T ss_dssp             CCCBTT-SSCEEEEEETTEEEEEEEEEECSSSSSCEEEEECSTTEEEECS
T ss_pred             eeCCCC-CceEEEEEeCCCCCcCCcccCCCCCCCCCEEeeceeeecccch
Confidence            999986 9999999999999999999999999999999999999999984

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=100.00  E-value=8.5e-70  Score=449.57  Aligned_cols=130  Identities=51%  Similarity=0.908  Sum_probs=123.2

Q ss_pred             ccCCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCC-Cc
Q 028947           71 RVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NM  149 (201)
Q Consensus        71 ~~~~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~-~V  149 (201)
                      +...+.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|++ +|
T Consensus        29 ~~~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V  108 (164)
T 3cxk_A           29 PRYPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVI  108 (164)
T ss_dssp             --CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSE
T ss_pred             cccccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCce
Confidence            34557899999999999999999999999999999999999999999999999999999999999999999999975 68


Q ss_pred             eeeecCCCCCccEEEEEcCCCCCCccccCCCCC-CCCCceeeeccceeeeeeC
Q 028947          150 KSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       150 ~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP-~ptg~RYCINS~sL~F~p~  201 (201)
                      .++.|.++ ||.||||+|++||+||||||+||| +|||+|||||||||+|+|+
T Consensus       109 ~~~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~~ptg~RyCINS~sL~F~p~  160 (164)
T 3cxk_A          109 DEKMDYTH-GMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAALNFEAK  160 (164)
T ss_dssp             EEEEECGG-GCCEEEEEETTTCCEEEEEESCSCTTTTSCEEEECGGGEEEEEC
T ss_pred             EEeECCCC-CcEEEEEEeCCCCCccCcccCCCCCCCCCCEEeeceeeEeeecc
Confidence            89999886 999999999999999999999999 9999999999999999984

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=100.00  E-value=3.6e-70  Score=444.88  Aligned_cols=127  Identities=49%  Similarity=0.790  Sum_probs=121.3

Q ss_pred             CCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceee
Q 028947           74 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSK  152 (201)
Q Consensus        74 ~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~  152 (201)
                      +..++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|.++
T Consensus         2 ~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~   81 (146)
T 3hcg_A            2 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEH   81 (146)
T ss_dssp             CCCCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEE
T ss_pred             CCCCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEe
Confidence            3468999999999999999999999999999999999999999999999999999999999999999999996 578899


Q ss_pred             ecCCCCCccEEEEEcCCCCCCccccCCCCCC-CCCceeeeccceeeeeeC
Q 028947          153 LDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASLKLKPK  201 (201)
Q Consensus       153 ~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~-ptg~RYCINS~sL~F~p~  201 (201)
                      .|.++ ||.||||+|++||+||||||+|||+ |||+|||||||||+|+|+
T Consensus        82 ~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~~~tg~RyCiNS~sL~F~p~  130 (146)
T 3hcg_A           82 DDFSY-NMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPL  130 (146)
T ss_dssp             EEEET-TEEEEEEEETTTCCEEEEEESCSCGGGTSCEEEECGGGEEEEEH
T ss_pred             ecCCC-CcEEEEEEeCCCCCccCceeCCCCCCCCCCEEeeeeEEEEeeeh
Confidence            99886 9999999999999999999999997 599999999999999984

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=100.00  E-value=5.2e-69  Score=441.15  Aligned_cols=122  Identities=45%  Similarity=0.877  Sum_probs=118.2

Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceeeecCCC
Q 028947           79 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSI  157 (201)
Q Consensus        79 d~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~~D~s~  157 (201)
                      .+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|+++.|.++
T Consensus        14 ~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~   93 (154)
T 3hcj_A           14 RDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTSY   93 (154)
T ss_dssp             HHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTTT
T ss_pred             HHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999997 67899999886


Q ss_pred             CCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947          158 IFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       158 ~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~  201 (201)
                       ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus        94 -gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~  136 (154)
T 3hcj_A           94 -GMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAFTED  136 (154)
T ss_dssp             -TTSCEEEEETTTCCEEEEEESCSCTTTTCEEEECGGGEEEEET
T ss_pred             -CceEEEEEeCCCCCccCCccCCCCCCCCCEeeeceeeEEeeeC
Confidence             9999999999999999999999999999999999999999984

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=100.00  E-value=8.4e-70  Score=441.50  Aligned_cols=122  Identities=55%  Similarity=1.130  Sum_probs=118.2

Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccC--------CCCce
Q 028947           79 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI--------GSNMK  150 (201)
Q Consensus        79 d~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i--------~~~V~  150 (201)
                      ++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|        +++|.
T Consensus         1 ~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~   80 (143)
T 2l1u_A            1 MADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGIL   80 (143)
T ss_dssp             CCCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEE
T ss_pred             ChHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceE
Confidence            3689999999999999999999999999999999999999999999999999999999999999999        67899


Q ss_pred             eeecCCCCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947          151 SKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       151 ~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~  201 (201)
                      +..|.++ ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus        81 ~~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~  130 (143)
T 2l1u_A           81 RRLDTSL-GCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS  130 (143)
T ss_dssp             EEEECTT-SSCEEEEEESSSCCCCEEEECCSSCGGGCEEEECCTTEEEEES
T ss_pred             EeecccC-CceEEEEEECCCCCcCCcccCCCCCCCCCEEEeeeeEEeccch
Confidence            9999886 9999999999999999999999999999999999999999984

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=2.3e-64  Score=451.05  Aligned_cols=128  Identities=45%  Similarity=0.669  Sum_probs=123.1

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCcee
Q 028947           73 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKS  151 (201)
Q Consensus        73 ~~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~  151 (201)
                      .+..++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus       167 ~Y~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~  246 (313)
T 3e0m_A          167 NYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHY  246 (313)
T ss_dssp             GGCCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGGEEE
T ss_pred             ccccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCceEE
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999996 67899


Q ss_pred             eecCCCCCccEEEEEcCCCCCCccccCCCCC-CCCCceeeeccceeeeeeC
Q 028947          152 KLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       152 ~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP-~ptg~RYCINS~sL~F~p~  201 (201)
                      +.|.++ ||.||||+|++||+||||||+||| +|||+|||||||||+|+|+
T Consensus       247 ~~D~s~-gm~RtEv~c~~c~~HLGHVF~DGp~~ptg~RyCiNs~sL~F~p~  296 (313)
T 3e0m_A          247 YKDLSH-GMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCINSASLRFVAK  296 (313)
T ss_dssp             EEECCT-TCCEEEEEESSSCCEEEEEESCSCTTTTSCEEEECGGGEEEEEH
T ss_pred             eecCCC-CcEEEEEECCCCCCccCcccCCCCCCCCCCEEeeceeeEeeecc
Confidence            999886 999999999999999999999999 8999999999999999984

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=100.00  E-value=1.7e-54  Score=344.74  Aligned_cols=99  Identities=35%  Similarity=0.694  Sum_probs=90.9

Q ss_pred             CCccCC-CCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCC-CceeeecCCCCCccEEEEEcCCCCCCccccC
Q 028947          101 RAFTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF  178 (201)
Q Consensus       101 ~pfsG~-y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~-~V~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF  178 (201)
                      .+|+|+ |||++++|+|+|++||+|||+|++|||||||||||+++|++ +|.+..|.+  +|.||||+|++||+||||||
T Consensus         5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~--~~~r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A            5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN--RPEALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSS--STTCEEEECTTTTCCCEEEC
T ss_pred             cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccC--CceEEEEEEecCCCccCCcc
Confidence            379999 77889999999999999999999999999999999999975 565556644  68899999999999999999


Q ss_pred             -CCCCCCCCceeeeccceeeeeeC
Q 028947          179 -DDGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       179 -~DGP~ptg~RYCINS~sL~F~p~  201 (201)
                       +|||+|||+|||||||||+|+|+
T Consensus        83 ~~DGP~ptg~RyCINS~sL~F~p~  106 (124)
T 2kv1_A           83 LNDGPKRGQSRFCIFSSSLKFVPK  106 (124)
T ss_dssp             TTSCTTTTCSCEECCTTTEEEEEC
T ss_pred             CCCCCCCCCCEEeecceeeEeEEC
Confidence             89999999999999999999995

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=100.00  E-value=1.1e-53  Score=331.99  Aligned_cols=94  Identities=34%  Similarity=0.687  Sum_probs=89.1

Q ss_pred             CCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceeeecCCCCCccEEEEEcCCCCCCccccC-CCCCC
Q 028947          106 EYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF-DDGPP  183 (201)
Q Consensus       106 ~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF-~DGP~  183 (201)
                      +||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|+++.|.+  +|.||||+|++||+|||||| +|||+
T Consensus         4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~--~~~RtEV~C~~C~~HLGHVF~~DGP~   81 (105)
T 3mao_A            4 VFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN--RSEALKVSCGKCGNGLGHEFLNDGPK   81 (105)
T ss_dssp             CCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTT--STTEEEEEETTTCCEEEEEETTCSSS
T ss_pred             cccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCC--CCCEEEEEeCCCCCccCcccCCCCcC
Confidence            69999999999999999999999999999999999999997 5788888864  58999999999999999999 79999


Q ss_pred             CCCceeeeccceeeeeeC
Q 028947          184 PTGKRYCINSASLKLKPK  201 (201)
Q Consensus       184 ptg~RYCINS~sL~F~p~  201 (201)
                      |||+|||||||||+|+|+
T Consensus        82 ptg~RyCiNS~sL~F~p~   99 (105)
T 3mao_A           82 PGQSRFSIFSSSLKFVPK   99 (105)
T ss_dssp             TTCCEEEECGGGEEEEET
T ss_pred             CCCCEEeeCeeeEEeeec
Confidence            999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d1xm0a1	143	b.88.1.3 (A:1-143) Peptide methionine sulfoxide re	1e-57
d1l1da_	144	b.88.1.3 (A:) C-terminal MsrB domain of peptide me	7e-53

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]} Length = 143

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

 Score =  176 bits (447), Expect = 1e-57
 Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 1/126 (0%)

Query: 76  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 135
           + + EE  + L   QY +T+  GTE  F  EYW+ K  G Y  I    PLF S  KFDS 
Sbjct: 2   AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 61

Query: 136 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 195
            GWPS+ +PI   ++ KLD S   M R EV     D+HLGHVF+DGP P G RYCINSA+
Sbjct: 62  CGWPSFTKPIEEEVEEKLDTS-HGMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAA 120

Query: 196 LKLKPK 201
           L+  PK
Sbjct: 121 LRFVPK 126

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]} Length = 144

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

 Score =  164 bits (416), Expect = 7e-53
 Identities = 61/129 (47%), Positives = 74/129 (57%), Gaps = 1/129 (0%)

Query: 74  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 133
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 1   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 60

Query: 134 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCIN 192
           SG GWPS+ +PI +   ++ D     M R EV     D+HLGHVF DGP    G RYCIN
Sbjct: 61  SGCGWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCIN 120

Query: 193 SASLKLKPK 201
            ASLK  P 
Sbjct: 121 GASLKFIPL 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	100.0
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	100.0

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.7e-68  Score=431.85  Aligned_cols=125  Identities=49%  Similarity=0.840  Sum_probs=121.6

Q ss_pred             CCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCCCceeeecC
Q 028947           76 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDL  155 (201)
Q Consensus        76 ~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~~V~~~~D~  155 (201)
                      .++++||+++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|+...|.
T Consensus         2 ~~~~~e~~~~Lt~~qy~V~r~~gTE~pFtg~y~~~~~~G~Y~C~~C~~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~~D~   81 (143)
T d1xm0a1           2 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDT   81 (143)
T ss_dssp             CCCHHHHHTTCCHHHHHHHHHCCCCCCCSCSSCSCCSSEEEEESSTTCEEEETTTCCCCCSSSCCEEESCCCSEEEECCC
T ss_pred             CCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCcCCCCCceEEeccccchhhhhhhhhccCCccceeecccccceEEEecC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999888998


Q ss_pred             CCCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947          156 SIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  201 (201)
Q Consensus       156 s~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~  201 (201)
                      ++ ||.||||+|++||+||||||+|||+|||+||||||+||+|+|+
T Consensus        82 s~-gm~R~Ev~C~~Cg~HLGHVF~DGp~ptg~RyCINs~sL~F~p~  126 (143)
T d1xm0a1          82 SH-GMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPK  126 (143)
T ss_dssp             CT-TCCCCEEEESSCTTCCCEEEESCSSSSCEEEECCGGGEEEEET
T ss_pred             CC-CccccceEecCCCCccCccCCCCCCCCCcEeeeeeeeEEEEeh
Confidence            86 9999999999999999999999999999999999999999995

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=100.00  E-value=1.5e-67  Score=426.56  Aligned_cols=127  Identities=49%  Similarity=0.797  Sum_probs=119.6

Q ss_pred             CCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCCC-ceee
Q 028947           74 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSN-MKSK  152 (201)
Q Consensus        74 ~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~~-V~~~  152 (201)
                      |..+||+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+++ |.+.
T Consensus         1 y~k~s~~ewk~~Ls~~~y~Vlr~~GTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~   80 (144)
T d1l1da_           1 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEH   80 (144)
T ss_dssp             CCCCCHHHHTTTSCHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSTTSEEEE
T ss_pred             CCCCCHHHHHHhCCHHHHHHHHhcCCCCCCCcccccccccCceEeccccceeeehhhcccCCccceeeccccccccccce
Confidence            456899999999999999999999999999999999999999999999999999999999999999999999875 5667


Q ss_pred             ecCCCCCccEEEEEcCCCCCCccccCCCCCCC-CCceeeeccceeeeeeC
Q 028947          153 LDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPP-TGKRYCINSASLKLKPK  201 (201)
Q Consensus       153 ~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~p-tg~RYCINS~sL~F~p~  201 (201)
                      .|.++ ||.||||+|++||+||||||+|||.| +|+||||||+||+|+|+
T Consensus        81 ~d~s~-gm~R~Ev~C~~Cg~HLGHVF~DGp~~~~~~RyCiNs~sL~F~p~  129 (144)
T d1l1da_          81 DDFSF-NMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPL  129 (144)
T ss_dssp             EECCT-TSCEEEEEETTTCCEEEEEESCSCGGGTSCEEEECGGGEEEEEH
T ss_pred             ecccc-cccceeeEecCCCCccCcccCCCCCCCCCCEeccceeeEEEEeH
Confidence            88775 99999999999999999999999966 68999999999999984