Citrus Sinensis ID: 029008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCLM
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccEEEEccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEcccccHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccccccccccEEEEccccccccccccccccccccEEccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEcccccccccHHHccEEEEEcccccHHHHHHHHccccEEEEEcccccccccEEEEccHHHHHHHHHHHHccccEEEEEEccccccccccHHcHHHHHHHHHHHHHHHccEHccc
Coil and Loop (DISEMBL)
MRTIVSRLINSRSSVSRLSAITasgngrylstdsnkvdeplkveeaetvnvppppsekllvlggngfvgsHICREALDRGLTVASLSrsgrsslrdswANNVIWhqgnllssdsWKEALDGVTAVISCvggfgsnsymYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQgyyegkdsnlspllACYSLCCLM
Flexible Loop (DISEMBL)
MRTIVSRlinsrssvsrlsaitasgngrylstdsnkvdeplkveeaetvnvppppsEKLLVLGGNGFVGSHICREALDRGLTVASLSRsgrsslrdswANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCLM
Low Complexity Region (SEG)
MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAslsrsgrsslrdsWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCLM
Disordered region (IsUnstruct)
**********************************************************LLVLGGNGFVGSHICREALDRGLTVASL*******LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCL*
Disordered Region (DISOPRED)
*********************************************************KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCLM
Disordered Region (DISEMBL)
MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCLM
Disordered Region (DISPRO)
************SSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCLM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9FVR6	296	Uncharacterized protein A	no	no	0.69	0.466	0.457	3e-30
Q05892	277	Uncharacterized protein Y	yes	no	0.365	0.263	0.410	2e-10
O78472	314	Uncharacterized protein y	yes	no	0.53	0.337	0.327	6e-07
P51238	319	Uncharacterized protein y	N/A	no	0.525	0.329	0.339	7e-07
Q3ZBE9	356	Sterol-4-alpha-carboxylat	yes	no	0.54	0.303	0.305	1e-06
Q1XDP9	319	Uncharacterized protein y	N/A	no	0.525	0.329	0.339	1e-06
O53454	370	3 beta-hydroxysteroid deh	yes	no	0.52	0.281	0.322	2e-06
O74482	276	Uncharacterized protein C	yes	no	0.4	0.289	0.349	2e-06
Q5PPL3	362	Sterol-4-alpha-carboxylat	yes	no	0.525	0.290	0.307	3e-06
Q9R1J0	362	Sterol-4-alpha-carboxylat	yes	no	0.53	0.292	0.284	2e-05

>sp|Q9FVR6|Y1222_ARATH Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=1 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 93/140 (66%), Gaps = 2/140 (1%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           SE+++VLGGNGFVGS IC+ A+  G+ V S+SRSGR +  DSW + V W  G++   + W
Sbjct: 62  SERVVVLGGNGFVGSAICKAAISNGIEVVSVSRSGRPNFEDSWLDQVTWVTGDVFYLN-W 120

Query: 116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYL 175
            E L G TAV+S +GGFG+   M +ING AN+ A+ AA + GV +FV I+  D+ +  ++
Sbjct: 121 DEVLLGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITVHDYNLPPFI 180

Query: 176 L-QGYYEGKDSNLSPLLACY 194
           L  GY+ GK +  + LL+ Y
Sbjct: 181 LSNGYFTGKRNAEAELLSKY 200

Arabidopsis thaliana (taxid: 3702)

>sp|Q05892|YL290_YEAST Uncharacterized protein YLR290C, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR290C PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS----SLRD-SWANNVIWHQGNLLSS 112
           KL+V GGNGF+G  IC+EA+  G  V S+SRSG++     L D  W   V W   ++   
Sbjct: 4   KLIVFGGNGFLGKRICQEAVTSGYQVVSVSRSGKAPHSNELNDKQWMQEVQWTAADIFKP 63

Query: 113 DSWKEALDGVTAVISCVG 130
           DS+ E L+  T V+  +G
Sbjct: 64  DSYHELLNNATNVVHSLG 81

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O78472|YCF39_GUITH Uncharacterized protein ycf39 OS=Guillardia theta GN=ycf39 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-LRDSWANNVIWHQGNLLSSDSWKE 117
           LLV+G  G +G  I R ALD G  V+ L R+ R +     W   +++  G+L   ++   
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYEVSCLVRNLRKAYFLKEWGAELLY--GDLSLPETLPT 60

Query: 118 ALDGVTAVISCVGGFGSNSYM-YKINGTANINAIRAASEKGVKRFVYISA 166
            L  +TA+I       S+ Y   KI+    I  + AA   G+KRFV+ S 
Sbjct: 61  NLTKITAIIDASTARPSDPYKAEKIDLEGKIALVEAAKVAGIKRFVFFSV 110

Guillardia theta (taxid: 55529)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P51238|YCF39_PORPU Uncharacterized protein ycf39 OS=Porphyra purpurea GN=ycf39 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGR-SSLRDSWANNVIWHQGNLLSSDSWKE 117
           LLV+G  G +G  I R ALD G  V  + R+ R S+    W   +++  G+L   +S  +
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSAFLKEWGAELVY--GDLKLPESILQ 60

Query: 118 ALDGVTAVISCVGGFGSNSY-MYKINGTANINAIRAASEKGVKRFVYIS 165
           +  GVTAVI       S+ Y   +I+    I  I AA    V+RF++ S
Sbjct: 61  SFCGVTAVIDASTSRPSDPYNTEQIDLDGKIALIEAAKAAKVQRFIFFS 109

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 10/118 (8%)

Query: 54  PPSEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSS 112
           P +++  V+GG GF+G H+  + L RG  V     R G  + R      V +  G+L S 
Sbjct: 18  PKAKRCTVIGGCGFLGQHMVEQLLARGYAVNVFDIRQGFDNPR------VQFFLGDLCSQ 71

Query: 113 DSWKEALDGVTAVISCVG--GFGSNSYM-YKINGTANINAIRAASEKGVKRFVYISAA 167
                AL GV+ V  C     F +N  + Y++N     N I    E GV++ +  S+A
Sbjct: 72  QDLYPALKGVSTVFHCASPPPFNNNKELFYRVNYIGTKNVIETCKEAGVQKLILTSSA 129

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

>sp|Q1XDP9|YCF39_PORYE Uncharacterized protein ycf39 OS=Porphyra yezoensis GN=ycf39 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGR-SSLRDSWANNVIWHQGNLLSSDSWKE 117
           LLV+G  G +G  I R ALD G  V  + R+ R S+    W   +I+  G+L   +S  +
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSAFLKEWGAELIY--GDLKLPESILQ 60

Query: 118 ALDGVTAVISCVGGFGSNSY-MYKINGTANINAIRAASEKGVKRFVYIS 165
           +  GVTA+I        + Y   KI+    I  I AA    V+RF++ S
Sbjct: 61  SFCGVTAIIDASTSRLPDPYNAEKIDLDGKIALIEAAKAAKVERFIFFS 109

Porphyra yezoensis (taxid: 2788)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O53454|3BHS_MYCTU 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Mycobacterium tuberculosis GN=Rv1106c PE=1 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 17/121 (14%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++LV GG GFVG+++    LDRG  V S  R+   SL  +     +  QG++  +D    
Sbjct: 16  RVLVTGGAGFVGANLVTTLLDRGHWVRSFDRA--PSLLPAHPQLEVL-QGDITDADVCAA 72

Query: 118 ALDGV------TAVISCVGG------FGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
           A+DG+       A+I  +GG      +   S+   + GT N+  + A    GV+RFVY S
Sbjct: 73  AVDGIDTIFHTAAIIELMGGASVTDEYRQRSFAVNVGGTENL--LHAGQRAGVQRFVYTS 130

Query: 166 A 166
           +
Sbjct: 131 S 131

3-beta-HSD is a bifunctional enzyme, that catalyzes the oxidation and isomerization of cholesterol, pregnenolone, and dehydroepiandrosterone (DHEA) into cholest-4-en-3-one, progesterone, and androsterone, respectively.

Mycobacterium tuberculosis (taxid: 1773)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

>sp|O74482|YQJ9_SCHPO Uncharacterized protein C1840.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1840.09 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLS-SDS 114
           K++VLGG+GF+G +IC+ A+ +G  V S+SR G   L  ++ W ++V W   +     +S
Sbjct: 2   KIVVLGGSGFLGHNICKLAIAKGYEVVSVSRRGAGGLHNKEPWMDDVEWETLDAQKDPNS 61

Query: 115 WKEALDGVTAVISCVGGFGSNSY 137
               L   +AV++ VG    N+Y
Sbjct: 62  LLPVLRDASAVVNSVGILMENNY 84

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5PPL3|NSDHL_RAT Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Nsdhl PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++K  V+GG+GF+G H+  + L RG  V     R G  + R      V +  G+L +   
Sbjct: 26  AKKCTVIGGSGFLGQHMVEQLLSRGYAVNVFDVRQGFDNPR------VQFFIGDLCNQQD 79

Query: 115 WKEALDGVTAVISCVGGFGSNS----YMYKINGTANINAIRAASEKGVKRFVYISAA 167
              AL GV+ V  C     SNS      Y++N T     I    E GV++ +  S+A
Sbjct: 80  LYPALKGVSTVFHCASP-PSNSNNKELFYRVNSTGTKTVIETCKEAGVQKLILTSSA 135

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

>sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++K  V+GG+GF+G H+  + L+RG TV       G  + R      V +  G+L +   
Sbjct: 26  AKKCTVIGGSGFLGQHMVEQLLERGYTVNVFDIHQGFDNPR------VQFFIGDLCNQQD 79

Query: 115 WKEALDGVTAVISCVG--GFGSNSYM-YKINGTANINAIRAASEKGVKRFVYISAA 167
              AL GV+ V  C     + +N  + Y++N       I    E GV++ +  S+A
Sbjct: 80  LYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLILTSSA 135

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
224089442	288	predicted protein [Populus trichocarpa]	0.975	0.677	0.789	1e-87
224142023	287	predicted protein [Populus trichocarpa]	0.975	0.679	0.794	7e-86
449441836	287	PREDICTED: uncharacterized protein At1g3	0.97	0.675	0.793	4e-85
225430578	287	PREDICTED: uncharacterized protein At1g3	0.97	0.675	0.804	1e-80
217073926	199	unknown [Medicago truncatula]	0.96	0.964	0.769	3e-80
297811177	287	catalytic/ coenzyme binding protein [Ara	0.975	0.679	0.784	6e-80
255548648	281	conserved hypothetical protein [Ricinus	0.88	0.626	0.829	7e-80
388507480	282	unknown [Lotus japonicus]	0.95	0.673	0.757	2e-79
18416362	287	Rossmann-fold NAD(P)-binding domain-cont	0.975	0.679	0.784	6e-77
356507149	287	PREDICTED: uncharacterized protein At1g3	0.97	0.675	0.788	8e-76

>gi|224089442|ref|XP_002308721.1| predicted protein [Populus trichocarpa] gi|222854697|gb|EEE92244.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 176/195 (90%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           M ++ SRLI+SR+S+S+L  +  S NGRYLSTDSNKVDEP KVEEAET+NVPPPP+EKLL
Sbjct: 1   MTSLTSRLIHSRTSLSKLYTMAVSSNGRYLSTDSNKVDEPFKVEEAETLNVPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHIC+EA+DRGLTVASLSRSGR S+++SW NNVIWHQGNLLSSDSW +AL+
Sbjct: 61  VLGGNGFVGSHICKEAVDRGLTVASLSRSGRPSIQESWVNNVIWHQGNLLSSDSWMQALN 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGS SYMYKINGTANINAIRAASEKGVKRFVYISAADFG+ NYLLQGYY
Sbjct: 121 GVTSVISCVGGFGSQSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLVNYLLQGYY 180

Query: 181 EGKDSNLSPLLACYS 195
           EGK +  + LL  ++
Sbjct: 181 EGKKAAETELLTKFA 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142023|ref|XP_002324359.1| predicted protein [Populus trichocarpa] gi|222865793|gb|EEF02924.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 155/195 (79%), Positives = 173/195 (88%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           M  + SRLI SR+S+S+L  I AS NGRYLSTDSNKVDEP KVEEAETVNVPPP +EKLL
Sbjct: 1   MTPLTSRLIQSRTSLSKLFTIAASRNGRYLSTDSNKVDEPFKVEEAETVNVPPPSTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHIC+EA+DRGLTVASLSRSGR S+ D+W NNVIWHQG+LLSS SW EAL+
Sbjct: 61  VLGGNGFVGSHICKEAVDRGLTVASLSRSGRPSIHDAWVNNVIWHQGSLLSSYSWTEALN 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGS SYMYKINGTANINAIRAASEKGVKRFVYIS+ADFG+ANYLLQGYY
Sbjct: 121 GVTSVISCVGGFGSQSYMYKINGTANINAIRAASEKGVKRFVYISSADFGLANYLLQGYY 180

Query: 181 EGKDSNLSPLLACYS 195
           EGK +  + LL  ++
Sbjct: 181 EGKKAAETELLTKFA 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441836|ref|XP_004138688.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic-like [Cucumis sativus] gi|449493285|ref|XP_004159244.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic-like [Cucumis sativus]

 Score =  319 bits (817), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 154/194 (79%), Positives = 170/194 (87%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           M + +SRLI+SRSS  +L  + AS  GR  STDSNK+DEP KVEEAETVNVPPPP+EKLL
Sbjct: 1   MSSTLSRLIHSRSSFPKLYTMAASRGGRPFSTDSNKIDEPFKVEEAETVNVPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHIC+EAL+RGLTVASLSRSGRSS+RDSWANNVIWHQGNLLS DS  EA D
Sbjct: 61  VLGGNGFVGSHICQEALNRGLTVASLSRSGRSSIRDSWANNVIWHQGNLLSPDSLSEAFD 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVTAVISC+GGFGSNS MYKINGTANINAIR AS+KGVKRFVYISAADFG+ANYLLQGYY
Sbjct: 121 GVTAVISCIGGFGSNSQMYKINGTANINAIRVASDKGVKRFVYISAADFGLANYLLQGYY 180

Query: 181 EGKDSNLSPLLACY 194
           EGK +  + LL  +
Sbjct: 181 EGKRAAETELLTKF 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430578|ref|XP_002263819.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic [Vitis vinifera] gi|296082186|emb|CBI21191.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/194 (80%), Positives = 176/194 (90%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           M+TI+S+LI+SRSS+SR  A+ A  NGR LSTDSNKVDEPLKVEEAETV++PPPP+EKLL
Sbjct: 1   MKTIISQLIHSRSSLSRFYAMAAFRNGRCLSTDSNKVDEPLKVEEAETVDIPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHIC+EAL RG+ VASLSRSGRSS+ D WANN+ WH+GNLLSSDSWKEAL 
Sbjct: 61  VLGGNGFVGSHICKEALSRGIAVASLSRSGRSSINDPWANNIEWHRGNLLSSDSWKEALS 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGS+SYMYKINGTANINAIRAA+EKGVKRFVYISAADFGVANYLLQGYY
Sbjct: 121 GVTSVISCVGGFGSSSYMYKINGTANINAIRAAAEKGVKRFVYISAADFGVANYLLQGYY 180

Query: 181 EGKDSNLSPLLACY 194
           EGK +  + LL  +
Sbjct: 181 EGKRAAETELLTKF 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073926|gb|ACJ85323.1| unknown [Medicago truncatula]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 150/195 (76%), Positives = 172/195 (88%), Gaps = 3/195 (1%)

Query: 1   MRTIVSRLINSRS-SVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKL 59
           M+TI+SRLI+S S S+SRL+A+  S NGR   TDSNK+DEP KVEEAETV  PPPP+EKL
Sbjct: 1   MKTIISRLIHSSSFSISRLNAMAVSINGRSFCTDSNKIDEPFKVEEAETV--PPPPTEKL 58

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LVLGGNGFVGSH+CREAL+ GL+VASLSRSG+SSL DSWA NVIW++GNLLS++S KEAL
Sbjct: 59  LVLGGNGFVGSHVCREALNHGLSVASLSRSGKSSLHDSWATNVIWYKGNLLSTESLKEAL 118

Query: 120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGY 179
           +GVTAVISCVGGFGSNS MYKINGTANINAIRAASE+GVKRF+YISAADFGV NYLLQGY
Sbjct: 119 NGVTAVISCVGGFGSNSSMYKINGTANINAIRAASEQGVKRFIYISAADFGVVNYLLQGY 178

Query: 180 YEGKDSNLSPLLACY 194
           YEGK +  + LL  +
Sbjct: 179 YEGKRATETELLTKF 193

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811177|ref|XP_002873472.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp. lyrata] gi|297319309|gb|EFH49731.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 153/195 (78%), Positives = 177/195 (90%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           MRTIVSRLI  +SS+S++   +ASG GRYLSTDSNK+DEP  VEEAETV+VPPPP+EKLL
Sbjct: 1   MRTIVSRLIRYKSSLSQIRFASASGGGRYLSTDSNKIDEPFNVEEAETVHVPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSH+C+EALDRGL+V+SLSRSG+SSL++SWA+ V WHQGNLLSSD  K+ALD
Sbjct: 61  VLGGNGFVGSHVCKEALDRGLSVSSLSRSGKSSLQESWASRVTWHQGNLLSSDLLKDALD 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG+ANYLL+GYY
Sbjct: 121 GVTSVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLANYLLRGYY 180

Query: 181 EGKDSNLSPLLACYS 195
           EGK +  + LL  ++
Sbjct: 181 EGKRAAETELLTRFA 195

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548648|ref|XP_002515380.1| conserved hypothetical protein [Ricinus communis] gi|223545324|gb|EEF46829.1| conserved hypothetical protein [Ricinus communis]

 Score =  301 bits (772), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 146/176 (82%), Positives = 161/176 (91%)

Query: 19  SAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALD 78
           SA+ AS NGRYLSTDSNKVDEP KVEEAETVNVPPP +EKLLVLGGNGFVGSH+C+EALD
Sbjct: 13  SAVAASRNGRYLSTDSNKVDEPFKVEEAETVNVPPPAAEKLLVLGGNGFVGSHVCKEALD 72

Query: 79  RGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYM 138
           RGL V SLSRSGRSS+RDSWAN V WHQG+LLS +SWKEAL+GV+AVISCVGGFGS+S+M
Sbjct: 73  RGLKVDSLSRSGRSSVRDSWANAVTWHQGDLLSPNSWKEALNGVSAVISCVGGFGSHSHM 132

Query: 139 YKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACY 194
           YKINGTANINAIRAASEKGVKRFVYISAADFG+ANYLLQGYYEGK +  + LL  +
Sbjct: 133 YKINGTANINAIRAASEKGVKRFVYISAADFGLANYLLQGYYEGKRAAETELLTKF 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507480|gb|AFK41806.1| unknown [Lotus japonicus]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/194 (75%), Positives = 168/194 (86%), Gaps = 4/194 (2%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           MRT+VSRLI+S   +SRL+A       R L T+ NKVDEP KVEEAETVNVPPPP+EKLL
Sbjct: 1   MRTLVSRLIHSTPPISRLNATAV----RNLCTEPNKVDEPFKVEEAETVNVPPPPTEKLL 56

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSH+CREAL+ GL+VASLSRSG+SSL DSWA +VIW++GNL S+DS KEAL+
Sbjct: 57  VLGGNGFVGSHVCREALNHGLSVASLSRSGKSSLHDSWATDVIWYKGNLFSTDSLKEALN 116

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVTAVISCVGGFGSNSYMYKI+GTANINAIRAAS++GVKRFVYISAADFGV NYLLQGYY
Sbjct: 117 GVTAVISCVGGFGSNSYMYKIDGTANINAIRAASDQGVKRFVYISAADFGVVNYLLQGYY 176

Query: 181 EGKDSNLSPLLACY 194
           EGK +  + LL  +
Sbjct: 177 EGKRAAETELLTRF 190

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416362|ref|NP_568236.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|13926273|gb|AAK49607.1|AF372891_1 AT5g10730/MAJ23_90 [Arabidopsis thaliana] gi|16323238|gb|AAL15353.1| AT5g10730/MAJ23_90 [Arabidopsis thaliana] gi|19698949|gb|AAL91210.1| putative protein [Arabidopsis thaliana] gi|21387195|gb|AAM48001.1| unknown protein [Arabidopsis thaliana] gi|21536539|gb|AAM60871.1| unknown [Arabidopsis thaliana] gi|332004206|gb|AED91589.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 153/195 (78%), Positives = 178/195 (91%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           MRTIVSRLI  +SS+S++  ++ASG GRYLSTDSNK+DEP  VEEAETV+VPPPP+EKLL
Sbjct: 1   MRTIVSRLIRYQSSLSQIRFVSASGGGRYLSTDSNKIDEPFNVEEAETVHVPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSH+C+EALDRGL+V+SLSRSGRSSL++SWA+ V WHQGNLLSSD  K+AL+
Sbjct: 61  VLGGNGFVGSHVCKEALDRGLSVSSLSRSGRSSLQESWASRVTWHQGNLLSSDLLKDALE 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG+ANYLL+GYY
Sbjct: 121 GVTSVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLANYLLRGYY 180

Query: 181 EGKDSNLSPLLACYS 195
           EGK +  + LL  ++
Sbjct: 181 EGKRAAETELLTRFA 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507149|ref|XP_003522333.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic-like [Glycine max]

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 172/194 (88%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           MRT++SRLI+S  S+SRL+A   S +GR L TDSNKVD P KVEEAETVNVPP P+EKLL
Sbjct: 1   MRTVISRLIHSTPSISRLNATVVSISGRNLCTDSNKVDGPFKVEEAETVNVPPLPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHICREALDR L+VASLSRSGRSSL DSWA NV W++GNLLS+DS KEAL+
Sbjct: 61  VLGGNGFVGSHICREALDRDLSVASLSRSGRSSLHDSWATNVAWYKGNLLSTDSLKEALN 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVTAVISCVGGFGSNSYMYKINGTANINAIRAAS++GVKRFVYISAADFGV NYLL+GYY
Sbjct: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASDQGVKRFVYISAADFGVVNYLLRGYY 180

Query: 181 EGKDSNLSPLLACY 194
           EGK ++ + LL  +
Sbjct: 181 EGKRASETELLTRF 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2159674	287	AT5G10730 [Arabidopsis thalian	0.975	0.679	0.728	2.8e-73
TAIR|locus:2146092	269	AT5G15910 [Arabidopsis thalian	0.875	0.650	0.497	1.2e-42
TAIR|locus:2031710	296	AT1G32220 [Arabidopsis thalian	0.69	0.466	0.4	2.6e-24
UNIPROTKB|K7GMD9	215	NSDHL "Uncharacterized protein	0.62	0.576	0.270	2.7e-06
UNIPROTKB|F1S2D0	361	NSDHL "Uncharacterized protein	0.62	0.343	0.270	1.1e-05
UNIPROTKB|F6XJP3	361	NSDHL "Uncharacterized protein	0.62	0.343	0.270	2e-05
ASPGD|ASPL0000045253	287	AN1860 [Emericella nidulans (t	0.375	0.261	0.325	4.2e-05
UNIPROTKB|E2QVH4	373	NSDHL "Uncharacterized protein	0.62	0.332	0.272	7e-05
SGD|S000004281	277	YLR290C "Putative protein of u	0.365	0.263	0.320	0.00013
UNIPROTKB|Q3ZBE9	356	NSDHL "Sterol-4-alpha-carboxyl	0.545	0.306	0.282	0.00016

TAIR|locus:2159674 AT5G10730 [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 142/195 (72%), Positives = 165/195 (84%)

Query:     1 MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
             MRTIVSRLI  +SS+S++  ++ASG GRYLSTDSNK+DEP  VEEAETV+VPPPP+EKLL
Sbjct:     1 MRTIVSRLIRYQSSLSQIRFVSASGGGRYLSTDSNKIDEPFNVEEAETVHVPPPPTEKLL 60

Query:    61 VLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDSWKEALD 120
             VLGGNGFVGSH+C+EALDRGL+V+             WA+ V WHQGNLLSSD  K+AL+
Sbjct:    61 VLGGNGFVGSHVCKEALDRGLSVSSLSRSGRSSLQESWASRVTWHQGNLLSSDLLKDALE 120

Query:   121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
             GVT+VISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG+ANYLL+GYY
Sbjct:   121 GVTSVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLANYLLRGYY 180

Query:   181 EGKDSNLSPLLACYS 195
             EGK +  + LL  ++
Sbjct:   181 EGKRAAETELLTRFA 195

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2146092 AT5G15910 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 95/191 (49%), Positives = 130/191 (68%)

Query:     1 MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
             +R+++ +   + SSV  +S+I+  GN R LS          +V  + +         K+L
Sbjct:     2 LRSLIWKRSQAYSSVVTMSSISQRGNERLLS----------EVAGSHS------RDNKIL 45

Query:    61 VLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDSWKEALD 120
             VLGGNG+VGSHIC+EAL +G +V+             W ++V WHQG+LLS DS K AL+
Sbjct:    46 VLGGNGYVGSHICKEALRQGFSVSSLSRSGRSSLHDSWVDDVTWHQGDLLSPDSLKPALE 105

Query:   121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
             G+T+VISCVGGFGSNS M +INGTANINA++AA+E+GVKRFVYISAADFGV N L++GY+
Sbjct:   106 GITSVISCVGGFGSNSQMVRINGTANINAVKAAAEQGVKRFVYISAADFGVINNLIRGYF 165

Query:   181 EGKDSNLSPLL 191
             EGK +  + +L
Sbjct:   166 EGKRATEAEIL 176

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2031710 AT1G32220 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 56/140 (40%), Positives = 83/140 (59%)

Query:    56 SEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDSW 115
             SE+++VLGGNGFVGS IC+ A+  G+ V              W + V W  G++   + W
Sbjct:    62 SERVVVLGGNGFVGSAICKAAISNGIEVVSVSRSGRPNFEDSWLDQVTWVTGDVFYLN-W 120

Query:   116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYL 175
              E L G TAV+S +GGFG+   M +ING AN+ A+ AA + GV +FV I+  D+ +  ++
Sbjct:   121 DEVLLGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITVHDYNLPPFI 180

Query:   176 LQ-GYYEGKDSNLSPLLACY 194
             L  GY+ GK +  + LL+ Y
Sbjct:   181 LSNGYFTGKRNAEAELLSKY 200

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042631 "cellular response to water deprivation" evidence=RCA

UNIPROTKB|K7GMD9 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 36/133 (27%), Positives = 58/133 (43%)

Query:    39 EPLKVEEAET-VNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX 97
             EP+K +  +T +    P   K  V+GG+GF+G H+  + L+RG  V              
Sbjct:     7 EPIKDQVTQTHLTEDIPKDRKCTVIGGSGFLGQHMVEQLLERGYAVNVFDKRQGFDNP-- 64

Query:    98 WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS---YMYKINGTANINAIRAAS 154
                 V +  G+L +      AL GV+ V  C     S++     Y++N     N I    
Sbjct:    65 ---RVQFFLGDLCNQQDLYPALKGVSTVFHCASPAPSSNNKELFYRVNYIGTKNVIETCR 121

Query:   155 EKGVKRFVYISAA 167
             E GV++ +  S+A
Sbjct:   122 EAGVQKLILTSSA 134

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1S2D0 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 36/133 (27%), Positives = 58/133 (43%)

Query:    39 EPLKVEEAET-VNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX 97
             EP+K +  +T +    P   K  V+GG+GF+G H+  + L+RG  V              
Sbjct:     7 EPIKDQVTQTHLTEDIPKDRKCTVIGGSGFLGQHMVEQLLERGYAVNVFDKRQGFDNP-- 64

Query:    98 WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS---YMYKINGTANINAIRAAS 154
                 V +  G+L +      AL GV+ V  C     S++     Y++N     N I    
Sbjct:    65 ---RVQFFLGDLCNQQDLYPALKGVSTVFHCASPAPSSNNKELFYRVNYIGTKNVIETCR 121

Query:   155 EKGVKRFVYISAA 167
             E GV++ +  S+A
Sbjct:   122 EAGVQKLILTSSA 134

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F6XJP3 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 36/133 (27%), Positives = 56/133 (42%)

Query:    39 EPLKVEEAET-VNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX 97
             EP++ +   T +    P + K  V+GG+GF+G H+  + L RG TV              
Sbjct:     7 EPMRDQVTRTHLTEGLPNASKCTVIGGSGFLGQHMVEQLLARGYTVNVFDMRQGFDNP-- 64

Query:    98 WANNVIWHQGNLLSSDSWKEALDGVTAVISCVG---GFGSNSYMYKINGTANINAIRAAS 154
                 V +  G+L S      AL GV+ V  C        +    Y++N     N I    
Sbjct:    65 ---RVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCK 121

Query:   155 EKGVKRFVYISAA 167
             E GV++ +  S+A
Sbjct:   122 EAGVQKLILTSSA 134

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000045253 AN1860 [Emericella nidulans (taxid:162425)]

 Score = 116 (45.9 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 27/83 (32%), Positives = 42/83 (50%)

Query:    56 SEKLLVLGGNGFVGSHICREALDRGLTVAXXXXX--------XXXXXXXXWANNVIWHQG 107
             S+KL+V GGNGF+GS IC+ A+ RG +V                      WA +V W + 
Sbjct:     3 SKKLVVAGGNGFLGSRICKSAVARGWSVTSISRSGEPRWDVVTSSPQRPGWAKSVEWAKA 62

Query:   108 NLLSSDSWKEALDGVTAVISCVG 130
             ++L  +++K  L    AV+  +G
Sbjct:    63 DILKPNTYKPFLKDANAVVHSMG 85

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2QVH4 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 36/132 (27%), Positives = 53/132 (40%)

Query:    39 EPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXW 98
             E L     +T  V    + K  V+GG+GF+G H+  + L RG TV               
Sbjct:    20 EGLPNVSTDTKKVNQNQASKCTVIGGSGFLGQHMVEQLLARGYTVNVFDMRQGFDNP--- 76

Query:    99 ANNVIWHQGNLLSSDSWKEALDGVTAVISCVG---GFGSNSYMYKINGTANINAIRAASE 155
                V +  G+L S      AL GV+ V  C        +    Y++N     N I    E
Sbjct:    77 --RVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKE 134

Query:   156 KGVKRFVYISAA 167
              GV++ +  S+A
Sbjct:   135 AGVQKLILTSSA 146

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000004281 YLR290C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 112 (44.5 bits), Expect = 0.00013, P = 0.00013
 Identities = 25/78 (32%), Positives = 35/78 (44%)

Query:    58 KLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX-----WANNVIWHQGNLLSS 112
             KL+V GGNGF+G  IC+EA+  G  V                   W   V W   ++   
Sbjct:     4 KLIVFGGNGFLGKRICQEAVTSGYQVVSVSRSGKAPHSNELNDKQWMQEVQWTAADIFKP 63

Query:   113 DSWKEALDGVTAVISCVG 130
             DS+ E L+  T V+  +G
Sbjct:    64 DSYHELLNNATNVVHSLG 81

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q3ZBE9 NSDHL "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
 Identities = 33/117 (28%), Positives = 51/117 (43%)

Query:    54 PPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSD 113
             P +++  V+GG GF+G H+  + L RG  V                  V +  G+L S  
Sbjct:    18 PKAKRCTVIGGCGFLGQHMVEQLLARGYAVNVFDIRQGFDNP-----RVQFFLGDLCSQQ 72

Query:   114 SWKEALDGVTAVISCVGG--FGSNSYM-YKINGTANINAIRAASEKGVKRFVYISAA 167
                 AL GV+ V  C     F +N  + Y++N     N I    E GV++ +  S+A
Sbjct:    73 DLYPALKGVSTVFHCASPPPFNNNKELFYRVNYIGTKNVIETCKEAGVQKLILTSSA 129

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0047012 "sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	1e-22
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	7e-18
cd05244	207	cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu	1e-17
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	1e-17
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	6e-17
cd05271	273	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub	6e-17
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	7e-17
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	2e-15
cd05259	282	cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe	8e-15
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	1e-14
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	6e-14
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	4e-13
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	5e-13
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	2e-11
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	2e-11
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	1e-10
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	2e-10
cd08946	200	cd08946, SDR_e, extended (e) SDRs	2e-10
pfam05368	232	pfam05368, NmrA, NmrA-like family	6e-10
CHL00194	317	CHL00194, ycf39, Ycf39; Provisional	9e-10
cd05250	214	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical	1e-09
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	1e-09
cd05269	272	cd05269, TMR_SDR_a, triphenylmethane reductase (TM	1e-09
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	1e-09
PLN02657	390	PLN02657, PLN02657, 3,8-divinyl protochlorophyllid	2e-09
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	5e-09
COG2910	211	COG2910, COG2910, Putative NADH-flavin reductase [	1e-08
cd05273	328	cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-	1e-08
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	2e-08
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	4e-08
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	4e-08
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	5e-08
cd05251	242	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional	6e-08
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	1e-07
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	1e-07
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	7e-07
cd05229	302	cd05229, SDR_a3, atypical (a) SDRs, subgroup 3	2e-06
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	7e-06
cd05265	250	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	2e-05
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	2e-05
cd05254	280	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4	2e-05
cd05242	296	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8	4e-05
PLN02695	370	PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase	5e-05
COG1091	281	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C	2e-04
PRK09009	235	PRK09009, PRK09009, C factor cell-cell signaling p	2e-04
TIGR03649	285	TIGR03649, ergot_EASG, ergot alkaloid biosynthesis	2e-04
cd05231	259	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript	3e-04
cd05267	203	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	6e-04
TIGR01777	291	TIGR01777, yfcH, TIGR01777 family protein	9e-04
cd05246	315	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra	0.001
cd05239	300	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte	0.001
COG1748	389	COG1748, LYS9, Saccharopine dehydrogenase and rela	0.002
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	0.002
TIGR04180	297	TIGR04180, EDH_00030, NAD dependent epimerase/dehy	0.002
PLN02240	352	PLN02240, PLN02240, UDP-glucose 4-epimerase	0.002
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	0.002
PLN00141	251	PLN00141, PLN00141, Tic62-NAD(P)-related group II	0.004
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	0.004

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score = 90.0 bits (224), Expect = 1e-22
 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSSLRDSWANNVIWHQGNLLSSDSWK 116
           K+LV+G  G VG H+ RE LDRG  V +L R   ++   ++    V+   G+L  ++S  
Sbjct: 1   KVLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAEKLEAAGAEVV--VGDLTDAESLA 58

Query: 117 EALDGVTAVISCVGGFGSNSYMY-KINGTANINAIRAASEKGVKRFVYISA 166
            AL+G+ AVIS  G  G        ++   NIN I AA + GVKRFV +S+
Sbjct: 59  AALEGIDAVISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVKRFVLVSS 109

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 78.8 bits (194), Expect = 7e-18
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+LV G  GFVG  + RE L RG  V +  R+  ++   + A  V    G+L    S   
Sbjct: 2   KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAA--AALAGGVEVVLGDLRDPKSLVA 59

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
              GV  V+   G    +     +  TA + A  AA   GVK  V +S   
Sbjct: 60  GAKGVDGVLLISGLLDGSDAFRAVQVTAVVRAAEAAGA-GVKHGVSLSVLG 109

Length = 275

>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs

 Score = 76.9 bits (190), Expect = 1e-17
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ ++G  G  GS I REAL RG  V +L R       +     V+  QG++L  +  KE
Sbjct: 1   KIAIIGATGRTGSAIVREALARGHEVTALVRDPAKLPAEHEKLKVV--QGDVLDLEDVKE 58

Query: 118 ALDGVTAVISCVGGFGSNS--YMYKINGTANINAIRAASEKGVKRFVYISAA 167
           AL+G  AVIS +G     S   ++   GT NI  + A    GVKR + +  A
Sbjct: 59  ALEGQDAVISALGTRNDLSPTTLH-SEGTRNI--VSAMKAAGVKRLIVVGGA 107

Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G  GF+GS++ R  L +G  V +L RSG S         V   +G+L  + S   A+
Sbjct: 2   LVTGATGFLGSNLVRALLAQGYRVRALVRSG-SDAVLLDGLPVEVVEGDLTDAASLAAAM 60

Query: 120 DGVTAVISCVGGF----GSNSYMYKIN--GTANINAIRAASEKGVKRFVYIS 165
            G   V                +Y+ N  GT N+  + AA E GV+R V+ S
Sbjct: 61  KGCDRVFHLAAFTSLWAKDRKELYRTNVEGTRNV--LDAALEAGVRRVVHTS 110

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 75.4 bits (186), Expect = 6e-17
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV GG GF+GSH+ R  L  G  V  L R  RS   ++      +H+G+L   D+ +  L
Sbjct: 2   LVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNTGRIR--FHEGDLTDPDALERLL 59

Query: 120 DGV--TAVISCVGG------FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
             V   AVI           F   +   + N    +  + AA   GVKRFV+ S++
Sbjct: 60  AEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVFASSS 115

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs

 Score = 76.1 bits (188), Expect = 6e-17
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANN---VIWHQGNLLSSDS 114
            + V G  GF+G ++      RG  V    R    + R     +   V++ + +L   +S
Sbjct: 2   VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLLVMGDLGQVLFVEFDLRDDES 61

Query: 115 WKEALDGVTAVISCVG---GFGSNSYMY-KINGTANINAIRAASEKGVKRFVYISAA 167
            ++AL+G   VI+ VG      + S+    + G   +   +AA E GV+R ++ISA 
Sbjct: 62  IRKALEGSDVVINLVGRLYETKNFSFEDVHVEGPERL--AKAAKEAGVERLIHISAL 116

This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 74.3 bits (183), Expect = 7e-17
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA 118
           + V+G  G  G  + +E L RG  V +LSR+  S         V   Q +L       EA
Sbjct: 1   IAVIGATGKTGRRLVKELLARGHQVTALSRNP-SKAPAPGVTPV---QKDLFDLADLAEA 56

Query: 119 LDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           L GV AV+   G    +S           + + AA+  GV+R V +SAA
Sbjct: 57  LAGVDAVVDAFGARPDDS-------DGVKHLLDAAARAGVRRIVVVSAA 98

Length = 182

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 72.7 bits (178), Expect = 2e-15
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++LV GG GF+GSH+    L  G  V  L R           + V +   +L   D   E
Sbjct: 2   RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL--LSGVEFVVLDLTDRDLVDE 59

Query: 118 ALDGVTAVI----SCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISAA 167
              GV   +    +      SN    +    +N    +N + AA   GVKRFV+ S+ 
Sbjct: 60  LAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSV 117

Length = 314

>gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           K+ + G  G +G  I    L   G TV  L+R   +S  +   + V     +  S +S  
Sbjct: 1   KIAIAGATGTLGGPIVSALLASPGFTVTVLTRPSSTSSNEFQPSGVKVVPVDYASHESLV 60

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV 171
            AL GV AVIS +GG               +  I AA   GVKRF+    ++FGV
Sbjct: 61  AALKGVDAVISALGGAAIGD---------QLKLIDAAIAAGVKRFI---PSEFGV 103

PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 282

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 33/106 (31%), Positives = 47/106 (44%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G  G+VG  +    L  G  V +L RS        W+  V   +G+L   +S + AL
Sbjct: 2   LVTGATGYVGGRLVPRLLQEGHQVRALVRSPEKLADRPWSERVTVVRGDLEDPESLRAAL 61

Query: 120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
           +G+      V   GS     + +  A  N  RAA   GVKR +Y+ 
Sbjct: 62  EGIDTAYYLVHSMGSGGDFEEADRRAARNFARAARAAGVKRIIYLG 107

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 60  LVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWAN-NVI-WHQGNLLSSDSW 115
           LV GG GF+G HI R  L  G    V          L + ++   VI + +G++      
Sbjct: 1   LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITYIEGDVTDKQDL 60

Query: 116 KEALDGV-----TAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           + AL G      TA I  V G      + K+N     N + A  + GV+  VY S+ +
Sbjct: 61  RRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSME 118

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score = 66.1 bits (162), Expect = 4e-13
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 22/128 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDRG----LTVASLSRSG--RSSLRDSWANN----VIWHQG 107
            +LV G  GF+ SHI  + L  G     TV SLS+S   ++ L+ +  N+    VI    
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVI--VD 58

Query: 108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYK-------INGTANI-NAIRAASEKGVK 159
           +L + ++W EAL GV  VI     F       +       + GT N+  A +AA    VK
Sbjct: 59  DLTAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAA--GSVK 116

Query: 160 RFVYISAA 167
           R V  S+ 
Sbjct: 117 RVVLTSSV 124

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+LV G  GFVGS + R  L++G  V  L R   S  R+    +V   +G+L    S ++
Sbjct: 2   KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT-SDRRNLEGLDVEIVEGDLRDPASLRK 60

Query: 118 ALDGVTAVISCVGGF----GSNSYMYKIN--GTANINAIRAASEKGVKRFVYIS 165
           A+ G  A+      +         MY  N  GT N+  +RAA E GV+R VY S
Sbjct: 61  AVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNL--LRAALEAGVERVVYTS 112

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 60  LVLGGNGFVGSHICREALDRGLT-VASLSRS-GRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           LV GG+GF G  + ++ L+RG T V S   +    +L      N+ + +G++   +  ++
Sbjct: 3   LVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEALSAWQHPNIEFLKGDITDRNDVEQ 62

Query: 118 ALDGVTAVISC---VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           AL G   V      V   G     +++N     N + A    GV++FVY S++
Sbjct: 63  ALSGADCVFHTAAIVPLAGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTSSS 115

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           L+LG  GF+G  + RE L++G  V  L R+ +   ++      +  +G+L   DS  +A+
Sbjct: 2   LILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKEDQEPVAV-VEGDLRDLDSLSDAV 60

Query: 120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            GV  VI   G         +++     N + AA E GVK F++IS+ 
Sbjct: 61  QGVDVVIHLAGAPRDTRDFCEVDVEGTRNVLEAAKEAGVKHFIFISSL 108

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 17/117 (14%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+LV G NGF+G  +  + L RG  V    R+      ++   +V+  +  L   DS+ +
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRN-----AENAEPSVVLAE--LPDIDSFTD 53

Query: 118 ALDGVTAVISCVGGFGSNS---------YMYKINGTANINAIRAASEKGVKRFVYIS 165
              GV AV+         +         Y  K+N        RAA+ +GVKRFV++S
Sbjct: 54  LFLGVDAVVHLAARVHVMNDQGADPLSDYR-KVNTELTRRLARAAARQGVKRFVFLS 109

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++LV GG GF+GSH+    L+RG  V    +LS +G+         NV + +G++   + 
Sbjct: 1   RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLS-TGKKENLPEVKPNVKFIEGDIRDDEL 59

Query: 115 WKEALDGVTAVISCVGGFGSNS-------YMYKINGTANINAIRAASEKGVKRFVYISAA 167
            + A +GV  V        S           +++N    +N + AA + GVKRFVY S++
Sbjct: 60  VEFAFEGVDYVFH-QAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRFVYASSS 118

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 29/107 (27%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEA 118
           LV GG GF+GSH+ R  L+RG  V  + R            +V+ H   L+    SW   
Sbjct: 2   LVTGGAGFIGSHLVRRLLERGHEVVVIDRL-----------DVVVHLAALVGVPASWDNP 50

Query: 119 LDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
            +                  ++ N    +N + AA + GVKRFVY S
Sbjct: 51  DE-----------------DFETNVVGTLNLLEAARKAGVKRFVYAS 80

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANN-VIWHQGNLLSSDSWKE 117
           +LV G  G+ G  + R +L  G  V +L R  +S L  S     V   +G+L   +S  E
Sbjct: 1   ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVE 60

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQ 177
           AL GV  V S  G + S                 AA E GVK F+    ++FG       
Sbjct: 61  ALKGVDVVFSVTGFWLSKEIEDG------KKLADAAKEAGVKHFIP---SEFGNDVDRSN 111

Query: 178 GYYEGK 183
           G     
Sbjct: 112 GVEPAV 117

NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232

>gnl|CDD|177093 CHL00194, ycf39, Ycf39; Provisional

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSWK 116
           LLV+G  G +G  I R+ALD G  V  L R+ R +  L++ W   +++  G+L   ++  
Sbjct: 3   LLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-WGAELVY--GDLSLPETLP 59

Query: 117 EALDGVTAVISCVGGFGSNSY-MYKINGTANINAIRAASEKGVKRFVYISA 166
            +  GVTA+I       S+ Y   +I+    +  I AA    +KRF++ S 
Sbjct: 60  PSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110

Length = 317

>gnl|CDD|187560 cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 60  LVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           LVLG  G VG H+ RE L       V ++ R  R          ++    +    D + E
Sbjct: 4   LVLGATGLVGKHLLRELLKSPYYSKVTAIVR--RKLTFPEAKEKLVQIVVDFERLDEYLE 61

Query: 118 ALDGVTAVISCVG----GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           A         C+G      GS     K++    +   + A   GV+ F+ +S+ 
Sbjct: 62  AFQNPDVGFCCLGTTRKKAGSQENFRKVDHDYVLKLAKLAKAAGVQHFLLVSSL 115

Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 214

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++L++GGNGF+GSH+    L+ G  V    RS            V + +G+  +    + 
Sbjct: 1   RVLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYELPLGG--VDYIKGDYENRADLES 58

Query: 118 ALDGVTAVI-----SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYIS 165
           AL G+  VI     +       N     + N    +  + A +  G+ + ++ S
Sbjct: 59  ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFAS 112

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G  G +G+ +    L +  +V +L R+   +     A+ V   QG+    ++ + A 
Sbjct: 2   LVTGATGKLGTAVVELLLAKVASVVALVRNPEKAK-AFAADGVEVRQGDYDDPETLERAF 60

Query: 120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           +GV  ++       S S +       + N I AA + GVK  VY+SA+ 
Sbjct: 61  EGVDRLL-----LISPSDLED-RIQQHKNFIDAAKQAGVKHIVYLSASG 103

TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 60  LVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA 118
           LV+GG+GF+G H+  + L RG  TV          L  S +  V +H G+L      ++A
Sbjct: 3   LVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSSSGRVQFHTGDLTDPQDLEKA 62

Query: 119 LD--GVTAVISC---VGGFGSNSYMYKIN--GTANINAIRAASEKGVKRFVYISAAD 168
            +  G   V        G   + Y YK+N  GT N+  I A  + GVK+ VY S+A 
Sbjct: 63  FNEKGPNVVFHTASPDHGSNDDLY-YKVNVQGTRNV--IEACRKCGVKKLVYTSSAS 116

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 21/190 (11%)

Query: 3   TIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVL 62
           ++ +    S S  +RL+A +  G     +  +++         A++     P    +LV+
Sbjct: 8   SLRAAAAASSSPSNRLAA-SLGGALVRRAAAASRGSRATAAAAAQSFRSKEPKDVTVLVV 66

Query: 63  GGNGFVGSHICREALDRGLTVASLSR--------SGRSSLRDSWANNVIWHQGNLLSSDS 114
           G  G++G  + RE + RG  V +++R        +G+   +       +   G++  +DS
Sbjct: 67  GATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVV-FGDVTDADS 125

Query: 115 WKEAL----DGVTAVISCV---GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            ++ L    D V  V+SC+    G   +S  +KI+  A  N++ A  E G K FV +SA 
Sbjct: 126 LRKVLFSEGDPVDVVVSCLASRTGGVKDS--WKIDYQATKNSLDAGREVGAKHFVLLSA- 182

Query: 168 DFGVANYLLQ 177
              V   LL+
Sbjct: 183 -ICVQKPLLE 191

Length = 390

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+LV GG G++GSH  R+ L  G  V    +LS   + +L         +++G+LL    
Sbjct: 2   KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALL---KLQFKFYEGDLLDRAL 58

Query: 115 WKEALD--GVTAVISC-----VGGFGSNSYMYKINGTAN-INAIRAASEKGVKRFVYIS- 165
                +   + AV+       VG    N   Y  N     +N I A  + GVK+F++ S 
Sbjct: 59  LTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSST 118

Query: 166 AADFGVA 172
           AA +G  
Sbjct: 119 AAVYGEP 125

Length = 329

>gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRS-GRSSLRDSWANNVIWHQGNLLSSDSWK 116
           K+ ++G +G  GS I +EAL RG  V ++ R+  + + R      V   Q ++    S  
Sbjct: 2   KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ----GVTILQKDIFDLTSLA 57

Query: 117 EALDGVTAVISCVG-GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
             L G  AVIS  G G   N  ++  +  A I A++ A   GV R + +  A
Sbjct: 58  SDLAGHDAVISAFGAGASDNDELHSKSIEALIEALKGA---GVPRLLVVGGA 106

Length = 211

>gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 57  EKLLVLGGNGFVGSHICREALDRGLTV-ASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           ++ LV G  GF+GSH+       G  V  +  +S     + +  +    H  +L   ++ 
Sbjct: 1   QRALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDEF--HLVDLREMENC 58

Query: 116 KEALDGVTAVISC---VGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            +A +GV  V      +GG G    +++ +   N   N N + AA   GV+RF++ S+A
Sbjct: 59  LKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSA 117

This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 22/135 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+LV GG G++GSH   E L+ G  V    +LS   R +L       + +++G++     
Sbjct: 1   KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHREALPRIEKIRIEFYEGDIRD--- 57

Query: 115 WKEALDGV------TAVI-----SCVGGFGSN--SYMYKINGTANINAIRAASEKGVKRF 161
            + ALD V       AVI       VG        Y Y  N    +N + A    GVK F
Sbjct: 58  -RAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKY-YDNNVVGTLNLLEAMRAHGVKNF 115

Query: 162 VYIS-AADFGVANYL 175
           V+ S AA +G    +
Sbjct: 116 VFSSSAAVYGEPETV 130

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score = 51.5 bits (123), Expect = 4e-08
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRS--------SLRDSWANNVIWHQGNLLS 111
           LV G +GFV SH+  + L+RG  V +  R             L        +    +L  
Sbjct: 2   LVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELA-VADLTD 60

Query: 112 SDSWKEALDGVTAV--ISCVGGFGSN--SYMYKINGTANINAIRAASE-KGVKRFVYISA 166
             S+ E + G   V  ++    F S   + + K      +NA++AA+  K VKRFV  S+
Sbjct: 61  EQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVKRFVLTSS 120

Query: 167 A 167
           A
Sbjct: 121 A 121

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNL-- 109
           + V GG GF+G H+ +  L+ G  V  L RS                A+ V   +G+L  
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQ 60

Query: 110 ----LSSDSWKEALDGVTAVISCVGGF---GSNSYMYKINGTANINAIRAASEKGVKRFV 162
               LS+ + +E    V  VI C   +     N   ++ N     + +  A+   ++RF 
Sbjct: 61  PNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVLELAARLDIQRFH 120

Query: 163 YISAA 167
           Y+S A
Sbjct: 121 YVSTA 125

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSW 115
           K+ V G  GF+GS + RE +  G  V  L+RS   +  L  + A     H+G+L   D  
Sbjct: 2   KVFVTGATGFIGSAVVRELVAAGHEVVGLARSDAGAAKLEAAGA---QVHRGDLEDLDIL 58

Query: 116 KEALDGVTAVISC--VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA 166
           ++A     AVI       F + +   +++  A I A+  A     K  +Y S 
Sbjct: 59  RKAAAEADAVIHLAFTHDFDNFAQACEVDRRA-IEALGEALRGTGKPLIYTSG 110

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 59  LLVLGGNGFVGSHICREAL-DRGLTVASLSRSGRSSLRDSWAN-NVIWHQGNLLSSDSWK 116
           +LV G  G  G  + R  L D G  V +L+R   S    + A   V   QG+L   +S +
Sbjct: 1   ILVFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAAKALAAPGVEVVQGDLDDPESLE 60

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
            AL GV  V   V  F       +I      N + AA   GV+ FV+ S  D
Sbjct: 61  AALKGVYGVFL-VTDFWEAGGEDEI--AQGKNVVDAAKRAGVQHFVFSSVPD 109

NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 31/134 (23%)

Query: 63  GGNGFVGSHICREALDRGLTV-------ASLSRSGRSSLRDSWANNVIWHQ--------- 106
           G  GF+G  +  + L     V       A    S    LR       ++ +         
Sbjct: 3   GATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERIIP 62

Query: 107 --GNL------LSSDSWKEALDGVTAVISC---VGGFGSNSYMYKIN--GTANINAIRAA 153
             G+L      LS + ++E  + V  +I     V      S +   N  GT  +  +R A
Sbjct: 63  VAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTREV--LRLA 120

Query: 154 SEKGVKRFVYISAA 167
            +     F ++S A
Sbjct: 121 KQMKKLPFHHVSTA 134

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 14/120 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWH--QGNLLSSD 113
            +LV G +GF+GSH+    L  G  +    +  S  S      A +  +H   G++  + 
Sbjct: 1   NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDAS 60

Query: 114 SWKEALDGVTAVI---SCVGGFGSN----SYMYK-INGTANINAIRAASEKGVKRFVYIS 165
             +  +     V    + +    S     SY+   + GT N+  + AA     KR V+ S
Sbjct: 61  EVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNV--LEAACVLYRKRVVHTS 118

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSD 113
           K+LV GG G++GSH  R+ L+ G   + + +LS   R +L        V + +G+L   +
Sbjct: 1   KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVTFVEGDLRDRE 60

Query: 114 SWKEALDG--VTAVI-----SCVGGFGSNSYMYKINGTAN-INAIRAASEKGVKRFVYIS 165
                 +   + AVI       VG        Y  N     +N + A  + GVK+F++ S
Sbjct: 61  LLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIFSS 120

Query: 166 AA 167
           +A
Sbjct: 121 SA 122

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
              VLG +G +G  + RE   RG  V  +SRSG           V     + + + S   
Sbjct: 1   TAHVLGASGPIGREVARELRRRGWDVRLVSRSGSKLAWLP---GVEIVAADAMDASSVIA 57

Query: 118 ALDGVTAVISCVG 130
           A  G   +  C  
Sbjct: 58  AARGADVIYHCAN 70

These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 23/125 (18%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWH------------- 105
            LV GG GF+G HI R  L+R   +  +       L  ++   +I H             
Sbjct: 2   CLVTGGGGFLGQHIIRLLLERKEELKEI-----RVLDKAFGPELIEHFEKSQGKTYVTDI 56

Query: 106 QGNLLSSDSWKEALDGVTAVISCVGG---FGSNSY--MYKINGTANINAIRAASEKGVKR 160
           +G++        A  GV+ VI        FG  +Y  + ++N       + A  +  VKR
Sbjct: 57  EGDIKDLSFLFRACQGVSVVIHTAAIVDVFGPPNYEELEEVNVNGTQAVLEACVQNNVKR 116

Query: 161 FVYIS 165
            VY S
Sbjct: 117 LVYTS 121

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+L++GG  F+G  +  E L  G  V   +R GR+         V    G+    D+ +E
Sbjct: 2   KILIIGGTRFIGKALVEELLAAGHDVTVFNR-GRTKPDLP--EGVEHIVGDRNDRDALEE 58

Query: 118 ALDGVT--AVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
            L G     V+  +         Y       +     A +  VK++++IS+A 
Sbjct: 59  LLGGEDFDVVVDTIA--------YT---PRQVERALDAFKGRVKQYIFISSAS 100

Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 31/129 (24%)

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-------------SWANNVIW-HQ 106
           V G +GF+GS + +  L RG TV       R+++RD               A   +   +
Sbjct: 3   VTGASGFIGSWLVKRLLQRGYTV-------RATVRDPGDEKKVAHLLELEGAKERLKLFK 55

Query: 107 GNLLSSDSWKEALDGVTAV--ISCVGGFGSNSY---MYK--INGTANINAIRAASE-KGV 158
            +LL   S+  A+DG   V  ++    F S      M +  + GT  +N + A ++ K V
Sbjct: 56  ADLLDYGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMIEPAVKGT--LNVLEACAKAKSV 113

Query: 159 KRFVYISAA 167
           KR V+ S+ 
Sbjct: 114 KRVVFTSSV 122

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 32/122 (26%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+L+ G  G +G  + R   +RG  V    RS                + +L   D+ +E
Sbjct: 1   KILITGATGMLGRALVRLLKERGYEVIGTGRS-----------RASLFKLDLTDPDAVEE 49

Query: 118 ALDGV--TAVISCVGGFGSNSYM------------YKINGTANINAIRAASEKGVKRFVY 163
           A+       +I+C        Y             Y++N  A  N  RAA E G  R ++
Sbjct: 50  AIRDYKPDVIINCAA------YTRVDKCESDPELAYRVNVLAPENLARAAKEVGA-RLIH 102

Query: 164 IS 165
           IS
Sbjct: 103 IS 104

dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280

>gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+++ GG GF+G  + R     G  V  LSR    +     A  + W     LS   W  
Sbjct: 1   KIVITGGTGFIGRALTRRLTAAGHEVVVLSRRPGKAEGL--AEVITWDG---LSLGPW-- 53

Query: 118 ALDGVTAVI 126
            L G  AVI
Sbjct: 54  ELPGADAVI 62

This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296

>gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 52  PPPPSEKL--LVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGN 108
           P  PSEKL   + G  GF+ SHI R     G   +AS  +       D + +   +H  +
Sbjct: 15  PYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHE--FHLVD 72

Query: 109 LLSSDSWKEALDGVTAVISC---VGGFG---SNSYMYKINGTA-NINAIRAASEKGVKRF 161
           L   ++  +   GV  V +    +GG G   SN  +   N T  + N + AA   GVKRF
Sbjct: 73  LRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF 132

Query: 162 VYISAA 167
            Y S+A
Sbjct: 133 FYASSA 138

Length = 370

>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 26/116 (22%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+L+ G NG +G+ + R AL     V +  R                 + ++   D+  E
Sbjct: 2   KILITGANGQLGTELRR-ALPGEFEVIATDR----------------AELDITDPDAVLE 44

Query: 118 ALDGV--TAVISC-----VGGFGSNSYM-YKINGTANINAIRAASEKGVKRFVYIS 165
            +       VI+      V    S   + + +N T   N  RAA+E G  R V+IS
Sbjct: 45  VIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHIS 99

Length = 281

>gnl|CDD|181609 PRK09009, PRK09009, C factor cell-cell signaling protein; Provisional

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK- 116
            +L++GG+G +G  + ++ L+R    A++  + R    D   +NV WH  ++      K 
Sbjct: 2   NILIVGGSGGIGKAMVKQLLER-YPDATVHATYRHHKPDFQHDNVQWHALDVTDEAEIKQ 60

Query: 117 --EALDGVTAVISCVG 130
             E    +  +I+CVG
Sbjct: 61  LSEQFTQLDWLINCVG 76

Length = 235

>gnl|CDD|234294 TIGR03649, ergot_EASG, ergot alkaloid biosynthesis protein, AFUA_2G17970 family

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 34/117 (29%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-------SWANNVIWHQGNLLS 111
           +L+ GG G   S I R      +     SRS  SS           W +   W   N  S
Sbjct: 2   ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWD--NPFS 59

Query: 112 SDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           SD      DG+   IS V                 I  I  A  KGV+RFV +SA+ 
Sbjct: 60  SD------DGMEPEISAVYLVAPPIPDL---APPMIKFIDFARSKGVRRFVLLSASI 107

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. Length = 285

>gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGR--SSLRDSWANNVIWHQGNLLSSDSWK 116
           +LV G  G +GS +    L+ G  V +L RS    ++L    A  V+   G+L       
Sbjct: 1   ILVTGATGRIGSKVATTLLEAGRPVRALVRSDERAAALAARGAEVVV---GDLDDPAVLA 57

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA 166
            AL GV AV        +          A   A  A  E GVKR V +S+
Sbjct: 58  AALAGVDAVFFLAPPAPTADARPGYVQAAEAFA-SALREAGVKRVVNLSS 106

Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259

>gnl|CDD|187577 cd05267, SDR_a6, atypical (a) SDRs, subgroup 6

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)

Query: 58  KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR--DSWANNVIWHQGNLLSSD 113
           K+L+LG NG     I REA    L  +   L+   R++ R     +  V   +G+ L+SD
Sbjct: 2   KVLILGANG----EIAREATTMLLENSNVELTLFLRNAHRLLHLKSARVTVVEGDALNSD 57

Query: 114 SWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVAN 173
             K A+ G   V + +GG                N ++A    GVKR ++ ++   G+ +
Sbjct: 58  DLKAAMRGQDVVYANLGGTDL--------DQQAENVVQAMKAVGVKRLIWTTS--LGIYD 107

These atypical SDR family members of unknown function have only a partial match to a prototypical glycine-rich NAD(P)-binding motif consensus, GXXG, which conserves part of the motif of extended SDR. Furthermore, they lack the characteristic active site residues of the SDRs. This subgroup is related to phenylcoumaran benzylic ether reductase, an NADPH-dependent aromatic alcohol reductase. One member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 27/131 (20%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           L+ GG GF+G  + +    RG  V  L+RS        W     W       +    ++L
Sbjct: 2   LITGGTGFIGRALTQRLTKRGHEVTILTRSPPPGANTKWEGYKPW-------AGEDADSL 54

Query: 120 DGVTAVISCVG----------GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADF 169
           +G  AVI+  G                   +I+ T  +    AA+E+  K F+  SA   
Sbjct: 55  EGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAAAEQKPKVFISASAV-- 112

Query: 170 GVANYLLQGYY 180
                   GYY
Sbjct: 113 --------GYY 115

This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291

>gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 29/130 (22%)

Query: 58  KLLVLGGNGFVGSHICREALDRG----------LTVASLSRSGRSSLRDSWAN-NVIWHQ 106
           K+LV GG GF+GS+  R  L++           LT A        +L D  ++    + +
Sbjct: 2   KILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYA----GNLENLEDVSSSPRYRFVK 57

Query: 107 GNLLSSDSWKEAL--DGVTAVISCVG------GFGSNSYMYKIN--GTANI-NAIRAASE 155
           G++  ++        + + AVI                   + N  GT  +  A R    
Sbjct: 58  GDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAARKY-- 115

Query: 156 KGVKRFVYIS 165
            GVKRFV+IS
Sbjct: 116 -GVKRFVHIS 124

This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315

>gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 30/119 (25%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+LV G  G VGS I R    RG   +   +        L             +L   ++
Sbjct: 1   KILVTGHRGLVGSAIVRVLARRGYENVVFRT-----SKEL-------------DLTDQEA 42

Query: 115 WKEALDGV--TAVISC---VGG-FGSNSY---MYKINGTANINAIRAASEKGVKRFVYI 164
            +   +      VI     VGG   + +Y     + N   N N I AA   GVK+ V++
Sbjct: 43  VRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFL 101

GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 57  EKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD 113
            K+LV+G  G VGS +  +    G   +T+A  S+   + + +     V   Q +    D
Sbjct: 2   MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVD 60

Query: 114 SWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV 158
           +    +     VI+    F        I        ++A  + GV
Sbjct: 61  ALVALIKDFDLVINAAPPF----VDLTI--------LKACIKTGV 93

Length = 389

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWAN-NVIWHQGNLLSSDSW 115
           LV GG GF+GSH+    L+ G  V    +LS   R ++   + N    + + +LL +   
Sbjct: 3   LVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDTADK 62

Query: 116 KEALDGVTAVISCVGGFGSNSYM----------YKINGTANINAIRAASEKGVKRFVYIS 165
             A      V        +N  +           + N  A  N + A    GVKR V+ S
Sbjct: 63  V-AKKDGDTVFH----LAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFAS 117

Query: 166 AA 167
           ++
Sbjct: 118 SS 119

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 24/134 (17%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA----------NNVIWHQGNL 109
           LV G +GF+GSH+    + +G  V +          +SW           + +    G++
Sbjct: 2   LVTGADGFIGSHLVEALVRQGYEVRAFVLYNS---FNSWGWLDTSPPEVKDKIEVVTGDI 58

Query: 110 LSSDSWKEALDGVTAV------ISCVGGFGS-NSYM-YKINGTANINAIRAASEKGVKRF 161
              DS ++A+ G   V      I+    + + +SY+   + GT N+  ++AA + GV++ 
Sbjct: 59  RDPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYVDTNVTGTLNV--LQAARDLGVEKV 116

Query: 162 VYISAAD-FGVANY 174
           V+ S ++ +G A Y
Sbjct: 117 VHTSTSEVYGTAQY 130

This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297

>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 29/131 (22%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLR------DSWANNVIWHQGNLL 110
           LV GG G++GSH   + L  G  V    +L  S   +LR          +N+++H+ +L 
Sbjct: 9   LVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLR 68

Query: 111 SSDSWKEALDGV------TAVI-----SCVGGFGSNSYMYKIN---GTANINAIRAASEK 156
                KEAL+ V       AVI       VG   +   +Y  N   GT  IN +   ++ 
Sbjct: 69  D----KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGT--INLLEVMAKH 122

Query: 157 GVKRFVYISAA 167
           G K+ V+ S+A
Sbjct: 123 GCKKLVFSSSA 133

Length = 352

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 57  EKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLRDSWANNVI-WHQGNLLSSDS 114
           + +L+ G  G VGS   + A  RG  V +  S +    LR   A+ VI + +G+   +  
Sbjct: 146 QTVLIHGAAGGVGSFAVQLAKARGARVIATASAANADFLRSLGADEVIDYTKGDFERA-- 203

Query: 115 WKEALDGVTAVISCVGG 131
              A  GV AV+  VGG
Sbjct: 204 --AAPGGVDAVLDTVGG 218

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 9/129 (6%)

Query: 45  EAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS---GRSSLRDSWANN 101
           EA   +     ++ + V G  G  G  I  + L +G  V +  R     ++SL     + 
Sbjct: 6   EASEEDAENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQD-PSL 64

Query: 102 VIWHQGNLLSSDSWKEAL-DGVTAVISCVGGF--GSNSYM-YKINGTANINAIRAASEKG 157
            I        SD   EA+ D   AVI C  GF    + +  +K++    +N + A  + G
Sbjct: 65  QIVRADVTEGSDKLVEAIGDDSDAVI-CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAG 123

Query: 158 VKRFVYISA 166
           V RF+ +S+
Sbjct: 124 VTRFILVSS 132

Length = 251

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 25/142 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDR------GLTVASLSRSGRSSLRD----------SWANN 101
            +L+ G  GF+G+++  E LDR       L  A    +  + L              A+ 
Sbjct: 2   NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADR 61

Query: 102 VIWHQGNL------LSSDSWKEALDGVTAVISC---VGGFGSNSYMYKINGTANINAIRA 152
           V    G+L      LS  +W+E  + V  +I     V      S +   N       +R 
Sbjct: 62  VEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRL 121

Query: 153 ASEKGVKRFVYISAADFGVANY 174
           A+    K   Y+S+   G   Y
Sbjct: 122 AATGKPKPLHYVSSISVGETEY 143

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.94
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.92
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.91
PLN02572	442	UDP-sulfoquinovose synthase	99.9
PLN00198	338	anthocyanidin reductase; Provisional	99.9
PLN02214	342	cinnamoyl-CoA reductase	99.9
CHL00194	317	ycf39 Ycf39; Provisional	99.9
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.89
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.89
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.89
PLN02427	386	UDP-apiose/xylose synthase	99.89
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.89
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.89
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.89
PLN02653	340	GDP-mannose 4,6-dehydratase	99.88
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.88
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.88
PLN02650	351	dihydroflavonol-4-reductase	99.88
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.88
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.88
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.87
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.87
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.87
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.87
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.87
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.87
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.87
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.86
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.86
PLN02240	352	UDP-glucose 4-epimerase	99.86
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.86
PLN02686	367	cinnamoyl-CoA reductase	99.85
PRK06482	276	short chain dehydrogenase; Provisional	99.85
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.85
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.85
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.85
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.85
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.84
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.84
PLN02583	297	cinnamoyl-CoA reductase	99.84
PRK05993	277	short chain dehydrogenase; Provisional	99.84
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.84
PRK06179	270	short chain dehydrogenase; Provisional	99.84
PRK06180	277	short chain dehydrogenase; Provisional	99.84
PLN02206	442	UDP-glucuronate decarboxylase	99.84
PRK06398	258	aldose dehydrogenase; Validated	99.84
PLN02260	668	probable rhamnose biosynthetic enzyme	99.84
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.84
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.83
PRK06194	287	hypothetical protein; Provisional	99.83
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.83
PRK07856	252	short chain dehydrogenase; Provisional	99.83
PRK06182	273	short chain dehydrogenase; Validated	99.83
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.83
PLN03209	576	translocon at the inner envelope of chloroplast su	99.83
PRK05717	255	oxidoreductase; Validated	99.83
PLN02778	298	3,5-epimerase/4-reductase	99.82
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.82
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.82
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.82
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.82
PRK07023	243	short chain dehydrogenase; Provisional	99.82
PRK05866	293	short chain dehydrogenase; Provisional	99.82
PLN02253	280	xanthoxin dehydrogenase	99.82
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.82
PRK07806	248	short chain dehydrogenase; Provisional	99.82
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.82
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.82
PRK07024	257	short chain dehydrogenase; Provisional	99.82
PRK09291	257	short chain dehydrogenase; Provisional	99.81
PRK07814	263	short chain dehydrogenase; Provisional	99.81
PRK06483	236	dihydromonapterin reductase; Provisional	99.81
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.81
PRK08263	275	short chain dehydrogenase; Provisional	99.81
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.81
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK07063	260	short chain dehydrogenase; Provisional	99.81
PRK07478	254	short chain dehydrogenase; Provisional	99.81
PRK06523	260	short chain dehydrogenase; Provisional	99.81
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.81
PRK07825	273	short chain dehydrogenase; Provisional	99.81
PRK08267	260	short chain dehydrogenase; Provisional	99.8
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.8
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.8
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.8
PRK08278	273	short chain dehydrogenase; Provisional	99.8
PRK08339	263	short chain dehydrogenase; Provisional	99.8
PRK12367	245	short chain dehydrogenase; Provisional	99.8
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.8
PRK12937	245	short chain dehydrogenase; Provisional	99.8
PRK06101	240	short chain dehydrogenase; Provisional	99.8
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.8
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.8
PRK09135	249	pteridine reductase; Provisional	99.8
PRK06197	306	short chain dehydrogenase; Provisional	99.8
PRK12827	249	short chain dehydrogenase; Provisional	99.8
PRK10538	248	malonic semialdehyde reductase; Provisional	99.8
PRK07201	657	short chain dehydrogenase; Provisional	99.8
PRK07067	257	sorbitol dehydrogenase; Provisional	99.8
PRK05876	275	short chain dehydrogenase; Provisional	99.8
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.8
PLN02996	491	fatty acyl-CoA reductase	99.8
PRK08264	238	short chain dehydrogenase; Validated	99.8
PRK09134	258	short chain dehydrogenase; Provisional	99.8
PRK07102	243	short chain dehydrogenase; Provisional	99.8
PRK06914	280	short chain dehydrogenase; Provisional	99.79
PRK06138	252	short chain dehydrogenase; Provisional	99.79
PRK06128	300	oxidoreductase; Provisional	99.79
PRK05875	276	short chain dehydrogenase; Provisional	99.79
PRK08265	261	short chain dehydrogenase; Provisional	99.79
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.79
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.79
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.79
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.79
PRK07904	253	short chain dehydrogenase; Provisional	99.79
PRK08643	256	acetoin reductase; Validated	99.79
PRK06841	255	short chain dehydrogenase; Provisional	99.79
PRK07775	274	short chain dehydrogenase; Provisional	99.79
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.79
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.79
PRK12746	254	short chain dehydrogenase; Provisional	99.79
PRK07060	245	short chain dehydrogenase; Provisional	99.79
PRK07774	250	short chain dehydrogenase; Provisional	99.79
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.79
PRK05693	274	short chain dehydrogenase; Provisional	99.79
PRK08251	248	short chain dehydrogenase; Provisional	99.79
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.79
PRK12747	252	short chain dehydrogenase; Provisional	99.79
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.79
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.79
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.79
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.79
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.79
PRK08628	258	short chain dehydrogenase; Provisional	99.79
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.79
PRK08589	272	short chain dehydrogenase; Validated	99.79
PRK12743	256	oxidoreductase; Provisional	99.79
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.78
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.78
PRK06500	249	short chain dehydrogenase; Provisional	99.78
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.78
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.78
PRK07454	241	short chain dehydrogenase; Provisional	99.78
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.78
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.78
PRK07035	252	short chain dehydrogenase; Provisional	99.78
PRK07890	258	short chain dehydrogenase; Provisional	99.78
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.78
PRK09242	257	tropinone reductase; Provisional	99.78
PRK06196	315	oxidoreductase; Provisional	99.78
PRK07985	294	oxidoreductase; Provisional	99.78
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.78
PRK06114	254	short chain dehydrogenase; Provisional	99.78
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.78
PRK05650	270	short chain dehydrogenase; Provisional	99.78
PRK05854	313	short chain dehydrogenase; Provisional	99.78
PRK12742	237	oxidoreductase; Provisional	99.78
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.78
PRK06139	330	short chain dehydrogenase; Provisional	99.78
PRK06701	290	short chain dehydrogenase; Provisional	99.78
PRK05884	223	short chain dehydrogenase; Provisional	99.78
PRK07109	334	short chain dehydrogenase; Provisional	99.77
PRK06057	255	short chain dehydrogenase; Provisional	99.77
PRK12939	250	short chain dehydrogenase; Provisional	99.77
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.77
PRK07577	234	short chain dehydrogenase; Provisional	99.77
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.77
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.77
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.77
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.77
PRK08177	225	short chain dehydrogenase; Provisional	99.77
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.77
PRK05872	296	short chain dehydrogenase; Provisional	99.77
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.77
PRK07677	252	short chain dehydrogenase; Provisional	99.77
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.77
PRK07576	264	short chain dehydrogenase; Provisional	99.77
PRK05867	253	short chain dehydrogenase; Provisional	99.77
PRK07326	237	short chain dehydrogenase; Provisional	99.77
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.76
PRK12744	257	short chain dehydrogenase; Provisional	99.76
PRK06924	251	short chain dehydrogenase; Provisional	99.76
PRK07062	265	short chain dehydrogenase; Provisional	99.76
PRK09186	256	flagellin modification protein A; Provisional	99.76
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.76
PRK06172	253	short chain dehydrogenase; Provisional	99.76
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.76
PRK06181	263	short chain dehydrogenase; Provisional	99.76
PRK06484	520	short chain dehydrogenase; Validated	99.76
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.76
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.76
PRK12828	239	short chain dehydrogenase; Provisional	99.76
PRK12829	264	short chain dehydrogenase; Provisional	99.76
PRK08219	227	short chain dehydrogenase; Provisional	99.76
PRK08017	256	oxidoreductase; Provisional	99.76
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.76
PRK08226	263	short chain dehydrogenase; Provisional	99.76
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.75
PRK07831	262	short chain dehydrogenase; Provisional	99.75
PRK05865	854	hypothetical protein; Provisional	99.75
PLN02260	668	probable rhamnose biosynthetic enzyme	99.75
PRK07074	257	short chain dehydrogenase; Provisional	99.75
PRK07791	286	short chain dehydrogenase; Provisional	99.75
PRK07041	230	short chain dehydrogenase; Provisional	99.75
PRK09072	263	short chain dehydrogenase; Provisional	99.75
PRK06949	258	short chain dehydrogenase; Provisional	99.75
PRK07069	251	short chain dehydrogenase; Validated	99.75
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.74
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.74
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.74
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.74
PRK06123	248	short chain dehydrogenase; Provisional	99.74
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.74
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.74
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.74
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.74
PRK06125	259	short chain dehydrogenase; Provisional	99.74
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.74
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.74
PRK05855	582	short chain dehydrogenase; Validated	99.74
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.73
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.73
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.73
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.73
PRK06953	222	short chain dehydrogenase; Provisional	99.73
PRK07578	199	short chain dehydrogenase; Provisional	99.73
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.73
PRK07201	657	short chain dehydrogenase; Provisional	99.73
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.73
PRK08703	239	short chain dehydrogenase; Provisional	99.73
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.73
PRK06940	275	short chain dehydrogenase; Provisional	99.72
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.72
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.72
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.72
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.72
PLN02780	320	ketoreductase/ oxidoreductase	99.72
PRK06484	520	short chain dehydrogenase; Validated	99.72
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK06198	260	short chain dehydrogenase; Provisional	99.71
PRK07832	272	short chain dehydrogenase; Provisional	99.71
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK08324	681	short chain dehydrogenase; Validated	99.71
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK05599	246	hypothetical protein; Provisional	99.71
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.71
PLN00016	378	RNA-binding protein; Provisional	99.7
PLN02503	605	fatty acyl-CoA reductase 2	99.7
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.69
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.69
PRK08303	305	short chain dehydrogenase; Provisional	99.69
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.69
PRK12320	699	hypothetical protein; Provisional	99.68
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.68
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.68
KOG0725	270	consensus Reductases with broad range of substrate	99.68
PRK08862	227	short chain dehydrogenase; Provisional	99.68
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.68
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.67
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.67
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.66
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.66
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.66
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.66
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.65
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.65
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.65
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.64
KOG1208	314	consensus Dehydrogenases with different specificit	99.64
COG1028	251	FabG Dehydrogenases with different specificities (	99.63
PLN00015	308	protochlorophyllide reductase	99.62
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.62
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.6
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.6
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.59
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.58
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.57
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.56
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.54
COG2910	211	Putative NADH-flavin reductase [General function p	99.54
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.51
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.51
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.5
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.49
KOG4288	283	consensus Predicted oxidoreductase [General functi	99.47
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.46
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.46
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.37
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.28
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.26
PRK06720	169	hypothetical protein; Provisional	99.24
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.22
PRK08309	177	short chain dehydrogenase; Provisional	99.17
PTZ00325	321	malate dehydrogenase; Provisional	99.12
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.12
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.1
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	99.06
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	99.03
KOG2774	366	consensus NAD dependent epimerase [General functio	98.94
PLN00106	323	malate dehydrogenase	98.93
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.92
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	98.87
PRK09620	229	hypothetical protein; Provisional	98.82
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.8
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.74
PRK05086	312	malate dehydrogenase; Provisional	98.71
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	98.65
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.56
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.55
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	98.52
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.52
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.44
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.43
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.39
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	98.36
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.35
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.32
PRK14982	340	acyl-ACP reductase; Provisional	98.19
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.15
COG3268	382	Uncharacterized conserved protein [Function unknow	98.13
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	98.09
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.08
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.08
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.01
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.99
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.97
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	97.96
PRK09496	453	trkA potassium transporter peripheral membrane com	97.94
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.92
COG4982	866	3-oxoacyl-[acyl-carrier protein]	97.91
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.89
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.89
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.84
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.82
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	97.82
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.81
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.81
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.76
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.76
PRK05442	326	malate dehydrogenase; Provisional	97.75
PRK04148	134	hypothetical protein; Provisional	97.74
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.72
PRK09496	453	trkA potassium transporter peripheral membrane com	97.7
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.7
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.69
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.67
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.59
PLN02383	344	aspartate semialdehyde dehydrogenase	97.59
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.58
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.55
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.54
PTZ00117	319	malate dehydrogenase; Provisional	97.53
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.52
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.52
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.47
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	97.46
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.37
PRK10669	558	putative cation:proton antiport protein; Provision	97.36
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.34
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	97.33
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.33
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.33
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.33
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.32
PRK06223	307	malate dehydrogenase; Reviewed	97.31
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	97.3
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.26
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.26
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.25
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.25
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.24
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.24
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	97.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.22
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.21
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.21
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.21
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.21
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.21
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.2
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	97.17
PRK08223	287	hypothetical protein; Validated	97.17
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.17
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.16
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.14
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.11
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.11
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	97.11
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.1
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.1
PLN02928	347	oxidoreductase family protein	97.09
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.08
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.07
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.03
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.02
PRK10537	393	voltage-gated potassium channel; Provisional	97.02
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.01
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.01
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.01
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.99
PRK08655	437	prephenate dehydrogenase; Provisional	96.99
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.98
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.98
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.98
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.98
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.98
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.98
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.96
PRK08328	231	hypothetical protein; Provisional	96.94
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.93
PLN02602	350	lactate dehydrogenase	96.93
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.92
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.9
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.9
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.9
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.89
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.87
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	96.87
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.86
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.85
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	96.85
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.85
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.85
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.85
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.83
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.82
PRK06487	317	glycerate dehydrogenase; Provisional	96.82
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.82
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.82
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.81
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	96.8
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.78
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.78
PLN02256	304	arogenate dehydrogenase	96.75
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.74
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.74
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.74
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.73
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.72
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	96.69
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	96.69
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.69
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.68
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.67
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.66
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.66
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.66
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.65
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.65
PRK07574	385	formate dehydrogenase; Provisional	96.65
PRK06436	303	glycerate dehydrogenase; Provisional	96.65
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.64
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.64
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.62
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.61
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.6
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.6
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.6
PRK06932	314	glycerate dehydrogenase; Provisional	96.59
PRK14851	679	hypothetical protein; Provisional	96.59
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.59
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.59
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.58
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.57
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.57
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.55
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.54
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.54
PLN02948	577	phosphoribosylaminoimidazole carboxylase	96.54
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.54
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.53
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.53
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	96.51
PRK06849	389	hypothetical protein; Provisional	96.49
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.49
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.45
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.45
PLN02494	477	adenosylhomocysteinase	96.44
PRK14852	989	hypothetical protein; Provisional	96.42
PLN00203	519	glutamyl-tRNA reductase	96.42
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.39
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.38
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.38
PRK12480	330	D-lactate dehydrogenase; Provisional	96.38
PRK13243	333	glyoxylate reductase; Reviewed	96.37
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.36
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.36
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.36
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.35
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	96.35
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.35
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.35
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.34
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	96.33
PRK07877	722	hypothetical protein; Provisional	96.32
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.32
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.3

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=1.4e-26  Score=181.73  Aligned_cols=137  Identities=25%  Similarity=0.355  Sum_probs=118.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccC--
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGF--  132 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~--  132 (200)
                      ++||||||+||||++.+.+|++.|++|+++++-.....+......++++++|+.|.+.++++|+  ++|.|||+||..  
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~V   80 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISV   80 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECcccccc
Confidence            5899999999999999999999999999999876554332221227999999999999999997  589999999953  


Q ss_pred             ----CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhh
Q 029008          133 ----GSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ----~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                          ..+...|+.|+.|++.|+++|++.|+++|||.|| +.||.+.          .|.++||+||.+.|+++++.
T Consensus        81 gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~  156 (329)
T COG1087          81 GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDA  156 (329)
T ss_pred             chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHHHHHH
Confidence                3677889999999999999999999999999999 6788764          46789999999999999975

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.92  E-value=1.4e-24  Score=174.25  Aligned_cols=136  Identities=34%  Similarity=0.462  Sum_probs=111.0

Q ss_pred             EEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc-ccCCCC-eeEEEccCCCHHHHHHHhcCCCEEEEccccCC--
Q 029008           60 LVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR-DSWANN-VIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (200)
Q Consensus        60 lVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~-~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~--  133 (200)
                      |||||+||||++|+++|+++|  ++|+++++....... .....+ .+++++|++|++++.++++++|+|||+|++..  
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            699999999999999999999  799999987655331 122223 34999999999999999999999999998643  


Q ss_pred             ---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCc---C-------------CcCCcchhhhHHhhHHHHHhh
Q 029008          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGV---A-------------NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~---~-------------~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                         .++.++++|+.|+.+++++|++.++++|||+||. +++.   .             ..+...|+.||+.+|+++.++
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~~a  160 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKALAEKAVLEA  160 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHHHHHHHHhh
Confidence               2356889999999999999999999999999995 2222   0             124468999999999999986


Q ss_pred             cc
Q 029008          194 YS  195 (200)
Q Consensus       194 ~~  195 (200)
                      ..
T Consensus       161 ~~  162 (280)
T PF01073_consen  161 NG  162 (280)
T ss_pred             cc
Confidence            43

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.91  E-value=7.1e-24  Score=175.22  Aligned_cols=140  Identities=21%  Similarity=0.179  Sum_probs=115.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----------ccCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----------DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      +.+|+|+||||+||||++|+++|+++|++|++++|.......          .....++.++.+|+.|.+.+.++++++|
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d   92 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD   92 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence            456899999999999999999999999999999986432110          0011367899999999999999999999


Q ss_pred             EEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhh
Q 029008          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSN  186 (200)
Q Consensus       124 ~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~  186 (200)
                      +|||+|+...      ++...+++|+.|+.+++++|++.++++|||+|| ..||...          .|.+.|+.+|.++
T Consensus        93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~  172 (348)
T PRK15181         93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVN  172 (348)
T ss_pred             EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCCCCCCCChhhHHHHHH
Confidence            9999998532      334568999999999999999999999999998 4676421          3557899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |++++.+
T Consensus       173 e~~~~~~  179 (348)
T PRK15181        173 ELYADVF  179 (348)
T ss_pred             HHHHHHH
Confidence            9998864

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.90  E-value=6.2e-23  Score=174.40  Aligned_cols=142  Identities=17%  Similarity=0.217  Sum_probs=111.3

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------c----------------ccCCCCeeEEEccC
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------R----------------DSWANNVIWHQGNL  109 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~----------------~~~~~~~~~~~~Dl  109 (200)
                      ...++|+|+||||+||||++|+++|+++|++|++++|......      .                .....+++++.+|+
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl  122 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI  122 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence            3357889999999999999999999999999999875321100      0                00013688999999


Q ss_pred             CCHHHHHHHhc--CCCEEEEccccCCC---------CcccchhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcC----
Q 029008          110 LSSDSWKEALD--GVTAVISCVGGFGS---------NSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVA----  172 (200)
Q Consensus       110 ~d~~~~~~~~~--~~d~vi~~ag~~~~---------~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS-~~~~~~----  172 (200)
                      +|++.+.++++  ++|+|||+|+....         +...+++|+.|+.+++++|++.+++ +||++|| ..||.+    
T Consensus       123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~  202 (442)
T PLN02572        123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI  202 (442)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence            99999999998  48999999975321         1234689999999999999999885 8999998 457642    


Q ss_pred             -------------------CcCCcchhhhHHhhHHHHHhh
Q 029008          173 -------------------NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       173 -------------------~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                         ..|.++|+.+|.++|.+++.+
T Consensus       203 ~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~  242 (442)
T PLN02572        203 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFT  242 (442)
T ss_pred             cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHH
Confidence                               123468999999999999875

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.90  E-value=7.8e-23  Score=168.24  Aligned_cols=140  Identities=19%  Similarity=0.239  Sum_probs=112.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----cc-CCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DS-WANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      .++++|+||||+||||++++++|+++|++|+++.|+......     .. ...+++++.+|++|++.+.++++++|+|||
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            357899999999999999999999999999988887543210     11 113688999999999999999999999999


Q ss_pred             ccccCCC----C-cccchhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCcC-----------------------CcCCc
Q 029008          128 CVGGFGS----N-SYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGVA-----------------------NYLLQ  177 (200)
Q Consensus       128 ~ag~~~~----~-~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS-~~~~~~-----------------------~~~~~  177 (200)
                      +|+....    + ...+++|+.++.++++++.+. ++++||++|| ..|+..                       .+|.+
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~  166 (338)
T PLN00198         87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTW  166 (338)
T ss_pred             eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCccc
Confidence            9985321    1 235689999999999999876 5889999999 445521                       12456


Q ss_pred             chhhhHHhhHHHHHhh
Q 029008          178 GYYEGKDSNLSPLLAC  193 (200)
Q Consensus       178 ~Y~~sK~~~E~~~~~~  193 (200)
                      +|+.||.++|++++.+
T Consensus       167 ~Y~~sK~~~E~~~~~~  182 (338)
T PLN00198        167 GYPASKTLAEKAAWKF  182 (338)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            7999999999998875

>PLN02214 cinnamoyl-CoA reductase

Probab=99.90  E-value=8.4e-23  Score=168.49  Aligned_cols=140  Identities=24%  Similarity=0.269  Sum_probs=115.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----cc--CCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DS--WANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      .++++|+||||+||||++++++|+++|++|++++|+.+....    ..  ...+++++.+|++|++.+.++++++|+|||
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            357899999999999999999999999999999997553110    11  123588999999999999999999999999


Q ss_pred             ccccCC-CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc--ccCcCC-------------------cCCcchhhhHHh
Q 029008          128 CVGGFG-SNSYMYKINGTANINAIRAASEKGVKRFVYISAA--DFGVAN-------------------YLLQGYYEGKDS  185 (200)
Q Consensus       128 ~ag~~~-~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~--~~~~~~-------------------~~~~~Y~~sK~~  185 (200)
                      +|+... .+...+++|+.++.+++++|.+.++++||++||.  .|+.+.                   .+.+.|+.+|.+
T Consensus        88 ~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK~~  167 (342)
T PLN02214         88 TASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMV  167 (342)
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHHHHHHH
Confidence            999753 4567789999999999999999999999999983  465321                   134579999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +|++++.+
T Consensus       168 aE~~~~~~  175 (342)
T PLN02214        168 AEQAAWET  175 (342)
T ss_pred             HHHHHHHH
Confidence            99999875

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.90  E-value=7.1e-23  Score=167.23  Aligned_cols=134  Identities=25%  Similarity=0.297  Sum_probs=112.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC-CC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG-SN  135 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~-~~  135 (200)
                      |+|+||||||++|++++++|+++|++|++++|+.++. ......+++++.+|++|++++.++++++|+|||+++... ++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~   79 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDL   79 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCc
Confidence            4899999999999999999999999999999986432 111234789999999999999999999999999987532 34


Q ss_pred             cccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          136 SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...+++|+.++.+++++|+++|+++||++||.  +....+..+|..+|..+|+++++.
T Consensus        80 ~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~--~~~~~~~~~~~~~K~~~e~~l~~~  135 (317)
T CHL00194         80 YNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL--NAEQYPYIPLMKLKSDIEQKLKKS  135 (317)
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCCEEEEeccc--cccccCCChHHHHHHHHHHHHHHc
Confidence            56788999999999999999999999999984  222334567999999999999876

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.89  E-value=1.2e-22  Score=162.84  Aligned_cols=139  Identities=23%  Similarity=0.278  Sum_probs=114.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      .+++|+||||+||||++|++.|+++||.|++.+|+++....       .....+.+.+.+|+.|++++.+++++||.|||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH   84 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH   84 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence            57899999999999999999999999999999999876321       11244689999999999999999999999999


Q ss_pred             ccccCCCC-----cccchhhHHHHHHHHHHHHHcC-CCEEEEEeccc--cCc-CC---------cC----------Ccch
Q 029008          128 CVGGFGSN-----SYMYKINGTANINAIRAASEKG-VKRFVYISAAD--FGV-AN---------YL----------LQGY  179 (200)
Q Consensus       128 ~ag~~~~~-----~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~--~~~-~~---------~~----------~~~Y  179 (200)
                      +|.+...+     ....+..+.|+.+++++|++.. ++|||++||..  ... +.         ..          ..+|
T Consensus        85 ~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y  164 (327)
T KOG1502|consen   85 TASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLWY  164 (327)
T ss_pred             eCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHHH
Confidence            99986532     2588999999999999999887 99999999942  111 11         01          1479


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      ..+|..+|+...+.
T Consensus       165 ~~sK~lAEkaAw~f  178 (327)
T KOG1502|consen  165 ALSKTLAEKAAWEF  178 (327)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999977763

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.89  E-value=1.2e-22  Score=167.46  Aligned_cols=137  Identities=20%  Similarity=0.236  Sum_probs=110.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc----cccc-------CCCCeeEEEccCCCHHHHHHHhcC--CC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDS-------WANNVIWHQGNLLSSDSWKEALDG--VT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~--~d  123 (200)
                      |+|+||||+||||++++++|+++|++|++++|..+..    ....       ...+++++.+|++|.+.+.+++++  +|
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d   80 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT   80 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence            5899999999999999999999999999999875421    1110       023588999999999999999985  69


Q ss_pred             EEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCC---EEEEEec-cccCcC----------CcCCcchhhhH
Q 029008          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVK---RFVYISA-ADFGVA----------NYLLQGYYEGK  183 (200)
Q Consensus       124 ~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~---~~v~vSS-~~~~~~----------~~~~~~Y~~sK  183 (200)
                      +|||+|+...      .+...+++|+.|+.+++++|.+.+++   +||++|| ..||..          ..|.++|+.||
T Consensus        81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK  160 (343)
T TIGR01472        81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAK  160 (343)
T ss_pred             EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCCChhHHHH
Confidence            9999999643      23345678999999999999988764   8999999 456642          13567899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      .++|.+++.+
T Consensus       161 ~~~e~~~~~~  170 (343)
T TIGR01472       161 LYAHWITVNY  170 (343)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.89  E-value=3.3e-22  Score=166.55  Aligned_cols=142  Identities=20%  Similarity=0.225  Sum_probs=114.2

Q ss_pred             CCCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           51 VPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        51 ~~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .+...+|+|+||||+||||++++++|.++|++|++++|........ .....+++.+|++|.+.+..+++++|+|||+|+
T Consensus        16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa   94 (370)
T PLN02695         16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA   94 (370)
T ss_pred             CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-ccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence            3455778999999999999999999999999999999864331111 112357889999999999999999999999997


Q ss_pred             cCC-------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------------CcCCcchhhhHHhh
Q 029008          131 GFG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------------NYLLQGYYEGKDSN  186 (200)
Q Consensus       131 ~~~-------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------------~~~~~~Y~~sK~~~  186 (200)
                      ...       .+...+..|+.++.+++++|++.++++||++|| ..|+..                ..|.+.|+.+|.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~~~  174 (370)
T PLN02695         95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLAT  174 (370)
T ss_pred             ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHHHHHH
Confidence            542       234456789999999999999999999999999 456521                23456899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |++++.+
T Consensus       175 E~~~~~~  181 (370)
T PLN02695        175 EELCKHY  181 (370)
T ss_pred             HHHHHHH
Confidence            9998774

>PLN02427 UDP-apiose/xylose synthase

Probab=99.89  E-value=1.9e-22  Score=168.89  Aligned_cols=141  Identities=17%  Similarity=0.226  Sum_probs=111.5

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCccc---c---cCCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLR---D---SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~---~---~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      .+.+.|+|+||||+||||++|+++|+++ |++|++++|+......   .   .+..+++++.+|+.|.+.+.++++++|+
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~   89 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL   89 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence            3445679999999999999999999998 5999999986543111   0   1224799999999999999999999999


Q ss_pred             EEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC------------------------
Q 029008          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN------------------------  173 (200)
Q Consensus       125 vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~------------------------  173 (200)
                      |||+|+...      .+...+..|+.++.+++++|++.+ ++||++|| ..||...                        
T Consensus        90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~  168 (386)
T PLN02427         90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDES  168 (386)
T ss_pred             EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCccccccccccccccccccc
Confidence            999998532      123456789999999999998877 79999999 4566320                        


Q ss_pred             --------cCCcchhhhHHhhHHHHHhh
Q 029008          174 --------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 --------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                              .+.+.|+.+|.++|++++.+
T Consensus       169 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~  196 (386)
T PLN02427        169 PCIFGSIEKQRWSYACAKQLIERLIYAE  196 (386)
T ss_pred             ccccCCCCccccchHHHHHHHHHHHHHH
Confidence                    11247999999999999864

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.89  E-value=2e-22  Score=164.42  Aligned_cols=139  Identities=19%  Similarity=0.256  Sum_probs=111.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--c-----cCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--D-----SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      .+++|+||||+||||++++++|+++|++|++++|+......  .     ....+++++.+|++|++.+.++++++|+|||
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            46899999999999999999999999999999987543210  0     0124789999999999999999999999999


Q ss_pred             ccccCC----CC-cccchhhHHHHHHHHHHHHHc-CCCEEEEEeccc---cCcCC-------------cC------Ccch
Q 029008          128 CVGGFG----SN-SYMYKINGTANINAIRAASEK-GVKRFVYISAAD---FGVAN-------------YL------LQGY  179 (200)
Q Consensus       128 ~ag~~~----~~-~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~~---~~~~~-------------~~------~~~Y  179 (200)
                      +|+...    .+ ...+++|+.++.+++++|.+. ++++||++||..   |+...             .+      .+.|
T Consensus        83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y  162 (322)
T PLN02662         83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKLWY  162 (322)
T ss_pred             eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccchH
Confidence            998642    22 257889999999999999887 889999999942   54210             01      2479


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|..+|++++.+
T Consensus       163 ~~sK~~~E~~~~~~  176 (322)
T PLN02662        163 VLSKTLAEEAAWKF  176 (322)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.89  E-value=4.2e-22  Score=162.81  Aligned_cols=139  Identities=20%  Similarity=0.232  Sum_probs=111.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--c-----cCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--D-----SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      .+++|+||||+||||++++++|+++|++|+++.|+......  .     ....+++++.+|++|++.+.++++++|+|||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            46899999999999999999999999999999887654211  0     1124689999999999999999999999999


Q ss_pred             ccccCC----CC-cccchhhHHHHHHHHHHHHHc-CCCEEEEEecc-c--cCcCC-------------------cCCcch
Q 029008          128 CVGGFG----SN-SYMYKINGTANINAIRAASEK-GVKRFVYISAA-D--FGVAN-------------------YLLQGY  179 (200)
Q Consensus       128 ~ag~~~----~~-~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~-~--~~~~~-------------------~~~~~Y  179 (200)
                      +|+...    ++ ...+++|+.++.+++++|++. ++++||++||. .  |+.+.                   .+.+.|
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y  163 (322)
T PLN02986         84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWY  163 (322)
T ss_pred             eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccch
Confidence            998642    12 246789999999999999885 68999999994 2  33211                   124679


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|..+|++++++
T Consensus       164 ~~sK~~aE~~~~~~  177 (322)
T PLN02986        164 PLSKILAENAAWEF  177 (322)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988875

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.89  E-value=3.5e-22  Score=163.66  Aligned_cols=135  Identities=22%  Similarity=0.216  Sum_probs=111.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ++|+|+||||+|+||++++++|+++|  ++|++++|+......   .....++.++.+|++|++.+.++++++|+|||+|
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence            46899999999999999999999986  789999887543211   1112468899999999999999999999999999


Q ss_pred             ccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          130 GGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       130 g~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      |...      ++...+++|+.++.++++++.+.++++||++||.   .+..|.++|+.+|+++|++++.
T Consensus        83 g~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~---~~~~p~~~Y~~sK~~~E~l~~~  148 (324)
T TIGR03589        83 ALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD---KAANPINLYGATKLASDKLFVA  148 (324)
T ss_pred             ccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC---CCCCCCCHHHHHHHHHHHHHHH
Confidence            8632      2245789999999999999999999999999994   2334567899999999999876

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.88  E-value=5e-22  Score=163.55  Aligned_cols=140  Identities=19%  Similarity=0.212  Sum_probs=112.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc----cccc------CCCCeeEEEccCCCHHHHHHHhcC--
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDS------WANNVIWHQGNLLSSDSWKEALDG--  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~--  121 (200)
                      .++++|+||||+||||++++++|+++|++|++++|.....    .+..      ...++.++.+|++|.+.+.++++.  
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   83 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK   83 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence            4568999999999999999999999999999999875421    1110      123588999999999999998874  


Q ss_pred             CCEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCC-----EEEEEec-cccCcCC---------cCCcchh
Q 029008          122 VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVK-----RFVYISA-ADFGVAN---------YLLQGYY  180 (200)
Q Consensus       122 ~d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~-----~~v~vSS-~~~~~~~---------~~~~~Y~  180 (200)
                      +|+|||+||...      .+...+++|+.++.++++++.+.+++     +||++|| ..||...         .|.+.|+
T Consensus        84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~E~~~~~p~~~Y~  163 (340)
T PLN02653         84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPPQSETTPFHPRSPYA  163 (340)
T ss_pred             CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCCCCCCCCCCCCChhH
Confidence            699999999632      33456789999999999999988865     8999998 4576532         2567899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .||.++|++++.+
T Consensus       164 ~sK~~~e~~~~~~  176 (340)
T PLN02653        164 VAKVAAHWYTVNY  176 (340)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.88  E-value=4e-22  Score=156.21  Aligned_cols=143  Identities=21%  Similarity=0.195  Sum_probs=115.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCC-----cccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRS-----SLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~  127 (200)
                      |++|||||+||||++++++++++..  +|++++.-.-.     .......++..|+++|+.|.+.+.++++  ++|+|+|
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            5899999999999999999999864  46776653211     1112224589999999999999999998  5899999


Q ss_pred             ccccC------CCCcccchhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcC------------CcCCcchhhhHHhhH
Q 029008          128 CVGGF------GSNSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVA------------NYLLQGYYEGKDSNL  187 (200)
Q Consensus       128 ~ag~~------~~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS-~~~~~~------------~~~~~~Y~~sK~~~E  187 (200)
                      .|+-+      ..+..+.++|+.|+.++++++++...+ ||++||+ -+||.-            -.|.++|++||++.+
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD  160 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD  160 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHH
Confidence            99854      356788999999999999999998764 9999999 456642            257799999999999


Q ss_pred             HHHHhhccCccc
Q 029008          188 SPLLACYSLCCL  199 (200)
Q Consensus       188 ~~~~~~~~~~~~  199 (200)
                      .++++|+..++|
T Consensus       161 ~lVray~~TYgl  172 (340)
T COG1088         161 LLVRAYVRTYGL  172 (340)
T ss_pred             HHHHHHHHHcCC
Confidence            999999765543

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.88  E-value=4.9e-22  Score=164.09  Aligned_cols=137  Identities=18%  Similarity=0.243  Sum_probs=109.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCC-CHHHHHHHhcCCCEEEEccccCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLL-SSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ||+|+||||+||||++|+++|++. |++|++++|+...........+++++.+|+. +.+.+.++++++|+|||+|+...
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~~~   80 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAIAT   80 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECcccCC
Confidence            468999999999999999999986 6999999986533111111246899999997 77888888999999999998532


Q ss_pred             ------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchhhhHHhhHHH
Q 029008          134 ------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKDSNLSP  189 (200)
Q Consensus       134 ------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------------~~~~~Y~~sK~~~E~~  189 (200)
                            ++...+++|+.++.+++++|++.+ ++||++|| ..||...                 .+.+.|+.+|.++|++
T Consensus        81 ~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~e~~  159 (347)
T PRK11908         81 PATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRV  159 (347)
T ss_pred             hHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHHHHHH
Confidence                  345678999999999999999887 79999999 4565311                 1234799999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++.+
T Consensus       160 ~~~~  163 (347)
T PRK11908        160 IWAY  163 (347)
T ss_pred             HHHH
Confidence            9864

>PLN02650 dihydroflavonol-4-reductase

Probab=99.88  E-value=8.8e-22  Score=162.80  Aligned_cols=139  Identities=21%  Similarity=0.309  Sum_probs=111.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--c-----cCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--D-----SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ..++||||||+||||++++++|+++|++|++++|+......  .     ....+++++.+|++|++.++++++++|+|||
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH   83 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH   83 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence            46799999999999999999999999999999987543211  0     0113578999999999999999999999999


Q ss_pred             ccccCC----CC-cccchhhHHHHHHHHHHHHHcC-CCEEEEEecc-ccCcC--------C-------------cCCcch
Q 029008          128 CVGGFG----SN-SYMYKINGTANINAIRAASEKG-VKRFVYISAA-DFGVA--------N-------------YLLQGY  179 (200)
Q Consensus       128 ~ag~~~----~~-~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~-~~~~~--------~-------------~~~~~Y  179 (200)
                      +|+...    .+ ...+++|+.++.+++++|.+.+ +++|||+||. .|+..        +             .+.++|
T Consensus        84 ~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y  163 (351)
T PLN02650         84 VATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGWMY  163 (351)
T ss_pred             eCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccchH
Confidence            998542    12 3578999999999999999877 7899999995 33311        0             012479


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.||.++|++++.+
T Consensus       164 ~~sK~~~E~~~~~~  177 (351)
T PLN02650        164 FVSKTLAEKAAWKY  177 (351)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.88  E-value=8.5e-22  Score=163.05  Aligned_cols=140  Identities=19%  Similarity=0.254  Sum_probs=109.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c-cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      +.+++|+||||+||||++++++|+++|++|++++|+......   . ....+++++.+|++|.+.+.++++++|+|||+|
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            456799999999999999999999999999999887543211   0 112468899999999999999999999999999


Q ss_pred             ccCCC--------Ccc-----cchhhHHHHHHHHHHHHHcC-CCEEEEEec-cccCcCC---------------------
Q 029008          130 GGFGS--------NSY-----MYKINGTANINAIRAASEKG-VKRFVYISA-ADFGVAN---------------------  173 (200)
Q Consensus       130 g~~~~--------~~~-----~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS-~~~~~~~---------------------  173 (200)
                      +....        +..     .+++|+.++.+++++|.+.+ +++||++|| ..|+...                     
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~  167 (353)
T PLN02896         88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVW  167 (353)
T ss_pred             ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHhh
Confidence            86421        122     23445699999999998875 789999999 5565210                     


Q ss_pred             ---cCCcchhhhHHhhHHHHHhh
Q 029008          174 ---YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 ---~~~~~Y~~sK~~~E~~~~~~  193 (200)
                         ++.++|+.||.++|++++.+
T Consensus       168 ~~~~~~~~Y~~sK~~~E~~~~~~  190 (353)
T PLN02896        168 NTKASGWVYVLSKLLTEEAAFKY  190 (353)
T ss_pred             ccCCCCccHHHHHHHHHHHHHHH
Confidence               02247999999999999875

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.88  E-value=6.6e-22  Score=160.34  Aligned_cols=127  Identities=19%  Similarity=0.175  Sum_probs=104.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFGS  134 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~~  134 (200)
                      |+||||||+||||++++++|+++| +|++++|...            .+.+|++|++.+.++++  ++|+|||+|+....
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~   67 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST------------DYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAV   67 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc------------cccCCCCCHHHHHHHHHhcCCCEEEECCccCCc
Confidence            479999999999999999999999 7988887531            24579999999999988  58999999996532


Q ss_pred             ------CcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhHHHHHhhccCc
Q 029008          135 ------NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNLSPLLACYSLC  197 (200)
Q Consensus       135 ------~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~~~~  197 (200)
                            +...+++|+.++.+++++|++.|+ +||++|| .+|+..          ..|.+.|+.+|.++|++++.+.+.+
T Consensus        68 ~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~~~~  146 (299)
T PRK09987         68 DKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETDATAPLNVYGETKLAGEKALQEHCAKH  146 (299)
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence                  234568999999999999999886 7999998 455422          2355789999999999998865443

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.87  E-value=7.4e-22  Score=151.62  Aligned_cols=138  Identities=14%  Similarity=0.088  Sum_probs=113.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCC-CCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWA-NNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~-~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .+|.++||||+++||.++++.|.++|++|++..|+.++..+  .... ..+.++..|++|.++++.+++       ++|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            45899999999999999999999999999999999876322  1112 468999999999988666554       5899


Q ss_pred             EEEccccC----------CCCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGF----------GSNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~----------~~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||..          ++|+.++++|+.|.++..++.    .+++.++||++||...-.+-+..+.|+++|+++.++.
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~~vY~ATK~aV~~fs  164 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFS  164 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCCccchhhHHHHHHHH
Confidence            99999953          257889999999999877765    5566679999999765566677789999999999887


Q ss_pred             Hh
Q 029008          191 LA  192 (200)
Q Consensus       191 ~~  192 (200)
                      +.
T Consensus       165 ~~  166 (246)
T COG4221         165 LG  166 (246)
T ss_pred             HH
Confidence            65

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.87  E-value=2e-21  Score=158.88  Aligned_cols=139  Identities=19%  Similarity=0.249  Sum_probs=110.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----c--cCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----D--SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      .+|+++||||+||||++++++|+++|++|++++|+......     .  ....+++++.+|++|++.++++++++|+|||
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            46899999999999999999999999999998887653211     0  1124688999999999999999999999999


Q ss_pred             ccccCC------CCcccchhhHHHHHHHHHHHHHc-CCCEEEEEecc-ccCcCC---------------c------CCcc
Q 029008          128 CVGGFG------SNSYMYKINGTANINAIRAASEK-GVKRFVYISAA-DFGVAN---------------Y------LLQG  178 (200)
Q Consensus       128 ~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~-~~~~~~---------------~------~~~~  178 (200)
                      |||...      .+...+++|+.++.+++++|.+. +.++||++||. .|+.+.               .      +.++
T Consensus        84 ~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~  163 (325)
T PLN02989         84 TASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQW  163 (325)
T ss_pred             eCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccc
Confidence            999532      23456789999999999999875 57899999994 332210               0      1257


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |+.+|.++|++++.+
T Consensus       164 Y~~sK~~~E~~~~~~  178 (325)
T PLN02989        164 YVLSKTLAEDAAWRF  178 (325)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999998864

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.87  E-value=2.2e-21  Score=160.41  Aligned_cols=139  Identities=19%  Similarity=0.176  Sum_probs=112.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc---c-CCCCeeEEEccCCCHHHHHHHhcC--CCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD---S-WANNVIWHQGNLLSSDSWKEALDG--VTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~  128 (200)
                      ++|+|+||||+||||+++++.|+++|++|++++|+.......   . ...++.++.+|++|++.+.+++++  +|+|||+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~   82 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL   82 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence            568999999999999999999999999999999876542111   1 123577899999999999999885  6999999


Q ss_pred             cccC------CCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEec-cccCcC-----------CcCCcchhhhHHhhHHH
Q 029008          129 VGGF------GSNSYMYKINGTANINAIRAASEKG-VKRFVYISA-ADFGVA-----------NYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       129 ag~~------~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS-~~~~~~-----------~~~~~~Y~~sK~~~E~~  189 (200)
                      ||..      .++...+++|+.++.++++++.+.+ +++||++|| ..|+.+           ..+.+.|+.+|.++|.+
T Consensus        83 A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~  162 (349)
T TIGR02622        83 AAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAELV  162 (349)
T ss_pred             CcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHHHHH
Confidence            9843      1345678999999999999998876 789999999 456532           13467899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++.+
T Consensus       163 ~~~~  166 (349)
T TIGR02622       163 IASY  166 (349)
T ss_pred             HHHH
Confidence            8764

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=2e-21  Score=154.15  Aligned_cols=138  Identities=21%  Similarity=0.322  Sum_probs=118.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccC--CCCeeEEEccCCCHHHHHHHhc--CCCEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSW--ANNVIWHQGNLLSSDSWKEALD--GVTAV  125 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~--~~~~~~~~~Dl~d~~~~~~~~~--~~d~v  125 (200)
                      .++||||||+||||++.+.+|+++|+.|++++.-.....+      ...  ...+.++.+|++|.+.++++|+  .+|.|
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V   81 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV   81 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence            5799999999999999999999999999999875443211      112  3689999999999999999998  58999


Q ss_pred             EEccccC------CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchhhhHHhhH
Q 029008          126 ISCVGGF------GSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKDSNL  187 (200)
Q Consensus       126 i~~ag~~------~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------~~~~~Y~~sK~~~E  187 (200)
                      +|.|+..      ..+...+..|+.|++++++.+++++++.+||.|| ..||.+.           .|.++|+++|.++|
T Consensus        82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~iE  161 (343)
T KOG1371|consen   82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAIE  161 (343)
T ss_pred             EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHHH
Confidence            9999853      3567788999999999999999999999999999 5688653           47889999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      ++++..
T Consensus       162 ~i~~d~  167 (343)
T KOG1371|consen  162 EIIHDY  167 (343)
T ss_pred             HHHHhh
Confidence            999975

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.87  E-value=1.9e-21  Score=172.82  Aligned_cols=139  Identities=18%  Similarity=0.223  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHH-HHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS-WKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~d~vi~~ag~  131 (200)
                      ..+|+|+||||+||||++|+++|+++ |++|++++|............+++++.+|++|.+. ++++++++|+|||+||.
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~  392 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAI  392 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEECccc
Confidence            35789999999999999999999986 79999999876432211122478999999998655 57788999999999985


Q ss_pred             CC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchhhhHHhhH
Q 029008          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKDSNL  187 (200)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------------~~~~~Y~~sK~~~E  187 (200)
                      ..      .+...+++|+.++.+++++|++.+ ++|||+|| ..||...                 .+.+.|+.||.++|
T Consensus       393 ~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~~~E  471 (660)
T PRK08125        393 ATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQLLD  471 (660)
T ss_pred             cCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHHHHHH
Confidence            43      234577899999999999999988 79999999 4566321                 12247999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      ++++.+
T Consensus       472 ~~~~~~  477 (660)
T PRK08125        472 RVIWAY  477 (660)
T ss_pred             HHHHHH
Confidence            999875

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.87  E-value=3.2e-21  Score=156.39  Aligned_cols=135  Identities=29%  Similarity=0.302  Sum_probs=110.7

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCC-CEEEEccccCCCC-
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGV-TAVISCVGGFGSN-  135 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-d~vi~~ag~~~~~-  135 (200)
                      +||||||+||||++|+++|+++|++|++++|.........  ..+.++.+|++|.+.+.+.++.+ |+|||+|+....+ 
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~~   79 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPD   79 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc--cccceeeecccchHHHHHHHhcCCCEEEEccccCchhh
Confidence            4999999999999999999999999999999766533222  57899999999998888888888 9999999965422 


Q ss_pred             ------cccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcC------------CcCCcchhhhHHhhHHHHHhhc
Q 029008          136 ------SYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVA------------NYLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       136 ------~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~------------~~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                            ...+++|+.++.+++++|++.++++||+.||. .++..            ..|.+.|+.+|.++|++++.+.
T Consensus        80 ~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~  157 (314)
T COG0451          80 SNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYA  157 (314)
T ss_pred             hhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                  23789999999999999999999999997773 33321            1223359999999999999864

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.87  E-value=3.6e-21  Score=159.22  Aligned_cols=138  Identities=17%  Similarity=0.169  Sum_probs=107.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC-cc-c---cc-CCCCeeEEEccCCCHHHHHHHhcC--CCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS-SL-R---DS-WANNVIWHQGNLLSSDSWKEALDG--VTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~-~---~~-~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~  127 (200)
                      |++|+||||+||||+++++.|+++|++++++.++... .. .   .. ...++.++.+|++|++.+++++++  +|+|||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            4789999999999999999999999886554433221 10 0   10 123578899999999999999984  899999


Q ss_pred             ccccCC------CCcccchhhHHHHHHHHHHHHH---------cCCCEEEEEec-cccCcC------------CcCCcch
Q 029008          128 CVGGFG------SNSYMYKINGTANINAIRAASE---------KGVKRFVYISA-ADFGVA------------NYLLQGY  179 (200)
Q Consensus       128 ~ag~~~------~~~~~~~~n~~~~~~~~~~a~~---------~~~~~~v~vSS-~~~~~~------------~~~~~~Y  179 (200)
                      +||...      .+...+++|+.++.+++++|.+         .++++||++|| ..|+..            ..+.+.|
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s~Y  160 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY  160 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCChh
Confidence            998643      3356789999999999999976         24679999999 456631            2356789


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.||.++|.+++.+
T Consensus       161 ~~sK~~~e~~~~~~  174 (355)
T PRK10217        161 SASKASSDHLVRAW  174 (355)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.9e-21  Score=164.13  Aligned_cols=138  Identities=24%  Similarity=0.243  Sum_probs=119.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc------cc-CCCCeeEEEccCCCHHHHHHHhcC--CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALDG--VT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~-~~~~~~~~~~Dl~d~~~~~~~~~~--~d  123 (200)
                      ..+|+|+||||+|.+|+.+++++++.+. ++++++|++.....      .. ...+..++-+|+.|.+.+++++++  +|
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            4689999999999999999999999985 77777877644211      11 135789999999999999999998  99


Q ss_pred             EEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhhc
Q 029008          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       124 ~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                      +|||.|+.-+      .+.+.+++|+.|+.|++++|.++|+++||++||   ++.-.|.+.||+||..+|.++..+.
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iST---DKAV~PtNvmGaTKr~aE~~~~a~~  401 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST---DKAVNPTNVMGATKRLAEKLFQAAN  401 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEec---CcccCCchHhhHHHHHHHHHHHHHh
Confidence            9999999643      567788999999999999999999999999999   6777889999999999999999763

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.86  E-value=9.4e-21  Score=154.58  Aligned_cols=136  Identities=31%  Similarity=0.412  Sum_probs=112.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC---
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG---  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~---  133 (200)
                      |+|+||||+|+||.++++.|+++|++|++++|+.+... .....+++++.+|+.|++++.++++++|+|||+++...   
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~~~~   79 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR-NLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYRLWA   79 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc-ccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecccCC
Confidence            47999999999999999999999999999999765421 12223688999999999999999999999999998532   


Q ss_pred             -CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC-C----------c---CCcchhhhHHhhHHHHHhh
Q 029008          134 -SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA-N----------Y---LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 -~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~-~----------~---~~~~Y~~sK~~~E~~~~~~  193 (200)
                       .+...+++|+.++.++++++.+.++++||++|| ..|+.. .          .   ....|+.+|.+.|++++++
T Consensus        80 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~  155 (328)
T TIGR03466        80 PDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEM  155 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHHHHHHHHHHH
Confidence             345678899999999999999999999999999 445531 1          0   1357999999999999875

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02240 UDP-glucose 4-epimerase

Probab=99.86  E-value=1e-20  Score=156.24  Aligned_cols=140  Identities=23%  Similarity=0.317  Sum_probs=112.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------cc---cCCCCeeEEEccCCCHHHHHHHhc--CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RD---SWANNVIWHQGNLLSSDSWKEALD--GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~---~~~~~~~~~~~Dl~d~~~~~~~~~--~~  122 (200)
                      .++++|+||||+|++|.+++++|+++|++|++++|......      ..   ....+++++.+|++|++.+..+++  ++
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   82 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF   82 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence            35689999999999999999999999999999987543210      00   112468899999999999999886  68


Q ss_pred             CEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC----------cCCcchhhhHHh
Q 029008          123 TAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN----------YLLQGYYEGKDS  185 (200)
Q Consensus       123 d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~----------~~~~~Y~~sK~~  185 (200)
                      |+|||+||...      .+...+++|+.++.+++++|.+.++++||++||. .|+...          .+...|+.+|.+
T Consensus        83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~  162 (352)
T PLN02240         83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLF  162 (352)
T ss_pred             CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence            99999998532      2345789999999999999999899999999994 465321          245789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +|++++++
T Consensus       163 ~e~~~~~~  170 (352)
T PLN02240        163 IEEICRDI  170 (352)
T ss_pred             HHHHHHHH
Confidence            99999753

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.86  E-value=1.2e-20  Score=154.92  Aligned_cols=137  Identities=23%  Similarity=0.294  Sum_probs=109.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      |+|+||||+|+||.+++++|+++|++|++++|.......      .....++.++.+|++|++.+.++++  ++|+|||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~   80 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF   80 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence            479999999999999999999999999998765332111      1112357789999999999999886  58999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC-----------cCCcchhhhHHhhHHHH
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN-----------YLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~-----------~~~~~Y~~sK~~~E~~~  190 (200)
                      ||...      .+...+++|+.++.+++++|++.++++||++||. .|+...           .+.+.|+.+|.++|+++
T Consensus        81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~  160 (338)
T PRK10675         81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL  160 (338)
T ss_pred             CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHHHHH
Confidence            98543      2245678999999999999999999999999994 465321           35688999999999999


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +++
T Consensus       161 ~~~  163 (338)
T PRK10675        161 TDL  163 (338)
T ss_pred             HHH
Confidence            864

>PLN02686 cinnamoyl-CoA reductase

Probab=99.85  E-value=6.5e-21  Score=158.65  Aligned_cols=141  Identities=20%  Similarity=0.221  Sum_probs=111.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--cc--------CCCCeeEEEccCCCHHHHHHHhcCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DS--------WANNVIWHQGNLLSSDSWKEALDGV  122 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~--------~~~~~~~~~~Dl~d~~~~~~~~~~~  122 (200)
                      ..++|+|+||||+||||++++++|+++|++|+++.|+.+....  ..        ...++.++.+|++|++.+.++++++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~  129 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGC  129 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhc
Confidence            3467899999999999999999999999999998886433111  00        0125789999999999999999999


Q ss_pred             CEEEEccccCCC------CcccchhhHHHHHHHHHHHHHc-CCCEEEEEecc---ccCc--CC-----------------
Q 029008          123 TAVISCVGGFGS------NSYMYKINGTANINAIRAASEK-GVKRFVYISAA---DFGV--AN-----------------  173 (200)
Q Consensus       123 d~vi~~ag~~~~------~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~---~~~~--~~-----------------  173 (200)
                      |.|||+++....      +....++|+.++.+++++|.+. ++++||++||.   .|+.  +.                 
T Consensus       130 d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~~  209 (367)
T PLN02686        130 AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFC  209 (367)
T ss_pred             cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhhc
Confidence            999999986432      2456688999999999999886 79999999994   3432  10                 


Q ss_pred             -cCCcchhhhHHhhHHHHHhh
Q 029008          174 -YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 -~~~~~Y~~sK~~~E~~~~~~  193 (200)
                       .+.++|+.+|.++|++++.+
T Consensus       210 ~~p~~~Y~~sK~~~E~~~~~~  230 (367)
T PLN02686        210 RDNKLWYALGKLKAEKAAWRA  230 (367)
T ss_pred             ccccchHHHHHHHHHHHHHHH
Confidence             12357999999999998764

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.85  E-value=6e-21  Score=152.70  Aligned_cols=138  Identities=21%  Similarity=0.142  Sum_probs=109.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .|+++||||+|+||++++++|+++|++|+++.|+.+....  .....++.++.+|++|.+++.++++       ++|+||
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   81 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV   81 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4789999999999999999999999999999997543211  1123478899999999998887664       479999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||+|...          .++..+++|+.++.++++++    ++.+.++||++||.....+.++.+.|+.+|+++|.+++.
T Consensus        82 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~  161 (276)
T PRK06482         82 SNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIEGFVEA  161 (276)
T ss_pred             ECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCCCCchhHHHHHHHHHHHHH
Confidence            9998642          12346789999999999997    555678999999954333445678999999999998876


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      +
T Consensus       162 l  162 (276)
T PRK06482        162 V  162 (276)
T ss_pred             H
Confidence            4

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.85  E-value=2.4e-21  Score=154.07  Aligned_cols=132  Identities=22%  Similarity=0.186  Sum_probs=101.4

Q ss_pred             EEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc---cc----CCCCee----EEEccCCCHHHHHHHhc--CCCE
Q 029008           59 LLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---DS----WANNVI----WHQGNLLSSDSWKEALD--GVTA  124 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~----~~~~~~----~~~~Dl~d~~~~~~~~~--~~d~  124 (200)
                      ||||||+|.||+.|+++|++.+. +++++++++.....   ..    ...++.    .+.+|+.|.+.+..+++  ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            79999999999999999999984 79999998654211   11    122343    45899999999999999  8999


Q ss_pred             EEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       125 vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |||.|+.-+      .+...+++|+.|+.+++++|.++++++||++||   +..-.|.+.||+||..+|.++...
T Consensus        81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~IST---DKAv~PtnvmGatKrlaE~l~~~~  152 (293)
T PF02719_consen   81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFIST---DKAVNPTNVMGATKRLAEKLVQAA  152 (293)
T ss_dssp             EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEE---CGCSS--SHHHHHHHHHHHHHHHH
T ss_pred             EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc---cccCCCCcHHHHHHHHHHHHHHHH
Confidence            999999632      556788999999999999999999999999999   667778899999999999999975

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.85  E-value=6.7e-21  Score=149.81  Aligned_cols=139  Identities=17%  Similarity=0.156  Sum_probs=112.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------cccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++++++||||+++||.+++++|+++|++|+++.|+.++..      +......+.++.+|++|++++..+.+       
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            46789999999999999999999999999999999987521      12223478899999999999988764       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~----a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      .+|++|||||...          ....++++|+.+...+..+    +.+++.++||+++|...-.+.+..+.|++||+++
T Consensus        84 ~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa~v  163 (265)
T COG0300          84 PIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFV  163 (265)
T ss_pred             cccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcchHHHHHHHHHH
Confidence            4899999999532          2246789999888766555    4566778999999966556667788999999998


Q ss_pred             HHHHHh
Q 029008          187 LSPLLA  192 (200)
Q Consensus       187 E~~~~~  192 (200)
                      -.+.+.
T Consensus       164 ~~fSea  169 (265)
T COG0300         164 LSFSEA  169 (265)
T ss_pred             HHHHHH
Confidence            877664

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.85  E-value=1.3e-20  Score=149.30  Aligned_cols=140  Identities=16%  Similarity=0.122  Sum_probs=111.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCC-CeeEEEccCCCHHHHHHHhc-----
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWAN-NVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~-~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ...+|+|+||||+++||.+++.+|+++|.+++.+.|...+...      ..... ++.++++|++|.+++++.++     
T Consensus         9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen    9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999998888887655221      11223 59999999999999997653     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                        ++|++|||||...          +....+++|+.|+..+.+++    ++.+-++||.+||..+-.+-+....|++||+
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~Y~ASK~  168 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKH  168 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccccchHHH
Confidence              6899999999643          12457899999999888776    4445579999999654455555569999999


Q ss_pred             hhHHHHHh
Q 029008          185 SNLSPLLA  192 (200)
Q Consensus       185 ~~E~~~~~  192 (200)
                      +++.+...
T Consensus       169 Al~~f~et  176 (282)
T KOG1205|consen  169 ALEGFFET  176 (282)
T ss_pred             HHHHHHHH
Confidence            99998775

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.85  E-value=5.8e-20  Score=154.03  Aligned_cols=138  Identities=26%  Similarity=0.345  Sum_probs=113.1

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc----
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      ....+++|+||||+|+||++++++|+++|++|++++|+......       .....+++++.+|++|++++.++++    
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            33567899999999999999999999999999999998643210       0113478999999999999999987    


Q ss_pred             CCCEEEEccccCC-CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          121 GVTAVISCVGGFG-SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       121 ~~d~vi~~ag~~~-~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ++|+||||++... .....+++|+.++.++++++++.|+++||++||...   ..+...|..+|...|+.++.
T Consensus       136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v---~~p~~~~~~sK~~~E~~l~~  205 (390)
T PLN02657        136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICV---QKPLLEFQRAKLKFEAELQA  205 (390)
T ss_pred             CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccc---cCcchHHHHHHHHHHHHHHh
Confidence            5999999988532 235568899999999999999999999999999532   13456789999999998875

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.84  E-value=1.3e-20  Score=146.87  Aligned_cols=136  Identities=29%  Similarity=0.384  Sum_probs=114.2

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCC--CEEEEccccCC---
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGV--TAVISCVGGFG---  133 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d~vi~~ag~~~---  133 (200)
                      |+||||+||||.+++++|+++|+.|+.+.|+...........+++++.+|+.|.+.++++++..  |+|||+|+...   
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~   80 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNPE   80 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHHH
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeeccccccc
Confidence            7999999999999999999999999999988766432221238999999999999999999865  99999999752   


Q ss_pred             ---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC----------cCCcchhhhHHhhHHHHHhhc
Q 029008          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN----------YLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                         .....++.|+.++.++++++.+.+++++|++||. .|+...          .+.+.|+.+|...|++++.+.
T Consensus        81 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~~  155 (236)
T PF01370_consen   81 SFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLRDYA  155 (236)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               3456788999999999999999999999999994 566542          245789999999999998753

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.84  E-value=1.7e-20  Score=159.09  Aligned_cols=134  Identities=20%  Similarity=0.196  Sum_probs=104.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..++|+||||+||||++|+++|+++|++|++++|.......    .....+++++.+|+.+..     +.++|+|||+|+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~-----~~~~D~ViHlAa  193 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPI-----LLEVDQIYHLAC  193 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECcccccc-----ccCCCEEEECce
Confidence            45799999999999999999999999999999985322111    111236788888987653     468999999998


Q ss_pred             cCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC---------------CcCCcchhhhHHhhHH
Q 029008          131 GFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA---------------NYLLQGYYEGKDSNLS  188 (200)
Q Consensus       131 ~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~---------------~~~~~~Y~~sK~~~E~  188 (200)
                      ...      ++...+++|+.++.+++++|++.++ +||++|| .+||.+               ..+.+.|+.+|.++|+
T Consensus       194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~  272 (436)
T PLN02166        194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET  272 (436)
T ss_pred             eccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHH
Confidence            532      2345678999999999999999886 8999998 457642               1124679999999999


Q ss_pred             HHHhhc
Q 029008          189 PLLACY  194 (200)
Q Consensus       189 ~~~~~~  194 (200)
                      +++.+.
T Consensus       273 ~~~~y~  278 (436)
T PLN02166        273 LAMDYH  278 (436)
T ss_pred             HHHHHH
Confidence            998763

>PLN02583 cinnamoyl-CoA reductase

Probab=99.84  E-value=4.5e-20  Score=149.46  Aligned_cols=139  Identities=19%  Similarity=0.228  Sum_probs=109.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-----ccc--CCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDS--WANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      .+++|+||||+|+||++++++|+++|++|++++|+.....     ...  ...+++++.+|++|.+.+.+++.++|.|+|
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~   84 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC   84 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            4579999999999999999999999999999998643211     111  124688999999999999999999999999


Q ss_pred             ccccCCC----CcccchhhHHHHHHHHHHHHHc-CCCEEEEEecc-c--cCcCC---------cC----------Ccchh
Q 029008          128 CVGGFGS----NSYMYKINGTANINAIRAASEK-GVKRFVYISAA-D--FGVAN---------YL----------LQGYY  180 (200)
Q Consensus       128 ~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~-~--~~~~~---------~~----------~~~Y~  180 (200)
                      .++....    ++..+++|+.++.+++++|.+. ++++||++||. .  ++.+.         ..          ...|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~  164 (297)
T PLN02583         85 CFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWHA  164 (297)
T ss_pred             eCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccHHH
Confidence            8765432    3567899999999999999886 58899999994 2  23110         00          11699


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .||..+|++++++
T Consensus       165 ~sK~~aE~~~~~~  177 (297)
T PLN02583        165 LAKTLSEKTAWAL  177 (297)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999654

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-20  Score=150.81  Aligned_cols=137  Identities=15%  Similarity=0.023  Sum_probs=107.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--------CCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--------GVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--------~~d~vi  126 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.+...+ ....+++++.+|++|+++++++++        .+|++|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~-l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAA-LEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            46799999999999999999999999999999998654221 112367889999999988877654        479999


Q ss_pred             EccccCC----------CCcccchhhHHHHH----HHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANI----NAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~----~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .+...+++|+.+..    .+++.+++.+.++||++||...-.+.++...|+.+|+++|.+++.
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~  161 (277)
T PRK05993         82 NNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKYRGAYNASKFAIEGLSLT  161 (277)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCCCccchHHHHHHHHHHHHHH
Confidence            9998532          12346889999954    456666677778999999954334556678999999999998875

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.84  E-value=7.4e-21  Score=150.42  Aligned_cols=134  Identities=26%  Similarity=0.358  Sum_probs=94.0

Q ss_pred             EEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc--c-------------c---cCCCCeeEEEccCCCH------HH
Q 029008           61 VLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL--R-------------D---SWANNVIWHQGNLLSS------DS  114 (200)
Q Consensus        61 VtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~-------------~---~~~~~~~~~~~Dl~d~------~~  114 (200)
                      |||||||+|.+|+++|++++.  +|+|+.|..+...  +             .   ....+++++.+|++++      +.
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999987  8999999864310  0             0   0157999999999875      56


Q ss_pred             HHHHhcCCCEEEEccccCC---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccc-cCcC------------------
Q 029008          115 WKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAAD-FGVA------------------  172 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~-~~~~------------------  172 (200)
                      ++.+.+++|+|||||+..+   +....+++|+.|+.++++.|.+.+.++|+|+||+. .+..                  
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~~  160 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLDP  160 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--EEE-
T ss_pred             hhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccccccchh
Confidence            7788889999999999754   44668899999999999999977777999999942 1111                  


Q ss_pred             -CcCCcchhhhHHhhHHHHHhhc
Q 029008          173 -NYLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       173 -~~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                       ....++|.+||+.+|+++++++
T Consensus       161 ~~~~~~gY~~SK~~aE~~l~~a~  183 (249)
T PF07993_consen  161 PQGFPNGYEQSKWVAERLLREAA  183 (249)
T ss_dssp             -TTSEE-HHHHHHHHHHHHHHHH
T ss_pred             hccCCccHHHHHHHHHHHHHHHH
Confidence             1234689999999999999874

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.84  E-value=3e-20  Score=148.16  Aligned_cols=135  Identities=17%  Similarity=0.117  Sum_probs=109.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~~  128 (200)
                      +++++||||+|+||.+++++|+++|++|++++|+.+....   ..+++++.+|++|+++++++++       .+|+||||
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~   80 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP---IPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNN   80 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            4689999999999999999999999999999998654321   3478899999999999998876       37999999


Q ss_pred             cccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          129 VGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       129 ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +|...          .++..+++|+.++.++++++    ++.+.++||++||...-.+.+....|+.+|+++|.+++..
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l  159 (270)
T PRK06179         81 AGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAPYMALYAASKHAVEGYSESL  159 (270)
T ss_pred             CCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCCCccHHHHHHHHHHHHHHHH
Confidence            99642          23557899999999888874    5567889999999532234455678999999999987763

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.84  E-value=4.2e-20  Score=148.07  Aligned_cols=139  Identities=12%  Similarity=0.062  Sum_probs=109.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ++++++||||+|+||++++++|+++|++|++++|+.+....  .....++.++.+|++|++++.++++       ++|+|
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            35789999999999999999999999999999997654211  1123468889999999999888776       47999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |||+|...          .+...+++|+.++.++++++.    +.+.++||++||...-.+.++...|+.+|+++|.+++
T Consensus        83 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~~~~~Y~~sK~a~~~~~~  162 (277)
T PRK06180         83 VNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMPGIGYYCGSKFALEGISE  162 (277)
T ss_pred             EECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCCCcchhHHHHHHHHHHHH
Confidence            99999642          123458999999999998853    4456799999995433345567899999999999887


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       163 ~l  164 (277)
T PRK06180        163 SL  164 (277)
T ss_pred             HH
Confidence            63

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.84  E-value=2.9e-20  Score=157.90  Aligned_cols=133  Identities=21%  Similarity=0.234  Sum_probs=103.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..|+|+||||+||||++|+++|+++|++|++++|......+    .....+++++.+|+.++.     +.++|+|||+|+
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~-----l~~~D~ViHlAa  192 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPI-----LLEVDQIYHLAC  192 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChh-----hcCCCEEEEeee
Confidence            45799999999999999999999999999999875322111    112346788899987653     457999999998


Q ss_pred             cCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------cCCcchhhhHHhhHH
Q 029008          131 GFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------YLLQGYYEGKDSNLS  188 (200)
Q Consensus       131 ~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~---------------~~~~~Y~~sK~~~E~  188 (200)
                      ...      ++...+++|+.++.+++++|++.++ +||++|| ..|+...               .+.+.|+.+|.++|+
T Consensus       193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~  271 (442)
T PLN02206        193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAET  271 (442)
T ss_pred             ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHHHH
Confidence            532      3355778999999999999999886 8999999 4575321               124679999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      ++..+
T Consensus       272 ~~~~y  276 (442)
T PLN02206        272 LTMDY  276 (442)
T ss_pred             HHHHH
Confidence            99864

>PRK06398 aldose dehydrogenase; Validated

Probab=99.84  E-value=7.3e-20  Score=145.28  Aligned_cols=133  Identities=12%  Similarity=0.124  Sum_probs=109.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~  127 (200)
                      ++|+++||||+|+||.+++++|+++|++|++++|+....      .++.++.+|++|+++++++++       ++|++||
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~   78 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY------NDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN   78 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc------CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            568999999999999999999999999999999875442      368899999999998887765       5899999


Q ss_pred             ccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          128 CVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       128 ~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |||...          .++..+++|+.+++.+++++.+    .+.++||++||.....+.++...|+.+|++++.+.+..
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaal~~~~~~l  158 (258)
T PRK06398         79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRNAAAYVTSKHAVLGLTRSI  158 (258)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCCCCchhhhhHHHHHHHHHHH
Confidence            998532          2345679999999988887743    45679999999543445567789999999999998864

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.84  E-value=5e-20  Score=164.06  Aligned_cols=139  Identities=18%  Similarity=0.314  Sum_probs=110.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC--CCcEEEeecCCCC-ccc----ccCCCCeeEEEccCCCHHHHHHHh--cCCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRS-SLR----DSWANNVIWHQGNLLSSDSWKEAL--DGVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~~~-~~~----~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~v  125 (200)
                      .+|+||||||+||||++++++|+++  |++|++++|.... ...    .....+++++.+|++|.+.+..++  .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            5689999999999999999999998  6889998875311 000    111347899999999999888766  579999


Q ss_pred             EEccccCC------CCcccchhhHHHHHHHHHHHHHcC-CCEEEEEec-cccCcCC-------------cCCcchhhhHH
Q 029008          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKG-VKRFVYISA-ADFGVAN-------------YLLQGYYEGKD  184 (200)
Q Consensus       126 i~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS-~~~~~~~-------------~~~~~Y~~sK~  184 (200)
                      ||+|+...      .+...+++|+.++.+++++|++.+ +++||++|| ..||...             .|.+.|+.+|.
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK~  164 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKA  164 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHHHH
Confidence            99999643      223567899999999999999887 889999999 4565421             24578999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      ++|++++.+
T Consensus       165 ~aE~~v~~~  173 (668)
T PLN02260        165 GAEMLVMAY  173 (668)
T ss_pred             HHHHHHHHH
Confidence            999999864

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.84  E-value=5.9e-20  Score=151.82  Aligned_cols=137  Identities=20%  Similarity=0.235  Sum_probs=105.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCc-EEEeecCCC-Cc---cccc-CCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGR-SS---LRDS-WANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~~r~~~-~~---~~~~-~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      |+|+||||+||||.+++++|+++|++ |+++++... ..   .... ...+++++.+|++|.+++.++++  ++|+|||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL   80 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence            47999999999999999999999986 554554321 11   0111 12357889999999999999987  48999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHc---------CCCEEEEEec-cccCcC--------------------
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEK---------GVKRFVYISA-ADFGVA--------------------  172 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~---------~~~~~v~vSS-~~~~~~--------------------  172 (200)
                      ||...      .+...+++|+.++.+++++|.+.         ++++||++|| ..|+..                    
T Consensus        81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~~  160 (352)
T PRK10084         81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTA  160 (352)
T ss_pred             CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccCC
Confidence            98642      34678899999999999999864         4568999999 456631                    


Q ss_pred             CcCCcchhhhHHhhHHHHHhh
Q 029008          173 NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ..|.+.|+.+|.++|.+++.+
T Consensus       161 ~~p~~~Y~~sK~~~E~~~~~~  181 (352)
T PRK10084        161 YAPSSPYSASKASSDHLVRAW  181 (352)
T ss_pred             CCCCChhHHHHHHHHHHHHHH
Confidence            134578999999999998864

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.83  E-value=1.8e-20  Score=151.11  Aligned_cols=126  Identities=27%  Similarity=0.355  Sum_probs=97.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~-  133 (200)
                      |+|||||++|+||++|.+.|.++|++|+.+.|.                ..|+.|.+.+.+.++  ++|+||||||... 
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~   64 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNV   64 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT----------------CS-TTSHHHHHHHHHHH--SEEEE------H
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch----------------hcCCCCHHHHHHHHHHhCCCeEeccceeecH
Confidence            689999999999999999999999999998766                468999999999887  4899999998754 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc----------CCcCCcchhhhHHhhHHHHHhhccCc
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV----------ANYLLQGYYEGKDSNLSPLLACYSLC  197 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~----------~~~~~~~Y~~sK~~~E~~~~~~~~~~  197 (200)
                           .++..+++|+.++.+++++|.+.|. ++||+|| .+|+-          +..|.+.||.+|.++|+.+++.++.+
T Consensus        65 ~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d~~~P~~~YG~~K~~~E~~v~~~~~~~  143 (286)
T PF04321_consen   65 DACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDDPPNPLNVYGRSKLEGEQAVRAACPNA  143 (286)
T ss_dssp             HHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS----SSHHHHHHHHHHHHHHHH-SSE
T ss_pred             HhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCcccccccCCCCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence                 4567899999999999999999886 8999999 44421          22467899999999999999977766


Q ss_pred             cc
Q 029008          198 CL  199 (200)
Q Consensus       198 ~~  199 (200)
                      .|
T Consensus       144 ~I  145 (286)
T PF04321_consen  144 LI  145 (286)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK06194 hypothetical protein; Provisional

Probab=99.83  E-value=5e-20  Score=148.08  Aligned_cols=139  Identities=13%  Similarity=0.066  Sum_probs=107.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+++++||||+|+||++++++|+++|++|++++|+.+...+   .  ....++.++.+|++|.++++++++       ++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            45799999999999999999999999999999987543111   1  112367889999999999988776       47


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCC------CEEEEEeccccCcCCcCCcchhhh
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGV------KRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~------~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                      |+||||||...          .++..+++|+.++.++++++    .+.+.      +++|++||.....+.++...|+.+
T Consensus        85 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~s  164 (287)
T PRK06194         85 HLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGIYNVS  164 (287)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCcchHHH
Confidence            99999999642          12345789999999877774    44443      589999995433344566789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++.|.+++..
T Consensus       165 K~a~~~~~~~l  175 (287)
T PRK06194        165 KHAVVSLTETL  175 (287)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.83  E-value=5.8e-20  Score=148.89  Aligned_cols=138  Identities=24%  Similarity=0.291  Sum_probs=113.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcc---------------cccCCCCeeEEEccCC------CHHH
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL---------------RDSWANNVIWHQGNLL------SSDS  114 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---------------~~~~~~~~~~~~~Dl~------d~~~  114 (200)
                      +++++||||||+|.+++.+|+.+- .+|+|++|..+.+.               .+.+..+++++.+|+.      +...
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            479999999999999999999875 49999999876421               1234578999999996      4577


Q ss_pred             HHHHhcCCCEEEEccccCC---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcC-------------------
Q 029008          115 WKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVA-------------------  172 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~-------------------  172 (200)
                      ++.+.+.+|.||||++..+   +.......|+.|+..+++.|...+.|.++||||.+.+..                   
T Consensus        81 ~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~~~  160 (382)
T COG3320          81 WQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNV  160 (382)
T ss_pred             HHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccccccccccc
Confidence            8888889999999999654   567888999999999999998888889999999542211                   


Q ss_pred             -CcCCcchhhhHHhhHHHHHhhc
Q 029008          173 -NYLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       173 -~~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                       ....++|++|||++|.+++++.
T Consensus       161 ~~~~~~GY~~SKwvaE~Lvr~A~  183 (382)
T COG3320         161 GQGLAGGYGRSKWVAEKLVREAG  183 (382)
T ss_pred             cCccCCCcchhHHHHHHHHHHHh
Confidence             1235799999999999999874

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.1e-19  Score=143.50  Aligned_cols=137  Identities=20%  Similarity=0.196  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+..   ....++.++.+|+.|+++++++++       ++|+||
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   80 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET---VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLV   80 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh---hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3578999999999999999999999999999999976441   123468899999999998888775       469999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHHH----c-CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAASE----K-GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~-~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ||+|...          .++..+++|+.++..+++++.+    . +.++||++||.....+.+....|+.+|+++|.+++
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~l~~  160 (252)
T PRK07856         81 NNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPGTAAYGAAKAGLLNLTR  160 (252)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCCCchhHHHHHHHHHHHH
Confidence            9998532          1245689999999999988754    2 34689999996544455667899999999999998


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       161 ~l  162 (252)
T PRK07856        161 SL  162 (252)
T ss_pred             HH
Confidence            64

>PRK06182 short chain dehydrogenase; Validated

Probab=99.83  E-value=3.7e-20  Score=147.99  Aligned_cols=136  Identities=17%  Similarity=0.058  Sum_probs=106.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~~  128 (200)
                      +++++||||+|+||++++++|+++|++|++++|+.++..+ ....+++++.+|++|+++++++++       ++|++|||
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~-~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED-LASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            5799999999999999999999999999999998654221 112458899999999999988776       68999999


Q ss_pred             cccCC----------CCcccchhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          129 VGGFG----------SNSYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       129 ag~~~----------~~~~~~~~n~~~~~~~~~----~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      +|...          .++..+++|+.+...+++    .+++.+.++||++||.....+.+....|+.+|++.+.+++.
T Consensus        82 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~  159 (273)
T PRK06182         82 AGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPLGAWYHATKFALEGFSDA  159 (273)
T ss_pred             CCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCCCccHhHHHHHHHHHHHHH
Confidence            99632          235567899988655544    55666778999999954333344556799999999998764

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.83  E-value=1e-19  Score=148.55  Aligned_cols=139  Identities=27%  Similarity=0.413  Sum_probs=113.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCc---cccc--CCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSS---LRDS--WANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~---~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ++.+++||||+||+|++++++|++++  .+|++++..+...   .+..  ....++++.+|+.|...+.+++.++ .|+|
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh   81 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH   81 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence            46799999999999999999999998  7999998876521   1111  2568999999999999999999999 7788


Q ss_pred             ccccC------CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccc---cCcC-----------CcCCcchhhhHHhhH
Q 029008          128 CVGGF------GSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD---FGVA-----------NYLLQGYYEGKDSNL  187 (200)
Q Consensus       128 ~ag~~------~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~---~~~~-----------~~~~~~Y~~sK~~~E  187 (200)
                      ||+..      .+.+..+++|+.||.+++++|.+.|++++|++||..   .|.+           ......|+.||+.+|
T Consensus        82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~sKa~aE  161 (361)
T KOG1430|consen   82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGESKALAE  161 (361)
T ss_pred             eccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCccccccccchHHHHHH
Confidence            77642      246778999999999999999999999999999952   1111           122358999999999


Q ss_pred             HHHHhhc
Q 029008          188 SPLLACY  194 (200)
Q Consensus       188 ~~~~~~~  194 (200)
                      ++++++-
T Consensus       162 ~~Vl~an  168 (361)
T KOG1430|consen  162 KLVLEAN  168 (361)
T ss_pred             HHHHHhc
Confidence            9999864

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.83  E-value=8.4e-20  Score=156.88  Aligned_cols=140  Identities=24%  Similarity=0.280  Sum_probs=111.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc---c-----------CCCCeeEEEccCCCHHHHHHHh
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD---S-----------WANNVIWHQGNLLSSDSWKEAL  119 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~-----------~~~~~~~~~~Dl~d~~~~~~~~  119 (200)
                      .++++|+||||+|+||++++++|+++|++|++++|+.++....   .           ...+++++.+|+.|.+++.+++
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            4678999999999999999999999999999999986542110   0           0135889999999999999999


Q ss_pred             cCCCEEEEccccCC----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccC---cCC---cCCcchhhhHHhhHHH
Q 029008          120 DGVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG---VAN---YLLQGYYEGKDSNLSP  189 (200)
Q Consensus       120 ~~~d~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~---~~~---~~~~~Y~~sK~~~E~~  189 (200)
                      .++|+||||+|...    ++...+++|+.++.++++++.+.++++||++||....   .+.   .....|..+|..+|+.
T Consensus       158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~p~~~~~sk~~~~~~KraaE~~  237 (576)
T PLN03209        158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGFPAAILNLFWGVLCWKRKAEEA  237 (576)
T ss_pred             cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCccccchhhHHHHHHHHHHHHHH
Confidence            99999999998643    3345678999999999999999999999999995321   111   1234577788899988


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      +...
T Consensus       238 L~~s  241 (576)
T PLN03209        238 LIAS  241 (576)
T ss_pred             HHHc
Confidence            8764

>PRK05717 oxidoreductase; Validated

Probab=99.83  E-value=1.2e-19  Score=143.51  Aligned_cols=141  Identities=11%  Similarity=0.049  Sum_probs=109.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ..++|+++||||+|+||++++++|+++|++|++++|+..+..+  .....++.++.+|++|++++.++++       .+|
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id   86 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLD   86 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            3567899999999999999999999999999999887543211  1113468899999999988876554       479


Q ss_pred             EEEEccccCCC------------CcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFGS------------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~~------------~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||+|....            ++..+++|+.+++++++++.+.   ..++||++||.....+.+....|+.+|+++|.
T Consensus        87 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~~~~Y~~sKaa~~~  166 (255)
T PRK05717         87 ALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPDTEAYAASKGGLLA  166 (255)
T ss_pred             EEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCCCCcchHHHHHHHHH
Confidence            99999996431            2357899999999999998642   23689999985433344556789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       167 ~~~~l  171 (255)
T PRK05717        167 LTHAL  171 (255)
T ss_pred             HHHHH
Confidence            88864

>PLN02778 3,5-epimerase/4-reductase

Probab=99.82  E-value=1.3e-19  Score=146.79  Aligned_cols=122  Identities=19%  Similarity=0.238  Sum_probs=93.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~  131 (200)
                      ...|+||||||+||||++|+++|+++|++|+...                   .|+.|.+.+...++  ++|+|||+||.
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~-------------------~~~~~~~~v~~~l~~~~~D~ViH~Aa~   67 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS-------------------GRLENRASLEADIDAVKPTHVFNAAGV   67 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec-------------------CccCCHHHHHHHHHhcCCCEEEECCcc
Confidence            4557999999999999999999999999987432                   24556666766665  68999999996


Q ss_pred             CC---------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCc------------C-C----cCCcchhhhHHh
Q 029008          132 FG---------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV------------A-N----YLLQGYYEGKDS  185 (200)
Q Consensus       132 ~~---------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~------------~-~----~~~~~Y~~sK~~  185 (200)
                      ..         ++...+++|+.++.+++++|++.+++++++.|+..|+.            . +    ++.+.|+.+|.+
T Consensus        68 ~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~Yg~sK~~  147 (298)
T PLN02778         68 TGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSFYSKTKAM  147 (298)
T ss_pred             cCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCchHHHHHH
Confidence            53         12346789999999999999999987655544444421            0 1    123689999999


Q ss_pred             hHHHHHhhc
Q 029008          186 NLSPLLACY  194 (200)
Q Consensus       186 ~E~~~~~~~  194 (200)
                      +|.+++.+.
T Consensus       148 ~E~~~~~y~  156 (298)
T PLN02778        148 VEELLKNYE  156 (298)
T ss_pred             HHHHHHHhh
Confidence            999998753

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.82  E-value=1.3e-19  Score=147.01  Aligned_cols=136  Identities=20%  Similarity=0.224  Sum_probs=106.4

Q ss_pred             eEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCC-c---ccc-cCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEc
Q 029008           58 KLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRS-S---LRD-SWANNVIWHQGNLLSSDSWKEALDG--VTAVISC  128 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~-~---~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~  128 (200)
                      +|+||||+|+||.+++++|+++|  ++|++++|.... .   ... ....+++++.+|++|++++.+++++  +|+|||+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~   80 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF   80 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence            58999999999999999999987  789888764211 1   111 1123688999999999999999987  8999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcCC-----------cCCcchhhhHHhhHHH
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVAN-----------YLLQGYYEGKDSNLSP  189 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS-~~~~~~~-----------~~~~~Y~~sK~~~E~~  189 (200)
                      |+...      .+...+++|+.++.+++++|.+.+.+ ++|++|| ..||...           .+.+.|+.+|+.+|.+
T Consensus        81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~  160 (317)
T TIGR01181        81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHL  160 (317)
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Confidence            98643      23456799999999999999887544 8999998 4455321           2456799999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++.+
T Consensus       161 ~~~~  164 (317)
T TIGR01181       161 VRAY  164 (317)
T ss_pred             HHHH
Confidence            8864

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.82  E-value=3.1e-19  Score=134.41  Aligned_cols=125  Identities=35%  Similarity=0.477  Sum_probs=106.0

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCccc
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYM  138 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~  138 (200)
                      |+|+||||++|+.++++|+++|++|+++.|++++...   ..+++++.+|+.|++.+.++++++|+||+++|....    
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~----   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK----   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT----
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc----
Confidence            7999999999999999999999999999999775333   679999999999999999999999999999986543    


Q ss_pred             chhhHHHHHHHHHHHHHcCCCEEEEEeccc-cCcCCc--------CCcchhhhHHhhHHHHHhh
Q 029008          139 YKINGTANINAIRAASEKGVKRFVYISAAD-FGVANY--------LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       139 ~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~-~~~~~~--------~~~~Y~~sK~~~E~~~~~~  193 (200)
                         +...+.++++++++.+++++|++|+.. ++....        ....|...|...|+++++.
T Consensus        74 ---~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  134 (183)
T PF13460_consen   74 ---DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYARDKREAEEALRES  134 (183)
T ss_dssp             ---HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHHHHHHHHHHHHHS
T ss_pred             ---cccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHHHHHHHHHHHHhc
Confidence               267778899999999999999999953 332221        1236889999999999875

...

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=1.2e-19  Score=143.64  Aligned_cols=140  Identities=19%  Similarity=0.132  Sum_probs=106.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      ..+|+++||||+|+||.+++++|+++|++|+++.++.+.........++.++.+|++|+++++++++       ++|++|
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3568999999999999999999999999999887764432221112257899999999999888765       579999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccCcCCcCCcchhhhHHhhHHHHH
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~-~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ||+|...          .++..+++|+.+++.+.+.+    ++.+.++||++||. .++.+.+....|+.+|++.+.+++
T Consensus        85 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~  164 (255)
T PRK06463         85 NNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAAEGTTFYAITKAGIIILTR  164 (255)
T ss_pred             ECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCCCCccHhHHHHHHHHHHHH
Confidence            9998632          23456899999977665554    44556799999994 344444556789999999999988


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       165 ~l  166 (255)
T PRK06463        165 RL  166 (255)
T ss_pred             HH
Confidence            74

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.82  E-value=1.8e-19  Score=142.77  Aligned_cols=139  Identities=17%  Similarity=0.138  Sum_probs=107.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+++...+     .....++.++++|++|++.++++++       ++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999998643211     1113457889999999998887765       38


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHH----HHHHHH-HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANI----NAIRAA-SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~----~~~~~a-~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |+||||+|...          .++..+++|+.+++    .+++.+ ++.+.++||++||.......++...|+.+|++.+
T Consensus        86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a~~  165 (262)
T PRK13394         86 DILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLL  165 (262)
T ss_pred             CEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCCCCcccHHHHHHHH
Confidence            99999999642          12345779999955    455555 5666789999999543344456678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       166 ~~~~~l  171 (262)
T PRK13394        166 GLARVL  171 (262)
T ss_pred             HHHHHH
Confidence            988764

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.6e-19  Score=141.82  Aligned_cols=138  Identities=17%  Similarity=0.131  Sum_probs=106.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-----------CCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----------GVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----------~~d~  124 (200)
                      |++++||||+|+||.+++++|+++|++|++++|+...........++.++++|+.|.+++++++.           .+|+
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVL   80 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceE
Confidence            46899999999999999999999999999999976543222223468899999999998887432           4789


Q ss_pred             EEEccccCCC-----------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||+|....           +...+++|+.++..+.+.+.    +.+.++||++||.....+.++...|+.+|.++|.+
T Consensus        81 ~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~  160 (243)
T PRK07023         81 LINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYAGWSVYCATKAALDHH  160 (243)
T ss_pred             EEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCCCchHHHHHHHHHHHH
Confidence            9999986421           24567899999777666554    34457999999964344556678899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++.+
T Consensus       161 ~~~~  164 (243)
T PRK07023        161 ARAV  164 (243)
T ss_pred             HHHH
Confidence            9854

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.5e-19  Score=146.24  Aligned_cols=139  Identities=17%  Similarity=0.169  Sum_probs=107.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+++++||||+|+||.+++++|+++|++|++++|+.+...+   .  .....+.++.+|++|++++.++++       ++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            56899999999999999999999999999999998643211   0  112457899999999999888776       68


Q ss_pred             CEEEEccccCCC------------CcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccc-cCcCCcCCcchhhhHHh
Q 029008          123 TAVISCVGGFGS------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAAD-FGVANYLLQGYYEGKDS  185 (200)
Q Consensus       123 d~vi~~ag~~~~------------~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~-~~~~~~~~~~Y~~sK~~  185 (200)
                      |++|||||....            ++..+++|+.+...+++++    ++.+.++||++||.. +..+.+....|+++|++
T Consensus       119 d~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p~~~~Y~asKaa  198 (293)
T PRK05866        119 DILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASPLFSVYNASKAA  198 (293)
T ss_pred             CEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCCcchHHHHHHH
Confidence            999999985321            1346789999988877765    356677999999953 33234556789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+++..
T Consensus       199 l~~l~~~l  206 (293)
T PRK05866        199 LSAVSRVI  206 (293)
T ss_pred             HHHHHHHH
Confidence            99988763

>PLN02253 xanthoxin dehydrogenase

Probab=99.82  E-value=3.3e-19  Score=142.92  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c-cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~-~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+   . ....++.++++|++|+++++++++       ++
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i   95 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL   95 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            357899999999999999999999999999999987543111   1 112468899999999999988776       58


Q ss_pred             CEEEEccccCCC------------CcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          123 TAVISCVGGFGS------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       123 d~vi~~ag~~~~------------~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      |+||||||....            ++..+++|+.+++++++++.+    .+.+++|++||.....+.+....|+.+|+++
T Consensus        96 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~  175 (280)
T PLN02253         96 DIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGPHAYTGSKHAV  175 (280)
T ss_pred             CEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCCCcccHHHHHHH
Confidence            999999986421            245789999999998887753    3446899999854323334456899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+++..
T Consensus       176 ~~~~~~l  182 (280)
T PLN02253        176 LGLTRSV  182 (280)
T ss_pred             HHHHHHH
Confidence            9999864

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.82  E-value=1.3e-19  Score=143.33  Aligned_cols=124  Identities=24%  Similarity=0.265  Sum_probs=105.5

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC--
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG--  133 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~--  133 (200)
                      +|||||++|.+|..|++.|. .+++|+.++|..                +|++|++.+.++++  ++|+|||+|+...  
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~----------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD   64 (281)
T COG1091           2 KILITGANGQLGTELRRALP-GEFEVIATDRAE----------------LDITDPDAVLEVIRETRPDVVINAAAYTAVD   64 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc----------------ccccChHHHHHHHHhhCCCEEEECccccccc
Confidence            49999999999999999998 678999988863                69999999999998  4799999999753  


Q ss_pred             ----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccC----------cCCcCCcchhhhHHhhHHHHHhhccCcc
Q 029008          134 ----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFG----------VANYLLQGYYEGKDSNLSPLLACYSLCC  198 (200)
Q Consensus       134 ----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~----------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~  198 (200)
                          .++..|.+|..++.+++++|.+.|. .+||+|| .+++          ....|.+.||+||+++|..++++.+.+.
T Consensus        65 ~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~~~~~~  143 (281)
T COG1091          65 KAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAVRAAGPRHL  143 (281)
T ss_pred             cccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHHHHHHHHhCCCEE
Confidence                3466789999999999999999987 8999998 3321          1246778999999999999999877665


Q ss_pred             c
Q 029008          199 L  199 (200)
Q Consensus       199 ~  199 (200)
                      |
T Consensus       144 I  144 (281)
T COG1091         144 I  144 (281)
T ss_pred             E
Confidence            4

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.6e-19  Score=140.87  Aligned_cols=139  Identities=19%  Similarity=0.178  Sum_probs=107.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|++++.++++       +
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            45799999999999999999999999999999887543111      0112467889999999999887765       5


Q ss_pred             CCEEEEccccCC----CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEecccc---C--cCCcCCcchhhhHHhhHHHH
Q 029008          122 VTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADF---G--VANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       122 ~d~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~---~--~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|++|||+|...    .+...+++|+.++.++++++.+..  .++||++||...   +  .+.+....|+.+|+++|.++
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~~~~Y~~sK~a~e~~~  164 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPTVKTMPEYEPVARSKRAGEDAL  164 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCccccCCccccHHHHHHHHHHHHH
Confidence            899999998532    345678999999999999997642  358999998421   1  11122468999999999999


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       165 ~~l  167 (248)
T PRK07806        165 RAL  167 (248)
T ss_pred             HHH
Confidence            875

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.82  E-value=1.7e-19  Score=144.99  Aligned_cols=119  Identities=25%  Similarity=0.336  Sum_probs=100.2

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCC--CEEEEccccCC--
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGV--TAVISCVGGFG--  133 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d~vi~~ag~~~--  133 (200)
                      +|+||||+|++|++++++|+++|++|++++|.                .+|+.|++.+.++++++  |+|||++|...  
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~----------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~   64 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS----------------QLDLTDPEALERLLRAIRPDAVVNTAAYTDVD   64 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc----------------ccCCCCHHHHHHHHHhCCCCEEEECCcccccc
Confidence            58999999999999999999999999999885                46999999999999865  99999998643  


Q ss_pred             ----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhHHHHHhh
Q 029008          134 ----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                          .+...+++|+.++.++++++++.+. +||++|| ..|+..          ..+.+.|+.+|.++|++++.+
T Consensus        65 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y~~~K~~~E~~~~~~  138 (287)
T TIGR01214        65 GAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAIRAA  138 (287)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHh
Confidence                2234678999999999999988875 8999998 445432          124578999999999999875

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.82  E-value=7.6e-20  Score=148.56  Aligned_cols=129  Identities=19%  Similarity=0.223  Sum_probs=95.3

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHH----HHHHhc-----CCCEEEEcc
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS----WKEALD-----GVTAVISCV  129 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~----~~~~~~-----~~d~vi~~a  129 (200)
                      |+||||+||||++|+++|++.|++++++.|+......     ...+..+|+.|..+    +++++.     ++|+|||+|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-----FVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-----HHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            7999999999999999999999987777665433111     01223456655432    333432     689999999


Q ss_pred             ccCC----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhHHHHHhh
Q 029008          130 GGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       130 g~~~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...    +....+++|+.++.+++++|++.++ +||++|| ..|+..          ..|.+.|+.+|.++|++++.+
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  154 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQI  154 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            8532    2234688999999999999999887 6999999 456643          135578999999999998875

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.3e-19  Score=143.70  Aligned_cols=138  Identities=15%  Similarity=0.077  Sum_probs=106.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc-CCCCeeEEEccCCCHHHHHHHhcC-------CCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALDG-------VTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~~-------~d~  124 (200)
                      +++++||||+|+||.+++++|+++|++|++++|+.+...+   .. ...++.++.+|++|++++.++++.       +|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            5799999999999999999999999999999997543211   01 112688999999999999887653       799


Q ss_pred             EEEccccCCC-----------CcccchhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFGS-----------NSYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~----~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||+|....           ++..+++|+.++..+++    .+++.+.++||++||...-.+.+....|+.+|++.+.+
T Consensus        82 lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  161 (257)
T PRK07024         82 VIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGAGAYSASKAAAIKY  161 (257)
T ss_pred             EEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCCcchHHHHHHHHHH
Confidence            9999986421           23467899999988766    45556678999999953333345567899999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++..
T Consensus       162 ~~~l  165 (257)
T PRK07024        162 LESL  165 (257)
T ss_pred             HHHH
Confidence            8763

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.81  E-value=2.3e-19  Score=141.85  Aligned_cols=138  Identities=12%  Similarity=0.091  Sum_probs=106.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-CCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-GVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~~  128 (200)
                      |+++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|++++.+++. ++|+||||
T Consensus         1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            35789999999999999999999999999999997543111     1112368899999999999998887 79999999


Q ss_pred             cccCC----------CCcccchhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          129 VGGFG----------SNSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       129 ag~~~----------~~~~~~~~n~~~~~~~~~~----a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      +|...          .++..+++|+.++..+.+.    +.+.+.++||++||.......+....|+.+|.++|.+++.
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~Y~~sK~a~~~~~~~  158 (257)
T PRK09291         81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPFTGAYCASKHALEAIAEA  158 (257)
T ss_pred             CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCCCcchhHHHHHHHHHHHHH
Confidence            98542          1234678898888766554    4455678999999953323334567899999999988765

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.81  E-value=3e-19  Score=142.05  Aligned_cols=140  Identities=15%  Similarity=0.065  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|++++.++++       +
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999997543111     1113468899999999999887665       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH-----cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE-----KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~-----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|+|||+||...          .+...+++|+.++.++.+++.+     .+.++||++||.....+..+...|+.+|+++
T Consensus        88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~a~  167 (263)
T PRK07814         88 LDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRGFAAYGTAKAAL  167 (263)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCCCchhHHHHHHH
Confidence            899999998532          2345679999999999999864     4567899999954344556678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       168 ~~~~~~~  174 (263)
T PRK07814        168 AHYTRLA  174 (263)
T ss_pred             HHHHHHH
Confidence            9988864

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.81  E-value=2.1e-19  Score=140.59  Aligned_cols=139  Identities=15%  Similarity=0.127  Sum_probs=107.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~  127 (200)
                      ++|+++||||+|+||.+++++|+++|++|++++|+.+...+.....++.++.+|+.|+++++++++       ++|++||
T Consensus         1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            467999999999999999999999999999999986542221112347889999999988877654       4899999


Q ss_pred             ccccCC----------CCcccchhhHHHHHHHHHHHHH----cC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          128 CVGGFG----------SNSYMYKINGTANINAIRAASE----KG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       128 ~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |+|...          .++..+++|+.+++.+.+.+.+    .+  .+++|++||.....+.+....|+.+|+++|.+++
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~asKaal~~l~~  160 (236)
T PRK06483         81 NASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDKHIAYAASKAALDNMTL  160 (236)
T ss_pred             CCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCCCccHHHHHHHHHHHHH
Confidence            998532          2345678999999877666643    33  4589999986444445566789999999999998


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      .+
T Consensus       161 ~~  162 (236)
T PRK06483        161 SF  162 (236)
T ss_pred             HH
Confidence            74

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.81  E-value=2.7e-19  Score=141.51  Aligned_cols=140  Identities=13%  Similarity=0.084  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.++...     .....++.++.+|++|+++++++++       .
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999987543211     0112358889999999999988775       4


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+||||+|...          .++..+++|+.++.++++++.+.    +.++||++||.....+.++...|+.+|.++|
T Consensus        88 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~~sK~a~~  167 (255)
T PRK07523         88 IDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPGIAPYTATKGAVG  167 (255)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCCCCccHHHHHHHHH
Confidence            799999998642          12456789999999998888643    5679999999543445566789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       168 ~~~~~~  173 (255)
T PRK07523        168 NLTKGM  173 (255)
T ss_pred             HHHHHH
Confidence            998864

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.81  E-value=2.7e-19  Score=143.17  Aligned_cols=139  Identities=14%  Similarity=0.038  Sum_probs=108.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ++++++||||+|+||++++++|+++|++|++++|+.+....  ......+.++++|++|++++.++++       ++|++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV   81 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            35789999999999999999999999999999997644211  1123468889999999998877654       57999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |||+|...          .++..+++|+.++..+++.+    ++.+.+++|++||.....+.+....|+.+|++.+.+++
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~~~~~  161 (275)
T PRK08263         82 VNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPMSGIYHASKWALEGMSE  161 (275)
T ss_pred             EECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCCCccHHHHHHHHHHHHHH
Confidence            99999642          23456889999998887775    45667899999995433344556789999999998876


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       162 ~l  163 (275)
T PRK08263        162 AL  163 (275)
T ss_pred             HH
Confidence            53

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=3.2e-19  Score=140.92  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=107.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .|+++||||+|+||.+++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       .+
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI   81 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999999987543111      0113468999999999998877665       57


Q ss_pred             CEEEEccccCC------------CCcccchhhHHHHHHHHHHHHHc-----C-----CCEEEEEeccccCcCCcCCcchh
Q 029008          123 TAVISCVGGFG------------SNSYMYKINGTANINAIRAASEK-----G-----VKRFVYISAADFGVANYLLQGYY  180 (200)
Q Consensus       123 d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~~-----~-----~~~~v~vSS~~~~~~~~~~~~Y~  180 (200)
                      |++|||+|...            .++..+++|+.++.++++++.+.     +     .++||++||.....+..+...|+
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~  161 (256)
T PRK12745         82 DCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNRGEYC  161 (256)
T ss_pred             CEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCCCcccH
Confidence            99999998632            12345789999999998887432     1     45799999954334455678999


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .+|+++|.+++.+
T Consensus       162 ~sK~a~~~~~~~l  174 (256)
T PRK12745        162 ISKAGLSMAAQLF  174 (256)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988875

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=1.7e-19  Score=142.13  Aligned_cols=139  Identities=19%  Similarity=0.188  Sum_probs=108.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhcC--------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDG--------VT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~--------~d  123 (200)
                      ++|+++||||+|+||+++++.|+++|++|+++.++.....+   .....++.++.+|+.|++++.++++.        +|
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id   83 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPIT   83 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCe
Confidence            45799999999999999999999999999887664332111   11124688999999999988877753        89


Q ss_pred             EEEEccccCC----------------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          124 AVISCVGGFG----------------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       124 ~vi~~ag~~~----------------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                      ++|||+|...                .+...+++|+.++.++++++.    +.+.++||++||..+..+..+...|+.+|
T Consensus        84 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~Y~~sK  163 (253)
T PRK08642         84 TVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPVVPYHDYTTAK  163 (253)
T ss_pred             EEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCccchHHHH
Confidence            9999998521                113458999999999998885    34557999999965444555678999999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++.|.+++..
T Consensus       164 ~a~~~l~~~l  173 (253)
T PRK08642        164 AALLGLTRNL  173 (253)
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.81  E-value=2.5e-19  Score=142.05  Aligned_cols=140  Identities=18%  Similarity=0.083  Sum_probs=110.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc----CCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS----WANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~----~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+   ..    ...++.++.+|++|+++++++++      
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999997543211   00    13468899999999998888775      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                       ++|++|||||...          +++..+++|+.+++.+.+++.    +.+.++||++||.....+.+....|+.+|++
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa  164 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHG  164 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCCCchHHHHHHHH
Confidence             5899999999532          234568899999998888864    3455689999996433444556789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+++..
T Consensus       165 ~~~~~~~l  172 (260)
T PRK07063        165 LLGLTRAL  172 (260)
T ss_pred             HHHHHHHH
Confidence            99998864

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.81  E-value=5.9e-19  Score=139.47  Aligned_cols=139  Identities=12%  Similarity=0.099  Sum_probs=108.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.++..+     .....++.++.+|++|+++++++++       .+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999998654211     1112468889999999998887765       58


Q ss_pred             CEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccCcCCcCCcchhhhHHhh
Q 029008          123 TAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       123 d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~-~~~~~~~~~~~Y~~sK~~~  186 (200)
                      |++|||||...           .++..+++|+.+.+.+.+++    ++.+.++||++||. .+..+.+....|+.||+++
T Consensus        85 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~  164 (254)
T PRK07478         85 DIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGFPGMAAYAASKAGL  164 (254)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCCCCcchhHHHHHHH
Confidence            99999999632           12456899999888776654    44556789999994 3334456678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       165 ~~~~~~l  171 (254)
T PRK07478        165 IGLTQVL  171 (254)
T ss_pred             HHHHHHH
Confidence            9988864

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.81  E-value=8.5e-19  Score=138.97  Aligned_cols=136  Identities=17%  Similarity=0.208  Sum_probs=106.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+....    ...++.++.+|++|++.++++++       ++|+||
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   82 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD----LPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILV   82 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh----cCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4578999999999999999999999999999999975442    13468899999999988876553       579999


Q ss_pred             EccccCC------------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcC-CcCCcchhhhHHhhHHH
Q 029008          127 SCVGGFG------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVA-NYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       127 ~~ag~~~------------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~-~~~~~~Y~~sK~~~E~~  189 (200)
                      ||||...            .++..+++|+.+++.+.+++    ++.+.++||++||.....+ ..+...|+.+|++++.+
T Consensus        83 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~~Y~~sK~a~~~l  162 (260)
T PRK06523         83 HVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPESTTAYAAAKAALSTY  162 (260)
T ss_pred             ECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCCcchhHHHHHHHHHH
Confidence            9998531            23456789999998776655    4455678999999532223 23578899999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++..
T Consensus       163 ~~~~  166 (260)
T PRK06523        163 SKSL  166 (260)
T ss_pred             HHHH
Confidence            8864

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.81  E-value=3.9e-19  Score=138.75  Aligned_cols=144  Identities=19%  Similarity=0.230  Sum_probs=123.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .+..+-|.|||||+|++++++|.+.|-+|++-.|..+....+    ....++-++..|+.|+++++++++..++|||..|
T Consensus        60 sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINLIG  139 (391)
T KOG2865|consen   60 SGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINLIG  139 (391)
T ss_pred             cceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEeec
Confidence            456789999999999999999999999999999976653222    2246899999999999999999999999999998


Q ss_pred             cC--CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhhccCcccC
Q 029008          131 GF--GSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCLM  200 (200)
Q Consensus       131 ~~--~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~  200 (200)
                      --  ...-.+.++|+.++..+++.|++.|+.+||++|+.  |..-...+-|-.+|+++|..++++||+.+||
T Consensus       140 rd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~L--ganv~s~Sr~LrsK~~gE~aVrdafPeAtIi  209 (391)
T KOG2865|consen  140 RDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCL--GANVKSPSRMLRSKAAGEEAVRDAFPEATII  209 (391)
T ss_pred             cccccCCcccccccchHHHHHHHHHHhhChhheeehhhc--cccccChHHHHHhhhhhHHHHHhhCCcceee
Confidence            42  13345789999999999999999999999999996  3445566789999999999999999999886

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.81  E-value=3.3e-19  Score=142.39  Aligned_cols=138  Identities=14%  Similarity=0.093  Sum_probs=106.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.+...+. ....++.++.+|++|+++++++++       ++|++|
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            467999999999999999999999999999999876442111 111257889999999998776654       579999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||+|...          .+...+++|+.++..+.+.+    .+.+.++||++||.....+.+....|+.+|++.+.+.+.
T Consensus        84 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~  163 (273)
T PRK07825         84 NNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPGMATYCASKHAVVGFTDA  163 (273)
T ss_pred             ECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCCCCcchHHHHHHHHHHHHH
Confidence            9999642          12446789999988876665    456677999999964444556678899999998877665

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.80  E-value=2.5e-19  Score=142.07  Aligned_cols=138  Identities=16%  Similarity=0.097  Sum_probs=108.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc--------CCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD--------GVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~--------~~d~  124 (200)
                      ||+++||||+|+||.+++++|+++|++|++++|+.+...+   .....++.++.+|++|.+++.++++        .+|+
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            5789999999999999999999999999999987654211   1113478999999999998887654        4699


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      ||||||...          .++..+++|+.++..+++++.    +.+.++||++||.....+......|+.+|++++.++
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~  160 (260)
T PRK08267         81 LFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPGLAVYSATKFAVRGLT  160 (260)
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCCchhhHHHHHHHHHHH
Confidence            999999642          124568999999999888774    345679999999532233445678999999999888


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       161 ~~l  163 (260)
T PRK08267        161 EAL  163 (260)
T ss_pred             HHH
Confidence            764

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.80  E-value=1.1e-18  Score=142.06  Aligned_cols=136  Identities=26%  Similarity=0.396  Sum_probs=107.6

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc----CCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS----WANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~  131 (200)
                      +|+||||+|+||.+++++|+++|++|++++|.........    ...+++++.+|+.|++.+.++++  ++|+||||+|.
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~   80 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL   80 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence            5899999999999999999999999998866433211110    01157789999999999999886  69999999986


Q ss_pred             CC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhh
Q 029008          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ..      .+...++.|+.++.+++++|.+.++++||++|| ..|+...          .+...|+.+|.++|.+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y~~sK~~~e~~~~~~  159 (328)
T TIGR01179        81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERILRDL  159 (328)
T ss_pred             cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccCCCCCCCchHHHHHHHHHHHHHH
Confidence            42      234567899999999999999998899999998 3454321          24578999999999988864

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.80  E-value=1.5e-18  Score=137.19  Aligned_cols=141  Identities=21%  Similarity=0.237  Sum_probs=106.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCC-HHHHHHHh-cCCCEEEEcc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLS-SDSWKEAL-DGVTAVISCV  129 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d-~~~~~~~~-~~~d~vi~~a  129 (200)
                      ...+++|+||||+|++|+.++++|+++|++|+++.|+.++.... ....+++++.+|++| .+.+.+.+ .++|+||+++
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~   93 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT   93 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence            34578999999999999999999999999999999986542211 112368999999998 46777777 6899999999


Q ss_pred             ccCC--CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC-c-CC---------cchhhhHHhhHHHHHhh
Q 029008          130 GGFG--SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN-Y-LL---------QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       130 g~~~--~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~-~-~~---------~~Y~~sK~~~E~~~~~~  193 (200)
                      |...  .....+++|..++.++++++++.++++||++||. .|+... . ..         ..|..+|...|+++++.
T Consensus        94 g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~  171 (251)
T PLN00141         94 GFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRKS  171 (251)
T ss_pred             CCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHhc
Confidence            8642  2233467899999999999999999999999994 454321 1 11         12334688888887764

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.80  E-value=4.5e-19  Score=140.23  Aligned_cols=140  Identities=11%  Similarity=0.123  Sum_probs=108.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ..+|+++||||+++||.+++++|+++|++|++++|+......   .....++.++.+|++|+++++++++       ++|
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            357899999999999999999999999999998886432111   1123468899999999999988775       489


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||||...          .++..+++|+.+++.+.+++.+    .+ .++||++||...-.+......|+.+|++.+.
T Consensus        86 ~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asK~a~~~  165 (251)
T PRK12481         86 ILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASKSAVMG  165 (251)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCCCcchHHHHHHHHH
Confidence            9999999532          3456789999999988887643    33 3689999995322334456789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       166 l~~~l  170 (251)
T PRK12481        166 LTRAL  170 (251)
T ss_pred             HHHHH
Confidence            98863

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.5e-18  Score=138.80  Aligned_cols=139  Identities=13%  Similarity=0.112  Sum_probs=109.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------------ccCCCCeeEEEccCCCHHHHHHHhc--
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------------DSWANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.+....            .....++.++.+|++|++++.++++  
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999987643110            0113468899999999999888765  


Q ss_pred             -----CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCC--cCCcch
Q 029008          121 -----GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVAN--YLLQGY  179 (200)
Q Consensus       121 -----~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~--~~~~~Y  179 (200)
                           ++|++|||+|...          .++..+++|+.++.++++++..    .+..++|++||.....+.  ++...|
T Consensus        85 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~Y  164 (273)
T PRK08278         85 VERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPKWFAPHTAY  164 (273)
T ss_pred             HHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccccccCCcchh
Confidence                 5899999999632          1245678999999999998854    334589999985433333  566899


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|+++|.+++..
T Consensus       165 ~~sK~a~~~~~~~l  178 (273)
T PRK08278        165 TMAKYGMSLCTLGL  178 (273)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.80  E-value=5.3e-19  Score=140.78  Aligned_cols=140  Identities=14%  Similarity=0.066  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------~  121 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++      +
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            357899999999999999999999999999999997543211      1113468899999999999988775      4


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||+|...          .++..+++|+.+.+.+.+++    ++.+.++||++||.....+.+....|+.+|++.+
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~~~~y~asKaal~  165 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPNIALSNVVRISMA  165 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCcchhhHHHHHHHH
Confidence            899999998532          24567899988887766655    4455679999999644444455678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       166 ~l~~~l  171 (263)
T PRK08339        166 GLVRTL  171 (263)
T ss_pred             HHHHHH
Confidence            988864

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.80  E-value=5.7e-19  Score=139.35  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=99.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..++++++||||+|+||.+++++|+++|++|++++|+..............++.+|++|.+++.+.+.++|++|||||..
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            34678999999999999999999999999999999876222111111223678899999999999999999999999863


Q ss_pred             C-------CCcccchhhHHHHHHHHHHHHHc-------CCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          133 G-------SNSYMYKINGTANINAIRAASEK-------GVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       133 ~-------~~~~~~~~n~~~~~~~~~~a~~~-------~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      .       +++..+++|+.++..+++++.+.       +.+.++..||.. +........|++||++++.+
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a-~~~~~~~~~Y~aSKaal~~~  160 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEA-EIQPALSPSYEISKRLIGQL  160 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEeccc-ccCCCCCchhHHHHHHHHHH
Confidence            2       34567899999999999887442       122343444422 22223456799999998643

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.80  E-value=6.5e-19  Score=139.13  Aligned_cols=139  Identities=15%  Similarity=0.120  Sum_probs=107.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+++++||||+|++|.+++++|+++|++|++++|+.+....     .....++.++.+|++|++++.++++       ++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999999999999999998654211     1113478899999999999888776       58


Q ss_pred             CEEEEccccCCC----------CcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |+||||+|....          ++..+++|+.+++.+++.+    ++.+.++||++||.....+..+.+.|+.+|++.+.
T Consensus        83 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~~k~a~~~  162 (258)
T PRK12429         83 DILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAGKAAYVSAKHGLIG  162 (258)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCcchhHHHHHHHHH
Confidence            999999985421          2345678989866555554    45677899999995433455667899999999998


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       163 ~~~~l  167 (258)
T PRK12429        163 LTKVV  167 (258)
T ss_pred             HHHHH
Confidence            88753

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.80  E-value=8.7e-19  Score=137.50  Aligned_cols=140  Identities=14%  Similarity=0.129  Sum_probs=111.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++++++||||+|+||++++++|+++|++|+++.|+.+....      .....++.++.+|++|+++++++++       
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999888776432111      1123568899999999999888776       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|++|||+|...          .++..+++|+.++.++++++.+.  ..++||++||..+..+.++...|+.+|.+++.
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~  162 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLPGYGPYAASKAAVEG  162 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCCCCchhHHHHHHHHH
Confidence            5899999999642          22456789999999999888654  23589999996666666777899999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       163 ~~~~~  167 (245)
T PRK12937        163 LVHVL  167 (245)
T ss_pred             HHHHH
Confidence            88864

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.80  E-value=7.4e-19  Score=137.99  Aligned_cols=137  Identities=15%  Similarity=0.087  Sum_probs=108.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhcC----CCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALDG----VTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~----~d~vi~~ag  130 (200)
                      +++++||||+|+||.+++++|+++|++|++++|+.+...+. ....++.++.+|++|++++++++++    +|.+|||+|
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag   80 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG   80 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence            46899999999999999999999999999999975442211 1124688999999999999998875    589999998


Q ss_pred             cCC----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          131 GFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       131 ~~~----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ...          .++..+++|+.++.++++++...  +.+++|++||.....+.+....|+.+|++++.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~  154 (240)
T PRK06101         81 DCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALPRAEAYGASKAAVAYFART  154 (240)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCCCCchhhHHHHHHHHHHHH
Confidence            532          12356899999999999998753  235899999854334445667899999999998875

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.80  E-value=6.7e-19  Score=139.91  Aligned_cols=139  Identities=21%  Similarity=0.214  Sum_probs=107.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      .+++++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|+.|.+++.++++       .+|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            46899999999999999999999999999999987643211  1113468889999999988877664       57999


Q ss_pred             EEccccCC---------------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          126 ISCVGGFG---------------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       126 i~~ag~~~---------------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |||||...               .++..+++|+.+++.+++++.+.   ..+++|++||...-.+......|+.+|++++
T Consensus        84 i~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa~~  163 (262)
T TIGR03325        84 IPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNGGGPLYTAAKHAVV  163 (262)
T ss_pred             EECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCCCCchhHHHHHHHH
Confidence            99998531               13467899999999999888543   2257888888532334445678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       164 ~l~~~l  169 (262)
T TIGR03325       164 GLVKEL  169 (262)
T ss_pred             HHHHHH
Confidence            999864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.80  E-value=4.9e-19  Score=139.38  Aligned_cols=139  Identities=14%  Similarity=0.076  Sum_probs=106.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEe-ecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+++++||||+|+||++++++|+++|++|+++ .|+.+...+     .....++.++.+|++|++++.++++       .
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999999998774 555432111     1123468899999999999888776       4


Q ss_pred             CCEEEEccccCCC----------CcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+|||++|....          +...+++|+.+++.+++++.+    .+.++||++||.....+.++...|+.+|+++|
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~y~~sK~a~~  162 (250)
T PRK08063         83 LDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLENYTTVGVSKAALE  162 (250)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCccHHHHHHHHHH
Confidence            7999999985321          123567999999998888764    45569999999643444556779999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       163 ~~~~~~  168 (250)
T PRK08063        163 ALTRYL  168 (250)
T ss_pred             HHHHHH
Confidence            998864

>PRK09135 pteridine reductase; Provisional

Probab=99.80  E-value=5.6e-19  Score=138.71  Aligned_cols=139  Identities=17%  Similarity=0.120  Sum_probs=107.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ++++++||||+|+||++++++|+++|++|++++|+.....+       ......+.++.+|++|.+++..+++       
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45799999999999999999999999999999987433211       1112468899999999999888776       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      ++|+||||+|...          .++..+++|+.++.++++++.+.   ..+.++++++.....+.++...|+.+|+++|
T Consensus        85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~~  164 (249)
T PRK09135         85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERPLKGYPVYCAAKAALE  164 (249)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcCCCCCchhHHHHHHHHH
Confidence            4799999999532          12456789999999999998642   2346777776433445567789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++.+
T Consensus       165 ~~~~~l  170 (249)
T PRK09135        165 MLTRSL  170 (249)
T ss_pred             HHHHHH
Confidence            999874

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.80  E-value=6.7e-19  Score=143.05  Aligned_cols=140  Identities=16%  Similarity=0.100  Sum_probs=105.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------c-cCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~-~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.++..+      . ....++.++.+|++|.++++++++      
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            467899999999999999999999999999999997543211      0 112468899999999998887764      


Q ss_pred             -CCCEEEEccccCC--------CCcccchhhHHHHHH----HHHHHHHcCCCEEEEEeccc-c--Cc----------CCc
Q 029008          121 -GVTAVISCVGGFG--------SNSYMYKINGTANIN----AIRAASEKGVKRFVYISAAD-F--GV----------ANY  174 (200)
Q Consensus       121 -~~d~vi~~ag~~~--------~~~~~~~~n~~~~~~----~~~~a~~~~~~~~v~vSS~~-~--~~----------~~~  174 (200)
                       ++|+||||||...        .++..+++|+.+.+.    +++.+++.+.++||++||.. +  +.          +..
T Consensus        94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~  173 (306)
T PRK06197         94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWERRYN  173 (306)
T ss_pred             CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCcccCCC
Confidence             4899999999532        235568999999554    45555555667999999853 1  21          112


Q ss_pred             CCcchhhhHHhhHHHHHhh
Q 029008          175 LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +...|+.||++.+.+.+..
T Consensus       174 ~~~~Y~~SK~a~~~~~~~l  192 (306)
T PRK06197        174 RVAAYGQSKLANLLFTYEL  192 (306)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            3468999999999988763

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.3e-18  Score=136.69  Aligned_cols=139  Identities=17%  Similarity=0.117  Sum_probs=108.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ++++++||||+|+||++++++|+++|++|++++|...+..+         .....++.++.+|+.|+++++++++     
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE   84 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999998765332111         0113468899999999999888764     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~-----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                        ++|+||||+|...          .+...+++|+.++.++++++.     +.+.++||++||.....+..+...|+.+|
T Consensus        85 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sK  164 (249)
T PRK12827         85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNYAASK  164 (249)
T ss_pred             hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCCCCchhHHHH
Confidence              5899999999643          123467899999999999987     45667999999954333445677899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++.+.+++..
T Consensus       165 ~a~~~~~~~l  174 (249)
T PRK12827        165 AGLIGLTKTL  174 (249)
T ss_pred             HHHHHHHHHH
Confidence            9999888764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.80  E-value=6.4e-19  Score=138.93  Aligned_cols=137  Identities=18%  Similarity=0.110  Sum_probs=106.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~  127 (200)
                      |+++||||+|++|.++++.|+++|++|++++|+.++...  .....++.++.+|+.|.++++++++       ++|+|||
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~   80 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVN   80 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            579999999999999999999999999999998653211  1113468899999999998887664       6899999


Q ss_pred             ccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          128 CVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       128 ~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ++|...           .++..+++|+.++..+++.+    .+.+.++||++||.....+..+...|+.+|.+.|.+.+.
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~~~~~~  160 (248)
T PRK10538         81 NAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN  160 (248)
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCCCCchhHHHHHHHHHHHHH
Confidence            998632           12346789999977666665    455677999999964344455677999999999998876


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       161 l  161 (248)
T PRK10538        161 L  161 (248)
T ss_pred             H
Confidence            4

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.80  E-value=6.3e-19  Score=156.62  Aligned_cols=136  Identities=21%  Similarity=0.173  Sum_probs=107.1

Q ss_pred             CeEEEEccCchhHHHHHHHHH--HCCCcEEEeecCCCCccc----c-cCCCCeeEEEccCCCH------HHHHHHhcCCC
Q 029008           57 EKLLVLGGNGFVGSHICREAL--DRGLTVASLSRSGRSSLR----D-SWANNVIWHQGNLLSS------DSWKEALDGVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~----~-~~~~~~~~~~~Dl~d~------~~~~~~~~~~d  123 (200)
                      |+|+||||+||||++++++|+  +.|++|++++|+......    . ....+++++.+|++|+      +.++++ +++|
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~D   79 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-GDID   79 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-cCCC
Confidence            479999999999999999999  579999999996432110    0 1125789999999984      456665 8999


Q ss_pred             EEEEccccCC---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcC------------CcCCcchhhhHHhhH
Q 029008          124 AVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVA------------NYLLQGYYEGKDSNL  187 (200)
Q Consensus       124 ~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~------------~~~~~~Y~~sK~~~E  187 (200)
                      +||||||...   .+...+++|+.++.+++++|.+.++++||++||. .||..            ..+.+.|+.+|+++|
T Consensus        80 ~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~~~~e~~~~~~~~~~~~Y~~sK~~~E  159 (657)
T PRK07201         80 HVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEGVFREDDFDEGQGLPTPYHRTKFEAE  159 (657)
T ss_pred             EEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccCccccccchhhcCCCCchHHHHHHHH
Confidence            9999999643   3345678999999999999999999999999984 45422            123467999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      +++++.
T Consensus       160 ~~~~~~  165 (657)
T PRK07201        160 KLVREE  165 (657)
T ss_pred             HHHHHc
Confidence            999853

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.80  E-value=4.6e-19  Score=140.31  Aligned_cols=140  Identities=13%  Similarity=0.115  Sum_probs=110.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .++++++||||+|+||.++++.|+++|++|++++|+.+....  .....++.++.+|++|+++++++++       .+|+
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            346799999999999999999999999999999988654211  1113468899999999999887775       5799


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC-----CCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEKG-----VKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~-----~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||+|...          .++..+++|+.++.++++++....     ..+||++||.....+.++...|+.+|++.+.+
T Consensus        84 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~  163 (257)
T PRK07067         84 LFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCATKAAVISY  163 (257)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCCCchhhhhHHHHHHH
Confidence            999998532          234568899999999999885431     24899999954344456778999999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++..
T Consensus       164 ~~~l  167 (257)
T PRK07067        164 TQSA  167 (257)
T ss_pred             HHHH
Confidence            8763

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.80  E-value=6.1e-19  Score=141.38  Aligned_cols=138  Identities=17%  Similarity=0.096  Sum_probs=106.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++|+++||||+|+||++++++|+++|++|++++|+.+...+   .  ....++.++.+|++|++++.++++       .+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            56899999999999999999999999999999987543211   1  112357889999999999988765       47


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |++|||||...          .++..+++|+.++.++++++.    +.+ .++||++||...-.+.++...|+.+|++++
T Consensus        85 d~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~  164 (275)
T PRK05876         85 DVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGVV  164 (275)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCCCCchHHHHHHHHH
Confidence            99999999532          234567999999999888874    344 468999999543345566788999999866


Q ss_pred             HHHHh
Q 029008          188 SPLLA  192 (200)
Q Consensus       188 ~~~~~  192 (200)
                      .+.+.
T Consensus       165 ~~~~~  169 (275)
T PRK05876        165 GLAET  169 (275)
T ss_pred             HHHHH
Confidence            66554

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.80  E-value=1.5e-18  Score=138.07  Aligned_cols=136  Identities=16%  Similarity=0.123  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++++.....    ..++.++.+|++|+++++++++       .+|++|
T Consensus         7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li   82 (266)
T PRK06171          7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ----HENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLV   82 (266)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc----cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            35689999999999999999999999999999998765421    2468889999999998887765       479999


Q ss_pred             EccccCC-------------------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          127 SCVGGFG-------------------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       127 ~~ag~~~-------------------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                      ||||...                   .++..+++|+.+++.+++++.+    .+.++||++||.....+......|+.+|
T Consensus        83 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  162 (266)
T PRK06171         83 NNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSEGQSCYAATK  162 (266)
T ss_pred             ECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCCCchhHHHH
Confidence            9999532                   1134678999999998888754    3446899999964434455678999999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       163 ~a~~~l~~~l  172 (266)
T PRK06171        163 AALNSFTRSW  172 (266)
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>PLN02996 fatty acyl-CoA reductase

Probab=99.80  E-value=7.8e-19  Score=151.00  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=93.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCCccc------c--------------------cCCCCeeE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLR------D--------------------SWANNVIW  104 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~------~--------------------~~~~~~~~  104 (200)
                      ..+++|+|||||||||+++++.|++.+.   +|+++.|.......      .                    ....++++
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            4678999999999999999999998653   68999987643110      0                    00157899


Q ss_pred             EEccCC-------CHHHHHHHhcCCCEEEEccccCC---CCcccchhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCc
Q 029008          105 HQGNLL-------SSDSWKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGV  171 (200)
Q Consensus       105 ~~~Dl~-------d~~~~~~~~~~~d~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS-~~~~~  171 (200)
                      +.+|++       |.+.++.+++++|+|||+|+...   ++...+++|+.|+.+++++|++. ++++||++|| .+||.
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~  167 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGE  167 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecC
Confidence            999998       45557788889999999999654   34557899999999999999886 6889999998 44543

>PRK08264 short chain dehydrogenase; Validated

Probab=99.80  E-value=1.3e-18  Score=136.13  Aligned_cols=137  Identities=22%  Similarity=0.151  Sum_probs=109.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag  130 (200)
                      .+++++||||+|++|.+++++|+++|+ +|++++|+.++..+  ...++.++.+|+.|++.++++++   .+|+|||++|
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag   82 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD--LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAG   82 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh--cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            457999999999999999999999999 99999998655322  33578999999999999988876   4799999999


Q ss_pred             cCC-----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          131 GFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...           .+...+++|+.++..+++++.    +.+.++||++||...-.+..+...|+.+|.+.|.+++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~l  160 (238)
T PRK08264         83 IFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPNLGTYSASKAAAWSLTQAL  160 (238)
T ss_pred             cCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCCCchHhHHHHHHHHHHHHHH
Confidence            721           123457899999999888864    346678999998532234455678999999999888764

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.2e-18  Score=138.04  Aligned_cols=140  Identities=15%  Similarity=0.087  Sum_probs=106.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|+++.++......      .....++.++.+|++|.+++.++++       
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999888765432111      0113468899999999998887765       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      .+|+||||||...          .++..+++|+.+++.+++++...    +.+++|+++|.....+.+....|+.+|+++
T Consensus        87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~~~~Y~~sK~a~  166 (258)
T PRK09134         87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNPDFLSYTLSKAAL  166 (258)
T ss_pred             CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCCCchHHHHHHHHH
Confidence            4799999998632          23456899999999999887653    345888888743223344456899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+.+..
T Consensus       167 ~~~~~~l  173 (258)
T PRK09134        167 WTATRTL  173 (258)
T ss_pred             HHHHHHH
Confidence            9988874

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.80  E-value=5.6e-19  Score=138.72  Aligned_cols=138  Identities=20%  Similarity=0.146  Sum_probs=108.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc----CCCEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD----GVTAV  125 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~v  125 (200)
                      ||+++||||+|+||.+++++|+++|++|++++|+.++...      .....++.++++|++|+++++++++    .+|++
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            5789999999999999999999999999999998654211      0113478999999999999888765    46999


Q ss_pred             EEccccCCC----------CcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ||++|....          +...+++|+.++..+++++..    .+.++||++||.....+.+....|+.+|++++.+++
T Consensus        81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~  160 (243)
T PRK07102         81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRASNYVYGSAKAALTAFLS  160 (243)
T ss_pred             EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCCCCcccHHHHHHHHHHHH
Confidence            999985321          124578999999988887653    466799999996433444556789999999999888


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       161 ~l  162 (243)
T PRK07102        161 GL  162 (243)
T ss_pred             HH
Confidence            64

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.79  E-value=9.2e-19  Score=140.26  Aligned_cols=138  Identities=14%  Similarity=0.101  Sum_probs=107.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------c-cCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~-~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ++++++||||+|++|.++++.|+++|++|++++|+.+....      . ....++.++.+|++|++++++ ++       
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcC
Confidence            35789999999999999999999999999999988653211      0 112468999999999988775 43       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|+||||+|...          .++..+++|+.++.++++.+    ++.+.++||++||.....+.++...|+.+|++.
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~~~  160 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGLSPYVSSKYAL  160 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCCCCchhHHhHHHH
Confidence            5799999998643          12345789999998888775    556678999999854344455678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.++++.
T Consensus       161 ~~~~~~l  167 (280)
T PRK06914        161 EGFSESL  167 (280)
T ss_pred             HHHHHHH
Confidence            9988864

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.79  E-value=7.8e-19  Score=138.32  Aligned_cols=140  Identities=14%  Similarity=0.075  Sum_probs=108.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .++++++||||+|+||.+++++|+++|++|+++.|+.+...+    .....++.++.+|++|+++++++++       ++
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            356899999999999999999999999999999988643211    1113468899999999999888765       68


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |+||||+|...          .++..+++|+.++.++.+.+    ++.+.++||++||.....+......|+.+|++.+.
T Consensus        83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a~~~  162 (252)
T PRK06138         83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGRAAYVASKGAIAS  162 (252)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCCccHHHHHHHHHHH
Confidence            99999999642          12345789999998766655    45567899999995322334556789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       163 ~~~~l  167 (252)
T PRK06138        163 LTRAM  167 (252)
T ss_pred             HHHHH
Confidence            98875

>PRK06128 oxidoreductase; Provisional

Probab=99.79  E-value=4.5e-18  Score=137.91  Aligned_cols=140  Identities=14%  Similarity=0.076  Sum_probs=108.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-c------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-R------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|++..++.+... +      .....++.++.+|++|+++++++++      
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            35689999999999999999999999999988876543211 0      1113467889999999988887764      


Q ss_pred             -CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 -GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 -~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                       ++|++|||||...           .++..+++|+.+++.+++++.+.  ..++||++||...-.+......|+.+|+++
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~asK~a~  212 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYASTKAAI  212 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCCCchhHHHHHHHH
Confidence             5899999999531           23557899999999999998754  235899999954333445567899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       213 ~~~~~~l  219 (300)
T PRK06128        213 VAFTKAL  219 (300)
T ss_pred             HHHHHHH
Confidence            9998864

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.79  E-value=4.6e-19  Score=141.75  Aligned_cols=139  Identities=19%  Similarity=0.240  Sum_probs=108.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc----CCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS----WANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~----~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ++++++|||++|+||.++++.|+++|++|++++|+.+....   ..    ...++.++.+|+.|++++.++++       
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999987543111   00    02468899999999998888776       


Q ss_pred             CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      ++|++|||+|...           .+...+++|+.++..+++++.+    .+.++||++||.....+.++...|+.+|++
T Consensus        86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~a  165 (276)
T PRK05875         86 RLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHRWFGAYGVTKSA  165 (276)
T ss_pred             CCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCCCCcchHHHHHH
Confidence            6899999998532           1234678899999988887654    334589999995444445567889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +|.+++.+
T Consensus       166 ~~~~~~~~  173 (276)
T PRK05875        166 VDHLMKLA  173 (276)
T ss_pred             HHHHHHHH
Confidence            99999864

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.1e-18  Score=138.61  Aligned_cols=139  Identities=14%  Similarity=0.118  Sum_probs=109.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      .+++++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       .+|++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   84 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL   84 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            46899999999999999999999999999999998653211  1113468899999999998887765       47999


Q ss_pred             EEccccCC---------CCcccchhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          126 ISCVGGFG---------SNSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       126 i~~ag~~~---------~~~~~~~~n~~~~~~~~~~a~~---~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |||+|...         .++..+++|+.+++.+.+++..   .+.++||++||.....+.+....|+.+|++++.+++..
T Consensus        85 v~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaa~~~~~~~l  164 (261)
T PRK08265         85 VNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQTGRWLYPASKAAIRQLTRSM  164 (261)
T ss_pred             EECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHHHHHHHHHHHHHH
Confidence            99998532         2345678999999988887654   33468999999543344455678999999999988863

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.79  E-value=9.3e-19  Score=142.18  Aligned_cols=132  Identities=19%  Similarity=0.205  Sum_probs=102.2

Q ss_pred             EEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc----CCCEEEEccccCC
Q 029008           59 LLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISCVGGFG  133 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~vi~~ag~~~  133 (200)
                      |+||||+|+||.++++.|.++|+ +|++++|........  ......+..|+.+.+.++.+.+    ++|+|||+|+...
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~   78 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFL--NLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSD   78 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCchhhh--hhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccC
Confidence            68999999999999999999998 788887654322100  1112456788888888877664    7999999998632


Q ss_pred             ----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhHHHHHhh
Q 029008          134 ----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                          ++...+++|+.++.+++++|.+.++ +||++|| ..|+..          ..+.+.|+.+|..+|++++++
T Consensus        79 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~  152 (314)
T TIGR02197        79 TTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQYVRRR  152 (314)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCCCcccccCcCCCCCHHHHHHHHHHHHHHHH
Confidence                3455778999999999999998887 7999999 456532          125678999999999999863

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.79  E-value=1.2e-18  Score=136.88  Aligned_cols=139  Identities=19%  Similarity=0.126  Sum_probs=109.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++++++||||+|++|.+++++|+++|++|++++|+.++...     .....++.++.+|+.|+++++++++       .+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            56799999999999999999999999999999998543111     1112458899999999999988775       58


Q ss_pred             CEEEEccccCCC----------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccc-cCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD-FGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~-~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |+|||++|....          +...+++|+.++.++++++.    +.+.++||++||.. ++.+.+....|+.+|.+++
T Consensus        85 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~~y~~sK~a~~  164 (251)
T PRK12826         85 DILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYPGLAHYAASKAGLV  164 (251)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCCCccHHHHHHHHHH
Confidence            999999986431          23467889999998888873    45677999999953 3245566778999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       165 ~~~~~~  170 (251)
T PRK12826        165 GFTRAL  170 (251)
T ss_pred             HHHHHH
Confidence            988764

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.79  E-value=7.4e-19  Score=145.09  Aligned_cols=136  Identities=21%  Similarity=0.281  Sum_probs=106.9

Q ss_pred             eEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcc-----c---------c-cCC-CCeeEEEccCCCH------H
Q 029008           58 KLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL-----R---------D-SWA-NNVIWHQGNLLSS------D  113 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-----~---------~-~~~-~~~~~~~~Dl~d~------~  113 (200)
                      +|+|||||||+|.+++++|+++|  ++|+++.|+.+...     .         . ... .+++++.+|++++      +
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58999999999999999999999  67999999865310     0         0 001 4789999999754      5


Q ss_pred             HHHHHhcCCCEEEEccccCC---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC---------------c
Q 029008          114 SWKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN---------------Y  174 (200)
Q Consensus       114 ~~~~~~~~~d~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~---------------~  174 (200)
                      .+..+.+++|+|||||+...   +....+++|+.++.+++++|.+.+.++|+++||. .++...               .
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTPPPG  160 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCccccccccccccc
Confidence            67777889999999999654   3345668999999999999999888899999994 444311               1


Q ss_pred             CCcchhhhHHhhHHHHHhh
Q 029008          175 LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +.++|+.+|+++|++++.+
T Consensus       161 ~~~~Y~~sK~~~E~~~~~~  179 (367)
T TIGR01746       161 LAGGYAQSKWVAELLVREA  179 (367)
T ss_pred             cCCChHHHHHHHHHHHHHH
Confidence            2357999999999998875

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.79  E-value=2e-18  Score=136.05  Aligned_cols=136  Identities=11%  Similarity=0.086  Sum_probs=109.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      ..+|+++||||+|+||..++++|+++|++|++++|+..    .....++.++++|++|+++++++++       .+|++|
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   81 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFL----TQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLV   81 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchh----hhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            34689999999999999999999999999999998761    1224578899999999999988775       379999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||+|...          .+...+++|+.++..+++++.    +.+.++||++||.....+..+...|+.+|++.|.+++.
T Consensus        82 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~  161 (252)
T PRK08220         82 NAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRIGMAAYGASKAALTSLAKC  161 (252)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCCCchhHHHHHHHHHHHHH
Confidence            9999642          224467899999999988874    34556899999964344455678899999999998876


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       162 l  162 (252)
T PRK08220        162 V  162 (252)
T ss_pred             H
Confidence            4

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2.9e-18  Score=135.81  Aligned_cols=138  Identities=20%  Similarity=0.187  Sum_probs=104.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..++++||||+|+||.+++++|+++| ++|++++|+.+...+       .....+++++.+|++|+++++++++      
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            46799999999999999999999995 899999998764111       1112368999999999988665543      


Q ss_pred             CCCEEEEccccCCC----Cc------ccchhhHHHHHH----HHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFGS----NS------YMYKINGTANIN----AIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~~----~~------~~~~~n~~~~~~----~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|++|||+|....    +.      ..+++|+.+++.    +++.+.+.+.++||++||.....+.++...|+.||++.
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~~~~~~Y~~sKaa~  166 (253)
T PRK07904         87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVRRSNFVYGSTKAGL  166 (253)
T ss_pred             CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCCCCCcchHHHHHHH
Confidence            69999999987532    11      247999998886    45566677778999999953323445567899999999


Q ss_pred             HHHHHh
Q 029008          187 LSPLLA  192 (200)
Q Consensus       187 E~~~~~  192 (200)
                      ..+.+.
T Consensus       167 ~~~~~~  172 (253)
T PRK07904        167 DGFYLG  172 (253)
T ss_pred             HHHHHH
Confidence            877665

>PRK08643 acetoin reductase; Validated

Probab=99.79  E-value=9.4e-19  Score=138.41  Aligned_cols=139  Identities=20%  Similarity=0.161  Sum_probs=106.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++|+++||||+|+||.+++++|+++|++|++++|+.+....   .  ....++.++.+|++|++.++++++       ++
T Consensus         1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            36799999999999999999999999999999987543111   1  112467889999999998887765       58


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |++|||+|...          .++..+++|+.++..+++.+.+    .+ ..+||++||.....+.+....|+.+|++.+
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  160 (256)
T PRK08643         81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKFAVR  160 (256)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCCCchhHHHHHHHH
Confidence            99999998632          1244678999998877777643    22 358999998543334455678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       161 ~~~~~l  166 (256)
T PRK08643        161 GLTQTA  166 (256)
T ss_pred             HHHHHH
Confidence            888763

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.4e-18  Score=137.30  Aligned_cols=140  Identities=18%  Similarity=0.104  Sum_probs=109.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--cccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.....  .......+.++.+|++|+++++++++       ++|+
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            45789999999999999999999999999999998754311  11112456789999999998887765       5799


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||+|...          .+...+++|+.++.++++++..    .+.++||++||.....+.+....|+.+|++.+.++
T Consensus        93 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~  172 (255)
T PRK06841         93 LVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERHVAYCASKAGVVGMT  172 (255)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCCCchHHHHHHHHHHHH
Confidence            999999642          1234678999999999888754    35679999999543334455678999999999888


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       173 ~~l  175 (255)
T PRK06841        173 KVL  175 (255)
T ss_pred             HHH
Confidence            864

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.3e-18  Score=139.32  Aligned_cols=140  Identities=14%  Similarity=0.085  Sum_probs=107.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|++++.++++       +
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE   87 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            456799999999999999999999999999999887543111     0112467889999999999987765       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||+|...          .+...+++|+.++.++++.+.    +.+.++||++||.....+.++...|+.+|++.|
T Consensus        88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~  167 (274)
T PRK07775         88 IEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRPHMGAYGAAKAGLE  167 (274)
T ss_pred             CCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCcchHHHHHHHHH
Confidence            799999998642          123446899999999888864    345568999999532233445678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       168 ~l~~~~  173 (274)
T PRK07775        168 AMVTNL  173 (274)
T ss_pred             HHHHHH
Confidence            998864

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.79  E-value=8.5e-19  Score=137.96  Aligned_cols=139  Identities=20%  Similarity=0.202  Sum_probs=108.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|.++++++++       ++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999987643211     1113468899999999998888765       58


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||+|...          .++..+++|+.++.++++++.    +.+.++||++||.....+......|+.+|++.+.
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~~~~Y~~sK~a~~~  161 (250)
T TIGR03206        82 DVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSGEAVYAACKGGLVA  161 (250)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCCCchHHHHHHHHHH
Confidence            99999998532          123468899999998877764    4566799999995433344556789999999998


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       162 ~~~~l  166 (250)
T TIGR03206       162 FSKTM  166 (250)
T ss_pred             HHHHH
Confidence            88864

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.79  E-value=1.3e-18  Score=137.57  Aligned_cols=140  Identities=11%  Similarity=0.065  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+....   .  ....++.++.+|++|+++++++++       .
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999999999987543211   1  112467788999999998887764       4


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||+|...          +++..+++|+.+++.+.+++.+    .+.++||++||.....+.+....|+.+|++++
T Consensus        87 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~  166 (254)
T PRK08085         87 IDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTITPYAASKGAVK  166 (254)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCCCCcchHHHHHHHH
Confidence            799999998532          2345789999999988887754    34578999999543344456779999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .++++.
T Consensus       167 ~~~~~l  172 (254)
T PRK08085        167 MLTRGM  172 (254)
T ss_pred             HHHHHH
Confidence            999874

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.1e-18  Score=137.82  Aligned_cols=139  Identities=18%  Similarity=0.125  Sum_probs=106.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEe-ecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc--------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD--------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~--------  120 (200)
                      ++++++||||+|+||.+++++|+++|++|+++ .|+.++...     .....++.++.+|++|++++.++++        
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   84 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI   84 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence            45799999999999999999999999999775 454322110     1112468899999999999887765        


Q ss_pred             -----CCCEEEEccccCCC----------CcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 -----GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 -----~~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                           ++|++|||+|....          +...+++|+.++.++++++.+.  ..++||++||.....+.++...|+.+|
T Consensus        85 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~Y~~sK  164 (254)
T PRK12746         85 RVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFTGSIAYGLSK  164 (254)
T ss_pred             ccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCCCCcchHhhH
Confidence                 48999999986421          1345679999999999988653  345899999854334556678899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++.|.+++..
T Consensus       165 ~a~~~~~~~~  174 (254)
T PRK12746        165 GALNTMTLPL  174 (254)
T ss_pred             HHHHHHHHHH
Confidence            9999987753

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.79  E-value=4.1e-19  Score=139.33  Aligned_cols=140  Identities=15%  Similarity=0.099  Sum_probs=108.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag  130 (200)
                      ..+++++|||++|++|.++++.|+++|++|++++|+.+...+.....++.++.+|++|.+.+.++++   ++|+|||++|
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag   86 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG   86 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence            3568999999999999999999999999999999976442211112246788999999998888876   4899999998


Q ss_pred             cCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          131 GFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...          +++..+++|+.++.++++++.+.    + .++||++||.....+......|+.+|.++|.+++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~~  164 (245)
T PRK07060         87 IASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDHLAYCASKAALDAITRVL  164 (245)
T ss_pred             CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCCCcHhHHHHHHHHHHHHHH
Confidence            642          22445679999999998887543    2 368999999543334456678999999999988764

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.5e-18  Score=136.64  Aligned_cols=137  Identities=17%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+......   .  ....++.++.+|++|.++++++++       .
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG   83 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            356899999999999999999999999999999997543111   0  112367789999999998887665       5


Q ss_pred             CCEEEEccccCC-------------CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG-------------SNSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~-------------~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      +|+||||+|...             .+...+++|+.++.++++++.+.    +.++||++||...   ..+.+.|+.+|+
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~---~~~~~~Y~~sK~  160 (250)
T PRK07774         84 IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAA---WLYSNFYGLAKV  160 (250)
T ss_pred             CCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccc---cCCccccHHHHH
Confidence            799999999642             12345789999999988887643    4569999999421   234578999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +.|.+++..
T Consensus       161 a~~~~~~~l  169 (250)
T PRK07774        161 GLNGLTQQL  169 (250)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.79  E-value=1.3e-18  Score=138.33  Aligned_cols=139  Identities=16%  Similarity=0.184  Sum_probs=107.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.+....  .....++.++.+|++|+++++++++       .+|++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   84 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF   84 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            56899999999999999999999999999999997543211  1113467889999999988887764       58999


Q ss_pred             EEccccCCC---------------CcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          126 ISCVGGFGS---------------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       126 i~~ag~~~~---------------~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |||+|....               ++..+++|+.+++.+++++.+.   ..+++|++||...-.+......|+.+|++++
T Consensus        85 i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  164 (263)
T PRK06200         85 VGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGGGPLYTASKHAVV  164 (263)
T ss_pred             EECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCCchhHHHHHHHH
Confidence            999996321               3346789999999888887542   2358999998543334455678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       165 ~~~~~l  170 (263)
T PRK06200        165 GLVRQL  170 (263)
T ss_pred             HHHHHH
Confidence            998864

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1e-18  Score=139.67  Aligned_cols=137  Identities=15%  Similarity=0.068  Sum_probs=105.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~~  128 (200)
                      ||+++||||+|+||.+++++|+++|++|++++|+.+.... ....++.++.+|++|.+.++++++       ++|+||||
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~   79 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEA-LAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINN   79 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            4789999999999999999999999999999987643211 112357889999999988887664       58999999


Q ss_pred             cccCC----------CCcccchhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          129 VGGFG----------SNSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       129 ag~~~----------~~~~~~~~n~~~~~~~~~~a~~---~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +|...          .++..+++|+.++..+++++..   .+.+++|++||...-.+.+....|+.+|.+.+.+.+..
T Consensus        80 ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~al~~~~~~l  157 (274)
T PRK05693         80 AGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDAL  157 (274)
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCCCccHHHHHHHHHHHHHHHH
Confidence            99532          2245678999999988888743   24468999998543334455678999999999987753

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2e-18  Score=135.86  Aligned_cols=138  Identities=21%  Similarity=0.131  Sum_probs=105.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------cc-CCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~-~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      +++++||||+|+||.+++++|+++|++|++++|+.++..+      .. ...++.++.+|++|++++.++++       +
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999998643211      11 13468899999999988877664       5


Q ss_pred             CCEEEEccccCCC----------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCC-cCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVAN-YLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~-~~~~~Y~~sK~~~  186 (200)
                      +|++|||+|....          +...+++|+.+...+++++.    +.+.++||++||.....+. .+...|+.+|+++
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~  161 (248)
T PRK08251         82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPGVKAAYAASKAGV  161 (248)
T ss_pred             CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCcccHHHHHHHH
Confidence            8999999986432          13457899999988887763    4567799999994322222 2357899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       162 ~~~~~~l  168 (248)
T PRK08251        162 ASLGEGL  168 (248)
T ss_pred             HHHHHHH
Confidence            9888754

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.79  E-value=1e-18  Score=137.41  Aligned_cols=139  Identities=16%  Similarity=0.114  Sum_probs=109.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      .+++++||||+|++|.+++++|+++|++|++++|+..+....    ....++.++.+|+.|+++++.+++       .+|
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            467999999999999999999999999999999986542110    012458899999999999988765       479


Q ss_pred             EEEEccccCC-----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      +|||++|...           .++..+++|+.++..+++.+.    +.+.++||++||.....+.++...|+.+|.+.+.
T Consensus        84 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sk~~~~~  163 (251)
T PRK07231         84 ILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPGLGWYNASKGAVIT  163 (251)
T ss_pred             EEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCCCchHHHHHHHHHHH
Confidence            9999998632           123467899999888777765    3566799999995434455667889999999998


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       164 ~~~~~  168 (251)
T PRK07231        164 LTKAL  168 (251)
T ss_pred             HHHHH
Confidence            88764

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.5e-18  Score=137.10  Aligned_cols=139  Identities=18%  Similarity=0.095  Sum_probs=104.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc--------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD--------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~--------  120 (200)
                      ++|+++||||+|+||.+++++|+++|++|++..++.....+      ......+..+.+|++|.+++..+++        
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            46899999999999999999999999999887543222111      1112456788999999877664332        


Q ss_pred             -----CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 -----GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 -----~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                           ++|++|||||...          .++..+++|+.+++.+++++.+..  .++||++||.....+.+....|+.||
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  162 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMTK  162 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCCCchhHHHHH
Confidence                 5899999999532          135567899999999998876542  35999999964444455667899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       163 aa~~~~~~~l  172 (252)
T PRK12747        163 GAINTMTFTL  172 (252)
T ss_pred             HHHHHHHHHH
Confidence            9999988864

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.79  E-value=1.2e-18  Score=138.05  Aligned_cols=139  Identities=16%  Similarity=0.163  Sum_probs=106.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c---cC-CCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D---SW-ANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~---~~-~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      |+++++||||+|+||.+++++|+++|++|++++|+......   .   .. ..++.++.+|++|.+++.++++       
T Consensus         1 m~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          1 MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            35789999999999999999999999999999987543211   0   01 1468899999999988887664       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      .+|++|||+|...          .++..+++|+.++..+++++.+    .+ ..+||++||.....+......|+.+|++
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sKaa  160 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG  160 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCCCchhHHHHHH
Confidence            5799999998532          2345678999999877777643    44 3589999985323334456789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      .+.+++..
T Consensus       161 ~~~l~~~l  168 (259)
T PRK12384        161 GVGLTQSL  168 (259)
T ss_pred             HHHHHHHH
Confidence            99888764

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.79  E-value=1.7e-18  Score=136.21  Aligned_cols=139  Identities=15%  Similarity=0.116  Sum_probs=107.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc------cCCCCeeEEEccCCCHHHHHHHhcC-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALDG-------  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~-------  121 (200)
                      .+++++||||+|+||.+++++|+++|++|+++.++.....+.      ....++.++.+|++|++.+.++++.       
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGK   84 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999999999999999998766543221111      1124688999999999998887764       


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+||||+|...          .++..+++|+.++..+++++..    .+.++||++||.....+..+...|+.+|++.+
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  164 (247)
T PRK12935         85 VDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTNYSAAKAGML  164 (247)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCCCCcchHHHHHHHH
Confidence            799999999643          2244678999999998888864    34569999999533334456789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       165 ~~~~~l  170 (247)
T PRK12935        165 GFTKSL  170 (247)
T ss_pred             HHHHHH
Confidence            887764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.79  E-value=1.3e-18  Score=137.88  Aligned_cols=140  Identities=14%  Similarity=0.179  Sum_probs=108.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++++++||||+|+||.++++.|+++|++|++++|+.++...     .....++.++.+|++|+++++++++       .
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            356899999999999999999999999999999987543111     1113467889999999999876554       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc-----CCCEEEEEeccc--cCcCC--cCCcchhhh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK-----GVKRFVYISAAD--FGVAN--YLLQGYYEG  182 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~-----~~~~~v~vSS~~--~~~~~--~~~~~Y~~s  182 (200)
                      +|+||||+|...          .+...+++|+.++.++++++.+.     +.++||++||..  ++.+.  .+...|+.+
T Consensus        90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~~~~~~~Y~~s  169 (259)
T PRK08213         90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEVMDTIAYNTS  169 (259)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCccccCcchHHHH
Confidence            899999998532          12346789999999999987554     567999999842  23222  245789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++.|.+++++
T Consensus       170 Ka~~~~~~~~~  180 (259)
T PRK08213        170 KGAVINFTRAL  180 (259)
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.79  E-value=7.7e-19  Score=142.19  Aligned_cols=119  Identities=23%  Similarity=0.222  Sum_probs=96.7

Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC----
Q 029008           60 LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG----  133 (200)
Q Consensus        60 lVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~----  133 (200)
                      |||||+||||.+|++.|+++|++|+++.+.               ..+|++|.++++++++  ++|+|||+|+...    
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~---------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~   65 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH---------------KELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHA   65 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc---------------ccCCCCCHHHHHHHHhccCCCEEEEeeeeecccch
Confidence            699999999999999999999988766432               1479999999999887  4799999998532    


Q ss_pred             ---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC--------------CcCCc-chhhhHHhhHHHHHhh
Q 029008          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA--------------NYLLQ-GYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~--------------~~~~~-~Y~~sK~~~E~~~~~~  193 (200)
                         .+...+++|+.++.+++++|++.++++||++|| ..|+..              ..|.+ .|+.+|.++|++++.+
T Consensus        66 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~  144 (306)
T PLN02725         66 NMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAY  144 (306)
T ss_pred             hhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Confidence               334568899999999999999999999999998 456532              11223 4999999999988754

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.79  E-value=2e-18  Score=135.88  Aligned_cols=140  Identities=15%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+......   .....++.++.+|++|++++..+++       ++|
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            357899999999999999999999999999999986532111   1123468899999999999886654       589


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||+|...          .++..+++|+.+...+++++.+    .+ .+++|++||...-.+......|+.+|++.+.
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~  162 (248)
T TIGR01832        83 ILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIRVPSYTASKHGVAG  162 (248)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCCCCchhHHHHHHHHH
Confidence            9999998642          2345678999999998888753    33 4689999994322233456789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       163 ~~~~l  167 (248)
T TIGR01832       163 LTKLL  167 (248)
T ss_pred             HHHHH
Confidence            88864

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.79  E-value=3e-18  Score=135.68  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=109.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+....    .....++.++.+|++|++++.++++       ++
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            456899999999999999999999999999999987654210    1123468899999999999888775       57


Q ss_pred             CEEEEccccCC---------CCcccchhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          123 TAVISCVGGFG---------SNSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       123 d~vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a~~---~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      |+||||+|...         .++..+++|+.+...+.+.+.+   .+.++||++||...-.+..+...|+.+|+++|.++
T Consensus        85 d~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~  164 (258)
T PRK08628         85 DGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQGGTSGYAAAKGAQLALT  164 (258)
T ss_pred             CEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCCCCchhHHHHHHHHHHH
Confidence            99999999532         1345678999999988887753   23468999999543344556789999999999999


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       165 ~~l  167 (258)
T PRK08628        165 REW  167 (258)
T ss_pred             HHH
Confidence            864

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.79  E-value=1.2e-18  Score=136.59  Aligned_cols=139  Identities=17%  Similarity=0.109  Sum_probs=108.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++++++||||+|++|.+++++|+++|++|+++.|+.....+      .....++.++.+|+.|++++.++++       +
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   84 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGR   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999999999887776543211      1123568899999999999888764       5


Q ss_pred             CCEEEEccccCCC----------CcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+|||++|....          +...+++|+.+..++++.+    ++.+.++||++||.....+......|+.+|.+.+
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~y~~sK~~~~  164 (249)
T PRK12825         85 IDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGRSNYAAAKAGLV  164 (249)
T ss_pred             CCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCCchHHHHHHHHHH
Confidence            7999999995321          2345788999999888887    4567789999999543334455678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       165 ~~~~~~  170 (249)
T PRK12825        165 GLTKAL  170 (249)
T ss_pred             HHHHHH
Confidence            888653

>PRK08589 short chain dehydrogenase; Validated

Probab=99.79  E-value=2e-18  Score=137.98  Aligned_cols=137  Identities=11%  Similarity=0.079  Sum_probs=106.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+|+++||||+|+||.+++++|+++|++|++++|+ +...+   .  ....++.++.+|++|+++++++++       .+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            56899999999999999999999999999999998 32111   1  113468899999999988887665       47


Q ss_pred             CEEEEccccCC-----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |++|||||...           .++..+++|+.+.+.+.+++.    +.+ ++||++||...-.+.+....|+.+|++++
T Consensus        84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  162 (272)
T PRK08589         84 DVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAADLYRSGYNAAKGAVI  162 (272)
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCCCCCchHHHHHHHHH
Confidence            99999998642           123467889999987777753    334 69999999543344456688999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       163 ~l~~~l  168 (272)
T PRK08589        163 NFTKSI  168 (272)
T ss_pred             HHHHHH
Confidence            998874

>PRK12743 oxidoreductase; Provisional

Probab=99.79  E-value=1.7e-18  Score=137.12  Aligned_cols=139  Identities=13%  Similarity=0.099  Sum_probs=108.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++++++||||+|+||.+++++|+++|++|+++.++.....+      .....++.++.+|++|+++++++++       .
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999999988765433111      1123478899999999998877665       4


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||+|...          .+...+++|+.+...+++++.+.    + .++||++||.....+..+...|+.+|+++
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~  160 (256)
T PRK12743         81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGASAYTAAKHAL  160 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCCcchhHHHHHHH
Confidence            799999998642          22456789999999999887543    2 35899999965445556678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.++++.
T Consensus       161 ~~l~~~l  167 (256)
T PRK12743        161 GGLTKAM  167 (256)
T ss_pred             HHHHHHH
Confidence            9998764

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.78  E-value=2.9e-18  Score=134.26  Aligned_cols=139  Identities=15%  Similarity=0.167  Sum_probs=109.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+++++|||++|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|++++.++++       ++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            45799999999999999999999999999999998643211     1113468899999999999888775       68


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |+|||++|...          .+...+++|+.++.++.+++.    +.+.+++|++||.....+..+...|+.+|.+.+.
T Consensus        86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~  165 (239)
T PRK07666         86 DILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVTSAYSASKFGVLG  165 (239)
T ss_pred             cEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCCCCcchHHHHHHHHH
Confidence            99999998632          123467999999998888775    4456789999996444445566789999999998


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++.+
T Consensus       166 ~~~~~  170 (239)
T PRK07666        166 LTESL  170 (239)
T ss_pred             HHHHH
Confidence            88754

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.78  E-value=2.8e-18  Score=137.38  Aligned_cols=140  Identities=15%  Similarity=0.192  Sum_probs=107.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||++++++|+++|++|++++|+.+....   .  ....++.++++|+.|++++..+++       +
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999999999999997543111   0  112468899999999988887664       6


Q ss_pred             CCEEEEccccCC-------------------------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcC
Q 029008          122 VTAVISCVGGFG-------------------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVA  172 (200)
Q Consensus       122 ~d~vi~~ag~~~-------------------------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~  172 (200)
                      +|++|||+|...                         .++..+++|+.+++.+.+++    .+.+.++||++||.....+
T Consensus        88 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~  167 (278)
T PRK08277         88 CDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFTP  167 (278)
T ss_pred             CCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcCC
Confidence            899999998532                         12345788999988666554    3445678999999543344


Q ss_pred             CcCCcchhhhHHhhHHHHHhh
Q 029008          173 NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .++...|+.+|++++.+++..
T Consensus       168 ~~~~~~Y~~sK~a~~~l~~~l  188 (278)
T PRK08277        168 LTKVPAYSAAKAAISNFTQWL  188 (278)
T ss_pred             CCCCchhHHHHHHHHHHHHHH
Confidence            556778999999999998864

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.8e-18  Score=136.06  Aligned_cols=139  Identities=17%  Similarity=0.078  Sum_probs=106.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ++++++||||+|+||++++++|+++|++|++++|+.+...+  .....++.++.+|++|.+++..+++       ++|++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            46899999999999999999999999999999987543111  1123467889999999887766543       58999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |||+|...          .++..+++|+.++.++++++.+.  ...++|++||.....+.+....|+.+|++.|.+++..
T Consensus        85 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~~~~~Y~~sK~a~~~~~~~l  164 (249)
T PRK06500         85 FINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMPNSSVYAASKAALLSLAKTL  164 (249)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCCCccHHHHHHHHHHHHHHHH
Confidence            99998532          22456899999999999999752  2357888887432233455679999999999999653

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.78  E-value=2.3e-18  Score=134.76  Aligned_cols=139  Identities=16%  Similarity=0.108  Sum_probs=108.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++++++||||+|++|.+++++|+++|++|++++|+..+...     .....++.++.+|+.|++++.++++       .+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            35799999999999999999999999999999998654211     1123468899999999998887765       36


Q ss_pred             CEEEEccccCCC----------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |+|||++|....          +...+++|+.+..++++++.    +.+.++||++||.....+..+...|+.+|.+.|.
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~~~~  163 (246)
T PRK05653         84 DILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPGQTNYSAAKAGVIG  163 (246)
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCCCCcHhHhHHHHHHH
Confidence            999999986431          23457889999998888874    4567899999995433345566789999999988


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       164 ~~~~l  168 (246)
T PRK05653        164 FTKAL  168 (246)
T ss_pred             HHHHH
Confidence            87764

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.78  E-value=2.4e-18  Score=136.11  Aligned_cols=140  Identities=13%  Similarity=0.137  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|.+++.++++       +
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999887543211     1113467889999999998887654       4


Q ss_pred             CCEEEEccccCC---------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          122 VTAVISCVGGFG---------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       122 ~d~vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      +|++|||+|...         .++..+++|+.+++++++++.    +.+.++||++||.....+..+...|+.+|++.+.
T Consensus        89 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~  168 (255)
T PRK06113         89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASH  168 (255)
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCcchhHHHHHHHHH
Confidence            799999999632         123457899999999999885    3344699999996544555667889999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       169 ~~~~l  173 (255)
T PRK06113        169 LVRNM  173 (255)
T ss_pred             HHHHH
Confidence            99874

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.4e-18  Score=136.16  Aligned_cols=138  Identities=14%  Similarity=0.069  Sum_probs=107.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++|+++||||+|++|..++++|+++|++|++++|+.++..+     .....++.++.+|++|++++.++++       ++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP   84 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            56899999999999999999999999999999997643211     1112468899999999998887765       48


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||+|...          .++..+++|+.+++++++.+    .+.+.++||++||.....+..+...|+.+|++.+.
T Consensus        85 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~~  164 (241)
T PRK07454         85 DVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQWGAYCVSKAALAA  164 (241)
T ss_pred             CEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCCCccHHHHHHHHHHH
Confidence            99999999632          22456789999998877776    34456789999995433344556789999999998


Q ss_pred             HHHh
Q 029008          189 PLLA  192 (200)
Q Consensus       189 ~~~~  192 (200)
                      +++.
T Consensus       165 ~~~~  168 (241)
T PRK07454        165 FTKC  168 (241)
T ss_pred             HHHH
Confidence            8875

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.78  E-value=2.1e-18  Score=136.67  Aligned_cols=137  Identities=16%  Similarity=0.108  Sum_probs=103.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--cc--cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RD--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.....  ..  ....++.++.+|++|.+++.++++       ++
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            35689999999999999999999999999999998742110  00  113467889999999988877665       58


Q ss_pred             CEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccc-cCcCCcCCcchhhhHHhh
Q 029008          123 TAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAAD-FGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       123 d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~-~~~~~~~~~~Y~~sK~~~  186 (200)
                      |++|||||...           .+...+++|+.++..+++.+    ++.+.++||++||.. ++   .+..+|+.+|++.
T Consensus        86 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~---~~~~~Y~~sK~a~  162 (260)
T PRK12823         86 DVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRG---INRVPYSAAKGGV  162 (260)
T ss_pred             eEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccC---CCCCccHHHHHHH
Confidence            99999998421           12345688988887655554    455667999999953 32   2456899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       163 ~~~~~~l  169 (260)
T PRK12823        163 NALTASL  169 (260)
T ss_pred             HHHHHHH
Confidence            9998864

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.78  E-value=2.8e-18  Score=140.41  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=104.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.++..+   .  ....++.++.+|++|.++++++++       ++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            57899999999999999999999999999999987543211   1  112468899999999999888775       38


Q ss_pred             CEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----cC--CCEEEEEeccc--c----Cc--------
Q 029008          123 TAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KG--VKRFVYISAAD--F----GV--------  171 (200)
Q Consensus       123 d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~~--~~~~v~vSS~~--~----~~--------  171 (200)
                      |+||||||...           .++..+++|+.+++++++++.+    .+  .++||++||..  +    +.        
T Consensus        85 D~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~~~  164 (322)
T PRK07453         85 DALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPAD  164 (322)
T ss_pred             cEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCccc
Confidence            99999999532           1245689999999988887753    22  35999999842  1    11        


Q ss_pred             ---------------------CCcCCcchhhhHHhhHHHHHhh
Q 029008          172 ---------------------ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 ---------------------~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                           +..+...|+.||.+.+.+.+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~l  207 (322)
T PRK07453        165 LGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMREL  207 (322)
T ss_pred             hhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHH
Confidence                                 0123467999999887766653

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.78  E-value=3.1e-18  Score=135.12  Aligned_cols=140  Identities=13%  Similarity=0.026  Sum_probs=108.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+....   .  ....++.++.+|+.|.++++++++       .
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGR   85 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            456899999999999999999999999999999987543111   0  112357889999999998887665       4


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++||++|...           .++..+++|+.++..+++++    ++.+.+++|++||.....+.++...|+.+|++.
T Consensus        86 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~al  165 (252)
T PRK07035         86 LDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDFQGIYSITKAAV  165 (252)
T ss_pred             CCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCCCCcchHHHHHHH
Confidence            899999998531           12356889999998877776    444567999999854344556678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+++..
T Consensus       166 ~~~~~~l  172 (252)
T PRK07035        166 ISMTKAF  172 (252)
T ss_pred             HHHHHHH
Confidence            9998874

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.3e-18  Score=137.58  Aligned_cols=139  Identities=12%  Similarity=0.074  Sum_probs=109.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-----cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-----SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++|+++||||+|+||++++++|+++|++|++++|+.......     ....++.++.+|++|+++++++++       ++
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV   83 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence            468999999999999999999999999999999876432110     112467899999999998887664       57


Q ss_pred             CEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||+|...           .++..+++|+.++..+++++.+.   ..++||++||.....+.++...|+.+|.+.+.
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a~~~  163 (258)
T PRK07890         84 DALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQPKYGAYKMAKGALLA  163 (258)
T ss_pred             cEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCCCcchhHHHHHHHHH
Confidence            99999998632           12456789999999999998643   23589999996434445567889999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       164 l~~~~  168 (258)
T PRK07890        164 ASQSL  168 (258)
T ss_pred             HHHHH
Confidence            88864

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.78  E-value=2.8e-18  Score=135.98  Aligned_cols=140  Identities=14%  Similarity=0.146  Sum_probs=108.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc-cc---ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-LR---DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ..+++++||||+|+||.+++++|+++|++|+++.|+.... ..   .....++.++.+|++|.++++++++       .+
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999999999999873211 10   1113468899999999999888776       57


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||+|...          .++..+++|+.+...+.+++.    +.+.+++|++||.....+.+....|+.+|++++.
T Consensus        93 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~  172 (258)
T PRK06935         93 DILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVPAYTASKHGVAG  172 (258)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCCchhhHHHHHHHHH
Confidence            99999999632          234567899999887776664    4456799999995433344556789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       173 ~~~~l  177 (258)
T PRK06935        173 LTKAF  177 (258)
T ss_pred             HHHHH
Confidence            98874

>PRK09242 tropinone reductase; Provisional

Probab=99.78  E-value=2.9e-18  Score=135.73  Aligned_cols=141  Identities=17%  Similarity=0.146  Sum_probs=110.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccC-CCCeeEEEccCCCHHHHHHHhc-----
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSW-ANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~-~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ...+|+++||||+|+||.++++.|+++|++|++++|+.+...+      ... ..++.++.+|++|+++++++++     
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH   85 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999987643111      011 2468889999999988776654     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                        ++|+||||+|...          +++..+++|+.++..+++++.    +.+.++||++||.....+......|+.+|.
T Consensus        86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~  165 (257)
T PRK09242         86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRSGAPYGMTKA  165 (257)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCCCCcchHHHHH
Confidence              5799999998632          234568999999999888874    345679999999543345566788999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +.+.+++..
T Consensus       166 a~~~~~~~l  174 (257)
T PRK09242        166 ALLQMTRNL  174 (257)
T ss_pred             HHHHHHHHH
Confidence            999988863

>PRK06196 oxidoreductase; Provisional

Probab=99.78  E-value=1.4e-18  Score=141.86  Aligned_cols=140  Identities=15%  Similarity=0.092  Sum_probs=105.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+...+.. ...++.++.+|++|.++++++++       ++|+|
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l  103 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDIL  103 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            35689999999999999999999999999999999865421110 11247899999999999887664       58999


Q ss_pred             EEccccCC--------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCc------------CCcCCcchhh
Q 029008          126 ISCVGGFG--------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGV------------ANYLLQGYYE  181 (200)
Q Consensus       126 i~~ag~~~--------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~------------~~~~~~~Y~~  181 (200)
                      |||||...        .++..+++|+.++..+.+.+    ++.+.++||++||.....            +..+...|+.
T Consensus       104 i~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~Y~~  183 (315)
T PRK06196        104 INNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYDKWLAYGQ  183 (315)
T ss_pred             EECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCChHHHHHH
Confidence            99999642        23556889999987766654    445557999999853111            1123457999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      ||++.+.+.+..
T Consensus       184 SK~a~~~~~~~l  195 (315)
T PRK06196        184 SKTANALFAVHL  195 (315)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887653

>PRK07985 oxidoreductase; Provisional

Probab=99.78  E-value=7.5e-18  Score=136.32  Aligned_cols=140  Identities=16%  Similarity=0.072  Sum_probs=107.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc-cc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-LR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|+++.|+.... .+      .....++.++.+|++|++++.++++      
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3568999999999999999999999999999887654321 11      1113467889999999988877654      


Q ss_pred             -CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 -GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 -~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                       ++|++|||||...           +++..+++|+.++..+++++.+.  ..++||++||...-.+.+....|+.+|+++
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~~~~~Y~asKaal  206 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAI  206 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCCCcchhHHHHHHH
Confidence             4799999998531           23567899999999999988653  225899999954333445567899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       207 ~~l~~~l  213 (294)
T PRK07985        207 LNYSRGL  213 (294)
T ss_pred             HHHHHHH
Confidence            9988764

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.78  E-value=3.6e-18  Score=135.92  Aligned_cols=140  Identities=11%  Similarity=0.046  Sum_probs=109.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       .
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV   87 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            456899999999999999999999999999999887643211     0113468899999999999888775       4


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||+|...          .+...+++|+.+...+.+.+.    +.+.++||++||.....+.++...|+.+|++++
T Consensus        88 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaal~  167 (265)
T PRK07097         88 IDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLK  167 (265)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCccHHHHHHHHH
Confidence            899999999643          124467899999987777764    345679999999543344556788999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       168 ~l~~~l  173 (265)
T PRK07097        168 MLTKNI  173 (265)
T ss_pred             HHHHHH
Confidence            999874

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.78  E-value=3e-18  Score=135.58  Aligned_cols=140  Identities=17%  Similarity=0.155  Sum_probs=107.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+....      .....++.++.+|++|+++++++++       
T Consensus         6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   85 (254)
T PRK06114          6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG   85 (254)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999999987543211      1113467889999999998887765       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccc--cCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD--FGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~--~~~~~~~~~~Y~~sK~  184 (200)
                      ++|++|||+|...          .++..+++|+.+++.+++++.    +.+.++||++||..  .+.+......|+.+|+
T Consensus        86 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sKa  165 (254)
T PRK06114         86 ALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGLLQAHYNASKA  165 (254)
T ss_pred             CCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCCcchHHHHHH
Confidence            4799999999642          234568899999988777653    44557999999843  2233334678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +.+.+++..
T Consensus       166 a~~~l~~~l  174 (254)
T PRK06114        166 GVIHLSKSL  174 (254)
T ss_pred             HHHHHHHHH
Confidence            999988864

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.78  E-value=2.2e-18  Score=135.89  Aligned_cols=138  Identities=19%  Similarity=0.186  Sum_probs=105.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHh-------cCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEAL-------DGVT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~-------~~~d  123 (200)
                      +++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|+.|++++.+++       .++|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            4689999999999999999999999999999998543211     011346889999999999666544       4589


Q ss_pred             EEEEccccCCC----------CcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||++|....          ++..+++|+.++..+++.+    ++.+.++||++||.....+.+....|+.+|.+.|.+
T Consensus        81 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~~~~y~~sk~a~~~~  160 (255)
T TIGR01963        81 ILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPFKSAYVAAKHGLIGL  160 (255)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCCCchhHHHHHHHHHH
Confidence            99999986431          1345678999988887776    456778999999853223445567899999999988


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++..
T Consensus       161 ~~~~  164 (255)
T TIGR01963       161 TKVL  164 (255)
T ss_pred             HHHH
Confidence            8753

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.78  E-value=2.7e-18  Score=136.97  Aligned_cols=137  Identities=11%  Similarity=0.122  Sum_probs=106.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      |+++||||+|+||.+++++|+++|++|++++|+.++...     .....++.++.+|+.|++++.++++       ++|+
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            479999999999999999999999999999987654211     1123468889999999998887765       5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~----a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      ||||+|...          .++..+++|+.++..+.+.    +++.+.++||++||.....+.+....|+.+|++.+.+.
T Consensus        81 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~~~~  160 (270)
T PRK05650         81 IVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVALS  160 (270)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCCCchHHHHHHHHHHHHH
Confidence            999999642          1234578998888876665    45566789999999543445566789999999988877


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       161 ~~l  163 (270)
T PRK05650        161 ETL  163 (270)
T ss_pred             HHH
Confidence            653

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.78  E-value=2e-18  Score=140.79  Aligned_cols=140  Identities=14%  Similarity=0.066  Sum_probs=106.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccC-CCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSW-ANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~-~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++++++||||+++||.+++++|+++|++|++++|+.++..+      ... ..++.++.+|+.|.++++++++      
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            457899999999999999999999999999999998653211      111 2368899999999999887764      


Q ss_pred             -CCCEEEEccccCC---------CCcccchhhHHHHHHHHHHHHH---cCCCEEEEEeccc--cCc----------CCcC
Q 029008          121 -GVTAVISCVGGFG---------SNSYMYKINGTANINAIRAASE---KGVKRFVYISAAD--FGV----------ANYL  175 (200)
Q Consensus       121 -~~d~vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a~~---~~~~~~v~vSS~~--~~~----------~~~~  175 (200)
                       .+|++|||||...         .++..+++|+.+.+.+.+.+..   .+..+||++||..  ++.          +..+
T Consensus        92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~~~~~~  171 (313)
T PRK05854         92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWERSYAG  171 (313)
T ss_pred             CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccccccCcc
Confidence             4899999999643         2244689999999888777642   2346899999853  221          1134


Q ss_pred             CcchhhhHHhhHHHHHhh
Q 029008          176 LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       176 ~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...|+.||++.+.+.++.
T Consensus       172 ~~~Y~~SK~a~~~~~~~l  189 (313)
T PRK05854        172 MRAYSQSKIAVGLFALEL  189 (313)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            568999999999988754

>PRK12742 oxidoreductase; Provisional

Probab=99.78  E-value=1.9e-18  Score=134.96  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=106.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHHHhc---CCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag  130 (200)
                      ++++++||||+|+||.+++++|+++|++|+++.++.....+.. ...++.++.+|++|.+.+.+.++   .+|++|||+|
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag   84 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAG   84 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCC
Confidence            5689999999999999999999999999988776433211111 11246788899999988887665   4899999998


Q ss_pred             cCC----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEecccc-CcCCcCCcchhhhHHhhHHHHHhh
Q 029008          131 GFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADF-GVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~-~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...          +++..+++|+.+++.+++.+.+.  ..+++|++||... ..+.++...|+.+|+++|.+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sKaa~~~~~~~l  160 (237)
T PRK12742         85 IAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRMPVAGMAAYAASKSALQGMARGL  160 (237)
T ss_pred             CCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccCCCCCCcchHHhHHHHHHHHHHH
Confidence            632          23567899999999887776554  2458999999533 234566789999999999988863

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.78  E-value=3.7e-18  Score=133.80  Aligned_cols=138  Identities=21%  Similarity=0.205  Sum_probs=106.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      +++++|||++|+||.++++.|+++|++|++++|+......      .....++.++.+|+.|.+++.++++       .+
T Consensus         2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   81 (245)
T PRK12824          2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV   81 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999999988532111      0112468899999999998887765       48


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++||++|...          .++..+++|+.++.++.+++    ++.+.++||++||.....+.+....|..+|++.+.
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~Y~~sK~a~~~  161 (245)
T PRK12824         82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMIG  161 (245)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCCCChHHHHHHHHHHH
Confidence            99999998642          22456789999998875544    55567799999995433445566789999999998


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       162 ~~~~l  166 (245)
T PRK12824        162 FTKAL  166 (245)
T ss_pred             HHHHH
Confidence            88764

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.78  E-value=3.2e-18  Score=140.54  Aligned_cols=140  Identities=14%  Similarity=0.088  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999999999999998654211     1113467889999999999988764       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||...          .++..+++|+.+++++.+++    ++.+..+||++||...-.+.+....|+.+|++++
T Consensus        85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~~~~Y~asKaal~  164 (330)
T PRK06139         85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPYAAAYSASKFGLR  164 (330)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCCCchhHHHHHHHHH
Confidence            899999998532          12346899999999877775    4455678999998543334455678999999988


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       165 ~~~~sL  170 (330)
T PRK06139        165 GFSEAL  170 (330)
T ss_pred             HHHHHH
Confidence            777753

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1e-17  Score=135.30  Aligned_cols=141  Identities=12%  Similarity=0.062  Sum_probs=109.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..++|+++||||+|+||.+++++|+++|++|++++|+.....+      .....++.++.+|++|.+.++++++      
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3457899999999999999999999999999999887543111      1112467899999999998887765      


Q ss_pred             -CCCEEEEccccCCC-----------CcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 -~~d~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                       ++|+||||||....           +...+++|+.++.++++++.+.  ..++||++||.....+.+....|+.+|+++
T Consensus       123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~~sK~a~  202 (290)
T PRK06701        123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNETLIDYSATKGAI  202 (290)
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCCcchhHHHHHHH
Confidence             57999999996321           2346889999999999998653  235899999954333344567899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       203 ~~l~~~l  209 (290)
T PRK06701        203 HAFTRSL  209 (290)
T ss_pred             HHHHHHH
Confidence            9988864

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.7e-18  Score=134.68  Aligned_cols=133  Identities=10%  Similarity=-0.002  Sum_probs=103.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc----CCCEEEEccccC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISCVGGF  132 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~vi~~ag~~  132 (200)
                      ++++||||+|+||+++++.|+++|++|++++|+.++........++.++.+|++|+++++++++    .+|++|||+|..
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~   80 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS   80 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence            3799999999999999999999999999999875442111111246789999999999988775    589999998731


Q ss_pred             ---------------CCCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          133 ---------------GSNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ---------------~~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                     ..++..+++|+.+++.+++++.+.  ..++||++||..    .+....|+.+|++++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~----~~~~~~Y~asKaal~~~~~~l  154 (223)
T PRK05884         81 WDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN----PPAGSAEAAIKAALSNWTAGQ  154 (223)
T ss_pred             ccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC----CCCccccHHHHHHHHHHHHHH
Confidence                           123456799999999999887543  235899999853    234578999999999998863

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.77  E-value=4e-18  Score=140.25  Aligned_cols=139  Identities=12%  Similarity=0.053  Sum_probs=106.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       .
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            456899999999999999999999999999999997543211     1113468899999999999987764       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||+|...          .++..+++|+.+...+.+.+    ++.+.++||++||.....+.+....|+.+|++++
T Consensus        86 iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asK~a~~  165 (334)
T PRK07109         86 IDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPLQSAYCAAKHAIR  165 (334)
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCCcchHHHHHHHHHH
Confidence            899999999532          12456788988877655554    4555679999999543334455678999999999


Q ss_pred             HHHHh
Q 029008          188 SPLLA  192 (200)
Q Consensus       188 ~~~~~  192 (200)
                      .+.+.
T Consensus       166 ~~~~~  170 (334)
T PRK07109        166 GFTDS  170 (334)
T ss_pred             HHHHH
Confidence            88775

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.77  E-value=3.2e-18  Score=135.46  Aligned_cols=138  Identities=14%  Similarity=0.096  Sum_probs=103.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+..............++.+|++|+++++++++       ++|++|
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   84 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF   84 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4578999999999999999999999999999999875432111111123678999999999888775       579999


Q ss_pred             EccccCCC------------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccc--cCcCCcCCcchhhhHHhhHH
Q 029008          127 SCVGGFGS------------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD--FGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       127 ~~ag~~~~------------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~--~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ||+|....            ++..+++|+.++..+++.+.    +.+.+++|++||..  ++. ..+...|+.+|++.+.
T Consensus        85 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~-~~~~~~Y~~sKaal~~  163 (255)
T PRK06057         85 NNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS-ATSQISYTASKGGVLA  163 (255)
T ss_pred             ECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC-CCCCcchHHHHHHHHH
Confidence            99986421            24567899999987777653    44566899999842  322 2345689999998888


Q ss_pred             HHHh
Q 029008          189 PLLA  192 (200)
Q Consensus       189 ~~~~  192 (200)
                      +++.
T Consensus       164 ~~~~  167 (255)
T PRK06057        164 MSRE  167 (255)
T ss_pred             HHHH
Confidence            7775

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.77  E-value=2.8e-18  Score=134.89  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=108.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+++++||||+|+||++++++|+++|++|++++|+.++...     .....++.++.+|++|+++++++++       ++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999887543111     1112468999999999999887774       58


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |+||||+|...          .++..+++|+.++.++++++.+    .+.++||++||.....+.+....|+.+|++.|.
T Consensus        86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sK~~~~~  165 (250)
T PRK12939         86 DGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKLGAYVASKGAVIG  165 (250)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCCCcchHHHHHHHHHH
Confidence            99999999643          1234577999999998888754    334599999995433444556789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       166 ~~~~l  170 (250)
T PRK12939        166 MTRSL  170 (250)
T ss_pred             HHHHH
Confidence            98863

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.77  E-value=1.4e-18  Score=128.78  Aligned_cols=137  Identities=17%  Similarity=0.198  Sum_probs=110.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecC--CCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRS--GRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~--~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      |+++||||+++||.+++++|+++|. .|+++.|+  .+...+     .....++.++++|++++++++.+++       .
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6899999999999999999999955 77777887  111110     1123688999999999999888765       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      +|++|||+|...          .+...+++|+.+.+.+.+++..++.++||++||.....+.+....|+.+|++++.+++
T Consensus        81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~askaal~~~~~  160 (167)
T PF00106_consen   81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVRGSPGMSAYSASKAALRGLTQ  160 (167)
T ss_dssp             ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTSSSTTBHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhccCCCCChhHHHHHHHHHHHHH
Confidence            799999999654          2245789999999999999988667799999997656667777899999999999988


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       161 ~l  162 (167)
T PF00106_consen  161 SL  162 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.77  E-value=8.7e-18  Score=131.02  Aligned_cols=131  Identities=18%  Similarity=0.142  Sum_probs=104.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc------CCCEEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD------GVTAVISCV  129 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d~vi~~a  129 (200)
                      +++++||||+|+||.+++++|+++|++|++++|+....      ...+++.+|++|+++++++++      ++|++|||+
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~a   76 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD------FPGELFACDLADIEQTAATLAQINEIHPVDAIVNNV   76 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc------cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECC
Confidence            57899999999999999999999999999999986542      123578999999998887775      589999999


Q ss_pred             ccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          130 GGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       130 g~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...          .+...+++|+.+..++.+++    ++.+.++||++||.. ..+.+....|+.+|.+.|.+++..
T Consensus        77 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~-~~~~~~~~~Y~~sK~a~~~~~~~~  153 (234)
T PRK07577         77 GIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRA-IFGALDRTSYSAAKSALVGCTRTW  153 (234)
T ss_pred             CCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcccc-ccCCCCchHHHHHHHHHHHHHHHH
Confidence            9643          12346788999988876665    445677999999953 223345678999999999988763

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.77  E-value=8e-18  Score=131.84  Aligned_cols=138  Identities=19%  Similarity=0.167  Sum_probs=106.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+++++|||++|++|.++++.|+++|++|+++.|+......      .....++.++.+|++|++++.++++       +
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999999999888887543111      1123568899999999998887765       5


Q ss_pred             CCEEEEccccCCC----------CcccchhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+|||++|....          +...+++|+.++.++++++.+.    +.++||++||.....+......|+.+|.+.|
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~~~~y~~sk~a~~  163 (248)
T PRK05557         84 VDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQANYAASKAGVI  163 (248)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCCCchhHHHHHHHH
Confidence            7999999986431          2345678999999888887643    5568999998533333455778999999999


Q ss_pred             HHHHh
Q 029008          188 SPLLA  192 (200)
Q Consensus       188 ~~~~~  192 (200)
                      .+++.
T Consensus       164 ~~~~~  168 (248)
T PRK05557        164 GFTKS  168 (248)
T ss_pred             HHHHH
Confidence            88775

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.77  E-value=6.3e-18  Score=133.75  Aligned_cols=140  Identities=14%  Similarity=0.048  Sum_probs=107.2

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCc--ccccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .++|+++||||+  ++||.+++++|+++|++|++.+|+....  .......++.++++|++|+++++++++       ++
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            457899999999  7999999999999999999998873211  111122467889999999998887654       48


Q ss_pred             CEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          123 TAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       123 d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      |++|||||...              +++..+++|+.+.+.+.+++.+.-  .+++|++||.....+.+....|+.+|+++
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~~~~~~Y~asKaal  164 (252)
T PRK06079         85 DGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAIPNYNVMGIAKAAL  164 (252)
T ss_pred             CEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccCCcchhhHHHHHHH
Confidence            99999999532              124567899999998888875531  25899999854334445567899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       165 ~~l~~~l  171 (252)
T PRK06079        165 ESSVRYL  171 (252)
T ss_pred             HHHHHHH
Confidence            9998864

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.77  E-value=3.5e-18  Score=135.70  Aligned_cols=140  Identities=18%  Similarity=0.129  Sum_probs=104.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++|+++||||+++||++++++|+++|++|+++.|+.....+       .....++.++.+|++|+++++++++      
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF   85 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            357899999999999999999999999999888765332111       1113468899999999998887765      


Q ss_pred             -CCCEEEEccccCC----------------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcch
Q 029008          121 -GVTAVISCVGGFG----------------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGY  179 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y  179 (200)
                       ++|++|||||...                .+...+++|+.+.+.+.+.+.    +.+.++||++||...-.+.+....|
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  165 (260)
T PRK08416         86 DRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIENYAGH  165 (260)
T ss_pred             CCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCCCcccc
Confidence             4799999997431                123356778877776655553    3345689999995433344556789


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|++++.+++..
T Consensus       166 ~asK~a~~~~~~~l  179 (260)
T PRK08416        166 GTSKAAVETMVKYA  179 (260)
T ss_pred             hhhHHHHHHHHHHH
Confidence            99999999999874

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.77  E-value=5.4e-18  Score=134.08  Aligned_cols=140  Identities=11%  Similarity=0.088  Sum_probs=107.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ..+|+++|||++|+||.+++++|++.|++|+++++.......   .....++.++++|++|.++++++++       ++|
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            457899999999999999999999999999988765432111   1113467889999999999888775       489


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||||...          .++..+++|+.+++.+.+++...    + .+++|++||...-.+......|+.+|+++|.
T Consensus        88 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~  167 (253)
T PRK08993         88 ILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMG  167 (253)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCCCcchHHHHHHHHH
Confidence            9999999632          24567899999999888887432    2 2589999995322334455789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       168 ~~~~l  172 (253)
T PRK08993        168 VTRLM  172 (253)
T ss_pred             HHHHH
Confidence            88764

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.77  E-value=5.1e-18  Score=131.93  Aligned_cols=138  Identities=17%  Similarity=0.135  Sum_probs=105.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-----CCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d~vi~~ag  130 (200)
                      +++++||||+|++|.+++++|+++|++|++++|+.+.........++.++.+|++|+++++++++     ++|+||||+|
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            47899999999999999999999999999999987653221122467888999999998887766     4899999998


Q ss_pred             cCC------------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCc---CCcCCcchhhhHHhhHHHHHh
Q 029008          131 GFG------------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGV---ANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       131 ~~~------------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~---~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ...            ++...+++|+.++..+++++...   +..+++++||.....   +......|+.+|++.+.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~~~~~~~Y~~sK~a~~~~~~~  160 (225)
T PRK08177         81 ISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPDGGEMPLYKASKAALNSMTRS  160 (225)
T ss_pred             ccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCCCCCccchHHHHHHHHHHHHH
Confidence            642            12346788999999888887543   335788888842211   123456799999999999986


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       161 l  161 (225)
T PRK08177        161 F  161 (225)
T ss_pred             H
Confidence            4

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.77  E-value=5.9e-18  Score=137.64  Aligned_cols=140  Identities=14%  Similarity=0.049  Sum_probs=107.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------~  121 (200)
                      .++++++||||+|+||.+++++|+++|++|++.++......+      .....++.++.+|++|+++++++++      +
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~   89 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG   89 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999999999998875432111      0113468899999999988887764      5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc-----------CCCEEEEEeccccCcCCcCCcchh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK-----------GVKRFVYISAADFGVANYLLQGYY  180 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~-----------~~~~~v~vSS~~~~~~~~~~~~Y~  180 (200)
                      +|++|||||...          +++..+++|+.+++++++++...           ..++||++||...-.+......|+
T Consensus        90 iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  169 (306)
T PRK07792         90 LDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQANYG  169 (306)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCCCCchHH
Confidence            899999999643          23457889999999998876421           125899999854333445567899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .+|++++.+++..
T Consensus       170 asKaal~~l~~~l  182 (306)
T PRK07792        170 AAKAGITALTLSA  182 (306)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.77  E-value=5.9e-18  Score=136.99  Aligned_cols=140  Identities=14%  Similarity=0.111  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc-CCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ..+++++||||+|+||.++++.|+++|++|++++|+.+...+   .. ....+..+.+|++|.++++++++       .+
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   86 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI   86 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            457899999999999999999999999999999997653211   11 12345667799999998887664       58


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      |++|||+|...          .++..+++|+.++.++++++...   ..++||++||...-.+.+....|+.+|++++.+
T Consensus        87 d~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  166 (296)
T PRK05872         87 DVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAPGMAAYCASKAGVEAF  166 (296)
T ss_pred             CEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCCCchHHHHHHHHHHHH
Confidence            99999999632          22456889999999998887542   236899999954333445567899999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++..
T Consensus       167 ~~~l  170 (296)
T PRK05872        167 ANAL  170 (296)
T ss_pred             HHHH
Confidence            8753

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.77  E-value=1.1e-17  Score=130.53  Aligned_cols=135  Identities=16%  Similarity=0.118  Sum_probs=105.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH-HHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS-DSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~d~vi~~ag~~  132 (200)
                      .++|+++|||++|+||.+++++|+++|++|++++|+.....    ..++.++.+|++++ +.+.+.+..+|++|||+|..
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~~   78 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL----SGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGIL   78 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc----CCcEEEEECChHHHHHHHHHhhCCCCEEEECCCCC
Confidence            45689999999999999999999999999999998754321    34688999999987 44445556799999999853


Q ss_pred             C-----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          133 G-----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       133 ~-----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      .           +++..+++|+.++.++++++..    .+.++||++||.....+.+....|+.+|++++.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~  153 (235)
T PRK06550         79 DDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGGAAYTASKHALAGFTKQ  153 (235)
T ss_pred             CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcccHHHHHHHHHHHHH
Confidence            1           1234688999999999888753    4456899999953333444567899999999988876

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.77  E-value=5.1e-18  Score=134.02  Aligned_cols=137  Identities=14%  Similarity=0.139  Sum_probs=107.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      +|+++||||+|+||.++++.|+++|++|++++|+......     .....++.++.+|++|+++++++++       .+|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            4789999999999999999999999999999988643211     0113478899999999998887664       579


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||+|...          .++..+++|+.+++++++++.+    .+ .++||++||.....+......|+.+|++.+.
T Consensus        81 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sKaa~~~  160 (252)
T PRK07677         81 ALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLA  160 (252)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCCCcchHHHHHHHHH
Confidence            9999998421          2355789999999999988843    22 3589999986433344556789999999999


Q ss_pred             HHHh
Q 029008          189 PLLA  192 (200)
Q Consensus       189 ~~~~  192 (200)
                      +++.
T Consensus       161 ~~~~  164 (252)
T PRK07677        161 MTRT  164 (252)
T ss_pred             HHHH
Confidence            8886

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.77  E-value=4.5e-18  Score=133.33  Aligned_cols=138  Identities=20%  Similarity=0.155  Sum_probs=105.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ++++++||||+|+||.++++.|+++|+.|++..|+.++..+  .....++.++.+|++|.++++++++       ++|++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46799999999999999999999999998888776543211  1113468899999999998887653       58999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |||+|...          .++..+++|+.++.++++++.+    .+.++||++||.....+.+....|+.+|.+.+.+++
T Consensus        85 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sk~a~~~~~~  164 (245)
T PRK12936         85 VNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQANYCASKAGMIGFSK  164 (245)
T ss_pred             EECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCCCcchHHHHHHHHHHHH
Confidence            99999632          2345678999999988887642    456799999994322233456789999998888876


Q ss_pred             h
Q 029008          192 A  192 (200)
Q Consensus       192 ~  192 (200)
                      .
T Consensus       165 ~  165 (245)
T PRK12936        165 S  165 (245)
T ss_pred             H
Confidence            5

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.77  E-value=3.7e-18  Score=135.91  Aligned_cols=139  Identities=16%  Similarity=0.069  Sum_probs=107.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999987543211     1112356889999999998887765       4


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      +|++|||+|...          .++..+++|+.++.++++++.+.   ..++||++||.....+.+....|+.+|++.|.
T Consensus        87 iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~~~~~Y~asK~a~~~  166 (264)
T PRK07576         87 IDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMPMQAHVCAAKAGVDM  166 (264)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCCCccHHHHHHHHHHH
Confidence            799999998432          12345789999999998887542   22599999995433445566789999999999


Q ss_pred             HHHh
Q 029008          189 PLLA  192 (200)
Q Consensus       189 ~~~~  192 (200)
                      +++.
T Consensus       167 l~~~  170 (264)
T PRK07576        167 LTRT  170 (264)
T ss_pred             HHHH
Confidence            9886

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.77  E-value=2.7e-18  Score=135.72  Aligned_cols=140  Identities=14%  Similarity=0.134  Sum_probs=106.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            457899999999999999999999999999999987543111     1112467889999999998887764       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcC--CcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVA--NYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~--~~~~~~Y~~sK~  184 (200)
                      +|++|||+|...          .++..+++|+.+++.+.+++..    .+ .+++|++||......  ......|+.+|+
T Consensus        87 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~Y~asKa  166 (253)
T PRK05867         87 IDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKA  166 (253)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCCCCccchHHHHH
Confidence            899999999642          2345678999999998888743    22 247999988532211  223468999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+++..
T Consensus       167 al~~~~~~l  175 (253)
T PRK05867        167 AVIHLTKAM  175 (253)
T ss_pred             HHHHHHHHH
Confidence            999999874

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.77  E-value=4.6e-18  Score=132.85  Aligned_cols=139  Identities=20%  Similarity=0.125  Sum_probs=107.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc---c-CCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD---S-WANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ++++++||||+|++|.+++++|+++|++|++++|++......   . ...++.++.+|+.|.+++.++++       ++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            458999999999999999999999999999999976432110   0 01568899999999998887775       689


Q ss_pred             EEEEccccCCC----------CcccchhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       124 ~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~---~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||++|....          ++..+++|+.+...+++++.+   .+.++||++||.....+......|..+|++.+.+.
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a~~~~~  164 (237)
T PRK07326         85 VLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFAGGAAYNASKFGLVGFS  164 (237)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCCCCchHHHHHHHHHHHH
Confidence            99999986421          235688899999998888754   34568999998533334445678999999999888


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       165 ~~~  167 (237)
T PRK07326        165 EAA  167 (237)
T ss_pred             HHH
Confidence            764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.76  E-value=6.1e-18  Score=133.77  Aligned_cols=140  Identities=17%  Similarity=0.099  Sum_probs=109.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|++++.++++       .
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            467899999999999999999999999999999998543111     1123468899999999998887765       4


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||+|...          .++..+++|+.+++.+.+.+.+    .+.++||++||.....+.+....|+.+|.+.+
T Consensus        89 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~  168 (256)
T PRK06124         89 LDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGDAVYPAAKQGLT  168 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCCccHhHHHHHHHH
Confidence            699999999642          2234688999999988866643    56779999999543344455688999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       169 ~~~~~l  174 (256)
T PRK06124        169 GLMRAL  174 (256)
T ss_pred             HHHHHH
Confidence            988763

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1e-17  Score=132.65  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=104.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ++++++||||+|+||.++++.|+++|++|+++.++.....+         .....++.++++|++|+++++++++     
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999999998777765432111         0112468889999999999987765     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                        ++|++|||||...          .++..+++|+.++..+++++.+.-  .+++++++|+..+...+....|+.+|+++
T Consensus        87 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~~~~~~Y~~sK~a~  166 (257)
T PRK12744         87 FGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFTPFYSAYAGSKAPV  166 (257)
T ss_pred             hCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccCCCcccchhhHHHH
Confidence              5899999999521          234568899999999999886542  24677664432233445668899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+++..
T Consensus       167 ~~~~~~l  173 (257)
T PRK12744        167 EHFTRAA  173 (257)
T ss_pred             HHHHHHH
Confidence            9999875

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.76  E-value=4.6e-18  Score=134.00  Aligned_cols=138  Identities=17%  Similarity=0.191  Sum_probs=104.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhcCC---------C
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGV---------T  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~---------d  123 (200)
                      ||+++||||+|+||++++++|+++|++|++++|+..+...   .....+++++.+|++|+++++++++.+         +
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVS   80 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCC
Confidence            4789999999999999999999999999999997632111   112357889999999999998877532         2


Q ss_pred             --EEEEccccCCC-----------CcccchhhHHHHHHHHHHHH----Hc-CCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          124 --AVISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EK-GVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       124 --~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~----~~-~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                        .+|||+|....           +...+++|+.+...+++.+.    +. +.++||++||.....+.++...|+.+|++
T Consensus        81 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sKaa  160 (251)
T PRK06924         81 SIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFGWSAYCSSKAG  160 (251)
T ss_pred             ceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCCCcHHHhHHHHH
Confidence              78999985321           23457889888776666553    32 34689999996444455667889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      .+.+++..
T Consensus       161 ~~~~~~~l  168 (251)
T PRK06924        161 LDMFTQTV  168 (251)
T ss_pred             HHHHHHHH
Confidence            99998864

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.76  E-value=7.1e-18  Score=134.11  Aligned_cols=139  Identities=14%  Similarity=0.110  Sum_probs=106.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccC-CCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSW-ANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~-~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+.++...      ... ..++.++.+|++|+++++++++      
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            457899999999999999999999999999999998654211      111 2367889999999998877654      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                       .+|++|||||...          .+...+++|+.+.+.+.+.+    ++.+.++||++||...-.+.+....|+.+|++
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~asKaa  165 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEPHMVATSAARAG  165 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCCCchHhHHHHHH
Confidence             5799999999632          23456788988887776665    33455799999995433344556789999999


Q ss_pred             hHHHHHh
Q 029008          186 NLSPLLA  192 (200)
Q Consensus       186 ~E~~~~~  192 (200)
                      .+.+++.
T Consensus       166 l~~~~~~  172 (265)
T PRK07062        166 LLNLVKS  172 (265)
T ss_pred             HHHHHHH
Confidence            9988875

>PRK09186 flagellin modification protein A; Provisional

Probab=99.76  E-value=7.5e-18  Score=133.10  Aligned_cols=138  Identities=13%  Similarity=0.125  Sum_probs=101.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhcC------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDG------  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~~------  121 (200)
                      .+|+++||||+|+||.++++.|+++|++|++++|+.+...+       ......+.++.+|++|++++.++++.      
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999987644211       11123466789999999999887763      


Q ss_pred             -CCEEEEccccCC-------------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccc-cCcCC---------
Q 029008          122 -VTAVISCVGGFG-------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAAD-FGVAN---------  173 (200)
Q Consensus       122 -~d~vi~~ag~~~-------------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~-~~~~~---------  173 (200)
                       +|+|||||+...             .+...+++|+.+.+.+++++    ++.+.++||++||.. +..+.         
T Consensus        83 ~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~  162 (256)
T PRK09186         83 KIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIYEGTSM  162 (256)
T ss_pred             CccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchhcccccc
Confidence             799999997431             12345678888887665554    445677999999942 21111         


Q ss_pred             cCCcchhhhHHhhHHHHHh
Q 029008          174 YLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~  192 (200)
                      .....|+++|++.+.+.+.
T Consensus       163 ~~~~~Y~~sK~a~~~l~~~  181 (256)
T PRK09186        163 TSPVEYAAIKAGIIHLTKY  181 (256)
T ss_pred             CCcchhHHHHHHHHHHHHH
Confidence            1224699999999999864

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.76  E-value=5.8e-18  Score=133.04  Aligned_cols=139  Identities=21%  Similarity=0.241  Sum_probs=104.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----c--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----D--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++|||++|+||.+++++|+++|++|++..++......    .  ....++.++.+|+.|.+++.++++       +
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999999998886543221110    0  112357788999999998887664       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+||||+|...          .++..+++|+.+++.+.+++    .+.+.++||++||.....+......|+.+|++.+
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~y~~sK~a~~  161 (246)
T PRK12938         82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIH  161 (246)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCCCChhHHHHHHHHH
Confidence            899999999643          23456789999988766655    4456679999999644444556788999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       162 ~~~~~l  167 (246)
T PRK12938        162 GFTMSL  167 (246)
T ss_pred             HHHHHH
Confidence            887753

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.76  E-value=5.7e-18  Score=133.70  Aligned_cols=140  Identities=11%  Similarity=0.040  Sum_probs=108.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.++...     .....++.++.+|++|.+++.++++       .
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            356899999999999999999999999999999998643111     1113468899999999998887765       4


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||+|...           .++..+++|+.+...+++++    .+.+.+++|++||...-.+.+....|+.+|++.
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~  164 (253)
T PRK06172         85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAV  164 (253)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHHHHHHH
Confidence            699999998632           12446789999998776654    345567899999954333455678899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       165 ~~~~~~l  171 (253)
T PRK06172        165 IGLTKSA  171 (253)
T ss_pred             HHHHHHH
Confidence            9988864

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.76  E-value=9.5e-18  Score=130.89  Aligned_cols=141  Identities=21%  Similarity=0.262  Sum_probs=112.5

Q ss_pred             CCCCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc--c--CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           50 NVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--S--WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        50 ~~~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      +..+..+++|+||||+||||++|+..|..+|++|++++.-.......  .  ...+++.+.-|+..     .++..+|.|
T Consensus        21 ~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~-----pl~~evD~I   95 (350)
T KOG1429|consen   21 QVKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVE-----PLLKEVDQI   95 (350)
T ss_pred             cccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechh-----HHHHHhhhh
Confidence            34556779999999999999999999999999999999765443221  1  23477777778754     478899999


Q ss_pred             EEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------cCCcchhhhH
Q 029008          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------YLLQGYYEGK  183 (200)
Q Consensus       126 i~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~---------------~~~~~Y~~sK  183 (200)
                      ||.|++..      .+-+...+|+.++.+++-.|++.+ +||++.|| -+||.+.               .+.+.|...|
T Consensus        96 yhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegK  174 (350)
T KOG1429|consen   96 YHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGK  174 (350)
T ss_pred             hhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHH
Confidence            99998654      345667899999999999999988 68999887 4688653               3457899999


Q ss_pred             HhhHHHHHhhccC
Q 029008          184 DSNLSPLLACYSL  196 (200)
Q Consensus       184 ~~~E~~~~~~~~~  196 (200)
                      ..+|.++..++..
T Consensus       175 r~aE~L~~~y~k~  187 (350)
T KOG1429|consen  175 RVAETLCYAYHKQ  187 (350)
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999987543

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.3e-17  Score=132.35  Aligned_cols=137  Identities=10%  Similarity=0.101  Sum_probs=106.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      +++++||||+|+||.++++.|+++|++|++++|+......     .....++.++.+|++|++.+.++++       ++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999987543111     0113468899999999999888775       589


Q ss_pred             EEEEccccCCC-----------CcccchhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFGS-----------NSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~~---~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +||||+|....           +...+++|+.++.++++.+.+   .+.+++|++||.....+..+...|+.+|.+.|.+
T Consensus        81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~~~  160 (263)
T PRK06181         81 ILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVPTRSGYAASKHALHGF  160 (263)
T ss_pred             EEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCCCccHHHHHHHHHHHH
Confidence            99999986431           123478999999999988853   2346899999854333455668899999999998


Q ss_pred             HHh
Q 029008          190 LLA  192 (200)
Q Consensus       190 ~~~  192 (200)
                      ++.
T Consensus       161 ~~~  163 (263)
T PRK06181        161 FDS  163 (263)
T ss_pred             HHH
Confidence            875

>PRK06484 short chain dehydrogenase; Validated

Probab=99.76  E-value=8.7e-18  Score=145.65  Aligned_cols=141  Identities=12%  Similarity=0.128  Sum_probs=112.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.+....  .....++..+.+|++|+++++++++       .+|
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4468899999999999999999999999999999997543211  1123467789999999999887775       479


Q ss_pred             EEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          124 AVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       124 ~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      ++|||||...           .++..+++|+.+++++.+++...  +.++||++||...-.+.++...|+.+|++++.++
T Consensus       346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~l~  425 (520)
T PRK06484        346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALPPRNAYCASKAAVTMLS  425 (520)
T ss_pred             EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCCCCchhHHHHHHHHHHH
Confidence            9999999642           23457899999999999888654  3468999999644445566789999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       426 ~~l  428 (520)
T PRK06484        426 RSL  428 (520)
T ss_pred             HHH
Confidence            864

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.76  E-value=8.3e-18  Score=132.40  Aligned_cols=141  Identities=15%  Similarity=0.098  Sum_probs=106.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCC--CHHHHHHHh-----
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLL--SSDSWKEAL-----  119 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~--d~~~~~~~~-----  119 (200)
                      ...+++++|||++|+||.+++++|+++|++|++++|+.+....      .....++.++.+|++  +++++.+++     
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999998643111      111235778888886  555555443     


Q ss_pred             --cCCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhh
Q 029008          120 --DGVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       120 --~~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                        ..+|+||||||...           .++..+++|+.+++++++++    .+.+.++||++||.....+......|+.+
T Consensus        89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~~~~Y~~s  168 (247)
T PRK08945         89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANWGAYAVS  168 (247)
T ss_pred             HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCCCCcccHHH
Confidence              36899999998532           12456789999988888876    34567899999995433344566789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |+++|.+++..
T Consensus       169 K~a~~~~~~~~  179 (247)
T PRK08945        169 KFATEGMMQVL  179 (247)
T ss_pred             HHHHHHHHHHH
Confidence            99999988863

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.76  E-value=1.1e-17  Score=131.29  Aligned_cols=140  Identities=14%  Similarity=0.055  Sum_probs=107.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEe-ecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++++++||||+|+||.++++.|+++|++|+++ .|+.+....     .....++.++.+|++|++++.++++       
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFG   82 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999998 776543211     1113468899999999999888775       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|+|||++|...          .++..+++|+.+..++++.+..    .+.++||++||...-.+......|+.+|.+.
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~sK~a~  162 (247)
T PRK05565         83 KIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCEVLYSASKGAV  162 (247)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCCccHHHHHHHHH
Confidence            6899999998642          1245678999999888877753    4567899999853223344567899999998


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       163 ~~~~~~~  169 (247)
T PRK05565        163 NAFTKAL  169 (247)
T ss_pred             HHHHHHH
Confidence            8887763

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1e-17  Score=130.69  Aligned_cols=139  Identities=23%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ..+++++||||+|+||..++++|+++|++|++++|+..+..+   ......++++.+|+.|.++++++++       ++|
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            346899999999999999999999999999999997654211   1122357888899999998887765       589


Q ss_pred             EEEEccccCCC----------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||++|....          +...+++|+.++.++++++.    +.+.++||++||.....+.++...|+.+|.+.+.+
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sk~a~~~~  164 (239)
T PRK12828         85 ALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGMGAYAAAKAGVARL  164 (239)
T ss_pred             EEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCCCcchhHHHHHHHHHH
Confidence            99999985321          23457789999998888764    45678999999954333345567899999999888


Q ss_pred             HHh
Q 029008          190 LLA  192 (200)
Q Consensus       190 ~~~  192 (200)
                      ++.
T Consensus       165 ~~~  167 (239)
T PRK12828        165 TEA  167 (239)
T ss_pred             HHH
Confidence            875

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.76  E-value=9e-18  Score=133.11  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=106.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      .++++++||||+|++|.+++++|+++|++|++++|+.+...+   .....++.++.+|++|++++..+++       ++|
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   88 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD   88 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            356899999999999999999999999999999997543211   1111256889999999998887664       689


Q ss_pred             EEEEccccCCC-----------CcccchhhHHHHHHHHHHHH----HcCC-CEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          124 AVISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EKGV-KRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       124 ~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~----~~~~-~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|||++|....           +...+++|+.++..+++++.    ..+. ++|+++||.....+.+....|+.+|.+.|
T Consensus        89 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~~~y~~~K~a~~  168 (264)
T PRK12829         89 VLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGRTPYAASKWAVV  168 (264)
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCCchhHHHHHHHH
Confidence            99999996521           24567899999998888773    3344 57888887432233445567999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       169 ~~~~~l  174 (264)
T PRK12829        169 GLVKSL  174 (264)
T ss_pred             HHHHHH
Confidence            988763

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.76  E-value=7.4e-18  Score=130.66  Aligned_cols=135  Identities=16%  Similarity=0.037  Sum_probs=102.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag~  131 (200)
                      +|+++||||+|++|.++++.|+++ ++|++++|+.+..... ....+++++.+|++|+++++++++   ++|+|||++|.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   81 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGV   81 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            579999999999999999999999 9999999985442111 112368899999999999999887   58999999986


Q ss_pred             CCC----------CcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          132 FGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       132 ~~~----------~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ...          +...+++|+.+...+.+.+    ++. .+++|++||.....+..+...|+.+|.+.|.+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~~~~~~y~~~K~a~~~~~~~  155 (227)
T PRK08219         82 ADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRANPGWGSYAASKFALRALADA  155 (227)
T ss_pred             CCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcCCCCchHHHHHHHHHHHHHH
Confidence            431          2334678888866555544    333 46899999854333445567899999999988775

>PRK08017 oxidoreductase; Provisional

Probab=99.76  E-value=4.9e-18  Score=134.12  Aligned_cols=136  Identities=17%  Similarity=0.027  Sum_probs=104.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--------CCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--------GVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--------~~d~vi~  127 (200)
                      +++++||||+|+||.++++.|+++|++|++++|+.++... ....+++.+.+|+.|.+++..+++        .+|.+||
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~   80 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVAR-MNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFN   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHH-HHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            4689999999999999999999999999999998654221 112357889999999988766553        4689999


Q ss_pred             ccccCC----------CCcccchhhHHHHHHH----HHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          128 CVGGFG----------SNSYMYKINGTANINA----IRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       128 ~ag~~~----------~~~~~~~~n~~~~~~~----~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ++|...          .++..+++|+.++.++    ++.+.+.+.+++|++||.....+.+....|+.+|.+.|.+.+.
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~~~~~~~~~  159 (256)
T PRK08017         81 NAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDA  159 (256)
T ss_pred             CCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCCCCccHHHHHHHHHHHHHHH
Confidence            998532          1235678999888775    5556667778999999954334456678899999999998764

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.76  E-value=6.9e-18  Score=132.93  Aligned_cols=139  Identities=11%  Similarity=0.001  Sum_probs=106.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc------cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++++++||||+|+||++++++|+++|++|+++.|+.......      ....++.++.+|+++++++.++++       +
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999999999999999998877654321110      112357788999999998877665       5


Q ss_pred             CCEEEEccccCCC----------CcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       122 ~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|+||||+|....          ++..+++|+.+..++++++.+.  ..++||++||...-.+.++...|+.+|++.|.+
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~~~  164 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAYGLSIYGAMKAAVINL  164 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCCCchHHHHHHHHHHHH
Confidence            7999999995221          1356789999999988888654  235899999954334556678999999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++..
T Consensus       165 ~~~l  168 (252)
T PRK06077        165 TKYL  168 (252)
T ss_pred             HHHH
Confidence            8864

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.76  E-value=9.4e-18  Score=133.18  Aligned_cols=139  Identities=16%  Similarity=0.091  Sum_probs=106.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--c--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--R--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      .+++++||||+|+||.+++++|+++|++|++++|+.....  .  .....++.++.+|++|+++++++++       .+|
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id   84 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRID   84 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999998753210  0  1112467889999999999888765       579


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEecccc-CcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADF-GVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~-~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||+|...          .++..+++|+.++..+++++.+    .+.++||++||... ..+.+....|+.+|.+.|.
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~  164 (263)
T PRK08226         85 ILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVG  164 (263)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCCCCcchHHHHHHHHHH
Confidence            9999999632          1234578999999988888653    34568999998432 2334556789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       165 ~~~~l  169 (263)
T PRK08226        165 LTKSL  169 (263)
T ss_pred             HHHHH
Confidence            88864

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.75  E-value=1.8e-17  Score=131.17  Aligned_cols=140  Identities=13%  Similarity=0.056  Sum_probs=106.1

Q ss_pred             CCCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCC-----------cc---c--ccCCCCeeEEEccCCCHHHH
Q 029008           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRS-----------SL---R--DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        54 ~~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~-----------~~---~--~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      .++++++||||+|  +||.+++++|+++|++|++++|++..           ..   .  .....++.++.+|++|.+++
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~   82 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP   82 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            3568999999995  79999999999999999999987221           00   0  01134689999999999888


Q ss_pred             HHHhc-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCCc
Q 029008          116 KEALD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVANY  174 (200)
Q Consensus       116 ~~~~~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~~~~~~  174 (200)
                      .++++       .+|+||||+|...          .++..+++|+.++..+++++.+.    +.++||++||.....+..
T Consensus        83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~  162 (256)
T PRK12748         83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPMP  162 (256)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCCC
Confidence            77664       4799999998632          12345789999999999887543    346899999953223334


Q ss_pred             CCcchhhhHHhhHHHHHhh
Q 029008          175 LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ....|+.+|+++|.+++..
T Consensus       163 ~~~~Y~~sK~a~~~~~~~l  181 (256)
T PRK12748        163 DELAYAATKGAIEAFTKSL  181 (256)
T ss_pred             CchHHHHHHHHHHHHHHHH
Confidence            5678999999999988763

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.75  E-value=2.2e-17  Score=131.17  Aligned_cols=140  Identities=19%  Similarity=0.094  Sum_probs=107.7

Q ss_pred             CCCCeEEEEccCc-hhHHHHHHHHHHCCCcEEEeecCCCCccc------c-cCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNG-FVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~-~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ..+++++||||+| +||.++++.|+++|++|++++|+.++...      . ....++.++.+|++|+++++++++     
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3568999999997 79999999999999999999887643211      0 112368899999999998887764     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                        .+|++|||+|...          .+...+++|+.+.+.+++++.+    .+ ..+||++||.....+..+...|+.+|
T Consensus        95 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK  174 (262)
T PRK07831         95 LGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHGQAHYAAAK  174 (262)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCCcchHHHH
Confidence              5799999999532          2345678999999988887643    33 46899998854334555677899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       175 aal~~~~~~l  184 (262)
T PRK07831        175 AGVMALTRCS  184 (262)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>PRK05865 hypothetical protein; Provisional

Probab=99.75  E-value=1.5e-17  Score=149.34  Aligned_cols=116  Identities=22%  Similarity=0.394  Sum_probs=100.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~  136 (200)
                      |+|+||||+||||++++++|+++|++|++++|+....    ...++.++.+|+.|.+.+.++++++|+|||+|+....  
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~----~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~--   74 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS----WPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGR--   74 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh----cccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccc--
Confidence            4799999999999999999999999999999874331    1236889999999999999999999999999986432  


Q ss_pred             ccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          137 YMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       137 ~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                       .+++|+.++.+++++|++.++++||++||..              |.++|++++++
T Consensus        75 -~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~--------------K~aaE~ll~~~  116 (854)
T PRK05865         75 -NDHINIDGTANVLKAMAETGTGRIVFTSSGH--------------QPRVEQMLADC  116 (854)
T ss_pred             -hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH--------------HHHHHHHHHHc
Confidence             6789999999999999999999999999952              88888888764

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.75  E-value=2e-17  Score=147.52  Aligned_cols=119  Identities=18%  Similarity=0.238  Sum_probs=93.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~  132 (200)
                      +.|+||||||+||||++|++.|.++|++|...                   .+|++|.+.+...+.  ++|+|||+|+..
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~-------------------~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~  439 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG-------------------KGRLEDRSSLLADIRNVKPTHVFNAAGVT  439 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEee-------------------ccccccHHHHHHHHHhhCCCEEEECCccc
Confidence            45799999999999999999999999987311                   136788888888876  689999999865


Q ss_pred             C---------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc----------C------C-cCCcchhhhHHh
Q 029008          133 G---------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV----------A------N-YLLQGYYEGKDS  185 (200)
Q Consensus       133 ~---------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~----------~------~-~~~~~Y~~sK~~  185 (200)
                      .         .+...+++|+.++.+++++|++.|++ +|++|| ..|+.          +      . ++.+.|+.||.+
T Consensus       440 ~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~-~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Yg~sK~~  518 (668)
T PLN02260        440 GRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL-MMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFYSKTKAM  518 (668)
T ss_pred             CCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe-EEEEcccceecCCcccccccCCCCCcCCCCCCCCChhhHHHHH
Confidence            2         23456789999999999999999986 555555 44321          1      0 123789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +|++++.+
T Consensus       519 ~E~~~~~~  526 (668)
T PLN02260        519 VEELLREY  526 (668)
T ss_pred             HHHHHHhh
Confidence            99999875

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.75  E-value=1.3e-17  Score=132.00  Aligned_cols=138  Identities=18%  Similarity=0.143  Sum_probs=105.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ++++++||||+|+||.+++++|+++|++|++++|+.+....   .....++.++.+|+.|++++.++++       ++|+
T Consensus         1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999999999999999999999999999987654211   1123468899999999999987775       4899


Q ss_pred             EEEccccCCC----------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +||++|....          +...+++|+.+.+++++++.    +.+.++||++||.. +........|+.+|++.+.++
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~-~~~~~~~~~y~~sK~a~~~~~  159 (257)
T PRK07074         81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVN-GMAALGHPAYSAAKAGLIHYT  159 (257)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchh-hcCCCCCcccHHHHHHHHHHH
Confidence            9999986431          12345789999998888873    34567899999842 112234468999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       160 ~~~  162 (257)
T PRK07074        160 KLL  162 (257)
T ss_pred             HHH
Confidence            875

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.75  E-value=1.1e-17  Score=134.73  Aligned_cols=140  Identities=12%  Similarity=0.099  Sum_probs=106.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC---------CCccc-----ccCCCCeeEEEccCCCHHHHHHHh
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG---------RSSLR-----DSWANNVIWHQGNLLSSDSWKEAL  119 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~  119 (200)
                      .++++++||||+++||.+++++|+++|++|++++|+.         +....     .....++.++.+|++|++++++++
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            3568999999999999999999999999999988764         11000     011346788999999998888766


Q ss_pred             c-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC------CCEEEEEeccccCcC
Q 029008          120 D-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG------VKRFVYISAADFGVA  172 (200)
Q Consensus       120 ~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~------~~~~v~vSS~~~~~~  172 (200)
                      +       .+|++|||||...          .++..+++|+.+++.+.+++..    .+      .++||++||...-.+
T Consensus        84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~  163 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG  163 (286)
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcC
Confidence            4       5799999999632          2356789999999988877642    11      248999999543345


Q ss_pred             CcCCcchhhhHHhhHHHHHhh
Q 029008          173 NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+....|+.+|++++.+.+..
T Consensus       164 ~~~~~~Y~asKaal~~l~~~l  184 (286)
T PRK07791        164 SVGQGNYSAAKAGIAALTLVA  184 (286)
T ss_pred             CCCchhhHHHHHHHHHHHHHH
Confidence            556789999999999988863

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.75  E-value=5.1e-18  Score=132.11  Aligned_cols=134  Identities=13%  Similarity=-0.031  Sum_probs=106.5

Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHHHHhcC---CCEEEEccccC
Q 029008           60 LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDG---VTAVISCVGGF  132 (200)
Q Consensus        60 lVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~---~d~vi~~ag~~  132 (200)
                      +||||+|+||.+++++|+++|++|++++|+.+.....    ....+++++.+|++|++++.++++.   +|++||++|..
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~~   80 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAADT   80 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence            5999999999999999999999999999975432110    0134688999999999999998864   79999999853


Q ss_pred             C----------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          133 G----------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ~----------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .          ++...+++|+.+++++.++....+.++||++||.....+.++...|+.+|++++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~l  151 (230)
T PRK07041         81 PGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPSASGVLQGAINAALEALARGL  151 (230)
T ss_pred             CCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCCCcchHHHHHHHHHHHHHHHH
Confidence            2          234567899999999999665555679999999543344566788999999999998864

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.75  E-value=1.8e-17  Score=131.71  Aligned_cols=139  Identities=16%  Similarity=0.155  Sum_probs=107.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc------CCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD------GVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d~  124 (200)
                      .+++++||||+|+||.+++++|+++|++|++++|+.+....    .....++.++.+|++|+++++++++      .+|+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            46799999999999999999999999999999998543211    1123478899999999998887654      5799


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||+|...          .....+++|+.++.++++.+.+    .+.+++|++||.....+......|+.+|++.+.++
T Consensus        84 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  163 (263)
T PRK09072         84 LINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGYASYCASKFALRGFS  163 (263)
T ss_pred             EEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCCCccHHHHHHHHHHHHH
Confidence            999998642          1134678999999988888753    34568999998533334445678999999998887


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       164 ~~l  166 (263)
T PRK09072        164 EAL  166 (263)
T ss_pred             HHH
Confidence            753

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.75  E-value=7.9e-18  Score=133.09  Aligned_cols=140  Identities=13%  Similarity=0.076  Sum_probs=108.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|+++++++.++++       .
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999997644211     0113468899999999999888775       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC--------CCEEEEEeccccCcCCcCCcch
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG--------VKRFVYISAADFGVANYLLQGY  179 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~--------~~~~v~vSS~~~~~~~~~~~~Y  179 (200)
                      +|++|||+|...          .++..+++|+.+.+.+.+++..    ..        .+++|++||.....+.+....|
T Consensus        87 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y  166 (258)
T PRK06949         87 IDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQIGLY  166 (258)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCCccHH
Confidence            899999999532          2345678999999988877642    21        2589999996433444566789


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|++.+.+++..
T Consensus       167 ~~sK~a~~~~~~~l  180 (258)
T PRK06949        167 CMSKAAVVHMTRAM  180 (258)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988864

>PRK07069 short chain dehydrogenase; Validated

Probab=99.75  E-value=1.8e-17  Score=130.42  Aligned_cols=136  Identities=16%  Similarity=0.148  Sum_probs=101.6

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-------c-CCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-------S-WANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------~-~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      +++||||+|+||.++++.|+++|++|++++|+.....+.       . ....+..+.+|++|+++++++++       ++
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   80 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL   80 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            489999999999999999999999999999873221110       0 01234568899999998877664       57


Q ss_pred             CEEEEccccCC----------CCcccchhhHH----HHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGT----ANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~----~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||+|...          ++...+++|+.    .+..+++.+++.+.++||++||...-.+.+....|+.+|.+.+.
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~Y~~sK~a~~~  160 (251)
T PRK07069         81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPDYTAYNASKAAVAS  160 (251)
T ss_pred             cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCCCchhHHHHHHHHH
Confidence            99999998643          12345778887    55566677777777899999995433344566789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++.+
T Consensus       161 ~~~~l  165 (251)
T PRK07069        161 LTKSI  165 (251)
T ss_pred             HHHHH
Confidence            88853

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.74  E-value=1.1e-17  Score=133.85  Aligned_cols=139  Identities=9%  Similarity=-0.018  Sum_probs=104.3

Q ss_pred             CCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCCc--cccc--CCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSS--LRDS--WANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~--~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||++  +||.+++++|+++|++|++.+|+....  ....  ......++.+|++|+++++++++       .
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            468999999996  999999999999999999988864211  0110  11223578999999999887764       4


Q ss_pred             CCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||||...              .|+..+++|+.+++.+.+++...  ..++||++||.....+.+....|+++|++
T Consensus        86 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~asKaA  165 (271)
T PRK06505         86 LDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVMPNYNVMGVAKAA  165 (271)
T ss_pred             CCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccCCccchhhhhHHH
Confidence            899999999532              13456789999999888877543  12589999985433344556789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       166 l~~l~r~l  173 (271)
T PRK06505        166 LEASVRYL  173 (271)
T ss_pred             HHHHHHHH
Confidence            99998863

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.74  E-value=4.9e-17  Score=129.13  Aligned_cols=140  Identities=11%  Similarity=0.018  Sum_probs=105.4

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCc--cc----ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LR----DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ..+|+++||||+  ++||.+++++|+++|++|++++|+....  .+    .....++.++.+|++|+++++++++     
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            356899999997  8999999999999999999988753221  11    1112467889999999999887664     


Q ss_pred             --CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 --GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 --~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                        .+|++|||+|...              .+...+++|+.+.+.+.+++.+.-  ..+||++||.....+.+....|+.+
T Consensus        85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~as  164 (257)
T PRK08594         85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQNYNVMGVA  164 (257)
T ss_pred             CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCCCCchhHHH
Confidence              4899999998532              112356889999888777765432  2589999996443444556789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+.+..
T Consensus       165 Kaal~~l~~~l  175 (257)
T PRK08594        165 KASLEASVKYL  175 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999998863

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.74  E-value=2.4e-17  Score=132.12  Aligned_cols=138  Identities=11%  Similarity=-0.001  Sum_probs=104.4

Q ss_pred             CCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCC--ccc---ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRS--SLR---DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .+|+++||||+  ++||.++++.|+++|++|++.+|+...  ..+   ...... .++.+|++|+++++++++       
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence            56899999997  799999999999999999999887421  111   111123 678999999999887764       


Q ss_pred             CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      .+|++|||||...              .++..+++|+.+++.+.+++...  ..++||++||.....+.+....|+.+|+
T Consensus        83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~~~~~~Y~asKa  162 (274)
T PRK08415         83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYVPHYNVMGVAKA  162 (274)
T ss_pred             CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCCCcchhhhhHHH
Confidence            4799999999632              13457899999999888877543  1258999998543334445678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       163 al~~l~~~l  171 (274)
T PRK08415        163 ALESSVRYL  171 (274)
T ss_pred             HHHHHHHHH
Confidence            999998864

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.74  E-value=2.4e-17  Score=130.88  Aligned_cols=140  Identities=9%  Similarity=-0.037  Sum_probs=105.5

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCc--ccc--cCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LRD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+  ++||.+++++|+++|++|++++|+.+..  .+.  .....+.++.+|++|+++++++++       
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            357899999998  5999999999999999999998875321  111  011235688999999999887664       


Q ss_pred             CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      .+|++|||||...              .++..+++|+.+.+.+.+++...  ..++||++||.....+.+....|+.+|+
T Consensus        88 ~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~~~~~~Y~asKa  167 (258)
T PRK07533         88 RLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVVENYNLMGPVKA  167 (258)
T ss_pred             CCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCCccchhhHHHHH
Confidence            4799999998532              23457899999999988877543  1258999998543333445678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       168 al~~l~~~l  176 (258)
T PRK07533        168 ALESSVRYL  176 (258)
T ss_pred             HHHHHHHHH
Confidence            999988863

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.74  E-value=2.8e-17  Score=129.20  Aligned_cols=137  Identities=12%  Similarity=0.138  Sum_probs=102.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      +++++||||+|+||.+++++|+++|++|+++.++......      .....++.++.+|++|.+++.++++       .+
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            5689999999999999999999999998877654322111      1113467889999999999888775       57


Q ss_pred             CEEEEccccCCC-----------CcccchhhHHHHHHHHHHHHHcC-------CCEEEEEeccc--cCcCCcCCcchhhh
Q 029008          123 TAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEKG-------VKRFVYISAAD--FGVANYLLQGYYEG  182 (200)
Q Consensus       123 d~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~~~~-------~~~~v~vSS~~--~~~~~~~~~~Y~~s  182 (200)
                      |+||||+|....           +...+++|+.++.++++++.+..       .++||++||..  ++.+ .....|+.+
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-~~~~~Y~~s  160 (248)
T PRK06123         82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP-GEYIDYAAS  160 (248)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC-CCccchHHH
Confidence            999999996421           13568999999999888875431       23799999943  3322 123569999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++.|.+++..
T Consensus       161 Kaa~~~~~~~l  171 (248)
T PRK06123        161 KGAIDTMTIGL  171 (248)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.74  E-value=4e-17  Score=129.58  Aligned_cols=140  Identities=14%  Similarity=0.073  Sum_probs=105.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+++++||||+|+||.+++++|+++|++|+++.|+......      .....++.++.+|++|.+++.++++       
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g   84 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG   84 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999988885432111      1113467889999999998887764       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcC-CCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKG-VKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      .+|++|||+|...          .++..+++|+.+.+.+.+.+    .+.+ .++||++||.....+.++...|+.+|++
T Consensus        85 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa  164 (261)
T PRK08936         85 TLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPLFVHYAASKGG  164 (261)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCCCcccHHHHHH
Confidence            4799999999632          12346789988887655544    4444 3689999996434445667799999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      .+.+.+..
T Consensus       165 ~~~~~~~l  172 (261)
T PRK08936        165 VKLMTETL  172 (261)
T ss_pred             HHHHHHHH
Confidence            98887763

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.74  E-value=1.9e-17  Score=130.27  Aligned_cols=138  Identities=15%  Similarity=0.136  Sum_probs=100.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      |+|+++||||+|+||..+++.|+++|++|+++.++..+..+      .....++.++.+|++|+++++++++       .
T Consensus         1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06947          1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR   80 (248)
T ss_pred             CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            46799999999999999999999999999877654322111      1113468899999999988877664       5


Q ss_pred             CCEEEEccccCCC-----------CcccchhhHHHHHHHHHHHHHc----C---CCEEEEEeccc--cCcCCcCCcchhh
Q 029008          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK----G---VKRFVYISAAD--FGVANYLLQGYYE  181 (200)
Q Consensus       122 ~d~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~~~----~---~~~~v~vSS~~--~~~~~~~~~~Y~~  181 (200)
                      +|++|||+|....           +...+++|+.+++.+++++.+.    +   ..+||++||..  ++.+ .....|+.
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~-~~~~~Y~~  159 (248)
T PRK06947         81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP-NEYVDYAG  159 (248)
T ss_pred             CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC-CCCcccHh
Confidence            8999999996421           1345789999998887654332    1   23699999843  2322 22357999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|++.+.++++.
T Consensus       160 sK~~~~~~~~~l  171 (248)
T PRK06947        160 SKGAVDTLTLGL  171 (248)
T ss_pred             hHHHHHHHHHHH
Confidence            999999888763

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.74  E-value=2.2e-17  Score=130.93  Aligned_cols=137  Identities=17%  Similarity=0.086  Sum_probs=101.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c-cCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~-~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      |+++||||+|+||++++++|+++|++|++++|+.+...+   . ....++.++.+|++|+++++++++       ++|++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            479999999999999999999999999999987643111   0 112367889999999999887764       58999


Q ss_pred             EEccccCC------------CCcccchhhHHHHHHHHHH----HH-HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          126 ISCVGGFG------------SNSYMYKINGTANINAIRA----AS-EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       126 i~~ag~~~------------~~~~~~~~n~~~~~~~~~~----a~-~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |||+|...            ++...+.+|+.+...+.+.    +. +.+.++||++||.....+.++...|+.+|++++.
T Consensus        81 i~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sKaa~~~  160 (259)
T PRK08340         81 VWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPPLVLADVTRAGLVQ  160 (259)
T ss_pred             EECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCCchHHHHHHHHHHH
Confidence            99999632            1123456777776554433    32 2345689999996444455667789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       161 ~~~~l  165 (259)
T PRK08340        161 LAKGV  165 (259)
T ss_pred             HHHHH
Confidence            98864

>TIGR02415 23BDH acetoin reductases

Probab=99.74  E-value=2.1e-17  Score=130.44  Aligned_cols=137  Identities=18%  Similarity=0.190  Sum_probs=104.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      |+++|||++|+||.+++++|++.|++|+++.|+.....+     .....++.++.+|++|++++.++++       .+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            579999999999999999999999999999987543111     1113468899999999999887764       4799


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ||||+|...          .++..+++|+.+++.+++++.+    .+ .++||++||.....+.+....|+.+|++.+.+
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~  160 (254)
T TIGR02415        81 MVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPILSAYSSTKFAVRGL  160 (254)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCCcchHHHHHHHHHH
Confidence            999998632          1235688999999877766543    33 36899999854334455678999999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++..
T Consensus       161 ~~~l  164 (254)
T TIGR02415       161 TQTA  164 (254)
T ss_pred             HHHH
Confidence            8753

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.74  E-value=3.1e-17  Score=130.03  Aligned_cols=140  Identities=13%  Similarity=0.115  Sum_probs=109.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc---CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD---GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~  124 (200)
                      ..+++++|||++|++|.++++.|+++|++|++++|+.++...      .....++.++.+|++|++++.++++   .+|+
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            356899999999999999999999999999999987653211      1113468899999999999888765   5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||+|...          .++..+++|+.+.+.+.+++    .+.+.+++|++||.....+......|+.+|.+++.++
T Consensus        85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~ask~al~~~~  164 (259)
T PRK06125         85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDADYICGSAGNAALMAFT  164 (259)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCCCchHhHHHHHHHHHHH
Confidence            999998532          23556889999998888776    3344468999998644444455667899999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      ++.
T Consensus       165 ~~l  167 (259)
T PRK06125        165 RAL  167 (259)
T ss_pred             HHH
Confidence            864

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.74  E-value=2.2e-17  Score=131.56  Aligned_cols=137  Identities=15%  Similarity=0.112  Sum_probs=100.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHH----HHHh------
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSW----KEAL------  119 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~----~~~~------  119 (200)
                      +.++||||+|+||.+++++|+++|++|+++.|+.....+       .....++.++.+|++|.+.+    ++++      
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~   81 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA   81 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence            579999999999999999999999999998765332111       11123566789999998754    3332      


Q ss_pred             -cCCCEEEEccccCC-------C--------------CcccchhhHHHHHHHHHHHHHcC----------CCEEEEEecc
Q 029008          120 -DGVTAVISCVGGFG-------S--------------NSYMYKINGTANINAIRAASEKG----------VKRFVYISAA  167 (200)
Q Consensus       120 -~~~d~vi~~ag~~~-------~--------------~~~~~~~n~~~~~~~~~~a~~~~----------~~~~v~vSS~  167 (200)
                       .++|+||||||...       +              +...+++|+.+++.+.+++.+..          ..++|++||.
T Consensus        82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~  161 (267)
T TIGR02685        82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA  161 (267)
T ss_pred             cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence             35899999999532       1              22458999999999888764321          2368888885


Q ss_pred             ccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          168 DFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       168 ~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ....+.+....|+.+|++++.+++..
T Consensus       162 ~~~~~~~~~~~Y~asK~a~~~~~~~l  187 (267)
T TIGR02685       162 MTDQPLLGFTMYTMAKHALEGLTRSA  187 (267)
T ss_pred             hccCCCcccchhHHHHHHHHHHHHHH
Confidence            44445566789999999999998864

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.74  E-value=3e-17  Score=128.47  Aligned_cols=136  Identities=21%  Similarity=0.238  Sum_probs=102.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      |+++||||+|+||.+++++|+++|++|+++.|+.....+      .....++.++.+|++|++++.++++       .+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            579999999999999999999999999998884222111      0113468899999999988877664       489


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +||||+|...          .+...+++|+.++..+++.+    ++.+.++||++||.....+......|+.+|.+.+.+
T Consensus        81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~sk~a~~~~  160 (242)
T TIGR01829        81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQFGQTNYSAAKAGMIGF  160 (242)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCcchhHHHHHHHHHH
Confidence            9999998642          22445788999988755554    555677999999854333445567899999988887


Q ss_pred             HHh
Q 029008          190 LLA  192 (200)
Q Consensus       190 ~~~  192 (200)
                      ++.
T Consensus       161 ~~~  163 (242)
T TIGR01829       161 TKA  163 (242)
T ss_pred             HHH
Confidence            775

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK05855 short chain dehydrogenase; Validated

Probab=99.74  E-value=2.3e-17  Score=144.13  Aligned_cols=139  Identities=14%  Similarity=0.068  Sum_probs=108.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ..++++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|++.++++++       .+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            45799999999999999999999999999999997543211     1113468899999999999888775       37


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |++|||||...          .+...+++|+.|+.++.+++.    +.+ .++||++||...-.+.+....|+.+|++++
T Consensus       394 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa~~  473 (582)
T PRK05855        394 DIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSLPAYATSKAAVL  473 (582)
T ss_pred             cEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCCCcHHHHHHHHHH
Confidence            99999999642          234567899999998888753    333 358999999543344556789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       474 ~~~~~l  479 (582)
T PRK05855        474 MLSECL  479 (582)
T ss_pred             HHHHHH
Confidence            988763

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.73  E-value=3.1e-17  Score=131.34  Aligned_cols=139  Identities=9%  Similarity=-0.013  Sum_probs=105.3

Q ss_pred             CCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCC--ccccc--CCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRS--SLRDS--WANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||+  ++||.+++++|+++|++|+++.|+...  ..+..  ......++++|++|+++++++++       .
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   88 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGK   88 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            46899999997  899999999999999999988775321  11111  11235678999999999988764       4


Q ss_pred             CCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||||...              .++..+++|+.+++.+++++.+.  +.+++|++||.....+.+....|+.+|++
T Consensus        89 iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~p~~~~Y~asKaa  168 (272)
T PRK08159         89 LDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVMPHYNVMGVAKAA  168 (272)
T ss_pred             CcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCCCcchhhhhHHHH
Confidence            799999998642              23457899999999999887653  23589999985433444556789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+++..
T Consensus       169 l~~l~~~l  176 (272)
T PRK08159        169 LEASVKYL  176 (272)
T ss_pred             HHHHHHHH
Confidence            99998864

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.73  E-value=4.3e-17  Score=136.57  Aligned_cols=136  Identities=16%  Similarity=0.081  Sum_probs=102.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc--CCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS--WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.++..+..  ...++..+.+|++|++++.+.+.++|++|||||.
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi  255 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHGI  255 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCCc
Confidence            45789999999999999999999999999999998764421111  1224678899999999999999999999999986


Q ss_pred             CC-------CCcccchhhHHHHHHHHHHHHH----cC----CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          132 FG-------SNSYMYKINGTANINAIRAASE----KG----VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       132 ~~-------~~~~~~~~n~~~~~~~~~~a~~----~~----~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ..       .++..+++|+.++.++++++.+    .+    ...+|++|++  +........|++||++++.+..
T Consensus       256 ~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa--~~~~~~~~~Y~ASKaAl~~l~~  328 (406)
T PRK07424        256 NVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEA--EVNPAFSPLYELSKRALGDLVT  328 (406)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccc--cccCCCchHHHHHHHHHHHHHH
Confidence            42       2356789999999999888743    22    1235555543  2222234579999999988643

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.73  E-value=4.7e-17  Score=129.27  Aligned_cols=139  Identities=12%  Similarity=0.043  Sum_probs=105.3

Q ss_pred             CCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCc-c----cc--cCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           55 PSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS-L----RD--SWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        55 ~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~----~~--~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ++|+++||||+  ++||.+++++|+++|++|++..|+.+.. .    ..  ....++.++.+|++|+++++++++     
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            56899999986  7999999999999999998887653321 0    00  012346788999999999987764     


Q ss_pred             --CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 --GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 --~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                        .+|++|||+|...              .++..+++|+.+++.+.+++.+.  ..++||++||.....+.+....|+.+
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~Y~as  164 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAIPNYNVMGVA  164 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCCcccchhhHH
Confidence              4899999999531              13557899999999888876432  12589999995433445566789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+.+..
T Consensus       165 Kaal~~l~~~l  175 (258)
T PRK07370        165 KAALEASVRYL  175 (258)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.73  E-value=3.3e-17  Score=129.24  Aligned_cols=140  Identities=14%  Similarity=0.086  Sum_probs=110.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .-.++.||||||++++|+.++.+++++|.++.+.+.+.+...+    .....++..+.+|++|.+++.+..+       .
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            3468899999999999999999999999999999988765322    1111368999999999998887664       5


Q ss_pred             CCEEEEccccCCC----------CcccchhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~----a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||....          -+..+++|+.+.+...++    +.+..-++||.++|..+-.+......|++||+++.
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~~YcaSK~a~v  194 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKFAAV  194 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccchhhhhhHHHHH
Confidence            8999999996431          145789998888765544    55656679999999655556667789999999998


Q ss_pred             HHHHh
Q 029008          188 SPLLA  192 (200)
Q Consensus       188 ~~~~~  192 (200)
                      .+-++
T Consensus       195 Gfhes  199 (300)
T KOG1201|consen  195 GFHES  199 (300)
T ss_pred             HHHHH
Confidence            77665

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.73  E-value=6.9e-17  Score=125.33  Aligned_cols=137  Identities=15%  Similarity=0.069  Sum_probs=104.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-----CCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d~vi~~ag  130 (200)
                      |++++||||+|+||.+++++|+++|++|++++|+.+...+ ....+++++.+|++|.+.++++++     .+|++||++|
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag   79 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAA-LQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAG   79 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHH-HHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCC
Confidence            4789999999999999999999999999999988654221 112356789999999999888642     4899999998


Q ss_pred             cCC------------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccc--cCcCC-cCCcchhhhHHhhHHHHHh
Q 029008          131 GFG------------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAAD--FGVAN-YLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       131 ~~~------------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~--~~~~~-~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ...            +++..+++|+.++.++++++.+.   ..+++|++||..  ++... .+...|+.+|.+.+.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~  159 (222)
T PRK06953         80 VYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATGTTGWLYRASKAALNDALRA  159 (222)
T ss_pred             cccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccCCCccccHHhHHHHHHHHHH
Confidence            652            12457899999999999888642   235799998842  33222 2224699999999999887


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      +
T Consensus       160 ~  160 (222)
T PRK06953        160 A  160 (222)
T ss_pred             H
Confidence            5

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.73  E-value=7.4e-17  Score=123.12  Aligned_cols=124  Identities=18%  Similarity=0.099  Sum_probs=100.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEccccCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVGGFG  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag~~~  133 (200)
                      |+++||||+|+||.+++++|.++ ++|++++|+..            .+++|++|+++++++++   ++|++|||+|...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~------------~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG------------DVQVDITDPASIRALFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC------------ceEecCCChHHHHHHHHhcCCCCEEEECCCCCC
Confidence            47999999999999999999999 99999988642            36789999999988876   6899999998532


Q ss_pred             ----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          134 ----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                .+...+++|+.++.++++++.+.  +..+|+++||.....+.+....|+.+|++.+.+++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~Y~~sK~a~~~~~~~l  139 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIPGGASAATVNGALEGFVKAA  139 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCCCchHHHHHHHHHHHHHHHH
Confidence                      23455789999999999887653  3357999998543344456678999999999988753

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.73  E-value=3.5e-17  Score=128.09  Aligned_cols=135  Identities=17%  Similarity=0.148  Sum_probs=103.2

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|++++.++++       .+|++
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l   80 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV   80 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5899999999999999999999999998876432111      1113468899999999998887664       47999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~-----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      |||+|...          +++..+++|+.+++++++++.     +.+.++||++||.....+.+....|+.+|++.+.+.
T Consensus        81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~a~~~~~  160 (239)
T TIGR01831        81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLIGAT  160 (239)
T ss_pred             EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCCCcchHHHHHHHHHHH
Confidence            99998542          234568899999998888652     234568999999543334456678999999998887


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       161 ~~l  163 (239)
T TIGR01831       161 KAL  163 (239)
T ss_pred             HHH
Confidence            753

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.73  E-value=2.9e-17  Score=146.03  Aligned_cols=140  Identities=14%  Similarity=0.093  Sum_probs=109.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|.++++++++       +
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  448 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGH  448 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999999999998644211     1113468899999999999988776       5


Q ss_pred             CCEEEEccccCC------------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||||...            .++..+++|+.++.++++++    ++.+.++||++||...-.+.+....|+.+|++
T Consensus       449 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a  528 (657)
T PRK07201        449 VDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPRFSAYVASKAA  528 (657)
T ss_pred             CCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCcchHHHHHHH
Confidence            899999999531            12356789999998876665    44566799999995322334456789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+++..
T Consensus       529 ~~~~~~~l  536 (657)
T PRK07201        529 LDAFSDVA  536 (657)
T ss_pred             HHHHHHHH
Confidence            99988763

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.73  E-value=5.1e-17  Score=129.41  Aligned_cols=139  Identities=11%  Similarity=0.015  Sum_probs=103.7

Q ss_pred             CCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCC--cccc--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRS--SLRD--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||++  +||.++++.|+++|++|++.+|+...  ..+.  .....+.++.+|++|+++++++++       .
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            468999999985  99999999999999999988886311  1111  112346788999999999998764       4


Q ss_pred             CCEEEEccccCC---------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG---------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~---------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      +|++|||||...               .++..+++|+.+.+.+.+++...  ..++||++||.....+.+....|+++|+
T Consensus        85 iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~~~~~~Y~asKa  164 (262)
T PRK07984         85 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKA  164 (262)
T ss_pred             CCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCcchhHHHHH
Confidence            799999998532               12345688999988888776432  2258999998644444455678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+++..
T Consensus       165 al~~l~~~l  173 (262)
T PRK07984        165 SLEANVRYM  173 (262)
T ss_pred             HHHHHHHHH
Confidence            999998863

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.73  E-value=6.9e-17  Score=126.54  Aligned_cols=139  Identities=15%  Similarity=0.199  Sum_probs=103.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCC--HHHHHHHh-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLS--SDSWKEAL-------  119 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d--~~~~~~~~-------  119 (200)
                      ++++++||||+|++|.+++++|+++|++|++++|+.+....      ......+.++.+|+.|  .+++.+++       
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999998754211      0112356778899975  34444433       


Q ss_pred             -cCCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          120 -DGVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       120 -~~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                       ..+|+||||||...           ++...+++|+.+++++++++.+    .+..++|++||.....+.+....|+.+|
T Consensus        85 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK  164 (239)
T PRK08703         85 QGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGFGASK  164 (239)
T ss_pred             CCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCCCccchHHhH
Confidence             45899999999532           1223579999999988887743    3456999999854334445567899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       165 aa~~~~~~~l  174 (239)
T PRK08703        165 AALNYLCKVA  174 (239)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.73  E-value=5.4e-17  Score=120.37  Aligned_cols=136  Identities=18%  Similarity=0.144  Sum_probs=106.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccc--------cCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD--------SWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ++++||||+|++|.+++++|+++|+ .|+++.|+.......        ....++.++.+|+++++.++++++       
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG   80 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999996 678777765432110        113467889999999988887654       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      .+|.+||++|...          .++..+++|+.++.++++++.+.+.+++|++||.....+......|+.+|.+.+.++
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~~~~~~  160 (180)
T smart00822       81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGNPGQANYAAANAFLDALA  160 (180)
T ss_pred             CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCCCCchhhHHHHHHHHHHH
Confidence            3699999998532          224568899999999999998878889999998543334456678999999999998


Q ss_pred             Hh
Q 029008          191 LA  192 (200)
Q Consensus       191 ~~  192 (200)
                      +.
T Consensus       161 ~~  162 (180)
T smart00822      161 AH  162 (180)
T ss_pred             HH
Confidence            65

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.72  E-value=6.4e-17  Score=129.66  Aligned_cols=136  Identities=18%  Similarity=0.105  Sum_probs=102.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc------CCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD------GVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~------~~d  123 (200)
                      |+|+++|||+ |+||.+++++|. +|++|++++|+.+...+   .  ....++.++.+|++|+++++++++      .+|
T Consensus         1 ~~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          1 MKEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            4678999998 799999999996 89999999997543211   1  112367889999999999887764      489


Q ss_pred             EEEEccccCC---CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCC-------------------------
Q 029008          124 AVISCVGGFG---SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVAN-------------------------  173 (200)
Q Consensus       124 ~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~-------------------------  173 (200)
                      ++|||||...   +++..+++|+.+++++++++.+.  ..+++|++||.......                         
T Consensus        79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
T PRK06940         79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPFLQ  158 (275)
T ss_pred             EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccccccc
Confidence            9999999643   45678999999999999887553  12457788874321110                         


Q ss_pred             -----cCCcchhhhHHhhHHHHHh
Q 029008          174 -----YLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       174 -----~~~~~Y~~sK~~~E~~~~~  192 (200)
                           .+...|+.||++.+.+.+.
T Consensus       159 ~~~~~~~~~~Y~asKaa~~~~~~~  182 (275)
T PRK06940        159 PDAIEDSLHAYQIAKRANALRVMA  182 (275)
T ss_pred             ccccCCccchhHHHHHHHHHHHHH
Confidence                 1356899999999988875

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.72  E-value=1.8e-16  Score=125.66  Aligned_cols=140  Identities=15%  Similarity=0.058  Sum_probs=104.6

Q ss_pred             CCCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCC---------Cc-c----c--ccCCCCeeEEEccCCCHHHH
Q 029008           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGR---------SS-L----R--DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        54 ~~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~---------~~-~----~--~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      .++|+++||||+|  +||.+++++|+++|++|+++.|...         .. .    +  .....++.++.+|++|.+++
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i   83 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP   83 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            4678999999984  8999999999999999988754311         00 0    0  11124678899999999998


Q ss_pred             HHHhc-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCc
Q 029008          116 KEALD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANY  174 (200)
Q Consensus       116 ~~~~~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~  174 (200)
                      +++++       .+|++|||+|...          .++..+++|+.+.+.+.+++    ++.+.++||++||.....+.+
T Consensus        84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~  163 (256)
T PRK12859         84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGPMV  163 (256)
T ss_pred             HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCCCCC
Confidence            87764       3799999998532          23446889999998775544    334456999999964444455


Q ss_pred             CCcchhhhHHhhHHHHHhh
Q 029008          175 LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +...|+.+|++++.++++.
T Consensus       164 ~~~~Y~~sK~a~~~l~~~l  182 (256)
T PRK12859        164 GELAYAATKGAIDALTSSL  182 (256)
T ss_pred             CchHHHHHHHHHHHHHHHH
Confidence            6789999999999998764

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.72  E-value=4.6e-17  Score=127.75  Aligned_cols=137  Identities=16%  Similarity=0.103  Sum_probs=100.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEee-cCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      |++++||||+|+||.+++++|+++|++|+++. |+.+...+     .....++.++.+|+.|+++++++++       .+
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i   80 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL   80 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            46899999999999999999999999998754 44322111     1112467889999999999988776       36


Q ss_pred             CEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc-------CCCEEEEEeccc--cCcCCcCCcchhhh
Q 029008          123 TAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK-------GVKRFVYISAAD--FGVANYLLQGYYEG  182 (200)
Q Consensus       123 d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~-------~~~~~v~vSS~~--~~~~~~~~~~Y~~s  182 (200)
                      |+|||++|...           .++..+++|+.++..+++++...       ..++||++||..  ++.+ .....|+.+
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~-~~~~~Y~~s  159 (247)
T PRK09730         81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAP-GEYVDYAAS  159 (247)
T ss_pred             CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCC-CcccchHhH
Confidence            89999999632           12356889999998877766432       135799999953  2322 223579999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++.|.+++..
T Consensus       160 K~~~~~~~~~l  170 (247)
T PRK09730        160 KGAIDTLTTGL  170 (247)
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.72  E-value=5.3e-17  Score=126.71  Aligned_cols=135  Identities=16%  Similarity=0.109  Sum_probs=103.5

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ++|||++|+||.+++++|+++|++|++++|+......      .....++.++.+|++|+++++++++       .+|+|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL   80 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            5899999999999999999999999999887532111      1112357899999999998888765       36999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ||++|...          .++..+++|+.++..+++.+.+    .+.++||++||...-...+....|+.+|.+.+.+++
T Consensus        81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~~~~y~~~k~a~~~~~~  160 (239)
T TIGR01830        81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAGQANYAASKAGVIGFTK  160 (239)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCCchhHHHHHHHHHHHH
Confidence            99999642          1245678999999999888864    355699999994322233456789999999998877


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       161 ~l  162 (239)
T TIGR01830       161 SL  162 (239)
T ss_pred             HH
Confidence            63

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.72  E-value=6e-17  Score=144.22  Aligned_cols=140  Identities=19%  Similarity=0.157  Sum_probs=106.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c----cCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D----SWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~----~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+....   .    .....+.++.+|++|++++.++++      
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~  491 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY  491 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            457899999999999999999999999999999997543211   0    012357789999999999988776      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcC-CCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKG-VKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                       ++|+||||||...          .++..+++|+.+.+.+.+.+    ++.+ .++||++||...-.+.+....|+.+|+
T Consensus       492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~~aY~aSKa  571 (676)
T TIGR02632       492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNASAYSAAKA  571 (676)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCCHHHHHHHH
Confidence             5899999999642          12456788988887766554    3333 358999999533334455689999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +.+.+++..
T Consensus       572 A~~~l~r~l  580 (676)
T TIGR02632       572 AEAHLARCL  580 (676)
T ss_pred             HHHHHHHHH
Confidence            999998864

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.72  E-value=5.7e-17  Score=132.68  Aligned_cols=139  Identities=14%  Similarity=0.122  Sum_probs=102.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccC-CCCeeEEEccCCC--HHHHHH---HhcC-
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSW-ANNVIWHQGNLLS--SDSWKE---ALDG-  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~-~~~~~~~~~Dl~d--~~~~~~---~~~~-  121 (200)
                      .++.++||||+|+||.+++++|+++|++|++++|+.++..+      ... ..++..+.+|+++  .+.+++   .+.+ 
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            46899999999999999999999999999999998654211      111 2357788899985  333333   3343 


Q ss_pred             -CCEEEEccccCCC------------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccc-cCcC-CcCCcchhhh
Q 029008          122 -VTAVISCVGGFGS------------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD-FGVA-NYLLQGYYEG  182 (200)
Q Consensus       122 -~d~vi~~ag~~~~------------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~-~~~~-~~~~~~Y~~s  182 (200)
                       +|++|||||....            ++..+++|+.++..+.+++.    +.+.++||++||.. +..+ .+....|++|
T Consensus       132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~p~~~~Y~aS  211 (320)
T PLN02780        132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDPLYAVYAAT  211 (320)
T ss_pred             CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCccchHHHHH
Confidence             5699999996421            13467999999998877764    45667999999943 2222 3556889999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+.+..
T Consensus       212 Kaal~~~~~~L  222 (320)
T PLN02780        212 KAYIDQFSRCL  222 (320)
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>PRK06484 short chain dehydrogenase; Validated

Probab=99.72  E-value=9.5e-17  Score=139.17  Aligned_cols=138  Identities=19%  Similarity=0.153  Sum_probs=108.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      .+|+++||||+++||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVL   83 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            56899999999999999999999999999999987654211  1113467789999999999887764       48999


Q ss_pred             EEccccCC------------CCcccchhhHHHHHHHHHHHHHc----CCC-EEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          126 ISCVGGFG------------SNSYMYKINGTANINAIRAASEK----GVK-RFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       126 i~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~~----~~~-~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |||||...            +++..+++|+.+++.+++++...    +.+ +||++||...-.+.+....|+.+|++.+.
T Consensus        84 i~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~~~Y~asKaal~~  163 (520)
T PRK06484         84 VNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPKRTAYSASKAAVIS  163 (520)
T ss_pred             EECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCCCchHHHHHHHHHH
Confidence            99998621            23457899999999888887543    333 89999995444444566789999999999


Q ss_pred             HHHh
Q 029008          189 PLLA  192 (200)
Q Consensus       189 ~~~~  192 (200)
                      +++.
T Consensus       164 l~~~  167 (520)
T PRK06484        164 LTRS  167 (520)
T ss_pred             HHHH
Confidence            8875

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=7.8e-17  Score=128.11  Aligned_cols=139  Identities=10%  Similarity=-0.058  Sum_probs=103.3

Q ss_pred             CCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCCc--cccc--CCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSS--LRDS--WANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~--~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||++  +||.++++.|+++|++|++.+|+....  ....  ......++++|++|+++++++++       .
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS   86 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            568999999997  899999999999999999988763210  1111  11223467899999999887775       4


Q ss_pred             CCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||+|...              .++..+++|+.+.+.+++++...  ..++||++||.....+.+....|+.+|++
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  166 (260)
T PRK06603         87 FDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIPNYNVMGVAKAA  166 (260)
T ss_pred             ccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCCCcccchhhHHHH
Confidence            899999998532              12446899999999888876432  12589999995433344556789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       167 l~~l~~~l  174 (260)
T PRK06603        167 LEASVKYL  174 (260)
T ss_pred             HHHHHHHH
Confidence            99988863

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.71  E-value=5e-17  Score=128.74  Aligned_cols=140  Identities=16%  Similarity=0.191  Sum_probs=106.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCc-EEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+|+||..++++|+++|++ |++++|+.+....     .....++.++.+|++|++++.++++       
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35689999999999999999999999999 9999887543211     0113467789999999998887765       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      ++|++|||+|...          .++..+++|+.+..++++++.+.    + .+++|++||...-.+.+....|+.+|.+
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a  163 (260)
T PRK06198         84 RLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPFLAAYCASKGA  163 (260)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCCcchhHHHHHH
Confidence            5799999998642          12346789999999988887442    2 3579999985322234456789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +|.+++..
T Consensus       164 ~~~~~~~~  171 (260)
T PRK06198        164 LATLTRNA  171 (260)
T ss_pred             HHHHHHHH
Confidence            99998864

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.71  E-value=1e-16  Score=128.06  Aligned_cols=136  Identities=14%  Similarity=0.018  Sum_probs=102.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      |+++||||+|+||.+++++|+++|++|++++|+.+....      ......+.++.+|++|+++++++++       ++|
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            479999999999999999999999999999887543111      0111234567899999988876664       479


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----c-CCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----K-GVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~-~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||+|...          .++..+++|+.+++.+++++..    . ..++||++||.....+.+....|+.+|++.+.
T Consensus        81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~  160 (272)
T PRK07832         81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLRG  160 (272)
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCCCcchHHHHHHHHH
Confidence            9999998532          1245689999999999988642    2 24689999995433344556789999999888


Q ss_pred             HHHh
Q 029008          189 PLLA  192 (200)
Q Consensus       189 ~~~~  192 (200)
                      +.+.
T Consensus       161 ~~~~  164 (272)
T PRK07832        161 LSEV  164 (272)
T ss_pred             HHHH
Confidence            7764

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=1.2e-16  Score=127.20  Aligned_cols=139  Identities=14%  Similarity=0.059  Sum_probs=101.4

Q ss_pred             CCCeEEEEcc--CchhHHHHHHHHHHCCCcEEEeecCCCCc--cccc--CCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSS--LRDS--WANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~--~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||  +++||.+++++|+++|++|++..|.....  .+..  .......+++|++|+++++++++       +
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG   84 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            5689999997  67999999999999999999887653211  1111  11235678999999999988764       5


Q ss_pred             CCEEEEccccCCC---------------CcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          122 VTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       122 ~d~vi~~ag~~~~---------------~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                      +|++|||||....               ++..+++|+.+.+.+.+++...   +.++||++||...-.+.+....|+.+|
T Consensus        85 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~~~~~Y~asK  164 (261)
T PRK08690         85 LDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVMGMAK  164 (261)
T ss_pred             CcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCCCcccchhHH
Confidence            8999999996421               1234678888888777765432   235899999854333445667899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+.+..
T Consensus       165 aal~~l~~~l  174 (261)
T PRK08690        165 ASLEAGIRFT  174 (261)
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>PRK08324 short chain dehydrogenase; Validated

Probab=99.71  E-value=9.3e-17  Score=143.35  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccC--CCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSW--ANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~--~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ..+++++||||+|+||.++++.|+++|++|++++|+.+....  ...  ..++.++.+|++|+++++++++       ++
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i  499 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV  499 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            357899999999999999999999999999999998654211  001  1378899999999998887765       58


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCC-CEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGV-KRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~-~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |+||||+|...          .++..+++|+.++..+++++.    +++. ++||++||...-.+.+....|+.+|++.+
T Consensus       500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~~~~Y~asKaa~~  579 (681)
T PRK08324        500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYGAAKAAEL  579 (681)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCCcHHHHHHHHHHH
Confidence            99999999542          234568999999999977764    4454 68999999543334456678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       580 ~l~~~l  585 (681)
T PRK08324        580 HLVRQL  585 (681)
T ss_pred             HHHHHH
Confidence            998874

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=1.4e-16  Score=126.62  Aligned_cols=139  Identities=12%  Similarity=0.037  Sum_probs=102.9

Q ss_pred             CCCeEEEEcc--CchhHHHHHHHHHHCCCcEEEeecCCCC--cccc--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRS--SLRD--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa--~G~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||  +++||.+++++|+++|++|++++|....  ..+.  .......++.+|++|+++++++++       .
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            4689999996  6899999999999999999988654211  1110  111233578899999999987764       4


Q ss_pred             CCEEEEccccCC---------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG---------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~---------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      +|++|||||...               .++..+++|+.+.+.+.+++...  +.++||++||.....+.+....|+.+|+
T Consensus        85 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~~~~~Y~asKa  164 (260)
T PRK06997         85 LDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVPNYNTMGLAKA  164 (260)
T ss_pred             CcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCCCcchHHHHHH
Confidence            899999998632               12345789999999888887553  2358999998543344455678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       165 al~~l~~~l  173 (260)
T PRK06997        165 SLEASVRYL  173 (260)
T ss_pred             HHHHHHHHH
Confidence            999998864

>PRK05599 hypothetical protein; Provisional

Probab=99.71  E-value=1.9e-16  Score=124.86  Aligned_cols=136  Identities=15%  Similarity=0.094  Sum_probs=100.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      |+++||||+++||.+++++|. +|++|++++|+.++..+      ......+.++.+|++|+++++++++       ++|
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   79 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS   79 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence            579999999999999999998 59999999997654211      1112247889999999988887654       589


Q ss_pred             EEEEccccCCCC----------cccchhhHHHHHHHHHH----HHHcC-CCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFGSN----------SYMYKINGTANINAIRA----ASEKG-VKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~~~----------~~~~~~n~~~~~~~~~~----a~~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||+|.....          ...+++|+.+...+++.    +.+.+ .++||++||.....+.+....|+.+|++.+.
T Consensus        80 ~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~  159 (246)
T PRK05599         80 LAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRANYVYGSTKAGLDA  159 (246)
T ss_pred             EEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcCCcchhhHHHHHHH
Confidence            999999964311          13356787777755444    34443 4689999996444445567789999999998


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       160 ~~~~l  164 (246)
T PRK05599        160 FCQGL  164 (246)
T ss_pred             HHHHH
Confidence            88763

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.71  E-value=7.7e-17  Score=137.56  Aligned_cols=140  Identities=16%  Similarity=0.078  Sum_probs=107.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-cc-cCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-RD-SWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~-~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+++++||||+|+||..++++|+++|++|+++++...... .. ....+..++.+|++|+++++++++       ++|+
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            46789999999999999999999999999999988533211 11 011234688999999998887665       5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC----CCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEKG----VKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~----~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      ||||+|...          .++..+++|+.+++++.+++....    .++||++||...-.+......|+.+|++.+.++
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~~~~Y~asKaal~~~~  367 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRGQTNYAASKAGVIGLV  367 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCChHHHHHHHHHHHHH
Confidence            999999643          234568899999999999987643    268999998533334456688999999988888


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       368 ~~l  370 (450)
T PRK08261        368 QAL  370 (450)
T ss_pred             HHH
Confidence            764

>PLN00016 RNA-binding protein; Provisional

Probab=99.70  E-value=1.6e-16  Score=132.80  Aligned_cols=127  Identities=19%  Similarity=0.238  Sum_probs=95.6

Q ss_pred             CCCCCeEEEE----ccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----------ccCCCCeeEEEccCCCHHHHHHH
Q 029008           53 PPPSEKLLVL----GGNGFVGSHICREALDRGLTVASLSRSGRSSLR----------DSWANNVIWHQGNLLSSDSWKEA  118 (200)
Q Consensus        53 ~~~~~~ilVt----Ga~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~~~~Dl~d~~~~~~~  118 (200)
                      ..++++|+||    ||+|+||.+|+++|+++||+|++++|+......          .....+++++.+|+.|   +.++
T Consensus        49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~  125 (378)
T PLN00016         49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSK  125 (378)
T ss_pred             ccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhh
Confidence            3466899999    999999999999999999999999998653111          0112358899999876   4444


Q ss_pred             h--cCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc-C------CcchhhhHHhhHH
Q 029008          119 L--DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY-L------LQGYYEGKDSNLS  188 (200)
Q Consensus       119 ~--~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~~-~------~~~Y~~sK~~~E~  188 (200)
                      +  .++|+|||+++.          +..++.+++++|++.|+++||++|| ..|+.... +      ..++. +|..+|+
T Consensus       126 ~~~~~~d~Vi~~~~~----------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~~-sK~~~E~  194 (378)
T PLN00016        126 VAGAGFDVVYDNNGK----------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPKA-GHLEVEA  194 (378)
T ss_pred             hccCCccEEEeCCCC----------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCcc-hHHHHHH
Confidence            4  469999998763          2456788999999999999999999 45664321 1      12233 8999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      ++++.
T Consensus       195 ~l~~~  199 (378)
T PLN00016        195 YLQKL  199 (378)
T ss_pred             HHHHc
Confidence            98875

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.70  E-value=3e-16  Score=136.88  Aligned_cols=113  Identities=18%  Similarity=0.229  Sum_probs=90.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCCcc--c----c--------------------cCCCCeeEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSL--R----D--------------------SWANNVIWH  105 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~--~----~--------------------~~~~~~~~~  105 (200)
                      .+++|+|||||||||++|+++|++.+.   +|+++.|......  +    .                    ....++.++
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v  197 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV  197 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence            478999999999999999999998764   6799999754310  0    0                    013468999


Q ss_pred             EccCCCH------HHHHHHhcCCCEEEEccccCC---CCcccchhhHHHHHHHHHHHHHc-CCCEEEEEecc
Q 029008          106 QGNLLSS------DSWKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEK-GVKRFVYISAA  167 (200)
Q Consensus       106 ~~Dl~d~------~~~~~~~~~~d~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~  167 (200)
                      .+|++++      +.++.+.+++|+|||+|+...   +++..+++|+.++.+++++|++. +.++||++||.
T Consensus       198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTa  269 (605)
T PLN02503        198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTA  269 (605)
T ss_pred             EeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCc
Confidence            9999986      466777788999999999754   34567899999999999999886 46899999994

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.69  E-value=2.3e-16  Score=128.82  Aligned_cols=113  Identities=12%  Similarity=0.059  Sum_probs=87.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++++++||||+++||.+++++|+++| ++|++++|+.++..+   .  .....+.++.+|++|.++++++++       +
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   81 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP   81 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            56799999999999999999999999 999999987643211   1  112467889999999998887653       4


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHH----HcC--CCEEEEEecc
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKG--VKRFVYISAA  167 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~--~~~~v~vSS~  167 (200)
                      +|++|||||...           .++..+++|+.+++.+.+.+.    +.+  .++||++||.
T Consensus        82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~  144 (314)
T TIGR01289        82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSI  144 (314)
T ss_pred             CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecC
Confidence            899999999632           123468999999988866653    332  3699999994

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.69  E-value=2.6e-16  Score=124.80  Aligned_cols=138  Identities=13%  Similarity=0.035  Sum_probs=102.7

Q ss_pred             CCCeEEEEcc--CchhHHHHHHHHHHCCCcEEEeecCCCC-ccc---ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRS-SLR---DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa--~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||  +++||.+++++|+++|++|++++|+... ..+   .....++.++.+|++|+++++++++       +
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~   85 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG   85 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999  8999999999999999999999876421 111   1112357789999999998887654       5


Q ss_pred             CCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||||...              .+...+++|+.+++.+.+++...  ..++||++|+.. ....+....|+.||++
T Consensus        86 iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~-~~~~~~~~~Y~asKaa  164 (256)
T PRK07889         86 LDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDA-TVAWPAYDWMGVAKAA  164 (256)
T ss_pred             CcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecc-cccCCccchhHHHHHH
Confidence            899999999642              11235789999999888877543  225899998642 2223345678999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       165 l~~l~~~l  172 (256)
T PRK07889        165 LESTNRYL  172 (256)
T ss_pred             HHHHHHHH
Confidence            99988863

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.69  E-value=4.2e-16  Score=126.79  Aligned_cols=139  Identities=18%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC---------ccc------ccCCCCeeEEEccCCCHHHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS---------SLR------DSWANNVIWHQGNLLSSDSWKEA  118 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~------~~~~~~~~~~~~Dl~d~~~~~~~  118 (200)
                      ..+|+++||||+++||.+++++|++.|++|++++|+...         ..+      .....++.++.+|++|+++++++
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   85 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL   85 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence            357899999999999999999999999999999987421         000      01123577899999999998877


Q ss_pred             hc-------CCCEEEEcc-ccC------C--------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEecccc--C
Q 029008          119 LD-------GVTAVISCV-GGF------G--------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADF--G  170 (200)
Q Consensus       119 ~~-------~~d~vi~~a-g~~------~--------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~--~  170 (200)
                      ++       .+|++|||+ |..      .        .+...+++|+.+.+.+.+++..    .+..+||++||...  .
T Consensus        86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~  165 (305)
T PRK08303         86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYN  165 (305)
T ss_pred             HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccccc
Confidence            64       489999999 631      1        1234568899998887777643    33468999998432  2


Q ss_pred             c-CCcCCcchhhhHHhhHHHHHh
Q 029008          171 V-ANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       171 ~-~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      . +......|+.+|+++..+.+.
T Consensus       166 ~~~~~~~~~Y~asKaal~~lt~~  188 (305)
T PRK08303        166 ATHYRLSVFYDLAKTSVNRLAFS  188 (305)
T ss_pred             CcCCCCcchhHHHHHHHHHHHHH
Confidence            1 122356799999999998875

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.69  E-value=5.8e-16  Score=120.95  Aligned_cols=134  Identities=20%  Similarity=0.214  Sum_probs=98.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh---cCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL---DGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vi~~ag~  131 (200)
                      |+++||||+|+||.+++++|+++|  +.|....|+....   ....++.++++|++|.++++++.   .++|++|||+|.
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~   77 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD---FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGM   77 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc---cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCcc
Confidence            589999999999999999999986  4555555544332   12357889999999998877754   468999999996


Q ss_pred             CCC----------------CcccchhhHHHHHHHHHHHHH----cCCCEEEEEecccc---CcCCcCCcchhhhHHhhHH
Q 029008          132 FGS----------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADF---GVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       132 ~~~----------------~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~---~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ...                +...+++|+.+...+.+.+..    .+.++++++||...   ..+.++...|+.+|++++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~~~~~~~~Y~asK~a~~~  157 (235)
T PRK09009         78 LHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDNRLGGWYSYRASKAALNM  157 (235)
T ss_pred             ccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccCCCCCcchhhhhHHHHHH
Confidence            421                123578899999877777644    33468999987321   1122345689999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       158 ~~~~l  162 (235)
T PRK09009        158 FLKTL  162 (235)
T ss_pred             HHHHH
Confidence            88863

>PRK12320 hypothetical protein; Provisional

Probab=99.68  E-value=7.1e-16  Score=136.16  Aligned_cols=120  Identities=21%  Similarity=0.210  Sum_probs=95.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~  136 (200)
                      |+|+||||+||||++++++|+++|++|++++|.....    ...+++++.+|++|+. +.+++.++|+|||+++...  .
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~----~~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa~~~--~   73 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA----LDPRVDYVCASLRNPV-LQELAGEADAVIHLAPVDT--S   73 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc----ccCCceEEEccCCCHH-HHHHhcCCCEEEEcCccCc--c
Confidence            4799999999999999999999999999999865431    1247889999999985 7888889999999998642  1


Q ss_pred             ccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          137 YMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       137 ~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ....+|+.++.+++++|++.|+ ++|++||. +|.+    ..|.    ..|+++.++
T Consensus        74 ~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~-~G~~----~~~~----~aE~ll~~~  120 (699)
T PRK12320         74 APGGVGITGLAHVANAAARAGA-RLLFVSQA-AGRP----ELYR----QAETLVSTG  120 (699)
T ss_pred             chhhHHHHHHHHHHHHHHHcCC-eEEEEECC-CCCC----cccc----HHHHHHHhc
Confidence            2346899999999999999997 79999985 3322    1232    467777654

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.68  E-value=1e-16  Score=126.95  Aligned_cols=136  Identities=17%  Similarity=0.119  Sum_probs=101.9

Q ss_pred             eEEEEccCchhHHHHHHHHHH----CCCcEEEeecCCCCccc---c--c--CCCCeeEEEccCCCHHHHHHHhcC-----
Q 029008           58 KLLVLGGNGFVGSHICREALD----RGLTVASLSRSGRSSLR---D--S--WANNVIWHQGNLLSSDSWKEALDG-----  121 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~---~--~--~~~~~~~~~~Dl~d~~~~~~~~~~-----  121 (200)
                      .++||||+++||.+++++|++    +|++|+++.|+.+...+   .  .  ...++.++.+|++|+++++++++.     
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            589999999999999999997    79999999997653211   0  0  123688899999999988876642     


Q ss_pred             ------CCEEEEccccCCC-------------CcccchhhHHHHHHHHHHHHHc-----C-CCEEEEEeccccCcCCcCC
Q 029008          122 ------VTAVISCVGGFGS-------------NSYMYKINGTANINAIRAASEK-----G-VKRFVYISAADFGVANYLL  176 (200)
Q Consensus       122 ------~d~vi~~ag~~~~-------------~~~~~~~n~~~~~~~~~~a~~~-----~-~~~~v~vSS~~~~~~~~~~  176 (200)
                            .|++|||||....             ++..+++|+.+++.+.+.+.+.     + .++||++||...-.+.+..
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~~~  161 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKGW  161 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCCCc
Confidence                  2599999985321             1246789999998877766432     2 2589999995433444556


Q ss_pred             cchhhhHHhhHHHHHhh
Q 029008          177 QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       177 ~~Y~~sK~~~E~~~~~~  193 (200)
                      ..|+.+|++.+.+++..
T Consensus       162 ~~Y~asKaal~~l~~~l  178 (256)
T TIGR01500       162 ALYCAGKAARDMLFQVL  178 (256)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            78999999999998863

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.68  E-value=1.9e-16  Score=117.53  Aligned_cols=135  Identities=15%  Similarity=0.135  Sum_probs=107.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccC--CCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSW--ANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~--~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+.+..+||||+++||+++++.|.+.|++|.+.+++.....+  ...  ..+-..+.+|+.++++++..++       .+
T Consensus        12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~p   91 (256)
T KOG1200|consen   12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTP   91 (256)
T ss_pred             HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCC
Confidence            466899999999999999999999999999999988664222  111  2356788999999998887665       47


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc------CCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK------GVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~------~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++++||||...          +|+..+.+|+.|++.+-+++.+.      +.-+||++||.+.-..+...+.|.++|..+
T Consensus        92 svlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtnYAAsK~Gv  171 (256)
T KOG1200|consen   92 SVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAASKGGV  171 (256)
T ss_pred             cEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchhhhhhcCce
Confidence            99999999753          67888999999999988887543      223899999987777778888999988754


Q ss_pred             HH
Q 029008          187 LS  188 (200)
Q Consensus       187 E~  188 (200)
                      -.
T Consensus       172 Ig  173 (256)
T KOG1200|consen  172 IG  173 (256)
T ss_pred             ee
Confidence            43

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.68  E-value=9.9e-16  Score=122.26  Aligned_cols=142  Identities=15%  Similarity=0.057  Sum_probs=107.7

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--------ccCCCCeeEEEccCCCHHHHHHHhc---
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALD---  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~---  120 (200)
                      ....+|+++|||++.+||++++++|++.|++|++.+|+.+...+        .....++..+.+|+++.++++++++   
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~   83 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV   83 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999998765211        1113468899999998877666543   


Q ss_pred             -----CCCEEEEccccCC-----------CCcccchhhHHH-HHHHHHHHH----HcCCCEEEEEeccccCcCCcCC-cc
Q 029008          121 -----GVTAVISCVGGFG-----------SNSYMYKINGTA-NINAIRAAS----EKGVKRFVYISAADFGVANYLL-QG  178 (200)
Q Consensus       121 -----~~d~vi~~ag~~~-----------~~~~~~~~n~~~-~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~-~~  178 (200)
                           ++|++|||||...           .|+..+++|+.| .+.+.+++.    +.+...++++||..+.....+. ..
T Consensus        84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~~~~  163 (270)
T KOG0725|consen   84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGVA  163 (270)
T ss_pred             HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccc
Confidence                 5899999999532           346778999995 555555543    3345689999986544443333 79


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |+.+|++++++.+..
T Consensus       164 Y~~sK~al~~ltr~l  178 (270)
T KOG0725|consen  164 YGVSKAALLQLTRSL  178 (270)
T ss_pred             chhHHHHHHHHHHHH
Confidence            999999999999863

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.68  E-value=6.8e-16  Score=120.46  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=100.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc--------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD--------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~--------~  121 (200)
                      .+++++||||+++||.+++++|+++|++|+++.|+.+...+     .....++..+.+|+.|+++++++++        .
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            56899999999999999999999999999999997654211     1113457788999999998887653        5


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcC-CCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKG-VKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||+|...           .+...+++|+.+.+.+.+.+    .+.+ .++||++||.. +  .+....|+.+|++
T Consensus        84 iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~-~--~~~~~~Y~asKaa  160 (227)
T PRK08862         84 PDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHD-D--HQDLTGVESSNAL  160 (227)
T ss_pred             CCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCC-C--CCCcchhHHHHHH
Confidence            899999997421           11234567777777665554    3333 46899999842 2  2346789999999


Q ss_pred             hHHHHHh
Q 029008          186 NLSPLLA  192 (200)
Q Consensus       186 ~E~~~~~  192 (200)
                      ++.+.+.
T Consensus       161 l~~~~~~  167 (227)
T PRK08862        161 VSGFTHS  167 (227)
T ss_pred             HHHHHHH
Confidence            9998876

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.68  E-value=3.7e-16  Score=122.12  Aligned_cols=139  Identities=19%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ++++++||||+|+||.++++.|+++|++|++++|+.+.....    ....++.++.+|++|+++++++++       .+|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            568999999999999999999999999999999976532110    112368899999999988877654       469


Q ss_pred             EEEEccccCC--------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEecccc-CcCCcCCcchhhhHHhhHHHHHh
Q 029008          124 AVISCVGGFG--------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADF-GVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       124 ~vi~~ag~~~--------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~-~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      .+||++|...        ..+..+++|+.+...+++.+.+.  ..++||++||... ..+.++...|+.+|++.+.+++.
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~~Y~~sK~~~~~~~~~  163 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKASPDQLSYAVAKAGLAKAVEI  163 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCCCCchHHHHHHHHHHHHHHH
Confidence            9999998542        12345788889888888877553  2357999998532 22334557799999999887775


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       164 ~  164 (238)
T PRK05786        164 L  164 (238)
T ss_pred             H
Confidence            3

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.67  E-value=2.6e-16  Score=123.83  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=103.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+++++|||++|+||..+++.|+++|++|++++|+.++...     .....++.++.+|++|+++++++++       .+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46799999999999999999999999999999987643111     1113467889999999988876654       47


Q ss_pred             CEEEEccccCCC-------------------CcccchhhHHHHHHHHHHHH----Hc-CCCEEEEEeccccCcCCcCCcc
Q 029008          123 TAVISCVGGFGS-------------------NSYMYKINGTANINAIRAAS----EK-GVKRFVYISAADFGVANYLLQG  178 (200)
Q Consensus       123 d~vi~~ag~~~~-------------------~~~~~~~n~~~~~~~~~~a~----~~-~~~~~v~vSS~~~~~~~~~~~~  178 (200)
                      |+||||+|....                   +...+++|+.++..+.+.+.    +. ...+||++||.. ..+.++...
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~-~~~~~~~~~  162 (253)
T PRK08217         84 NGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIA-RAGNMGQTN  162 (253)
T ss_pred             CEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEcccc-ccCCCCCch
Confidence            999999985321                   12356789999987766543    22 234789998843 223456788


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |+.+|++.|.+++.+
T Consensus       163 Y~~sK~a~~~l~~~l  177 (253)
T PRK08217        163 YSASKAGVAAMTVTW  177 (253)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999998875

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=1.4e-16  Score=119.86  Aligned_cols=138  Identities=14%  Similarity=0.059  Sum_probs=107.6

Q ss_pred             CCCeEEEEccC-chhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--------CCCEE
Q 029008           55 PSEKLLVLGGN-GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--------~~d~v  125 (200)
                      ..|.|+|||++ |+||.++++++.++|+.|++..|+.++-.+.....++...+.|+++++++.....        .+|++
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            45789999865 9999999999999999999999998774443335678999999999998887653        37999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      |||||..=          +-+..|++|+.|..+.-++....   ..+.||++.|...-.+-+..+.|.+||+++-++.+.
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~~iYsAsKAAihay~~t  165 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFGSIYSASKAAIHAYART  165 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchhhhhhHHHHHHHHhhhh
Confidence            99999521          12567899999988777665422   245899999964334445567899999999888765

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.66  E-value=1.3e-15  Score=120.84  Aligned_cols=140  Identities=18%  Similarity=0.120  Sum_probs=111.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--cccC-CCCeeEEEccCCCHHHHHHHhc---------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSW-ANNVIWHQGNLLSSDSWKEALD---------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~-~~~~~~~~~Dl~d~~~~~~~~~---------  120 (200)
                      +...|.|+|||+..+.|..++++|.++|+.|++..-.++...  .... .++...++.|++++++++++.+         
T Consensus        26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED  105 (322)
T ss_pred             ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence            356789999999999999999999999999999885544321  1112 5678888999999999998765         


Q ss_pred             CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHH---HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS---EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~---~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +.-.||||||.+.           ++...+++|..|+..+.++..   +...+|+|++||.....+.+...+|+.||+++
T Consensus       106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~p~~g~Y~~SK~aV  185 (322)
T KOG1610|consen  106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVALPALGPYCVSKFAV  185 (322)
T ss_pred             cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccCcccccchhhHHHH
Confidence            4689999999532           335678999999998777753   22346999999977677777889999999999


Q ss_pred             HHHHHh
Q 029008          187 LSPLLA  192 (200)
Q Consensus       187 E~~~~~  192 (200)
                      |.+...
T Consensus       186 eaf~D~  191 (322)
T KOG1610|consen  186 EAFSDS  191 (322)
T ss_pred             HHHHHH
Confidence            987654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.66  E-value=2.1e-15  Score=121.26  Aligned_cols=99  Identities=29%  Similarity=0.379  Sum_probs=83.2

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh------cC-CCEEEEccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL------DG-VTAVISCVG  130 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~------~~-~d~vi~~ag  130 (200)
                      +|+||||||++|++++++|+++|++|++++|+++...    ..+++.+.+|+.|++++.+++      ++ +|.++|+++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~   76 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAP   76 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence            5899999999999999999999999999999876532    246777889999999999998      57 999999987


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      ....       ......+++++|++.|+++||++||.
T Consensus        77 ~~~~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~  106 (285)
T TIGR03649        77 PIPD-------LAPPMIKFIDFARSKGVRRFVLLSAS  106 (285)
T ss_pred             CCCC-------hhHHHHHHHHHHHHcCCCEEEEeecc
Confidence            5321       12345688999999999999999985

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.66  E-value=4.6e-16  Score=118.06  Aligned_cols=139  Identities=19%  Similarity=0.196  Sum_probs=108.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccC-CCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSW-ANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~-~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|++++||+.|+||+.++++|+++|.++.++..+.+....     ... ...+.|+++|+++..+++++|+       
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg   82 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFG   82 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhC
Confidence            458999999999999999999999999988888766554221     112 3478999999999999998886       


Q ss_pred             CCCEEEEccccCC--CCcccchhhHHHHHH----HHHHHHH-cC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          121 GVTAVISCVGGFG--SNSYMYKINGTANIN----AIRAASE-KG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       121 ~~d~vi~~ag~~~--~~~~~~~~n~~~~~~----~~~~a~~-~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      .+|++||+||...  +|+..+.+|+.|..+    .++++.+ +|  .+-||++||...-.|-+-...|++||+.+-.+-|
T Consensus        83 ~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pVY~AsKaGVvgFTR  162 (261)
T KOG4169|consen   83 TIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVVGFTR  162 (261)
T ss_pred             ceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchhhhhcccceeeeeh
Confidence            4799999999865  578889999777665    4455533 32  3479999996555566667899999999888777


Q ss_pred             h
Q 029008          192 A  192 (200)
Q Consensus       192 ~  192 (200)
                      +
T Consensus       163 S  163 (261)
T KOG4169|consen  163 S  163 (261)
T ss_pred             h
Confidence            6

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.66  E-value=6e-16  Score=121.00  Aligned_cols=129  Identities=26%  Similarity=0.238  Sum_probs=98.2

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-cccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCcc
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSY  137 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~  137 (200)
                      |+|+||||.+|+.+++.|++.+++|+++.|+..... ......+++++.+|+.|++++.++|+++|+||.+.+...    
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~----   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH----   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC----
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch----
Confidence            799999999999999999999999999999874322 122235778999999999999999999999999887643    


Q ss_pred             cchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcC--CcCCcchhhhHHhhHHHHHhh
Q 029008          138 MYKINGTANINAIRAASEKGVKRFVYISAA-DFGVA--NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       138 ~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~--~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                        ........+++++|+++|+++||+.|.. .+...  ..|...+...|..+|+.+++.
T Consensus        77 --~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~  133 (233)
T PF05368_consen   77 --PSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRES  133 (233)
T ss_dssp             --CCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHC
T ss_pred             --hhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhc
Confidence              2334556789999999999999975543 22111  223345667899999999885

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=7.5e-16  Score=115.24  Aligned_cols=138  Identities=17%  Similarity=0.107  Sum_probs=104.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ..+.+||||||+.+||.+++++|.+.|.+|++..|+..+..+.. ....+....+|+.|.++.+++++       ..+++
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            45779999999999999999999999999999999976643322 23467788899999988777664       47999


Q ss_pred             EEccccCCC------------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          126 ISCVGGFGS------------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       126 i~~ag~~~~------------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      |||||....            .+....+|..++..+..+..    ++.-.-||.+||.-.-.|......|+++|+++-.+
T Consensus        83 iNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~~PvYcaTKAaiHsy  162 (245)
T COG3967          83 INNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKAAIHSY  162 (245)
T ss_pred             eecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccccccchhhHHHHHHH
Confidence            999996431            12345789998887776654    44445799999943334555566899999988765


Q ss_pred             HH
Q 029008          190 LL  191 (200)
Q Consensus       190 ~~  191 (200)
                      -.
T Consensus       163 t~  164 (245)
T COG3967         163 TL  164 (245)
T ss_pred             HH
Confidence            43

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=1.4e-15  Score=119.00  Aligned_cols=139  Identities=19%  Similarity=0.230  Sum_probs=112.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc---------cccCCCCeeEEEccCCCHHHHHHHhc--CCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---------RDSWANNVIWHQGNLLSSDSWKEALD--GVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d  123 (200)
                      ++|++||||-||.-|.+|++.|++.||.|+++.|+.....         ......++.++.+|++|...+.++++  ++|
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd   80 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD   80 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence            4689999999999999999999999999999999854311         11223458899999999999999997  579


Q ss_pred             EEEEcccc------CCCCcccchhhHHHHHHHHHHHHHcCC--CEEEEEeccc-cCc----------CCcCCcchhhhHH
Q 029008          124 AVISCVGG------FGSNSYMYKINGTANINAIRAASEKGV--KRFVYISAAD-FGV----------ANYLLQGYYEGKD  184 (200)
Q Consensus       124 ~vi~~ag~------~~~~~~~~~~n~~~~~~~~~~a~~~~~--~~~v~vSS~~-~~~----------~~~~~~~Y~~sK~  184 (200)
                      .|+|.++.      +..+....+++..|+.+++++.+-.+.  -+|...||+. ||.          |-.|.++|+.+|.
T Consensus        81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKl  160 (345)
T COG1089          81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL  160 (345)
T ss_pred             hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCHHHHHHH
Confidence            99999985      346777889999999999999988764  3788888753 553          2357899999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      .+--+..++
T Consensus       161 Ya~W~tvNY  169 (345)
T COG1089         161 YAYWITVNY  169 (345)
T ss_pred             HHHheeeeh
Confidence            887766654

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.65  E-value=1.5e-15  Score=123.18  Aligned_cols=140  Identities=7%  Similarity=-0.061  Sum_probs=98.1

Q ss_pred             CCCCCeEEEEcc--CchhHHHHHHHHHHCCCcEEEeecCCCCc------cc-----c---cC----CCCeeEEEccC--C
Q 029008           53 PPPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSS------LR-----D---SW----ANNVIWHQGNL--L  110 (200)
Q Consensus        53 ~~~~~~ilVtGa--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~------~~-----~---~~----~~~~~~~~~Dl--~  110 (200)
                      ..++|+++||||  +++||.++++.|+++|++|++ .|+.++.      ..     .   ..    .....++.+|+  .
T Consensus         6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   84 (303)
T PLN02730          6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD   84 (303)
T ss_pred             CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence            357899999999  799999999999999999988 5542210      00     0   00    11246788888  3


Q ss_pred             CHH------------------HHHHHhc-------CCCEEEEccccC----C--------CCcccchhhHHHHHHHHHHH
Q 029008          111 SSD------------------SWKEALD-------GVTAVISCVGGF----G--------SNSYMYKINGTANINAIRAA  153 (200)
Q Consensus       111 d~~------------------~~~~~~~-------~~d~vi~~ag~~----~--------~~~~~~~~n~~~~~~~~~~a  153 (200)
                      +++                  +++++++       ++|++|||||..    .        .|+..+++|+.+.+.+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~  164 (303)
T PLN02730         85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF  164 (303)
T ss_pred             ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            333                  5565543       489999999631    1        34567899999999988887


Q ss_pred             HHcC--CCEEEEEeccccCcCCcCC-cchhhhHHhhHHHHHhh
Q 029008          154 SEKG--VKRFVYISAADFGVANYLL-QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       154 ~~~~--~~~~v~vSS~~~~~~~~~~-~~Y~~sK~~~E~~~~~~  193 (200)
                      ...-  -.+||++||.....+.+.. ..|+.+|++++.+.+..
T Consensus       165 ~p~m~~~G~II~isS~a~~~~~p~~~~~Y~asKaAl~~l~~~l  207 (303)
T PLN02730        165 GPIMNPGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVL  207 (303)
T ss_pred             HHHHhcCCEEEEEechhhcCCCCCCchhhHHHHHHHHHHHHHH
Confidence            5431  2689999995322333323 47999999999998864

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.64  E-value=2.3e-15  Score=143.56  Aligned_cols=139  Identities=22%  Similarity=0.331  Sum_probs=107.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC----CcEEEeecCCCCccc---------------ccCCCCeeEEEccCCC----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLR---------------DSWANNVIWHQGNLLS----  111 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~---------------~~~~~~~~~~~~Dl~d----  111 (200)
                      ..++|+|||++||+|.+++++|+++|    ++|+++.|.......               .....+++++.+|+.+    
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            35799999999999999999999987    799999997543110               0112378999999964    


Q ss_pred             --HHHHHHHhcCCCEEEEccccCC---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCc--------------
Q 029008          112 --SDSWKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGV--------------  171 (200)
Q Consensus       112 --~~~~~~~~~~~d~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~--------------  171 (200)
                        .+.+.++..++|+|||||+...   +.......|+.|+.+++++|.+.++++|+|+||. .|+.              
T Consensus      1050 l~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~ 1129 (1389)
T TIGR03443      1050 LSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELVQAG 1129 (1389)
T ss_pred             cCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhhhcc
Confidence              4667778889999999999754   2233446899999999999998888999999993 3431              


Q ss_pred             ----CC---------cCCcchhhhHHhhHHHHHhh
Q 029008          172 ----AN---------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 ----~~---------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                          +.         .+.++|+.||+.+|.++..+
T Consensus      1130 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~ 1164 (1389)
T TIGR03443      1130 GAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREA 1164 (1389)
T ss_pred             CCCCCcccccccccccCCCChHHHHHHHHHHHHHH
Confidence                00         12357999999999999875

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.64  E-value=4.8e-15  Score=120.33  Aligned_cols=142  Identities=18%  Similarity=0.093  Sum_probs=106.5

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc----
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      ....+++++|||++++||.+++++|+.+|.+|+...|+.+...+       ......+.++++|+++.+++.+..+    
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~  110 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK  110 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            33456899999999999999999999999999999999743211       1224578899999999999887654    


Q ss_pred             ---CCCEEEEccccCC--------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcC------C------
Q 029008          121 ---GVTAVISCVGGFG--------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVA------N------  173 (200)
Q Consensus       121 ---~~d~vi~~ag~~~--------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~------~------  173 (200)
                         ..|++|+|||.+.        ..+..+.+|+.|.+.+.+.+    +.....|||++||..++..      +      
T Consensus       111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~~~~~~  190 (314)
T KOG1208|consen  111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAKL  190 (314)
T ss_pred             cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhccchhccC
Confidence               4799999999754        23567899999998776665    4444479999999543110      0      


Q ss_pred             c-CCcchhhhHHhhHHHHHhh
Q 029008          174 Y-LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 ~-~~~~Y~~sK~~~E~~~~~~  193 (200)
                      . ....|+.||.+...+..+.
T Consensus       191 ~~~~~~Y~~SKla~~l~~~eL  211 (314)
T KOG1208|consen  191 YSSDAAYALSKLANVLLANEL  211 (314)
T ss_pred             ccchhHHHHhHHHHHHHHHHH
Confidence            1 1124999999887766653

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.63  E-value=3.6e-15  Score=117.48  Aligned_cols=138  Identities=17%  Similarity=0.128  Sum_probs=104.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc----ccccCC----CCeeEEEccCCC-HHHHHHHhc----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDSWA----NNVIWHQGNLLS-SDSWKEALD----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~~----~~~~~~~~Dl~d-~~~~~~~~~----  120 (200)
                      ..+++++||||+++||.++++.|+++|++|+++.|+.+..    ......    ..+.+..+|+++ .+.++.+++    
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~   82 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE   82 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999988888875531    111112    367788899998 887776654    


Q ss_pred             ---CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcCCcC-CcchhhhHH
Q 029008          121 ---GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVANYL-LQGYYEGKD  184 (200)
Q Consensus       121 ---~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~~~~~~~-~~~Y~~sK~  184 (200)
                         ++|++|||||...           .++..+++|+.+...+.+++.... .++||++||.... ...+ ...|+.||+
T Consensus        83 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~~~~Y~~sK~  161 (251)
T COG1028          83 EFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPGQAAYAASKA  161 (251)
T ss_pred             HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCCcchHHHHHH
Confidence               4899999999642           235678999999988887443221 1189999996544 4445 489999999


Q ss_pred             hhHHHHHh
Q 029008          185 SNLSPLLA  192 (200)
Q Consensus       185 ~~E~~~~~  192 (200)
                      +++.+.+.
T Consensus       162 al~~~~~~  169 (251)
T COG1028         162 ALIGLTKA  169 (251)
T ss_pred             HHHHHHHH
Confidence            99988775

>PLN00015 protochlorophyllide reductase

Probab=99.62  E-value=4e-15  Score=121.11  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             EEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           60 LVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        60 lVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      +||||+++||.+++++|+++| ++|++.+|+.+...+   .  ....++.++.+|++|.++++++++       .+|++|
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI   80 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV   80 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            599999999999999999999 999999987543211   1  112467889999999998887664       479999


Q ss_pred             EccccCC-----------CCcccchhhHHHHHHHHHHHH----HcC--CCEEEEEecc
Q 029008          127 SCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKG--VKRFVYISAA  167 (200)
Q Consensus       127 ~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~--~~~~v~vSS~  167 (200)
                      ||||...           .++..+++|+.+++.+.+.+.    +.+  .++||++||.
T Consensus        81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~  138 (308)
T PLN00015         81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSI  138 (308)
T ss_pred             ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEecc
Confidence            9999632           123568999999988866653    333  4699999995

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.62  E-value=9.1e-15  Score=116.37  Aligned_cols=131  Identities=28%  Similarity=0.308  Sum_probs=106.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~  136 (200)
                      ++|+||||||++|++++++|+++|++|+++.|+.+......  .++++..+|+.+++.+...++++|.++++.+... +.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~~-~~   77 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLLD-GS   77 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEEEeccCCHhHHHHHhccccEEEEEecccc-cc
Confidence            47999999999999999999999999999999987754333  7899999999999999999999999999988655 33


Q ss_pred             c-cchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          137 Y-MYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       137 ~-~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      . ..........+..+.+. .+.++++++|..  +........|..+|...|+.+.+.
T Consensus        78 ~~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~e~~l~~s  132 (275)
T COG0702          78 DAFRAVQVTAVVRAAEAAG-AGVKHGVSLSVL--GADAASPSALARAKAAVEAALRSS  132 (275)
T ss_pred             cchhHHHHHHHHHHHHHhc-CCceEEEEeccC--CCCCCCccHHHHHHHHHHHHHHhc
Confidence            3 44455555555555544 457788888875  444456789999999999999986

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.60  E-value=4.9e-15  Score=115.77  Aligned_cols=138  Identities=17%  Similarity=0.205  Sum_probs=109.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC--CCcEEEeecC-----CCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDR--GLTVASLSRS-----GRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~-----~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~  127 (200)
                      ++++||||.||||++.+..+...  .++.+.++.-     .....+..+..+.+++.+|+.+...+.-++.  .+|.|+|
T Consensus         7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih   86 (331)
T KOG0747|consen    7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH   86 (331)
T ss_pred             ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence            89999999999999999999876  3555555432     1111223345689999999999988888775  5899999


Q ss_pred             ccccCC------CCcccchhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCcC-----------CcCCcchhhhHHhhHH
Q 029008          128 CVGGFG------SNSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGVA-----------NYLLQGYYEGKDSNLS  188 (200)
Q Consensus       128 ~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS-~~~~~~-----------~~~~~~Y~~sK~~~E~  188 (200)
                      .|+...      ++-.....|+.++..++++++.. ++++||++|| .+||..           ..|.++|+++|+++|.
T Consensus        87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKaAaE~  166 (331)
T KOG0747|consen   87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKAAAEM  166 (331)
T ss_pred             hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHHHHHH
Confidence            998533      34456688999999999999888 5889999999 567753           2567899999999999


Q ss_pred             HHHhhc
Q 029008          189 PLLACY  194 (200)
Q Consensus       189 ~~~~~~  194 (200)
                      +++++-
T Consensus       167 ~v~Sy~  172 (331)
T KOG0747|consen  167 LVRSYG  172 (331)
T ss_pred             HHHHHh
Confidence            999973

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.60  E-value=1.6e-14  Score=105.77  Aligned_cols=143  Identities=18%  Similarity=0.215  Sum_probs=117.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+++..+|.||||-.|..+.+++++++-  +|+++.|++...  ......+.....|....+++...+.+.|+.|.|.|.
T Consensus        16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d--~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgT   93 (238)
T KOG4039|consen   16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPD--PATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGT   93 (238)
T ss_pred             hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCC--ccccceeeeEEechHHHHHHHhhhcCCceEEEeecc
Confidence            3578999999999999999999999984  999999985221  122346777778888888888889999999999986


Q ss_pred             CC---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh-ccCcccC
Q 029008          132 FG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC-YSLCCLM  200 (200)
Q Consensus       132 ~~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~-~~~~~~~  200 (200)
                      ..   ..+.+++++....+.++++|++.|+++|+++||.  |......-.|...|..+|.-+.+. |..++||
T Consensus        94 TRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~--GAd~sSrFlY~k~KGEvE~~v~eL~F~~~~i~  164 (238)
T KOG4039|consen   94 TRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSA--GADPSSRFLYMKMKGEVERDVIELDFKHIIIL  164 (238)
T ss_pred             cccccccCceEeechHHHHHHHHHHHhCCCeEEEEEecc--CCCcccceeeeeccchhhhhhhhccccEEEEe
Confidence            54   3577899999999999999999999999999997  566666778999999999987764 6655543

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=3.1e-14  Score=117.89  Aligned_cols=147  Identities=20%  Similarity=0.195  Sum_probs=104.4

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccC----CCCeeEEEccCCCHHHH-HHHhcC----C
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW----ANNVIWHQGNLLSSDSW-KEALDG----V  122 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~Dl~d~~~~-~~~~~~----~  122 (200)
                      ......+|+|+||||.+|+.+++.|+++|+.|.++.|+.+.......    ......+..|...+.++ ..+...    .
T Consensus        75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~  154 (411)
T KOG1203|consen   75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGV  154 (411)
T ss_pred             CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccc
Confidence            33456799999999999999999999999999999999766432211    23444555555443333 333332    3


Q ss_pred             CEEEEccccCCCC---cccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchh------hhHHhhHHHHHhh
Q 029008          123 TAVISCVGGFGSN---SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY------EGKDSNLSPLLAC  193 (200)
Q Consensus       123 d~vi~~ag~~~~~---~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~------~sK~~~E~~~~~~  193 (200)
                      .+++-|+|.....   ...+.+.+.|+.+++++|+.+|++||+++|+......+.+...+.      .+|..+|+++++.
T Consensus       155 ~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~~~~~~~~~~~~~~~k~~~e~~~~~S  234 (411)
T KOG1203|consen  155 VIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQPPNILLLNGLVLKAKLKAEKFLQDS  234 (411)
T ss_pred             eeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccCCCchhhhhhhhhhHHHHhHHHHHHhc
Confidence            5677777654433   355679999999999999999999999999965444444444444      8899999999986


Q ss_pred             -ccCcc
Q 029008          194 -YSLCC  198 (200)
Q Consensus       194 -~~~~~  198 (200)
                       +++++
T Consensus       235 gl~yti  240 (411)
T KOG1203|consen  235 GLPYTI  240 (411)
T ss_pred             CCCcEE
Confidence             44443

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=4.3e-15  Score=108.58  Aligned_cols=139  Identities=16%  Similarity=0.083  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhcC---CCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDG---VTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~---~d~vi~~  128 (200)
                      ..++.|++||+.-+||+.+++.|.+.|.+|+++.|++.....  ...+.-++.+.+|+.+-+.+.+++..   +|.++||
T Consensus         5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLVNN   84 (245)
T KOG1207|consen    5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLVNN   84 (245)
T ss_pred             ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhhcc
Confidence            468899999999999999999999999999999998765322  22234588999999998888887764   6999999


Q ss_pred             cccC----------CCCcccchhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          129 VGGF----------GSNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       129 ag~~----------~~~~~~~~~n~~~~~~~~~~a~----~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||..          ...+..|++|+.+.+++.+...    ..+ .+.||++||...-.+-..++.|+++|++.+.+.+.
T Consensus        85 AgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~nHtvYcatKaALDmlTk~  163 (245)
T KOG1207|consen   85 AGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDNHTVYCATKAALDMLTKC  163 (245)
T ss_pred             chhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCCceEEeecHHHHHHHHHH
Confidence            9952          2457789999999998888743    223 34799999965566777889999999999987664

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.57  E-value=1.9e-14  Score=115.56  Aligned_cols=127  Identities=20%  Similarity=0.163  Sum_probs=86.4

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCC---C
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS---N  135 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~---~  135 (200)
                      |+||||+||||.++++.|+++|++|++++|+........ ...    ..|+.+ +.+...+.++|+|||+||....   +
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~----~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~~~~   74 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK-WEG----YKPWAP-LAESEALEGADAVINLAGEPIADKRW   74 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc-cee----eecccc-cchhhhcCCCCEEEECCCCCcccccC
Confidence            689999999999999999999999999999876532111 111    112222 4455677899999999986321   2


Q ss_pred             -----cccchhhHHHHHHHHHHHHHcCCC--EEEEEecc-ccCcCC----------cCCcchhhhHHhhHHHHH
Q 029008          136 -----SYMYKINGTANINAIRAASEKGVK--RFVYISAA-DFGVAN----------YLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       136 -----~~~~~~n~~~~~~~~~~a~~~~~~--~~v~vSS~-~~~~~~----------~~~~~Y~~sK~~~E~~~~  191 (200)
                           ...+++|+.++.+++++|++++++  .||+.|+. .|+...          .+...|+..+...|..+.
T Consensus        75 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~~~~~~~~~~~~e~~~~  148 (292)
T TIGR01777        75 TEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSPAGDDFLAELCRDWEEAAQ  148 (292)
T ss_pred             CHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCCCCCChHHHHHHHHHHHhh
Confidence                 346788999999999999999874  45555553 455321          112234555656666554

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.56  E-value=3.6e-14  Score=107.75  Aligned_cols=138  Identities=18%  Similarity=0.142  Sum_probs=101.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecC-CCCccc--c---cCCCCeeEEEccCCCHHHHHHHhc--------
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRS-GRSSLR--D---SWANNVIWHQGNLLSSDSWKEALD--------  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~-~~~~~~--~---~~~~~~~~~~~Dl~d~~~~~~~~~--------  120 (200)
                      ++.++||||+.+||..|+++|++. |.++++..++ ++...+  .   ....++++++.|+++.+++..+.+        
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~   82 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGS   82 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhccc
Confidence            356999999999999999999976 6666655554 444221  1   125699999999999888877654        


Q ss_pred             -CCCEEEEccccCCC-----------CcccchhhHHHHHHHHHHH----HHcCCC-----------EEEEEeccc---cC
Q 029008          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVK-----------RFVYISAAD---FG  170 (200)
Q Consensus       121 -~~d~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a----~~~~~~-----------~~v~vSS~~---~~  170 (200)
                       ++|++++|||....           +-..+++|..++..+.|++    ++...+           .||++||..   .+
T Consensus        83 ~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~~  162 (249)
T KOG1611|consen   83 DGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGG  162 (249)
T ss_pred             CCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccCC
Confidence             57999999996431           2457899988888776665    222222           699999843   33


Q ss_pred             cCCcCCcchhhhHHhhHHHHHhh
Q 029008          171 VANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       171 ~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ..+.+...|..||.+.-.+.++.
T Consensus       163 ~~~~~~~AYrmSKaAlN~f~ksl  185 (249)
T KOG1611|consen  163 FRPGGLSAYRMSKAALNMFAKSL  185 (249)
T ss_pred             CCCcchhhhHhhHHHHHHHHHHh
Confidence            34567789999999999988874

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.54  E-value=6.6e-14  Score=113.47  Aligned_cols=140  Identities=8%  Similarity=-0.055  Sum_probs=92.3

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCC---------CCccc--c---cCCC-----CeeEEEccCCCH
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSG---------RSSLR--D---SWAN-----NVIWHQGNLLSS  112 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~--~---~~~~-----~~~~~~~Dl~d~  112 (200)
                      .++|+++|||++  .+||+++++.|+++|++|++.++.+         +....  .   ....     ++..+.+|+.++
T Consensus         6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~   85 (299)
T PRK06300          6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP   85 (299)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence            468999999995  8999999999999999999976531         00000  0   0000     111123343333


Q ss_pred             H------------------HHHHHh-------cCCCEEEEccccCC------------CCcccchhhHHHHHHHHHHHHH
Q 029008          113 D------------------SWKEAL-------DGVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASE  155 (200)
Q Consensus       113 ~------------------~~~~~~-------~~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~  155 (200)
                      +                  ++++++       .++|++|||||...            +|+..+++|+.+.+++.+++..
T Consensus        86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p  165 (299)
T PRK06300         86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP  165 (299)
T ss_pred             EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            2                  244433       35899999997421            2356789999999999888865


Q ss_pred             c--CCCEEEEEeccccCcCCcCCc-chhhhHHhhHHHHHhh
Q 029008          156 K--GVKRFVYISAADFGVANYLLQ-GYYEGKDSNLSPLLAC  193 (200)
Q Consensus       156 ~--~~~~~v~vSS~~~~~~~~~~~-~Y~~sK~~~E~~~~~~  193 (200)
                      .  ..+++|++||.....+.+... .|+.+|++++.+.+..
T Consensus       166 ~m~~~G~ii~iss~~~~~~~p~~~~~Y~asKaAl~~lt~~l  206 (299)
T PRK06300        166 IMNPGGSTISLTYLASMRAVPGYGGGMSSAKAALESDTKVL  206 (299)
T ss_pred             HhhcCCeEEEEeehhhcCcCCCccHHHHHHHHHHHHHHHHH
Confidence            3  124799998843223333333 7999999999988864

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.54  E-value=1.8e-13  Score=100.89  Aligned_cols=126  Identities=25%  Similarity=0.308  Sum_probs=99.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC-CC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG-SN  135 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~-~~  135 (200)
                      |+|.|+||+|.+|++|++++.++||+|++++|++.+...   ...+.+++.|+.|++.+.+.+.+.|+||..-|... +.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~---~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~   77 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA---RQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDN   77 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc---cccceeecccccChhhhHhhhcCCceEEEeccCCCCCh
Confidence            589999999999999999999999999999999877433   25778999999999999999999999999887652 22


Q ss_pred             cccchhhHHHHHHHHHHHHHcCCCEEEEEeccc----------cCcCCcCCcchhhhHHhhHH
Q 029008          136 SYMYKINGTANINAIRAASEKGVKRFVYISAAD----------FGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~----------~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      +..   .......+++..+..++.|++.++.++          .+.|..|...|...+..+|.
T Consensus        78 ~~~---~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae~  137 (211)
T COG2910          78 DEL---HSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAEF  137 (211)
T ss_pred             hHH---HHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHHH
Confidence            221   223345567777888999999999742          23455666778888888883

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.51  E-value=1.2e-13  Score=135.61  Aligned_cols=139  Identities=17%  Similarity=0.121  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCc---------------------------------------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSS---------------------------------------   93 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~---------------------------------------   93 (200)
                      ..+++++||||+++||..++++|+++ |++|++++|+....                                       
T Consensus      1995 ~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~ 2074 (2582)
T TIGR02813      1995 NSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVR 2074 (2582)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccc
Confidence            35789999999999999999999998 69999999982100                                       


Q ss_pred             -----c------c--ccCCCCeeEEEccCCCHHHHHHHhc------CCCEEEEccccCC----------CCcccchhhHH
Q 029008           94 -----L------R--DSWANNVIWHQGNLLSSDSWKEALD------GVTAVISCVGGFG----------SNSYMYKINGT  144 (200)
Q Consensus        94 -----~------~--~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d~vi~~ag~~~----------~~~~~~~~n~~  144 (200)
                           .      .  .....++.++.+|++|.++++++++      ++|+||||||...          .++..+++|+.
T Consensus      2075 ~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813      2075 PVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred             ccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence                 0      0  0112467889999999999887775      4899999999642          34567999999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          145 ANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       145 ~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      |.+++++++.....++||++||...-........|+.+|.+++.+.+.
T Consensus      2155 G~~~Ll~al~~~~~~~IV~~SSvag~~G~~gqs~YaaAkaaL~~la~~ 2202 (2582)
T TIGR02813      2155 GLLSLLAALNAENIKLLALFSSAAGFYGNTGQSDYAMSNDILNKAALQ 2202 (2582)
T ss_pred             HHHHHHHHHHHhCCCeEEEEechhhcCCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999877778999999954323345567899999998887764

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.51  E-value=1.2e-13  Score=109.63  Aligned_cols=138  Identities=19%  Similarity=0.109  Sum_probs=104.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------cccCCCCeeEEEccCCCHHH----HHHHhcC--C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDS----WKEALDG--V  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~~Dl~d~~~----~~~~~~~--~  122 (200)
                      .+.=.+|||||.+||++.+++|+++|.+|++++|+.++..      +....-++.++..|+++++.    +.+.+.+  +
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V  127 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV  127 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence            3467899999999999999999999999999999977621      22234578899999987654    4444554  5


Q ss_pred             CEEEEccccCCC-C-----------cccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          123 TAVISCVGGFGS-N-----------SYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       123 d~vi~~ag~~~~-~-----------~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      .++|||+|...+ +           ...+.+|+.++..+.+..    .+.+.+-||++||...-.+.+..+.|+++|..+
T Consensus       128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~s~ysasK~~v  207 (312)
T KOG1014|consen  128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKAFV  207 (312)
T ss_pred             EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhHHHHHHHHHHH
Confidence            699999996541 1           345688888877665554    444556899999976667778889999999988


Q ss_pred             HHHHHh
Q 029008          187 LSPLLA  192 (200)
Q Consensus       187 E~~~~~  192 (200)
                      +.+-+.
T Consensus       208 ~~~S~~  213 (312)
T KOG1014|consen  208 DFFSRC  213 (312)
T ss_pred             HHHHHH
Confidence            876654

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.50  E-value=2.2e-13  Score=102.78  Aligned_cols=135  Identities=19%  Similarity=0.183  Sum_probs=97.2

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCC-C-ccc------ccCCCCeeEEEccCCCHHHHHHHhcC-------
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR-S-SLR------DSWANNVIWHQGNLLSSDSWKEALDG-------  121 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~-~-~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~~-------  121 (200)
                      +++|||+.|+||..+++.|+++|. +|+++.|+.. . ...      .....++.++.+|++|+++++++++.       
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~   81 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP   81 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence            689999999999999999999986 8888898832 2 111      11245789999999999999998863       


Q ss_pred             CCEEEEccccCCC----------CcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       122 ~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ++.|||++|...+          ....+..-+.+..++.++......+.||+.||...-........|.......+.+.+
T Consensus        82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~gq~~YaaAN~~lda~a~  161 (181)
T PF08659_consen   82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPGQSAYAAANAFLDALAR  161 (181)
T ss_dssp             EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TTBHHHHHHHHHHHHHHH
T ss_pred             cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcchHhHHHHHHHHHHHHH
Confidence            5899999996432          123456668899999999888888999999995422334456889999999998877


Q ss_pred             h
Q 029008          192 A  192 (200)
Q Consensus       192 ~  192 (200)
                      .
T Consensus       162 ~  162 (181)
T PF08659_consen  162 Q  162 (181)
T ss_dssp             H
T ss_pred             H
Confidence            5

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.49  E-value=1.9e-13  Score=108.50  Aligned_cols=136  Identities=19%  Similarity=0.269  Sum_probs=105.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-------CCCCeeEEEccCCCHHHHHHHhcC-------C
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-------WANNVIWHQGNLLSSDSWKEALDG-------V  122 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~-------~  122 (200)
                      .+|+|||++.++|..++.++..+|++|+++.|+.++..+..       ....+.+..+|+.|.+++..++++       +
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            69999999999999999999999999999999876522211       112367899999999998888764       6


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |.+|+|||..-          ..+..+++|+.|+++++.++...    . .++|+++||...-.+-...+.|..+|++..
T Consensus       114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~GysaYs~sK~alr  193 (331)
T KOG1210|consen  114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALR  193 (331)
T ss_pred             ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccccccccHHHHHH
Confidence            99999999531          12457899999999998887433    1 348999999543344456688999999888


Q ss_pred             HHHHh
Q 029008          188 SPLLA  192 (200)
Q Consensus       188 ~~~~~  192 (200)
                      .+...
T Consensus       194 gLa~~  198 (331)
T KOG1210|consen  194 GLAEA  198 (331)
T ss_pred             HHHHH
Confidence            77654

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=99.47  E-value=1.3e-13  Score=104.92  Aligned_cols=143  Identities=44%  Similarity=0.666  Sum_probs=128.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~  136 (200)
                      ...++.|+.|+.|.++++...+.|+.|..+.|+..+..+..+...+.++++|.....-+...+.++..++-++|.+....
T Consensus        53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggfgn~~  132 (283)
T KOG4288|consen   53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGFGNII  132 (283)
T ss_pred             HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCccchH
Confidence            36789999999999999999999999999999988777778888999999999877767788889999999999988888


Q ss_pred             ccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhhccCccc
Q 029008          137 YMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLACYSLCCL  199 (200)
Q Consensus       137 ~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~  199 (200)
                      .+.++|-+...+.++++.++|+++|+|||...+|.++....+|..+|.++|..+.+.|++-++
T Consensus       133 ~m~~ing~ani~a~kaa~~~gv~~fvyISa~d~~~~~~i~rGY~~gKR~AE~Ell~~~~~rgi  195 (283)
T KOG4288|consen  133 LMDRINGTANINAVKAAAKAGVPRFVYISAHDFGLPPLIPRGYIEGKREAEAELLKKFRFRGI  195 (283)
T ss_pred             HHHHhccHhhHHHHHHHHHcCCceEEEEEhhhcCCCCccchhhhccchHHHHHHHHhcCCCce
Confidence            889999999999999999999999999999989888888889999999999988887665443

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.46  E-value=1e-13  Score=108.86  Aligned_cols=131  Identities=15%  Similarity=0.056  Sum_probs=99.4

Q ss_pred             ccC--chhHHHHHHHHHHCCCcEEEeecCCCCc---cc-ccCCCCeeEEEccCCCHHHHHHHh--------cCCCEEEEc
Q 029008           63 GGN--GFVGSHICREALDRGLTVASLSRSGRSS---LR-DSWANNVIWHQGNLLSSDSWKEAL--------DGVTAVISC  128 (200)
Q Consensus        63 Ga~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~-~~~~~~~~~~~~Dl~d~~~~~~~~--------~~~d~vi~~  128 (200)
                      |++  ++||.+++++|+++|++|++++|+.++.   .+ .....+..++.+|++|++++++++        .++|++|||
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~   80 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN   80 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence            666  9999999999999999999999987652   11 111123447999999999888774        358999999


Q ss_pred             cccCCC--------------CcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          129 VGGFGS--------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       129 ag~~~~--------------~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      +|....              +...+++|+.+.+.+++++.+.  .-+++|++||.....+.+....|+.+|++++.+++.
T Consensus        81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~~~~y~~sKaal~~l~r~  160 (241)
T PF13561_consen   81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPGYSAYSASKAALEGLTRS  160 (241)
T ss_dssp             EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCccchhhHHHHHHHHHHHHH
Confidence            985432              2345788999999888887443  125899999865455556667999999999999986


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       161 l  161 (241)
T PF13561_consen  161 L  161 (241)
T ss_dssp             H
T ss_pred             H
Confidence            4

...

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.46  E-value=3e-13  Score=106.32  Aligned_cols=115  Identities=15%  Similarity=0.047  Sum_probs=90.7

Q ss_pred             HHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc----CCCEEEEccccC--CCCcccchhhHHH
Q 029008           72 ICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISCVGGF--GSNSYMYKINGTA  145 (200)
Q Consensus        72 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~vi~~ag~~--~~~~~~~~~n~~~  145 (200)
                      ++++|+++|++|++++|+.+..      ...+++++|++|.++++++++    ++|+||||||..  ..++..+++|+.+
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~~~~~~~~~~vN~~~   74 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGM------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPGTAPVELVARVNFLG   74 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchh------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCCCCCHHHhhhhchHH
Confidence            4788999999999999986542      124678999999999998876    589999999964  3567789999999


Q ss_pred             HHHHHHHHHHc--CCCEEEEEecc-ccC--------------------------cCCcCCcchhhhHHhhHHHHHh
Q 029008          146 NINAIRAASEK--GVKRFVYISAA-DFG--------------------------VANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       146 ~~~~~~~a~~~--~~~~~v~vSS~-~~~--------------------------~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      +..+++++.+.  ..++||++||. .++                          .+.+....|+.+|++.+.+.+.
T Consensus        75 ~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~  150 (241)
T PRK12428         75 LRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALILWTMR  150 (241)
T ss_pred             HHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHHHHHH
Confidence            99999998654  23699999994 343                          1334557899999999988764

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.37  E-value=9.7e-12  Score=104.73  Aligned_cols=141  Identities=18%  Similarity=0.191  Sum_probs=107.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC---CcEEEeecCCCCccc-----------------cc---CCCCeeEEEccCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLR-----------------DS---WANNVIWHQGNLL  110 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~-----------------~~---~~~~~~~~~~Dl~  110 (200)
                      ..+|+|+|||||||+|+-+++.|+..-   -+++++.|.+.....                 +.   ...++..+.||+.
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            368999999999999999999999874   267888887644211                 00   1257888999997


Q ss_pred             CH------HHHHHHhcCCCEEEEccccCCCC---cccchhhHHHHHHHHHHHHHc-CCCEEEEEeccc------------
Q 029008          111 SS------DSWKEALDGVTAVISCVGGFGSN---SYMYKINGTANINAIRAASEK-GVKRFVYISAAD------------  168 (200)
Q Consensus       111 d~------~~~~~~~~~~d~vi~~ag~~~~~---~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~~------------  168 (200)
                      ++      .+++.+.+++|+|||+|+.....   +....+|..|+.++++.|++. ..+.++++|++.            
T Consensus        90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~~  169 (467)
T KOG1221|consen   90 EPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEKP  169 (467)
T ss_pred             CcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccccccccc
Confidence            64      55666778999999999976533   456789999999999999887 467899999962            


Q ss_pred             cCcC----------------------------CcCCcchhhhHHhhHHHHHhhc
Q 029008          169 FGVA----------------------------NYLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       169 ~~~~----------------------------~~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                      |..+                            ...++.|.-+|+.+|+++.+..
T Consensus       170 y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~  223 (467)
T KOG1221|consen  170 YPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA  223 (467)
T ss_pred             cCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc
Confidence            1111                            0235789999999999999863

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.28  E-value=2.4e-12  Score=94.26  Aligned_cols=134  Identities=16%  Similarity=0.193  Sum_probs=99.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .++...+|||+.+++|++.++.|.++|..|.+++-..++-.+  .....++.|..+|++.+++++.++.       +.|+
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            355688999999999999999999999999999876554222  2335689999999999999988775       4799


Q ss_pred             EEEccccCC----------------CCcccchhhHHHHHHHHHHHHH--------cCCC--EEEEEeccccCcCCcCCcc
Q 029008          125 VISCVGGFG----------------SNSYMYKINGTANINAIRAASE--------KGVK--RFVYISAADFGVANYLLQG  178 (200)
Q Consensus       125 vi~~ag~~~----------------~~~~~~~~n~~~~~~~~~~a~~--------~~~~--~~v~vSS~~~~~~~~~~~~  178 (200)
                      .+||||...                +....+++|+.|++|+++....        ++..  -+|+..|...-...-....
T Consensus        87 ~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~gqaa  166 (260)
T KOG1199|consen   87 LVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTGQAA  166 (260)
T ss_pred             eeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCccchhh
Confidence            999999521                2345679999999999877531        1122  4666666432223345678


Q ss_pred             hhhhHHhhH
Q 029008          179 YYEGKDSNL  187 (200)
Q Consensus       179 Y~~sK~~~E  187 (200)
                      |.+||.++-
T Consensus       167 ysaskgaiv  175 (260)
T KOG1199|consen  167 YSASKGAIV  175 (260)
T ss_pred             hhcccCceE
Confidence            999998654

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.26  E-value=1.9e-11  Score=95.77  Aligned_cols=106  Identities=21%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-CCCEEEEccccC--CC-
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-GVTAVISCVGGF--GS-  134 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~~ag~~--~~-  134 (200)
                      |+||||||+||++|+..|.+.||+|++++|++....... ...+.       ..+.+.+..+ ++|+|||.||..  +. 
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~-~~~v~-------~~~~~~~~~~~~~DavINLAG~~I~~rr   72 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL-HPNVT-------LWEGLADALTLGIDAVINLAGEPIAERR   72 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc-Ccccc-------ccchhhhcccCCCCEEEECCCCcccccc
Confidence            689999999999999999999999999999987643221 11222       2233445555 799999999952  22 


Q ss_pred             C-----cccchhhHHHHHHHHHHHHHc--CCCEEEEEecc-ccCcC
Q 029008          135 N-----SYMYKINGTANINAIRAASEK--GVKRFVYISAA-DFGVA  172 (200)
Q Consensus       135 ~-----~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~-~~~~~  172 (200)
                      |     +...+-.+..|..+.++..+.  +++.+|.-|.. .||..
T Consensus        73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~  118 (297)
T COG1090          73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHS  118 (297)
T ss_pred             CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCC
Confidence            3     234455577888888887644  45566665553 35543

>PRK06720 hypothetical protein; Provisional

Probab=99.24  E-value=1.6e-10  Score=86.16  Aligned_cols=79  Identities=11%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc---cc--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---RD--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++++++||||+++||.++++.|++.|++|++++|+.+...   +.  .....+.++.+|++|.++++++++       +
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999999999998754311   11  113456788999999988887553       5


Q ss_pred             CCEEEEccccC
Q 029008          122 VTAVISCVGGF  132 (200)
Q Consensus       122 ~d~vi~~ag~~  132 (200)
                      +|++|||||..
T Consensus        94 iDilVnnAG~~  104 (169)
T PRK06720         94 IDMLFQNAGLY  104 (169)
T ss_pred             CCEEEECCCcC
Confidence            89999999953

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=9.6e-11  Score=90.47  Aligned_cols=133  Identities=19%  Similarity=0.238  Sum_probs=103.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc----cc-------ccCCCCeeEEEccCCCHHHHHHHhcC--
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LR-------DSWANNVIWHQGNLLSSDSWKEALDG--  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~~--  121 (200)
                      ..|..||||-+|.-|++|++.|+..||+|.++.|+.+.-    .+       .........+.+|++|...+.+++..  
T Consensus        27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik  106 (376)
T KOG1372|consen   27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK  106 (376)
T ss_pred             cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence            456899999999999999999999999999999886541    11       11234678899999999999998874  


Q ss_pred             CCEEEEccccC------CCCcccchhhHHHHHHHHHHHHHcCCC---EEEEEecc-ccCcC----------CcCCcchhh
Q 029008          122 VTAVISCVGGF------GSNSYMYKINGTANINAIRAASEKGVK---RFVYISAA-DFGVA----------NYLLQGYYE  181 (200)
Q Consensus       122 ~d~vi~~ag~~------~~~~~~~~~n~~~~~~~~~~a~~~~~~---~~v~vSS~-~~~~~----------~~~~~~Y~~  181 (200)
                      ++-|+|.|+.+      +-++..-++...|++.++++.+.++..   +|.-.|++ -||..          -.|.++|++
T Consensus       107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFyPRSPYa~  186 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFYPRSPYAA  186 (376)
T ss_pred             chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCCCCChhHH
Confidence            68999998854      345667789999999999999887643   77777774 36632          246789999


Q ss_pred             hHHhhH
Q 029008          182 GKDSNL  187 (200)
Q Consensus       182 sK~~~E  187 (200)
                      +|..+-
T Consensus       187 aKmy~~  192 (376)
T KOG1372|consen  187 AKMYGY  192 (376)
T ss_pred             hhhhhe
Confidence            997653

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.17  E-value=1.8e-10  Score=86.44  Aligned_cols=98  Identities=15%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhcC-------CCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDG-------VTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~~-------~d~v  125 (200)
                      |+++||||+|++|. +++.|.++|++|++++|+++....    .....++.++.+|+.|++++.+++++       +|++
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l   79 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA   79 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence            47999999977665 999999999999999987544211    11134688899999999999887763       5666


Q ss_pred             EEccccCCCCcccchhhHHHHHHHHHHHHHcCCC----EEEEEecc
Q 029008          126 ISCVGGFGSNSYMYKINGTANINAIRAASEKGVK----RFVYISAA  167 (200)
Q Consensus       126 i~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~----~~v~vSS~  167 (200)
                      |+.            +++.++.++..+|++.|++    +|+++=.+
T Consensus        80 v~~------------vh~~~~~~~~~~~~~~gv~~~~~~~~h~~gs  113 (177)
T PRK08309         80 VAW------------IHSSAKDALSVVCRELDGSSETYRLFHVLGS  113 (177)
T ss_pred             EEe------------ccccchhhHHHHHHHHccCCCCceEEEEeCC
Confidence            654            3445677899999999998    88888653

>PTZ00325 malate dehydrogenase; Provisional

Probab=99.12  E-value=9.1e-10  Score=89.88  Aligned_cols=115  Identities=17%  Similarity=0.194  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCc-ccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSS-LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+|++|.|+|++|.+|..++..|..++  +++.++++..... ..........+...+.+|+.++.+.++++|+||+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            3578899999999999999999998665  5899999832211 001111111233446667666678899999999999


Q ss_pred             ccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          130 GGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       130 g~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      |....    +...+..|+..+.++++++++++++++|+++|.
T Consensus        85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SN  126 (321)
T PTZ00325         85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSN  126 (321)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            97443    356788999999999999999999999999984

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.12  E-value=1.4e-10  Score=88.51  Aligned_cols=135  Identities=11%  Similarity=0.058  Sum_probs=94.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeE--------EEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIW--------HQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--------~~~Dl~d~~~~~~~~~-----  120 (200)
                      .+++.++|||++.+||..++..+.+++.+.....+......    ..+..+        ..+|+++...+.++++     
T Consensus         4 ~~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~----~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k   79 (253)
T KOG1204|consen    4 NMRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE----LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKK   79 (253)
T ss_pred             ccceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc----ccceEEEecCCcceechHHHHHHHHHHHHhhhhhc
Confidence            35678999999999999999999999876554443322211    123333        3344444433333332     


Q ss_pred             --CCCEEEEccccCC-------------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchh
Q 029008          121 --GVTAVISCVGGFG-------------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYY  180 (200)
Q Consensus       121 --~~d~vi~~ag~~~-------------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~Y~  180 (200)
                        +.|.||||||...             .|...|++|++....+.+.+.+.    . .+-+|++||...-.|-..+..|+
T Consensus        80 ~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~wa~yc  159 (253)
T KOG1204|consen   80 GGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYC  159 (253)
T ss_pred             CCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccccHHHHhh
Confidence              3699999999532             45778999999998777766432    1 35799999965566777788999


Q ss_pred             hhHHhhHHHHHh
Q 029008          181 EGKDSNLSPLLA  192 (200)
Q Consensus       181 ~sK~~~E~~~~~  192 (200)
                      .+|++.+.+.+.
T Consensus       160 ~~KaAr~m~f~~  171 (253)
T KOG1204|consen  160 SSKAARNMYFMV  171 (253)
T ss_pred             hhHHHHHHHHHH
Confidence            999999998875

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.10  E-value=7.8e-10  Score=85.73  Aligned_cols=137  Identities=15%  Similarity=0.073  Sum_probs=97.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCc-----EEEeecCCCCccc------ccC---CCCeeEEEccCCCHHHHHHHhc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLT-----VASLSRSGRSSLR------DSW---ANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~-----V~~~~r~~~~~~~------~~~---~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      +.|.++|||+++++|.+|+.+|++...+     +.+..|+-++..+      ...   ..+++++..|+++..++..+.+
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            4578999999999999999999988643     4555676554221      111   2368899999999877766543


Q ss_pred             -------CCCEEEEccccCCCC-------------------------------------cccchhhHHHHHHHHHHHHHc
Q 029008          121 -------GVTAVISCVGGFGSN-------------------------------------SYMYKINGTANINAIRAASEK  156 (200)
Q Consensus       121 -------~~d~vi~~ag~~~~~-------------------------------------~~~~~~n~~~~~~~~~~a~~~  156 (200)
                             ..|.|+.|||.+..+                                     ...|+.||.|.+-++......
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence                   579999999954211                                     235799999999888776543


Q ss_pred             ----CCCEEEEEeccccCcCC---------cCCcchhhhHHhhHHHHH
Q 029008          157 ----GVKRFVYISAADFGVAN---------YLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       157 ----~~~~~v~vSS~~~~~~~---------~~~~~Y~~sK~~~E~~~~  191 (200)
                          ...++|++||.......         ....+|..||...+-+-.
T Consensus       162 l~~~~~~~lvwtSS~~a~kk~lsleD~q~~kg~~pY~sSKrl~DlLh~  209 (341)
T KOG1478|consen  162 LCHSDNPQLVWTSSRMARKKNLSLEDFQHSKGKEPYSSSKRLTDLLHV  209 (341)
T ss_pred             hhcCCCCeEEEEeecccccccCCHHHHhhhcCCCCcchhHHHHHHHHH
Confidence                22389999995433222         335689999998876433

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=5.8e-10  Score=85.11  Aligned_cols=123  Identities=27%  Similarity=0.262  Sum_probs=91.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~  131 (200)
                      +++|+|||++|.+|++|.+.+.++|.  +-.++.-+               -.+|+++.++.+++|+  +...|||.|+.
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s---------------kd~DLt~~a~t~~lF~~ekPthVIhlAAm   65 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS---------------KDADLTNLADTRALFESEKPTHVIHLAAM   65 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc---------------ccccccchHHHHHHHhccCCceeeehHhh
Confidence            47999999999999999999999875  22222211               1259999999999997  47899999874


Q ss_pred             CC-------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccC---------------cCCcCCcchhhhHHhhHH
Q 029008          132 FG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFG---------------VANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       132 ~~-------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~---------------~~~~~~~~Y~~sK~~~E~  188 (200)
                      ..       .+..+++.|+.-.-|++..|-++|++++++.-| ..|.               .+.+...+|.-+|..+.-
T Consensus        66 VGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv  145 (315)
T KOG1431|consen   66 VGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDV  145 (315)
T ss_pred             hcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHH
Confidence            32       345678999999999999999999998887766 4332               223344578888976665


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      .-+.+
T Consensus       146 ~n~aY  150 (315)
T KOG1431|consen  146 QNQAY  150 (315)
T ss_pred             HHHHH
Confidence            44554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=99.03  E-value=1.3e-09  Score=90.52  Aligned_cols=76  Identities=25%  Similarity=0.240  Sum_probs=66.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccc--cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRD--SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      |++|+|.|+ |++|+.++..|+++| .+|++.+|+.+.....  ....+++.++.|+.|.+.+.+++++.|+|||++.++
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~   79 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF   79 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch
Confidence            579999999 999999999999999 8999999997653332  223489999999999999999999999999999864

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=98.94  E-value=5.1e-09  Score=80.52  Aligned_cols=133  Identities=13%  Similarity=0.067  Sum_probs=95.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC-CC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh--cCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR-GL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL--DGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vi~~ag  130 (200)
                      ..++|+|||+-|.+|..+++.|..+ |. .|++.+-.+...   .....--++..|+.|...++++.  +++|.+||..+
T Consensus        43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~---~V~~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfSA  119 (366)
T KOG2774|consen   43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPA---NVTDVGPYIYLDILDQKSLEEIVVNKRIDWLVHFSA  119 (366)
T ss_pred             CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCch---hhcccCCchhhhhhccccHHHhhcccccceeeeHHH
Confidence            4569999999999999999999877 65 455444332221   11245567888999999999876  36999999876


Q ss_pred             cCC-----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC-----------cCCcchhhhHHhhHHHHH
Q 029008          131 GFG-----SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN-----------YLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       131 ~~~-----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~-----------~~~~~Y~~sK~~~E~~~~  191 (200)
                      ..+     .-.-..++|++|.-|+++.|++++. +++.-|+. .+|...           .|.+.||.||..+|.+-+
T Consensus       120 LLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKVHAEL~GE  196 (366)
T KOG2774|consen  120 LLSAVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKVHAELLGE  196 (366)
T ss_pred             HHHHhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCeeeecCceeechhHHHHHHHHH
Confidence            322     2234578999999999999999876 44445553 455321           345789999999986654

>PLN00106 malate dehydrogenase

Probab=98.93  E-value=1.1e-08  Score=83.57  Aligned_cols=111  Identities=20%  Similarity=0.174  Sum_probs=83.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc-cccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      .++|.|+|++|.+|..++..|..++.  ++.+++.+..... .............++.+.+++.+.++++|+||++||..
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~   97 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP   97 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence            46999999999999999999997764  7999988762210 01111111222335445556788999999999999964


Q ss_pred             C----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          133 G----SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       133 ~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .    .+...+..|+....++++.+.+++.+.+|+++|
T Consensus        98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvS  135 (323)
T PLN00106         98 RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIIS  135 (323)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            3    345677899999999999999999999988888

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.92  E-value=1.2e-08  Score=83.72  Aligned_cols=110  Identities=11%  Similarity=0.037  Sum_probs=75.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC-------CcEEEeecCCCCcccccC----CCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG-------LTVASLSRSGRSSLRDSW----ANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      .+|+||||+|++|..++..|+.++       ++|++++++.........    .+-......|+....++.+.++++|+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            479999999999999999999854       589999986532111000    000002223554456777889999999


Q ss_pred             EEccccCCC----CcccchhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 029008          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~-~~-~~v~vSS  166 (200)
                      ||+||....    ....++.|+.-...+.+...++. .+ .+|.+|.
T Consensus        83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            999997542    24577889888888888887774 34 4555554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=98.87  E-value=5.6e-08  Score=80.65  Aligned_cols=78  Identities=14%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             CCCCeEEEEccCchhHHH--HHHHHHHCCCcEEEeecCCCCcc--------------c---ccCCCCeeEEEccCCCHHH
Q 029008           54 PPSEKLLVLGGNGFVGSH--ICREALDRGLTVASLSRSGRSSL--------------R---DSWANNVIWHQGNLLSSDS  114 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~--l~~~L~~~g~~V~~~~r~~~~~~--------------~---~~~~~~~~~~~~Dl~d~~~  114 (200)
                      ..+|++||||+++++|.+  +++.| ..|++|+++++..+...              .   ......+..+.+|+++++.
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            457899999999999999  89999 99999988885431100              0   1112346788999999988


Q ss_pred             HHHHhc-------CCCEEEEccccC
Q 029008          115 WKEALD-------GVTAVISCVGGF  132 (200)
Q Consensus       115 ~~~~~~-------~~d~vi~~ag~~  132 (200)
                      ++++++       ++|++|||+|..
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence            887765       589999999854

>PRK09620 hypothetical protein; Provisional

Probab=98.82  E-value=2e-08  Score=78.32  Aligned_cols=78  Identities=24%  Similarity=0.279  Sum_probs=54.8

Q ss_pred             CCCeEEEEccC----------------chhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHH
Q 029008           55 PSEKLLVLGGN----------------GFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        55 ~~~~ilVtGa~----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~  117 (200)
                      .+++|+||+|.                |++|.+|+++|+++|++|+++++........ .....+..+..|....+.+.+
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~   81 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMKS   81 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHHH
Confidence            46889999876                9999999999999999999988643221111 001233445553333466777


Q ss_pred             Hhc--CCCEEEEccccC
Q 029008          118 ALD--GVTAVISCVGGF  132 (200)
Q Consensus       118 ~~~--~~d~vi~~ag~~  132 (200)
                      ++.  ++|+|||+|+..
T Consensus        82 ~~~~~~~D~VIH~AAvs   98 (229)
T PRK09620         82 IITHEKVDAVIMAAAGS   98 (229)
T ss_pred             HhcccCCCEEEECcccc
Confidence            784  689999999964

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.80  E-value=2.1e-08  Score=84.23  Aligned_cols=73  Identities=36%  Similarity=0.470  Sum_probs=58.4

Q ss_pred             EEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccccc---CCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           59 LLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDS---WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      |+|.|+ |++|+.+++.|++++.  +|++.+|+.++.....   ...++.++++|+.|.+++.++++++|+||||+|++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            789999 9999999999999974  8999999976632211   45689999999999999999999999999999975

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.74  E-value=5.5e-08  Score=76.00  Aligned_cols=74  Identities=11%  Similarity=0.037  Sum_probs=52.4

Q ss_pred             eEEEE-ccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCC--HHHHHHHhcCCCEEEEccccCC
Q 029008           58 KLLVL-GGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        58 ~ilVt-Ga~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      .-.|| .++|++|.+|+++|+++|++|+++.|......  ....++.++.++..+  .+.+.+.+.++|+||||||..+
T Consensus        17 VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~--~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd   93 (229)
T PRK06732         17 VRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKP--EPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD   93 (229)
T ss_pred             ceeecCccchHHHHHHHHHHHhCCCEEEEEECcccccC--CCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence            33566 47799999999999999999999987643211  112466776654322  2455566778999999999754

>PRK05086 malate dehydrogenase; Provisional

Probab=98.71  E-value=2.3e-07  Score=75.73  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=76.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHH-C--CCcEEEeecCCCCccc--ccCC-CCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALD-R--GLTVASLSRSGRSSLR--DSWA-NNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~-~--g~~V~~~~r~~~~~~~--~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      |+|+|+||+|.+|.+++..|.. .  ++++.++++++.....  .... .....+.+  .+.+++.+.++++|+||.++|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~--~~~~d~~~~l~~~DiVIitaG   78 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG--FSGEDPTPALEGADVVLISAG   78 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE--eCCCCHHHHcCCCCEEEEcCC
Confidence            5899999999999999998855 2  4578888876432111  0111 11122222  223455677789999999999


Q ss_pred             cCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          131 GFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       131 ~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ....+    ...+..|......+++++.+.+.+++|.+.|
T Consensus        79 ~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs  118 (312)
T PRK05086         79 VARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT  118 (312)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            75433    4567889999999999999999999888887

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=98.65  E-value=6.3e-07  Score=68.80  Aligned_cols=138  Identities=9%  Similarity=0.017  Sum_probs=90.6

Q ss_pred             CCCCeEEEEcc--CchhHHHHHHHHHHCCCcEEEeecCCCCcc--ccc--CCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSSL--RDS--WANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~--~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++|+|-  ...|+..|++.|.++|+++......+.-..  ++.  ......+++||+++.++++++|+       
T Consensus         4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g   83 (259)
T COG0623           4 LEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWG   83 (259)
T ss_pred             cCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhC
Confidence            47899999994  378999999999999999988876652111  111  11235679999999999998886       


Q ss_pred             CCCEEEEccccCCCC---cc-----------cchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFGSN---SY-----------MYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~~~---~~-----------~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      .+|.+||+.|.....   ..           .+++-......++++++..  ....+|-++=...-..-+..+..+..|+
T Consensus        84 ~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvMGvAKA  163 (259)
T COG0623          84 KLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVMGVAKA  163 (259)
T ss_pred             cccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchhHHHHH
Confidence            479999999864311   11           1233333334455555443  2335665553211223355568899999


Q ss_pred             hhHHHHH
Q 029008          185 SNLSPLL  191 (200)
Q Consensus       185 ~~E~~~~  191 (200)
                      +.|.-+|
T Consensus       164 aLEasvR  170 (259)
T COG0623         164 ALEASVR  170 (259)
T ss_pred             HHHHHHH
Confidence            9998766

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.56  E-value=3.3e-07  Score=77.11  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcc----------------CchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHH
Q 029008           54 PPSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        54 ~~~~~ilVtGa----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~  117 (200)
                      ..+++++||||                +|.+|.+++++|..+|++|++++++....    .+.+  +...|+++.+++.+
T Consensus       186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~----~~~~--~~~~dv~~~~~~~~  259 (399)
T PRK05579        186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP----TPAG--VKRIDVESAQEMLD  259 (399)
T ss_pred             cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc----CCCC--cEEEccCCHHHHHH
Confidence            57899999999                88899999999999999999998865321    1122  34569999877776


Q ss_pred             Hh----cCCCEEEEccccC
Q 029008          118 AL----DGVTAVISCVGGF  132 (200)
Q Consensus       118 ~~----~~~d~vi~~ag~~  132 (200)
                      .+    ..+|++|||||..
T Consensus       260 ~v~~~~~~~DilI~~Aav~  278 (399)
T PRK05579        260 AVLAALPQADIFIMAAAVA  278 (399)
T ss_pred             HHHHhcCCCCEEEEccccc
Confidence            65    3689999999964

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.55  E-value=1.9e-07  Score=71.09  Aligned_cols=78  Identities=17%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc---c-CCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD---S-WANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+++++|+||+|++|+.+++.|++.|++|+++.|+.++....   . ...+..+..+|+.+.+++.+.++++|+||++.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at  105 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG  105 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence            4568999999999999999999999999999999875432110   0 01234566678889999999999999999976


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      ..
T Consensus       106 ~~  107 (194)
T cd01078         106 AA  107 (194)
T ss_pred             CC
Confidence            53

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=98.52  E-value=1.3e-06  Score=69.20  Aligned_cols=74  Identities=12%  Similarity=0.232  Sum_probs=56.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGF  132 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~  132 (200)
                      |+|+|+||||. |+.+++.|.++|++|++..+......... ..+...+..+..|.+++.+.+.  ++|+||+.+.++
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~-~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPf   76 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP-IHQALTVHTGALDPQELREFLKRHSIDILVDATHPF   76 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc-ccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHH
Confidence            58999999999 99999999999999999999876532211 2223344456678888888886  489999998753

This enzyme was found to be a monomer by gel filtration.

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.52  E-value=2.4e-07  Score=75.22  Aligned_cols=76  Identities=21%  Similarity=0.423  Sum_probs=62.0

Q ss_pred             eEEEEccCchhHHHHHHHHHH----CCCcEEEeecCCCCccc------ccC---CCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           58 KLLVLGGNGFVGSHICREALD----RGLTVASLSRSGRSSLR------DSW---ANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~------~~~---~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      .++|.||+||.|.++++++.+    .|...-+..|++.+..+      ...   .....++.+|..|++++.+..+++.+
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v   86 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV   86 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence            689999999999999999999    67888888998765221      111   12333889999999999999999999


Q ss_pred             EEEccccCC
Q 029008          125 VISCVGGFG  133 (200)
Q Consensus       125 vi~~ag~~~  133 (200)
                      |+||+|+..
T Consensus        87 ivN~vGPyR   95 (423)
T KOG2733|consen   87 IVNCVGPYR   95 (423)
T ss_pred             EEeccccce
Confidence            999999753

>cd00704 MDH Malate dehydrogenase

Probab=98.44  E-value=2.9e-06  Score=69.61  Aligned_cols=101  Identities=13%  Similarity=0.036  Sum_probs=71.0

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCCcccccCCCCeeEEEccCCCH-----------HHHHHHh
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLRDSWANNVIWHQGNLLSS-----------DSWKEAL  119 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~-----------~~~~~~~  119 (200)
                      +|.|+||+|.+|..++..|..+|.       ++++++++...       +..+....|+.|.           ....+.+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~-------~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~   74 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM-------KALEGVVMELQDCAFPLLKGVVITTDPEEAF   74 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc-------CccceeeeehhhhcccccCCcEEecChHHHh
Confidence            789999999999999999998763       48888887521       1112223333333           3456788


Q ss_pred             cCCCEEEEccccCCCC----cccchhhHHHHHHHHHHHHHcC-CCE-EEEEe
Q 029008          120 DGVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEKG-VKR-FVYIS  165 (200)
Q Consensus       120 ~~~d~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~-~~~-~v~vS  165 (200)
                      +++|+||++||....+    ...+..|+.-...+.+...+.+ .+- +|.+|
T Consensus        75 ~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             CCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            8999999999975432    3467788888888888888884 554 44444

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.43  E-value=2.6e-06  Score=69.94  Aligned_cols=102  Identities=12%  Similarity=0.033  Sum_probs=71.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCCcccccCCCCeeEEEccCCCHH-----------HHHHHh
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLRDSWANNVIWHQGNLLSSD-----------SWKEAL  119 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~-----------~~~~~~  119 (200)
                      +|.|+|++|.+|..++..|..+|.       +++++++++....       .+....|+.|..           +..+.+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~-------a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~   73 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKV-------LEGVVMELMDCAFPLLDGVVPTHDPAVAF   73 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccc-------cceeEeehhcccchhcCceeccCChHHHh
Confidence            589999999999999999998653       4888888654321       122233443332           345788


Q ss_pred             cCCCEEEEccccCC----CCcccchhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 029008          120 DGVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (200)
Q Consensus       120 ~~~d~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~-~~-~~v~vSS  166 (200)
                      +++|+||++||...    ++...+..|+.-...+.+...+.+ .+ .+|.+|.
T Consensus        74 ~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        74 TDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             CCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            89999999999743    245567888888888898888874 54 4444443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.39  E-value=3e-06  Score=66.05  Aligned_cols=74  Identities=24%  Similarity=0.354  Sum_probs=62.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccC-CCCeeEEEccCCCHHHHHHH-hcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~  131 (200)
                      |+++|.|+ |-+|..+++.|.++|++|++++++++...+... .....++.+|-+|++.++++ +.++|+++-..|.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            57899997 999999999999999999999998776433222 35789999999999999988 7889999987654

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=98.36  E-value=1e-06  Score=68.81  Aligned_cols=66  Identities=14%  Similarity=0.137  Sum_probs=47.8

Q ss_pred             EEEc-cCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh-------cCCCEEEEcccc
Q 029008           60 LVLG-GNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-------DGVTAVISCVGG  131 (200)
Q Consensus        60 lVtG-a~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~~~d~vi~~ag~  131 (200)
                      .||. ++|++|.+++++|+++|++|+++++.....     ..  ....+|+.+.+++++++       .++|++|||||.
T Consensus        18 ~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l~-----~~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv   90 (227)
T TIGR02114        18 SITNHSTGHLGKIITETFLSAGHEVTLVTTKRALK-----PE--PHPNLSIREIETTKDLLITLKELVQEHDILIHSMAV   90 (227)
T ss_pred             eecCCcccHHHHHHHHHHHHCCCEEEEEcChhhcc-----cc--cCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEe
Confidence            5555 589999999999999999999987632111     00  12346888877776554       358999999996


Q ss_pred             C
Q 029008          132 F  132 (200)
Q Consensus       132 ~  132 (200)
                      .
T Consensus        91 ~   91 (227)
T TIGR02114        91 S   91 (227)
T ss_pred             c
Confidence            4

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.35  E-value=2.8e-06  Score=71.29  Aligned_cols=105  Identities=15%  Similarity=0.167  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcc----------------CchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHH-H
Q 029008           54 PPSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW-K  116 (200)
Q Consensus        54 ~~~~~ilVtGa----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~-~  116 (200)
                      ..+++++||||                +|.+|.+++++|..+|++|+++.+......    +..+  ...|+.+.+++ +
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~----~~~~--~~~~v~~~~~~~~  256 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLT----PPGV--KSIKVSTAEEMLE  256 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCC----CCCc--EEEEeccHHHHHH
Confidence            57899999998                356999999999999999999887654321    1223  45688888777 5


Q ss_pred             HHh----cCCCEEEEccccCCCC------------cccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          117 EAL----DGVTAVISCVGGFGSN------------SYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       117 ~~~----~~~d~vi~~ag~~~~~------------~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                      +++    .++|++|+|||..+..            ...+.+|+..+..+++..++...+ .+.++
T Consensus       257 ~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~~~-~~lvg  320 (390)
T TIGR00521       257 AALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIKKH-QVIVG  320 (390)
T ss_pred             HHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhCCC-cEEEE
Confidence            444    3689999999964310            112345556666666666544322 34444

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.32  E-value=1.7e-06  Score=70.04  Aligned_cols=76  Identities=13%  Similarity=0.133  Sum_probs=58.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCc-EEEeecCCC---Cccc---cc--CCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGR---SSLR---DS--WANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~~r~~~---~~~~---~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ..+++++|+|+ |++|++++..|++.|++ |+++.|+.+   +..+   ..  ....+.+..+|+.+.+++.+.++.+|+
T Consensus       124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            45689999999 89999999999999986 999999852   2111   01  112345667889888888888888999


Q ss_pred             EEEccc
Q 029008          125 VISCVG  130 (200)
Q Consensus       125 vi~~ag  130 (200)
                      ||||..
T Consensus       203 lINaTp  208 (289)
T PRK12548        203 LVNATL  208 (289)
T ss_pred             EEEeCC
Confidence            999864

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.19  E-value=2.7e-06  Score=69.98  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHC-C-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDR-G-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ...+++|+||||+|++|+.++++|+++ | .+++++.|+..+.....  .  ++..+|+   .++.+.+.++|+|||+++
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La--~--el~~~~i---~~l~~~l~~aDiVv~~ts  224 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ--A--ELGGGKI---LSLEEALPEADIVVWVAS  224 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH--H--HhccccH---HhHHHHHccCCEEEECCc
Confidence            356789999999999999999999865 5 58888888754421111  0  1112333   346688889999999998


Q ss_pred             cCC
Q 029008          131 GFG  133 (200)
Q Consensus       131 ~~~  133 (200)
                      ...
T Consensus       225 ~~~  227 (340)
T PRK14982        225 MPK  227 (340)
T ss_pred             CCc
Confidence            643

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.15  E-value=3.2e-05  Score=63.89  Aligned_cols=70  Identities=19%  Similarity=0.284  Sum_probs=47.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCc---EEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLT---VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +++|+|.||+|++|+.+++.|.++||.   +..+.+.......... .+......|+.+.     .++++|+||.++|.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~-~g~~i~v~d~~~~-----~~~~vDvVf~A~g~   73 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF-KGKELKVEDLTTF-----DFSGVDIALFSAGG   73 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee-CCceeEEeeCCHH-----HHcCCCEEEECCCh
Confidence            468999999999999999999998874   4667665433222111 2233444455422     34689999998875

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=4.2e-06  Score=67.58  Aligned_cols=76  Identities=20%  Similarity=0.306  Sum_probs=58.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ...++|-||+||.|..++++|+.+|.+-.+..|+..+...  .....++..+  ++.+++.+++...+.++|+||+|++.
T Consensus         6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~--p~~~p~~~~~~~~~~~VVlncvGPyt   83 (382)
T COG3268           6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVF--PLGVPAALEAMASRTQVVLNCVGPYT   83 (382)
T ss_pred             ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCcccccc--CCCCHHHHHHHHhcceEEEecccccc
Confidence            4578999999999999999999999988888888655221  1112333333  44459999999999999999999864

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=98.09  E-value=1.9e-05  Score=59.60  Aligned_cols=65  Identities=18%  Similarity=0.168  Sum_probs=41.0

Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH----HHhcCCCEEEEccccCC
Q 029008           63 GGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK----EALDGVTAVISCVGGFG  133 (200)
Q Consensus        63 Ga~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~----~~~~~~d~vi~~ag~~~  133 (200)
                      -.+|..|.+|++++..+|++|+++.....-.    .+..+..+..+  ..+++.    +.+...|++|++|++.+
T Consensus        26 ~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~----~p~~~~~i~v~--sa~em~~~~~~~~~~~Di~I~aAAVsD   94 (185)
T PF04127_consen   26 RSSGKMGAALAEEAARRGAEVTLIHGPSSLP----PPPGVKVIRVE--SAEEMLEAVKELLPSADIIIMAAAVSD   94 (185)
T ss_dssp             S--SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-S--SHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred             CCcCHHHHHHHHHHHHCCCEEEEEecCcccc----ccccceEEEec--chhhhhhhhccccCcceeEEEecchhh
Confidence            4679999999999999999999998874221    13577777644  444333    44557899999999754

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.08  E-value=2.1e-05  Score=56.87  Aligned_cols=103  Identities=16%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      ++|.|+|++|.+|.+++..|..++  .++++++++++....         ........+...|       .+.++++|+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-------~~~~~~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-------YEALKDADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-------GGGGTTESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-------ccccccccEE
Confidence            589999999999999999999987  479999988543110         0111223333322       3467789999


Q ss_pred             EEccccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |.++|....    ....++.|..-...+.+...+.+.+-++.+-|
T Consensus        74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred             EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence            999997542    24567888888888888888887654444433

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.08  E-value=2e-05  Score=66.01  Aligned_cols=99  Identities=18%  Similarity=0.267  Sum_probs=63.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHH-HhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE-ALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~~ag~  131 (200)
                      .++++|.|.||||++|+.+++.|.++ +.+|..+.++...... ...........|+.+.+.++. .++++|+||.+.+.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~-i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~  114 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS-FGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH  114 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC-chhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence            46679999999999999999999998 5689888875433111 000111122234433322332 25789999998764


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      .            ....++..+ +.| .++|-.|+.
T Consensus       115 ~------------~s~~i~~~~-~~g-~~VIDlSs~  136 (381)
T PLN02968        115 G------------TTQEIIKAL-PKD-LKIVDLSAD  136 (381)
T ss_pred             H------------HHHHHHHHH-hCC-CEEEEcCch
Confidence            1            334556665 345 478888874

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.01  E-value=3.1e-05  Score=71.95  Aligned_cols=77  Identities=21%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-Cc-------------EEEeecCCCCcccccC-CCCeeEEEccCCCHHHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LT-------------VASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEA  118 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~  118 (200)
                      ..+++|+|.|+ |++|+.+++.|.+.+ ++             |.+.+++.+....... ..+++.+..|+.|.+++.++
T Consensus       567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~  645 (1042)
T PLN02819        567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY  645 (1042)
T ss_pred             ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence            35789999998 999999999998763 33             6767766544221111 13678899999999999999


Q ss_pred             hcCCCEEEEcccc
Q 029008          119 LDGVTAVISCVGG  131 (200)
Q Consensus       119 ~~~~d~vi~~ag~  131 (200)
                      ++++|+||++...
T Consensus       646 v~~~DaVIsalP~  658 (1042)
T PLN02819        646 VSQVDVVISLLPA  658 (1042)
T ss_pred             hcCCCEEEECCCc
Confidence            9999999999874

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.00  E-value=9.8e-05  Score=60.63  Aligned_cols=129  Identities=9%  Similarity=-0.020  Sum_probs=83.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCCcc-c--cc--C------CCCeeEEEccCCCHHHHHH
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSL-R--DS--W------ANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~-~--~~--~------~~~~~~~~~Dl~d~~~~~~  117 (200)
                      .++|.|+|++|.+|..++..|+..|.       ++++++....... .  ..  .      ..++.+.       ....+
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-------~~~~~   74 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-------DDPNV   74 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-------cCcHH
Confidence            46999999999999999999998874       6888888543311 0  00  0      0112221       12246


Q ss_pred             HhcCCCEEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCC-C-EEEEEeccc----c---C-c-CCcCCcchhhh
Q 029008          118 ALDGVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEKGV-K-RFVYISAAD----F---G-V-ANYLLQGYYEG  182 (200)
Q Consensus       118 ~~~~~d~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~-~-~~v~vSS~~----~---~-~-~~~~~~~Y~~s  182 (200)
                      .++++|+||.+||....+    ...+..|+.-...+.+...+.+. + .+|.+|.-.    |   . . .-++...|+.+
T Consensus        75 ~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~t  154 (322)
T cd01338          75 AFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMT  154 (322)
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEeh
Confidence            788999999999974422    45678888888888888888773 5 455555321    0   0 1 12344577777


Q ss_pred             HHhhHHHHH
Q 029008          183 KDSNLSPLL  191 (200)
Q Consensus       183 K~~~E~~~~  191 (200)
                      +...+++..
T Consensus       155 ~LDs~Rl~~  163 (322)
T cd01338         155 RLDHNRAKS  163 (322)
T ss_pred             HHHHHHHHH
Confidence            776666554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.99  E-value=5.9e-05  Score=61.63  Aligned_cols=109  Identities=15%  Similarity=0.121  Sum_probs=69.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCC--CCcccccCC--CC--eeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSG--RSSLRDSWA--NN--VIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~--~~~~~~~~~--~~--~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ++|.|+|++|.+|..++..|+..|.  +|++++++.  +........  ..  ......++.-..+++ .++++|+||.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence            5899999999999999999999987  499999854  221100000  00  000000111111233 48899999999


Q ss_pred             cccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          129 VGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       129 ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      +|....+    ...++.|..-...+++...+.+.+ .+|.+++
T Consensus        80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n  122 (309)
T cd05294          80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN  122 (309)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            9964322    345677888888888887776544 5666665

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.97  E-value=3.9e-05  Score=65.72  Aligned_cols=72  Identities=21%  Similarity=0.211  Sum_probs=54.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc----cccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .+|+++|+|+++ +|..+++.|+++|++|++.+++.....    ......++.++.+|..+     ....++|+||+++|
T Consensus         4 ~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~d~vv~~~g   77 (450)
T PRK14106          4 KGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE-----EFLEGVDLVVVSPG   77 (450)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch-----hHhhcCCEEEECCC
Confidence            468999999855 999999999999999999998753321    11112357788888765     34567999999998


Q ss_pred             cC
Q 029008          131 GF  132 (200)
Q Consensus       131 ~~  132 (200)
                      ..
T Consensus        78 ~~   79 (450)
T PRK14106         78 VP   79 (450)
T ss_pred             CC
Confidence            64

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=97.96  E-value=0.0006  Score=50.07  Aligned_cols=132  Identities=20%  Similarity=0.190  Sum_probs=76.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccC--CC-HHHH----HHHhc--CCCEEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNL--LS-SDSW----KEALD--GVTAVIS  127 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl--~d-~~~~----~~~~~--~~d~vi~  127 (200)
                      .+|+|-|+-|-+|+++++.+.+++|-|.-++-.+.+...     .-.++..|-  ++ ++++    -+.+.  ++|.||.
T Consensus         4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad-----~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~C   78 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQAD-----SSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFC   78 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccccc-----ceEEecCCcchhHHHHHHHHHHHHhhcccccceEEE
Confidence            589999999999999999999999999888776544321     122233332  11 1111    22232  5899999


Q ss_pred             ccccCCC---C--------cccchhhHHHHHHHHHHHHHc-CCCEEEEEecc-ccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          128 CVGGFGS---N--------SYMYKINGTANINAIRAASEK-GVKRFVYISAA-DFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       128 ~ag~~~~---~--------~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~-~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .||.+..   .        +-++.-.+...---...+..+ ..+-++-...+ ..-.+.+..-+|+..|+++.++.++.
T Consensus        79 VAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTPgMIGYGMAKaAVHqLt~SL  157 (236)
T KOG4022|consen   79 VAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTPGMIGYGMAKAAVHQLTSSL  157 (236)
T ss_pred             eeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCCcccchhHHHHHHHHHHHHh
Confidence            9987631   1        111221222111112222221 22334444432 22234567789999999999999863

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.94  E-value=2e-05  Score=67.48  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=59.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      |+|+|+|+ |.+|..+++.|.++|++|++++++++.........++.++.+|.++++.++++ ++++|.+|.+..
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~   74 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD   74 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence            47999998 99999999999999999999998765422211124688999999999999988 888999988754

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.92  E-value=6.7e-05  Score=62.18  Aligned_cols=97  Identities=16%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCccc-ccCCCCeeEE-EccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLR-DSWANNVIWH-QGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~-~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +|++|+|+||+|++|+.+++.|.+. +++++++.++.+.... ......+..+ ..++.+.+..  .++++|+||.|...
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~   78 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH   78 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc
Confidence            4579999999999999999999987 5687776664322111 0000111111 1223333322  45789999998754


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            ....++..+.+.|+ ++|=.|+
T Consensus        79 ~------------~~~~~v~~a~~aG~-~VID~S~  100 (343)
T PRK00436         79 G------------VSMDLAPQLLEAGV-KVIDLSA  100 (343)
T ss_pred             H------------HHHHHHHHHHhCCC-EEEECCc
Confidence            1            12345556656664 7777776

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=97.91  E-value=0.00038  Score=60.76  Aligned_cols=142  Identities=15%  Similarity=0.076  Sum_probs=93.0

Q ss_pred             CCCeEEEEccC-chhHHHHHHHHHHCCCcEEEeecCCCCccc----------ccCCCCeeEEEccCCCHHHHHHHhc---
Q 029008           55 PSEKLLVLGGN-GFVGSHICREALDRGLTVASLSRSGRSSLR----------DSWANNVIWHQGNLLSSDSWKEALD---  120 (200)
Q Consensus        55 ~~~~ilVtGa~-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~~~~Dl~d~~~~~~~~~---  120 (200)
                      ..+.++||||+ |.||..++..|+..|.+|++...+-++...          .......-++.++.....+++.+++   
T Consensus       395 ~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg  474 (866)
T COG4982         395 GDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIG  474 (866)
T ss_pred             ccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhc
Confidence            56789999976 999999999999999999998776544211          1112345677788877777777664   


Q ss_pred             ------------------CCCEEEEccccCC---------CCcccchhhHHHHHHHHHHHHHcC----CC---EEEEEec
Q 029008          121 ------------------GVTAVISCVGGFG---------SNSYMYKINGTANINAIRAASEKG----VK---RFVYISA  166 (200)
Q Consensus       121 ------------------~~d~vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a~~~~----~~---~~v~vSS  166 (200)
                                        ..|.+|-.|++..         ..+..+++-+.....++-..++.+    +.   ++|+-.|
T Consensus       475 ~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgS  554 (866)
T COG4982         475 DEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGS  554 (866)
T ss_pred             cccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCC
Confidence                              1367777766421         112334554555555555555543    22   5777666


Q ss_pred             cccCcCCcCCcchhhhHHhhHHHHHhhccCc
Q 029008          167 ADFGVANYLLQGYYEGKDSNLSPLLACYSLC  197 (200)
Q Consensus       167 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~  197 (200)
                      -.-|.- .....|+.+|.+.|.++..|+.+.
T Consensus       555 PNrG~F-GgDGaYgEsK~aldav~~RW~sEs  584 (866)
T COG4982         555 PNRGMF-GGDGAYGESKLALDAVVNRWHSES  584 (866)
T ss_pred             CCCCcc-CCCcchhhHHHHHHHHHHHhhccc
Confidence            422211 123579999999999999887543

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.89  E-value=0.00012  Score=60.04  Aligned_cols=111  Identities=13%  Similarity=0.035  Sum_probs=70.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCC--ccc-ccCCCCee-EEEccCCCHHHHHHHhcCCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRS--SLR-DSWANNVI-WHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~-~~~~~~~~-~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ..+|.|+|++|.+|..++..|..+|.       ++++++.....  ... ........ ....+..-.....+.++++|+
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv   82 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA   82 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence            35899999999999999999998874       68888886432  110 00000000 000011001123467889999


Q ss_pred             EEEccccCCC----CcccchhhHHHHHHHHHHHHHcCC-CEEEEEec
Q 029008          125 VISCVGGFGS----NSYMYKINGTANINAIRAASEKGV-KRFVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~-~~~v~vSS  166 (200)
                      ||.+||....    ....+..|..-...+.+.+.+.+. +-++.+-|
T Consensus        83 VVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        83 ALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            9999997432    245678888888888988888875 54444444

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.89  E-value=2.5e-05  Score=56.00  Aligned_cols=74  Identities=16%  Similarity=0.160  Sum_probs=53.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCc-EEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ...+++++|.|+ |+.|+.++..|.+.|.+ |+++.|+.++..+   ......+.++..     +++.+.+.++|+||++
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~-----~~~~~~~~~~DivI~a   82 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPL-----EDLEEALQEADIVINA   82 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEG-----GGHCHHHHTESEEEE-
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeH-----HHHHHHHhhCCeEEEe
Confidence            357899999998 99999999999999986 9999998655222   111224555543     3345778899999999


Q ss_pred             cccC
Q 029008          129 VGGF  132 (200)
Q Consensus       129 ag~~  132 (200)
                      .+..
T Consensus        83 T~~~   86 (135)
T PF01488_consen   83 TPSG   86 (135)
T ss_dssp             SSTT
T ss_pred             cCCC
Confidence            7753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.84  E-value=0.00029  Score=57.50  Aligned_cols=101  Identities=15%  Similarity=0.235  Sum_probs=69.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccccc---------CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDS---------WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      ++|.|+|+ |.+|..++..|+..|  ++|.+++++.+......         ......+...   +.    +.+.++|+|
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~---~~----~~l~~aDIV   72 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAG---DY----SDCKDADIV   72 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcC---CH----HHhCCCCEE
Confidence            47999997 999999999999999  58999999766522100         0112222222   22    236799999


Q ss_pred             EEccccCCC----CcccchhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 029008          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (200)
Q Consensus       126 i~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~-~v~vS  165 (200)
                      |+++|....    ....+..|..-...+.+.+++.+.+- ++.+|
T Consensus        73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            999996432    23566778888888888888877554 44444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.82  E-value=0.00019  Score=59.36  Aligned_cols=68  Identities=15%  Similarity=0.303  Sum_probs=45.1

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEE---EeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +|+|.||+|++|..+++.|.+++|.+.   .+.+......... ..+......|+.     ...++++|++|.++|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~~~~~~~~~~-----~~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKGKELEVNEAK-----IESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCCeeEEEEeCC-----hHHhcCCCEEEECCCH
Confidence            589999999999999999999888643   3335433221111 122445555553     1234789999999875

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=97.82  E-value=4.6e-05  Score=70.48  Aligned_cols=145  Identities=18%  Similarity=0.223  Sum_probs=101.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEE-EeecCCCCc-cc----ccC---CCCeeEEEccCCCHHHHHHHhcC----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVA-SLSRSGRSS-LR----DSW---ANNVIWHQGNLLSSDSWKEALDG----  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~-~~~r~~~~~-~~----~~~---~~~~~~~~~Dl~d~~~~~~~~~~----  121 (200)
                      ..|..+|+||-|+.|..+++.|..+|.+-. +.+|+.-+. .+    ..|   .-++.+-..|++..+....+++.    
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence            357899999999999999999999998544 445543221 11    112   22455566777777777777763    


Q ss_pred             --CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 --VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 --~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                        +..|||.|....          +.+..-+.-+.++.++=+..++..  .+-||..||.+.|..+...+.||.+..+.|
T Consensus      1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~GQtNYG~aNS~ME 1926 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAGQTNYGLANSAME 1926 (2376)
T ss_pred             ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCcccccchhhHHHH
Confidence              578888887432          112233445677777666666654  467999999888999999999999999999


Q ss_pred             HHHHhh----ccCccc
Q 029008          188 SPLLAC----YSLCCL  199 (200)
Q Consensus       188 ~~~~~~----~~~~~~  199 (200)
                      +++..-    ||.+.|
T Consensus      1927 RiceqRr~~GfPG~Ai 1942 (2376)
T KOG1202|consen 1927 RICEQRRHEGFPGTAI 1942 (2376)
T ss_pred             HHHHHhhhcCCCccee
Confidence            999863    776554

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.81  E-value=0.00016  Score=59.02  Aligned_cols=106  Identities=19%  Similarity=0.125  Sum_probs=70.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccccc--CC--CCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDS--WA--NNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~--~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ++|.|+|++|.+|..++..|..+|  .++.+++.+ ....+..  ..  ....+...  ...+++.+.++++|+||.+||
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~--~~~~~~y~~~~daDivvitaG   77 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGY--LGPEELKKALKGADVVVIPAG   77 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEe--cCCCchHHhcCCCCEEEEeCC
Confidence            489999999999999999999888  478888876 2111110  01  11122211  012235678899999999999


Q ss_pred             cCCCC----cccchhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 029008          131 GFGSN----SYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (200)
Q Consensus       131 ~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~-~v~vS  165 (200)
                      ....+    ...++.|..-...+++...+.+.+- +|.+|
T Consensus        78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt  117 (310)
T cd01337          78 VPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS  117 (310)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            74322    4467788888888888888887664 44444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.81  E-value=0.0002  Score=59.09  Aligned_cols=93  Identities=17%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcE---EEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTV---ASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V---~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++.+|.|+||||++|..+++.|.++++.+   ..+....... +.....+   ...++.+.+.. + ++++|++|.+.+.
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG-~~l~~~~---~~l~~~~~~~~-~-~~~vD~vFla~p~   76 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAG-HSVPFAG---KNLRVREVDSF-D-FSQVQLAFFAAGA   76 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCC-CeeccCC---cceEEeeCChH-H-hcCCCEEEEcCCH
Confidence            34689999999999999999999877643   3333222111 1011111   12333333322 2 4789999998763


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            ....+++.+.+.|+ ++|=.|+
T Consensus        77 ~------------~s~~~v~~~~~~G~-~VIDlS~   98 (336)
T PRK05671         77 A------------VSRSFAEKARAAGC-SVIDLSG   98 (336)
T ss_pred             H------------HHHHHHHHHHHCCC-eEEECch
Confidence            1            11235666666776 4666665

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.76  E-value=0.00078  Score=55.20  Aligned_cols=103  Identities=14%  Similarity=0.209  Sum_probs=70.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      .+++|.|+|+ |.+|..++..|+.+|.  ++.+++++.+....      ..  ...++.+...      ++ +.++++|+
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~------~~-~~~~~adi   76 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAG------DY-SDCKDADL   76 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeC------CH-HHhCCCCE
Confidence            4569999998 9999999999999986  79999987654211      10  0123333322      13 34789999


Q ss_pred             EEEccccCCC----CcccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          125 VISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       125 vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      ||.++|....    ....+..|..-...+++.+.+.+.+ .++.+|
T Consensus        77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            9999997442    2456677888888888888877655 344444

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.76  E-value=0.00015  Score=60.23  Aligned_cols=95  Identities=16%  Similarity=0.197  Sum_probs=56.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-CCcEEEe-ecCCCC--cccccCCCCeeEE-EccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRS--SLRDSWANNVIWH-QGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~-~r~~~~--~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++|.|+||||++|..+++.|.+. +.++..+ +++...  ...... ..+... ..++.+. +.+++++++|++|.|.+.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~-~~l~~~~~~~~~~~-~~~~~~~~~DvVf~alP~   78 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVH-PHLRGLVDLNLEPI-DEEEIAEDADVVFLALPH   78 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhC-ccccccCCceeecC-CHHHhhcCCCEEEECCCc
Confidence            47999999999999999999977 5677744 443321  111001 111111 1112211 223444689999998764


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            ....++..+.+.| .++|=.|+
T Consensus        79 ~------------~s~~~~~~~~~~G-~~VIDlS~  100 (346)
T TIGR01850        79 G------------VSAELAPELLAAG-VKVIDLSA  100 (346)
T ss_pred             h------------HHHHHHHHHHhCC-CEEEeCCh
Confidence            2            2345566666666 47888887

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK05442 malate dehydrogenase; Provisional

Probab=97.75  E-value=0.00045  Score=56.82  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=69.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCCc-cc--cc--C------CCCeeEEEccCCCHHHHHH
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSS-LR--DS--W------ANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~-~~--~~--~------~~~~~~~~~Dl~d~~~~~~  117 (200)
                      +++|.|+|++|.+|..++..|...|.       ++.+++.++... ..  ..  .      ..++.+.       ....+
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-------~~~y~   76 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-------DDPNV   76 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-------cChHH
Confidence            46999999999999999999988763       688888754321 11  00  0      0112211       12246


Q ss_pred             HhcCCCEEEEccccCC----CCcccchhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 029008          118 ALDGVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (200)
Q Consensus       118 ~~~~~d~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~-~~-~~v~vSS  166 (200)
                      .++++|+||.+||...    +....+..|..-...+.+...++. .+ .+|.+|.
T Consensus        77 ~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  131 (326)
T PRK05442         77 AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN  131 (326)
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            7889999999999643    224567888888888888888854 34 4555553

>PRK04148 hypothetical protein; Provisional

Probab=97.74  E-value=0.00016  Score=51.50  Aligned_cols=96  Identities=11%  Similarity=0.125  Sum_probs=70.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~  134 (200)
                      .+++++++|. | -|..++..|.+.|++|++++.++... +......+.++.+|+.+++  -++-+++|.|+..    .+
T Consensus        16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV-~~a~~~~~~~v~dDlf~p~--~~~y~~a~liysi----rp   86 (134)
T PRK04148         16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAV-EKAKKLGLNAFVDDLFNPN--LEIYKNAKLIYSI----RP   86 (134)
T ss_pred             cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHH-HHHHHhCCeEEECcCCCCC--HHHHhcCCEEEEe----CC
Confidence            3478999997 5 89999999999999999999987642 1122346789999999887  4667789999874    33


Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +.++       ...+++.+++.++.-+|..=|
T Consensus        87 p~el-------~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         87 PRDL-------QPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CHHH-------HHHHHHHHHHcCCCEEEEcCC
Confidence            3333       245688888888875554333

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.72  E-value=0.00025  Score=49.13  Aligned_cols=70  Identities=17%  Similarity=0.299  Sum_probs=53.9

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      |+|.|. |.+|..+++.|.+.+++|++++++++... ......+.++.+|.+|++.++++ +++++.+|-+..
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~-~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVE-ELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHH-HHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHH-HHHhcccccccccchhhhHHhhcCccccCEEEEccC
Confidence            578887 89999999999998779999998865421 11234588999999999999875 567898888654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.70  E-value=0.00032  Score=60.09  Aligned_cols=101  Identities=18%  Similarity=0.283  Sum_probs=70.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHH-HhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKE-ALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~~ag~  131 (200)
                      ..+++++|+|+ |.+|..+++.|.+.|++|++++++++...... ...++.++.+|.++++.+++ .++++|.||-+...
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~  307 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND  307 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence            45789999998 99999999999999999999998865422111 12367889999999998865 45689999875432


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                         .    ..|...    ...+++.+..++|....
T Consensus       308 ---~----~~n~~~----~~~~~~~~~~~ii~~~~  331 (453)
T PRK09496        308 ---D----EANILS----SLLAKRLGAKKVIALVN  331 (453)
T ss_pred             ---c----HHHHHH----HHHHHHhCCCeEEEEEC
Confidence               1    234332    33445556666665544

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.70  E-value=0.00027  Score=57.78  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccccc--CC--CCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDS--WA--NNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +|.|+|++|.+|..++..|+.++.  ++.++++++.. .+..  ..  ....+....  +.+++.+.++++|+||.++|.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-g~a~DL~~~~~~~~i~~~~--~~~~~~~~~~daDivvitaG~   77 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-GVAADLSHIPTAASVKGFS--GEEGLENALKGADVVVIPAGV   77 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-EEEchhhcCCcCceEEEec--CCCchHHHcCCCCEEEEeCCC
Confidence            589999999999999999998875  78888886621 1111  00  111222100  112345788999999999996


Q ss_pred             CCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ...    ....+..|+.-...+.+...+.+.+-+|.+-|
T Consensus        78 ~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs  116 (312)
T TIGR01772        78 PRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT  116 (312)
T ss_pred             CCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence            432    24567788888888888888777664444433

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.69  E-value=0.00048  Score=54.80  Aligned_cols=68  Identities=16%  Similarity=0.213  Sum_probs=45.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC-CCcEEEee-cCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +++|.|+|++|.+|+.+++.+.+. +.++.++. ++.+.... .       -..++...++++++++++|+||.+..+
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~-~-------~~~~i~~~~dl~~ll~~~DvVid~t~p   70 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG-Q-------GALGVAITDDLEAVLADADVLIDFTTP   70 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc-c-------CCCCccccCCHHHhccCCCEEEECCCH
Confidence            368999999999999999998875 57777654 44332211 1       112333345567777789999987643

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.67  E-value=0.00075  Score=47.35  Aligned_cols=89  Identities=17%  Similarity=0.325  Sum_probs=52.5

Q ss_pred             eEEEEccCchhHHHHHHHHHHCC-CcEEEe-ecCCCCc--ccccCC-----CCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           58 KLLVLGGNGFVGSHICREALDRG-LTVASL-SRSGRSS--LRDSWA-----NNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~-~r~~~~~--~~~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ||.|+||||++|+.+++.|.+.- .++..+ .++....  .....+     ....+..   .+.+    .+.++|+||.|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED---ADPE----ELSDVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE---TSGH----HHTTESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee---cchh----HhhcCCEEEec
Confidence            68999999999999999999964 354444 4443121  111111     1222222   2232    34889999999


Q ss_pred             cccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          129 VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       129 ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .+..            ....+.+.+.+.|+ ++|=.|+
T Consensus        74 ~~~~------------~~~~~~~~~~~~g~-~ViD~s~   98 (121)
T PF01118_consen   74 LPHG------------ASKELAPKLLKAGI-KVIDLSG   98 (121)
T ss_dssp             SCHH------------HHHHHHHHHHHTTS-EEEESSS
T ss_pred             Cchh------------HHHHHHHHHhhCCc-EEEeCCH
Confidence            7641            22445666677777 5665555

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.59  E-value=0.00034  Score=52.08  Aligned_cols=57  Identities=26%  Similarity=0.348  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+++|+|+|+++.+|..+++.|.++|.+|+++.|+.                      +++.+.+.++|+||.+.+.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~----------------------~~l~~~l~~aDiVIsat~~   97 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT----------------------KNLKEHTKQADIVIVAVGK   97 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc----------------------hhHHHHHhhCCEEEEcCCC
Confidence            46789999999966689999999999999999888752                      3466788899999998875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.59  E-value=0.0012  Score=54.69  Aligned_cols=69  Identities=20%  Similarity=0.342  Sum_probs=42.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCc---EEEeec--CCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLT---VASLSR--SGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~---V~~~~r--~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ...+|.|.||+|++|..+++.|.+++|.   +..+..  +..+....   .+......++ ++    ..++++|+||.++
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~---~~~~~~v~~~-~~----~~~~~~D~vf~a~   77 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF---EGRDYTVEEL-TE----DSFDGVDIALFSA   77 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee---cCceeEEEeC-CH----HHHcCCCEEEECC
Confidence            3468999999999999999999998873   333332  22221111   1122222233 22    2347899999988


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      +.
T Consensus        78 p~   79 (344)
T PLN02383         78 GG   79 (344)
T ss_pred             Cc
Confidence            64

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.58  E-value=7.2e-05  Score=54.52  Aligned_cols=76  Identities=14%  Similarity=0.064  Sum_probs=50.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+++++|+|+ |.+|..+++.|.+.| ++|.+.+|+.++..+....-....+..+..+.   .++++++|+||++....
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dvvi~~~~~~   92 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDL---EELLAEADLIINTTPVG   92 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecch---hhccccCCEEEeCcCCC
Confidence            35679999998 999999999999996 78999988755422111000111112233333   34478899999998764


Q ss_pred             C
Q 029008          133 G  133 (200)
Q Consensus       133 ~  133 (200)
                      .
T Consensus        93 ~   93 (155)
T cd01065          93 M   93 (155)
T ss_pred             C
Confidence            3

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.55  E-value=0.00013  Score=51.59  Aligned_cols=89  Identities=18%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHH-CCCcEEEee-cCCCCcccccCC--CCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           57 EKLLVLGGNGFVGSHICREALD-RGLTVASLS-RSGRSSLRDSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~-r~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ++|.|.|++|.+|+.+++.+.+ .+.++.+.. |+.+........  .+..  ...+.-.++++++++.+|++|.+..+ 
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~--~~~~~v~~~l~~~~~~~DVvIDfT~p-   77 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG--PLGVPVTDDLEELLEEADVVIDFTNP-   77 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS--T-SSBEBS-HHHHTTH-SEEEEES-H-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC--CcccccchhHHHhcccCCEEEEcCCh-
Confidence            4899999999999999999999 577765554 444221110000  0000  01111125578888889999996422 


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCC
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVK  159 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~  159 (200)
                                 ......++.+.++|+.
T Consensus        78 -----------~~~~~~~~~~~~~g~~   93 (124)
T PF01113_consen   78 -----------DAVYDNLEYALKHGVP   93 (124)
T ss_dssp             -----------HHHHHHHHHHHHHT-E
T ss_pred             -----------HHhHHHHHHHHhCCCC
Confidence                       3445667888888763

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.54  E-value=0.0028  Score=52.15  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      .++|.|+|+ |.+|..++..++..|. +|++++.+++....         ........+...  .|   + +.++++|+|
T Consensus         6 ~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~--~d---~-~~l~~aDiV   78 (321)
T PTZ00082          6 RRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT--NN---Y-EDIAGSDVV   78 (321)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC--CC---H-HHhCCCCEE
Confidence            469999996 9999999999999995 89999987764211         000112233221  12   3 357899999


Q ss_pred             EEccccCCCCc---------ccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          126 ISCVGGFGSNS---------YMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~~---------~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      |.++|....+.         ..+..|+.-...+++.+.+.+.+ .+|++|.
T Consensus        79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN  129 (321)
T PTZ00082         79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN  129 (321)
T ss_pred             EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99998643222         24455666666777777777655 5666664

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.53  E-value=0.0006  Score=55.97  Aligned_cols=105  Identities=12%  Similarity=0.182  Sum_probs=68.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccc-c---C-----CCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRD-S---W-----ANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-~---~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ..++|.|+|| |.+|..++..+...| .++++++.+++..... .   .     .....+.     ...+++ .++++|+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-----~~~d~~-~l~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-----GTNNYE-DIKDSDV   76 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEE-----eCCCHH-HhCCCCE
Confidence            4569999997 999999999999888 6888999876542110 0   0     0011111     112344 6789999


Q ss_pred             EEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCE-EEEEec
Q 029008          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKR-FVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~-~v~vSS  166 (200)
                      ||.++|....+    ...+..|..-...+++.+.+.+.+. +|++|.
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99999864422    3345566666666777777766554 555554

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.52  E-value=0.0012  Score=54.69  Aligned_cols=99  Identities=11%  Similarity=0.196  Sum_probs=66.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc-------------------c-----c---ccC-CCCeeE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS-------------------L-----R---DSW-ANNVIW  104 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~-----~---~~~-~~~~~~  104 (200)
                      ...++|+|+|+ |++|..+++.|...|. ++++++++.-+.                   +     +   ... .-+++.
T Consensus        22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            45679999998 8999999999999997 888888864110                   0     0   001 124566


Q ss_pred             EEccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          105 HQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       105 ~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +..|++ ++.++++++++|+||.+...+           ..-..+-+.|.+.++ .+|+.+.
T Consensus       101 ~~~~~~-~~~~~~~~~~~DlVid~~D~~-----------~~r~~in~~~~~~~i-p~i~~~~  149 (338)
T PRK12475        101 VVTDVT-VEELEELVKEVDLIIDATDNF-----------DTRLLINDLSQKYNI-PWIYGGC  149 (338)
T ss_pred             EeccCC-HHHHHHHhcCCCEEEEcCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            777774 567888899999999985321           112334566777775 4666654

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.52  E-value=0.00085  Score=54.59  Aligned_cols=108  Identities=16%  Similarity=0.112  Sum_probs=70.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcccc-cC-CCCeeEEE--ccCCCHHHHHHHhcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRD-SW-ANNVIWHQ--GNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~-~~~~~~~~--~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ++|.|+|+ |.+|+.++..|..++  .++.+++...+...-. .. .....+..  .++....+ .+.+++.|+|+-+||
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAG   78 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCC
Confidence            58999999 999999999998775  3889999884332110 00 00001110  11111111 456789999999999


Q ss_pred             cCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          131 GFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       131 ~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ....+    ...++.|..-...+.+...+.+.+-++++-|
T Consensus        79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt  118 (313)
T COG0039          79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT  118 (313)
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence            75533    4577888888888888888887765555555

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.47  E-value=0.0017  Score=53.77  Aligned_cols=99  Identities=16%  Similarity=0.236  Sum_probs=67.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc-------------------c-----c---ccCC-CCeeE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS-------------------L-----R---DSWA-NNVIW  104 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~-----~---~~~~-~~~~~  104 (200)
                      ....+|+|+|+ |++|..+++.|...|. ++++++.+.-+.                   +     +   ...+ -+++.
T Consensus        22 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~  100 (339)
T PRK07688         22 LREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA  100 (339)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            45679999998 9999999999999998 889888763110                   0     0   0011 13556


Q ss_pred             EEccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          105 HQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       105 ~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +..+++ ++.+.++++++|+||.+...           ...-..+-++|.+.++ .+|+.+.
T Consensus       101 ~~~~~~-~~~~~~~~~~~DlVid~~Dn-----------~~~r~~ln~~~~~~~i-P~i~~~~  149 (339)
T PRK07688        101 IVQDVT-AEELEELVTGVDLIIDATDN-----------FETRFIVNDAAQKYGI-PWIYGAC  149 (339)
T ss_pred             EeccCC-HHHHHHHHcCCCEEEEcCCC-----------HHHHHHHHHHHHHhCC-CEEEEee
Confidence            666764 55677888999999998432           2223356677777775 4666664

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=97.46  E-value=0.0013  Score=52.27  Aligned_cols=109  Identities=19%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEe---ecCC-CCccccc--CCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASL---SRSG-RSSLRDS--WANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~---~r~~-~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      .+.+|.|.||+|+||+.|...|. ....|.-+   +-.. +.-....  ...+..+.  ..+-++.++.+++++|+||--
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~--g~~g~~~L~~al~~advVvIP  103 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVV--GFTGADGLENALKGADVVVIP  103 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCcee--ccCChhHHHHHhcCCCEEEec
Confidence            45699999999999999977665 44333222   2111 1100000  01111221  233456899999999999999


Q ss_pred             cccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          129 VGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       129 ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      ||....+    ++.|.+|.--...+..++.+...+ .+.+||.
T Consensus       104 AGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN  146 (345)
T KOG1494|consen  104 AGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN  146 (345)
T ss_pred             CCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence            9976533    678999988888888888777654 4555554

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.37  E-value=0.0019  Score=53.75  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=29.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~   90 (200)
                      +++|+|+||+|++|+.+++.|.+... +++.+.++.
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~   38 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE   38 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence            57999999999999999999998765 888774543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.36  E-value=0.00043  Score=61.05  Aligned_cols=72  Identities=19%  Similarity=0.218  Sum_probs=58.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCV  129 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~a  129 (200)
                      ..+++|.|+ |.+|+.+++.|.++|++|++++.++++..+ ....+..++.+|.+|++.++++ ++++|.++-+.
T Consensus       417 ~~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~-~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~  489 (558)
T PRK10669        417 CNHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDE-LRERGIRAVLGNAANEEIMQLAHLDCARWLLLTI  489 (558)
T ss_pred             CCCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHH-HHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence            468999997 999999999999999999999988765322 2235789999999999988864 46789877654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.34  E-value=0.00052  Score=55.49  Aligned_cols=71  Identities=23%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ...+++++|+|. |.+|+.+++.|...|++|++.+|+.++... ....+...+     +.+++.+.+.++|+||++..
T Consensus       148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~-~~~~g~~~~-----~~~~l~~~l~~aDiVint~P  218 (287)
T TIGR02853       148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR-ITEMGLIPF-----PLNKLEEKVAEIDIVINTIP  218 (287)
T ss_pred             CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHCCCeee-----cHHHHHHHhccCCEEEECCC
Confidence            456789999998 899999999999999999999987643211 111122221     24556778889999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.33  E-value=0.00091  Score=55.51  Aligned_cols=75  Identities=25%  Similarity=0.368  Sum_probs=51.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc----CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~vi~~  128 (200)
                      ..++.|||.||+|++|.+.++-+...| .+|+...+.+..+.... .....  ..|+.+++.++...+    ++|+|+.|
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~-lGAd~--vvdy~~~~~~e~~kk~~~~~~DvVlD~  232 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKK-LGADE--VVDYKDENVVELIKKYTGKGVDVVLDC  232 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHH-cCCcE--eecCCCHHHHHHHHhhcCCCccEEEEC
Confidence            467799999999999999999999999 45555444332221111 11122  247777666655554    59999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      .|.
T Consensus       233 vg~  235 (347)
T KOG1198|consen  233 VGG  235 (347)
T ss_pred             CCC
Confidence            986

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.33  E-value=0.0067  Score=49.55  Aligned_cols=101  Identities=16%  Similarity=0.191  Sum_probs=70.9

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------c--cC-C-CCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D--SW-A-NNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~--~~-~-~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      +|.|+|+ |.+|..++..|+.+|.  ++++++.+.+....      +  .. . ..+.+...|       .+.++++|+|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~~~aDiv   72 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-------YDDCADADII   72 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-------HHHhCCCCEE
Confidence            5789998 9999999999998874  78999987554211      1  01 1 134444333       3578899999


Q ss_pred             EEccccCCCC------cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFGSN------SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~------~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |.+||....+      ...+..|..-...+.+...+.+.+-++.+-|
T Consensus        73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs  119 (307)
T cd05290          73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT  119 (307)
T ss_pred             EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            9999964322      4556788888888888888887665555544

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.33  E-value=0.0038  Score=53.35  Aligned_cols=104  Identities=14%  Similarity=0.130  Sum_probs=71.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC-------CC--cEEEeecCCCCccc------cc---CCCCeeEEEccCCCHHHHHH
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR-------GL--TVASLSRSGRSSLR------DS---WANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~------~~---~~~~~~~~~~Dl~d~~~~~~  117 (200)
                      .-+|.|+|++|.+|.+++..|+..       |.  +++.++++.+....      ..   ...++.+...|       .+
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~-------ye  172 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP-------YE  172 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC-------HH
Confidence            459999999999999999999988       54  78888887665221      00   01122222211       45


Q ss_pred             HhcCCCEEEEccccCCC----CcccchhhHHHHHHHHHHHHH-cCCC-EEEEEec
Q 029008          118 ALDGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASE-KGVK-RFVYISA  166 (200)
Q Consensus       118 ~~~~~d~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~-~~~~-~~v~vSS  166 (200)
                      .++++|+||..+|....    ....++.|+.-...+.+...+ ++.+ .+|.+|.
T Consensus       173 ~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        173 VFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             HhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence            68899999999997432    245678888888888888888 5655 4554543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.33  E-value=0.0062  Score=43.43  Aligned_cols=97  Identities=19%  Similarity=0.286  Sum_probs=65.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc----------c-c--------------ccC-CCCeeEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS----------L-R--------------DSW-ANNVIWHQGN  108 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------~-~--------------~~~-~~~~~~~~~D  108 (200)
                      .++|+|.|+ |.+|..+++.|...|. ++++++...=..          . .              ... ..+++.+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            368999998 9999999999999997 788887653110          0 0              011 1256677777


Q ss_pred             CCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          109 LLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       109 l~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      + +.+.+.+.++++|+||.+...           ...-..+.+.|.+.+. .+|..+.
T Consensus        81 ~-~~~~~~~~~~~~d~vi~~~d~-----------~~~~~~l~~~~~~~~~-p~i~~~~  125 (135)
T PF00899_consen   81 I-DEENIEELLKDYDIVIDCVDS-----------LAARLLLNEICREYGI-PFIDAGV  125 (135)
T ss_dssp             C-SHHHHHHHHHTSSEEEEESSS-----------HHHHHHHHHHHHHTT--EEEEEEE
T ss_pred             c-ccccccccccCCCEEEEecCC-----------HHHHHHHHHHHHHcCC-CEEEEEe
Confidence            7 566778888999999997543           1222345667777765 6777765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.32  E-value=0.00067  Score=55.36  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      ++|.|+|+ |.+|..++..|++.|++|++.+|+++
T Consensus         3 ~~V~VIG~-G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGA-GLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECc-cHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            57999995 99999999999999999999999864

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.31  E-value=0.0016  Score=53.07  Aligned_cols=109  Identities=14%  Similarity=0.185  Sum_probs=64.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccC----CCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSW----ANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      |++|.|+|+ |.+|..++..++..|. +|++++++++.......    ..........+....++ +.++++|+||.++|
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            479999998 9999999999998875 89999986654211000    00000000111111123 34789999999998


Q ss_pred             cCCCCc----ccchhhHHHHHHHHHHHHHcCCCE-EEEEec
Q 029008          131 GFGSNS----YMYKINGTANINAIRAASEKGVKR-FVYISA  166 (200)
Q Consensus       131 ~~~~~~----~~~~~n~~~~~~~~~~a~~~~~~~-~v~vSS  166 (200)
                      ....+.    ..+.-|..-...+++...+...+. +|.+|.
T Consensus        80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN  120 (307)
T PRK06223         80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN  120 (307)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            543221    233456666666666666665443 555553

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=97.30  E-value=0.0016  Score=54.63  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      +++|+|.|+ |.+|+.++..+.+.|++|++++.+++.+....   --..+.+|+.|.+.+.++.+.+|+|..
T Consensus         2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~---ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV---ADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh---CceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            578999998 89999999999999999999987655432211   124566789999999999999998754

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.26  E-value=0.0014  Score=58.35  Aligned_cols=73  Identities=14%  Similarity=0.148  Sum_probs=59.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      ..+|+|.|. |.+|+.+++.|.++|+++++++.+++.-.. ....+..++.+|.+|++.++++ ++++|.+|-+.+
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~-~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~  473 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNL-MRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN  473 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHH-HHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence            468999997 999999999999999999999988765322 2234688999999999999875 568998888653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.26  E-value=0.0025  Score=54.56  Aligned_cols=73  Identities=18%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc---cccCCCCeeEEEccCCCHHHHHHHhc-CCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---RDSWANNVIWHQGNLLSSDSWKEALD-GVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~~ag  130 (200)
                      .+++++|||+++ +|.++++.|++.|++|.+.+++.....   ......++.+..++  ++..   .+. ++|.||++.|
T Consensus         4 ~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~--~~~~---~~~~~~d~vV~s~g   77 (447)
T PRK02472          4 QNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGS--HPLE---LLDEDFDLMVKNPG   77 (447)
T ss_pred             CCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCC--CCHH---HhcCcCCEEEECCC
Confidence            468999999965 999999999999999999987653311   11112345554433  2222   233 4999999998


Q ss_pred             cCC
Q 029008          131 GFG  133 (200)
Q Consensus       131 ~~~  133 (200)
                      ...
T Consensus        78 i~~   80 (447)
T PRK02472         78 IPY   80 (447)
T ss_pred             CCC
Confidence            643

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.25  E-value=0.001  Score=55.85  Aligned_cols=36  Identities=22%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      +..++|.|+||.|.+|..+++.|.+.|++|++.+|+
T Consensus        96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            466899999999999999999999999999999875

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.25  E-value=0.0022  Score=52.30  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccccc----CCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDS----WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++|.|+|+ |.+|..++..|+.+|+ +|++++...+......    ...........+.-..++++ ++++|+||-++|.
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence            58999997 9999999999999886 8999998644321110    00000000011111122333 6789999999996


Q ss_pred             CCCCc----ccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          132 FGSNS----YMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       132 ~~~~~----~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      ...+.    ..+..|..-...+++...+.+.+ .+|.+|.
T Consensus        80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN  119 (305)
T TIGR01763        80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN  119 (305)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            44321    34567777777778877766544 4555554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.24  E-value=0.0031  Score=49.26  Aligned_cols=99  Identities=18%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--c-----------------------cccCC-CCeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L-----------------------RDSWA-NNVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~-----------------------~~~~~-~~~~~~~  106 (200)
                      ....+|+|.|+ |++|.++++.|...|. ++++++.+.-..  .                       ....+ .+++.+.
T Consensus        19 L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~   97 (228)
T cd00757          19 LKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN   97 (228)
T ss_pred             HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence            35679999997 9999999999999997 677766542110  0                       00111 2455665


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .++ +.+.+.+.++++|+||.|....           ..-..+-+.|.+.++ .+|+.+.
T Consensus        98 ~~i-~~~~~~~~~~~~DvVi~~~d~~-----------~~r~~l~~~~~~~~i-p~i~~g~  144 (228)
T cd00757          98 ERL-DAENAEELIAGYDLVLDCTDNF-----------ATRYLINDACVKLGK-PLVSGAV  144 (228)
T ss_pred             cee-CHHHHHHHHhCCCEEEEcCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            555 3566778889999999986532           112345667777765 4666554

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.24  E-value=0.0013  Score=52.38  Aligned_cols=107  Identities=15%  Similarity=0.059  Sum_probs=67.2

Q ss_pred             EEEEccCchhHHHHHHHHHHCC----CcEEEeecCCCCcccccC--CCCeeE-EEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           59 LLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLRDSW--ANNVIW-HQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~--~~~~~~-~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      |.|+||+|.+|..++..|+..|    .+|.+++++++.......  ..-... ....+.-.++..+.++++|+||.++|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            5799999999999999999998    689999987644211000  000000 011121122346778999999999986


Q ss_pred             CCCC----cccchhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 029008          132 FGSN----SYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (200)
Q Consensus       132 ~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~-~v~vS  165 (200)
                      ...+    ......|+.-...+++.+.+.+.+- ++.+|
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t  119 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS  119 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            4322    2245566777777788887776554 44443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=97.23  E-value=0.012  Score=46.64  Aligned_cols=74  Identities=15%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~  132 (200)
                      ++++|+|.||| .=|+.+++.|.+.|++|++..-.....   .....+.++.+-+.|.+.+.+.+.  +++.||...-++
T Consensus         1 ~~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~---~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPf   76 (248)
T PRK08057          1 MMPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGG---PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPY   76 (248)
T ss_pred             CCceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCC---cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCcc
Confidence            46789999997 679999999999999988876655333   223467788888879999999986  699999976543

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.22  E-value=0.0014  Score=52.80  Aligned_cols=56  Identities=16%  Similarity=0.275  Sum_probs=45.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ...+++++|.|++|.+|+.++..|+++|+.|+++.|+.                      .++.+.++++|+||++.|
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t----------------------~~L~~~~~~aDIvI~AtG  211 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT----------------------QNLPELVKQADIIVGAVG  211 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc----------------------hhHHHHhccCCEEEEccC
Confidence            45789999999988899999999999999888876631                      124555678889988886

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.21  E-value=0.00077  Score=56.49  Aligned_cols=75  Identities=17%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+++|+|+ |.+|...++.|...|.+|++++|+.++.......-. ..+..+..+++.+.+.+.++|+||++++.
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g-~~v~~~~~~~~~l~~~l~~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG-GRIHTRYSNAYEIEDAVKRADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC-ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence            3467999997 999999999999999999999987544211100001 12334556778888899999999998854

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.21  E-value=0.00037  Score=56.12  Aligned_cols=73  Identities=16%  Similarity=0.213  Sum_probs=49.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccc--cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRD--SWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ...+++++|+|+ |++|++++..|...| .+|+++.|+.++....  ...... .+..++    +..+.+.++|+||++.
T Consensus       120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~----~~~~~~~~~DivInaT  193 (278)
T PRK00258        120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG-KAELDL----ELQEELADFDLIINAT  193 (278)
T ss_pred             CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecc----cchhccccCCEEEECC
Confidence            356789999997 999999999999999 6999999986542111  001100 011111    2245667899999997


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      ..
T Consensus       194 p~  195 (278)
T PRK00258        194 SA  195 (278)
T ss_pred             cC
Confidence            53

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.21  E-value=0.00052  Score=55.73  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++++|+|. |.+|+.++..|...|.+|++.+|+...... ....+.+++     +.+++.+.+.++|+||++..
T Consensus       150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~-~~~~G~~~~-----~~~~l~~~l~~aDiVI~t~p  219 (296)
T PRK08306        150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLAR-ITEMGLSPF-----HLSELAEEVGKIDIIFNTIP  219 (296)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHcCCeee-----cHHHHHHHhCCCCEEEECCC
Confidence            35789999997 889999999999999999999998544211 111223332     23456778889999999864

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.21  E-value=0.00048  Score=51.70  Aligned_cols=76  Identities=17%  Similarity=0.104  Sum_probs=51.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|.|. |.||+.+++.|...|.+|++.+|....... .....+        ...+++++++.+|+|+.+....
T Consensus        33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~~~~--------~~~~l~ell~~aDiv~~~~plt  102 (178)
T PF02826_consen   33 ELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEG-ADEFGV--------EYVSLDELLAQADIVSLHLPLT  102 (178)
T ss_dssp             -STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHH-HHHTTE--------EESSHHHHHHH-SEEEE-SSSS
T ss_pred             ccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhh-cccccc--------eeeehhhhcchhhhhhhhhccc
Confidence            457899999997 999999999999999999999998654320 000111        1235678888999999987754


Q ss_pred             CCCccc
Q 029008          133 GSNSYM  138 (200)
Q Consensus       133 ~~~~~~  138 (200)
                      .....+
T Consensus       103 ~~T~~l  108 (178)
T PF02826_consen  103 PETRGL  108 (178)
T ss_dssp             TTTTTS
T ss_pred             ccccee
Confidence            433333

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.21  E-value=0.0018  Score=52.89  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      ++|.|+|+ |.+|..++..|+.+|  .+|.+++++.+....      ..  ......+...   |   + +.++++|++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~---d---~-~~l~~aDiVi   72 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAG---D---Y-ADCKGADVVV   72 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeC---C---H-HHhCCCCEEE
Confidence            47999998 999999999999999  589999988654221      00  0011222222   2   2 3478999999


Q ss_pred             EccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       127 ~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                      .+++....+    ...+..|..-...+++.+.+.+.+-++.+-
T Consensus        73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~  115 (308)
T cd05292          73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV  115 (308)
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            999964322    234456766667777777766654444433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.20  E-value=0.00064  Score=52.04  Aligned_cols=39  Identities=18%  Similarity=0.257  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ...+|+++|+|. |.+|+++++.|.+.|++|++.+++.+.
T Consensus        25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~   63 (200)
T cd01075          25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEA   63 (200)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            357789999998 799999999999999999988877543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=97.17  E-value=0.0026  Score=54.78  Aligned_cols=75  Identities=19%  Similarity=0.152  Sum_probs=53.7

Q ss_pred             CCCCCeEEEEcc----------------CchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH
Q 029008           53 PPPSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK  116 (200)
Q Consensus        53 ~~~~~~ilVtGa----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~  116 (200)
                      +..+++|+||+|                +|.+|.+|++.+..+|++|+++.-....    ..+.+++++..+  ..+++.
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~----~~p~~v~~i~V~--ta~eM~  326 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDL----ADPQGVKVIHVE--SARQML  326 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCC----CCCCCceEEEec--CHHHHH
Confidence            468899999965                6899999999999999999998743221    123466766543  444444


Q ss_pred             HHhc---CCCEEEEccccCC
Q 029008          117 EALD---GVTAVISCVGGFG  133 (200)
Q Consensus       117 ~~~~---~~d~vi~~ag~~~  133 (200)
                      +++.   ..|++|++|++.+
T Consensus       327 ~av~~~~~~Di~I~aAAVaD  346 (475)
T PRK13982        327 AAVEAALPADIAIFAAAVAD  346 (475)
T ss_pred             HHHHhhCCCCEEEEeccccc
Confidence            4332   3799999999643

>PRK08223 hypothetical protein; Validated

Probab=97.17  E-value=0.005  Score=49.61  Aligned_cols=101  Identities=14%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--c--c---------------------ccCC-CCeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L--R---------------------DSWA-NNVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~--~---------------------~~~~-~~~~~~~  106 (200)
                      ....+|+|+|+ |++|..+++.|+..|. ++.+++.+.-+.  .  +                     ...+ -+++.+.
T Consensus        25 L~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~  103 (287)
T PRK08223         25 LRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP  103 (287)
T ss_pred             HhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            35679999998 9999999999999996 677777653110  0  0                     0011 2455565


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ..++ ++.+.++++++|+||.+.-.+         ++..-..+-++|.+.++ .+|+.+.
T Consensus       104 ~~l~-~~n~~~ll~~~DlVvD~~D~~---------~~~~r~~ln~~c~~~~i-P~V~~~~  152 (287)
T PRK08223        104 EGIG-KENADAFLDGVDVYVDGLDFF---------EFDARRLVFAACQQRGI-PALTAAP  152 (287)
T ss_pred             cccC-ccCHHHHHhCCCEEEECCCCC---------cHHHHHHHHHHHHHcCC-CEEEEec
Confidence            5554 456778888999998654211         11222455677888775 4666554

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.17  E-value=0.0045  Score=47.43  Aligned_cols=99  Identities=15%  Similarity=0.250  Sum_probs=65.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--c--------------------c--ccCCC--CeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L--------------------R--DSWAN--NVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~--------------------~--~~~~~--~~~~~~  106 (200)
                      ....+|+|.|+ |++|..+++.|...|. ++++++.+.-+.  .                    +  ....+  +++.+.
T Consensus        19 l~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~   97 (202)
T TIGR02356        19 LLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK   97 (202)
T ss_pred             hcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence            45679999997 9999999999999997 888888763110  0                    0  00112  344444


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .++ +.+.+.+.++++|+||.+....           ..-..+-+.|.+.++ .+|+.+.
T Consensus        98 ~~i-~~~~~~~~~~~~D~Vi~~~d~~-----------~~r~~l~~~~~~~~i-p~i~~~~  144 (202)
T TIGR02356        98 ERV-TAENLELLINNVDLVLDCTDNF-----------ATRYLINDACVALGT-PLISAAV  144 (202)
T ss_pred             hcC-CHHHHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            444 3456778889999999986431           122345667777765 4666664

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.16  E-value=0.0042  Score=50.76  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=39.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ++.+|.|.||+|++|..+++.|.++.+ ++..+..+...               |+.+   .+..++++|++|.+..
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------------~~~~---~~~~~~~~DvvFlalp   59 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------------DAAA---RRELLNAADVAILCLP   59 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------------cccC---chhhhcCCCEEEECCC
Confidence            456999999999999999999988874 55555433221               1111   2345567898888764

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.14  E-value=0.011  Score=48.34  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      .++|.|+|+ |.+|..++..|+..|.  ++++++.+.+....      ..  ......+...     .+++ .++++|+|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~-----~dy~-~~~~adiv   75 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD-----KDYS-VTANSKVV   75 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC-----CCHH-HhCCCCEE
Confidence            359999996 9999999999998874  78888887643211      00  0111123221     1233 37899999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      |.++|....+    ...+..|..-...+.+...+.+.+ .++.+|.
T Consensus        76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            9999964432    345677777777778888777655 4555543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.11  E-value=0.0014  Score=53.97  Aligned_cols=73  Identities=22%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .+++|+|+|+ |++|...++.+...|++|++++|++++.........-.++.  -.|++..+.+-+.+|++|.+++
T Consensus       166 pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~--~~~~~~~~~~~~~~d~ii~tv~  238 (339)
T COG1064         166 PGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVIN--SSDSDALEAVKEIADAIIDTVG  238 (339)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEE--cCCchhhHHhHhhCcEEEECCC
Confidence            4789999998 59999999999999999999999987643222222233333  2356666665556999999987

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.11  E-value=0.0023  Score=49.11  Aligned_cols=71  Identities=17%  Similarity=0.281  Sum_probs=49.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccC-CCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++|+|+|| |-+|...++.|++.|++|+++.+...+...... ...+.+..-++.     ...+.++|+||-+.+
T Consensus         8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~-----~~~l~~adlViaaT~   79 (202)
T PRK06718          8 LSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFE-----PSDIVDAFLVIAATN   79 (202)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCC-----hhhcCCceEEEEcCC
Confidence            46889999998 999999999999999999999865433221111 234555443332     234567888887643

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=97.11  E-value=0.0034  Score=52.83  Aligned_cols=71  Identities=18%  Similarity=0.355  Sum_probs=54.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a  129 (200)
                      ..|+|+|+|+ |.+|..+++.+.+.|++|++++.++....... ..  .++..|..|.+.+.++.+  ++|.|+...
T Consensus        11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~-ad--~~~~~~~~d~~~l~~~~~~~~id~vi~~~   83 (395)
T PRK09288         11 SATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQV-AH--RSHVIDMLDGDALRAVIEREKPDYIVPEI   83 (395)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHHh-hh--heEECCCCCHHHHHHHHHHhCCCEEEEee
Confidence            5679999997 78999999999999999999988764421111 11  246678889988888887  789888653

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.10  E-value=0.02  Score=43.87  Aligned_cols=73  Identities=10%  Similarity=0.107  Sum_probs=52.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecC---CCCccc---------------------ccCC-CCeeEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRS---GRSSLR---------------------DSWA-NNVIWHQG  107 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~~---------------------~~~~-~~~~~~~~  107 (200)
                      ...++|+|.|+ |++|..++..|+..|. ++++++.+   .+....                     ...+ .+++.+..
T Consensus        19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~   97 (200)
T TIGR02354        19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE   97 (200)
T ss_pred             HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence            35679999998 9999999999999998 68888877   211000                     0001 23555555


Q ss_pred             cCCCHHHHHHHhcCCCEEEEc
Q 029008          108 NLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus       108 Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      +++ .+.+.++++++|+||-+
T Consensus        98 ~i~-~~~~~~~~~~~DlVi~a  117 (200)
T TIGR02354        98 KIT-EENIDKFFKDADIVCEA  117 (200)
T ss_pred             eCC-HhHHHHHhcCCCEEEEC
Confidence            664 56678888899999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.10  E-value=0.0027  Score=52.45  Aligned_cols=68  Identities=15%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      +++|.|.|+ |.+|+-++..-...|++|++++-+++.+...   -.-..+.++.+|++.++++.+.+|+|=+
T Consensus         1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~---va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDADAPAAQ---VADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCCCchhh---cccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            478999998 9999999999999999999998776654321   1224566778899999999999999855

>PLN02928 oxidoreductase family protein

Probab=97.09  E-value=0.0026  Score=52.82  Aligned_cols=79  Identities=16%  Similarity=0.117  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc---CCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS---WANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ...++++.|.|. |.||+.+++.|...|.+|++.+|.........   ....+..+........++++++.++|+|+.+.
T Consensus       156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        156 TLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            357899999997 99999999999999999999988633211100   00011111101113457889999999999987


Q ss_pred             ccC
Q 029008          130 GGF  132 (200)
Q Consensus       130 g~~  132 (200)
                      ...
T Consensus       235 Plt  237 (347)
T PLN02928        235 TLT  237 (347)
T ss_pred             CCC
Confidence            643

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.08  E-value=0.0012  Score=53.70  Aligned_cols=74  Identities=26%  Similarity=0.214  Sum_probs=48.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCC-HHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+++|+|++|.+|..+++.+...|.+|+++.++.++...........++  |..+ .+.+.+. .++|++++++|.
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~d~v~~~~g~  236 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVI--DGSKFSEDVKKL-GGADVVIELVGS  236 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEE--ecHHHHHHHHhc-cCCCEEEECCCh
Confidence            467999999999999999999999999999988765432111101111222  2211 2223222 279999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.07  E-value=0.0027  Score=51.18  Aligned_cols=58  Identities=19%  Similarity=0.309  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...+++++|+|+++.+|+.++..|.++|+.|+++.++.                      .++.+.++++|+||...|..
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t----------------------~~l~~~~~~ADIVIsAvg~p  212 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS----------------------KDMASYLKDADVIVSAVGKP  212 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----------------------hhHHHHHhhCCEEEECCCCC
Confidence            35789999999999999999999999999999887641                      23567788899999988753

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.03  E-value=0.00045  Score=46.14  Aligned_cols=67  Identities=27%  Similarity=0.271  Sum_probs=44.4

Q ss_pred             eEEEEccCchhHHHHHHHHHHCC---CcEEEe-ecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRG---LTVASL-SRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g---~~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +|.|+|+ |.+|.+|++.|++.|   ++|.+. .|++++..+......+.+...|      ..++++..|+||.+.-+
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~advvilav~p   71 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADD------NEEAAQEADVVILAVKP   71 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEE------HHHHHHHTSEEEE-S-G
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCC------hHHhhccCCEEEEEECH
Confidence            5778875 999999999999999   899966 7776543221111223333222      45667789999998654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.02  E-value=0.0092  Score=49.84  Aligned_cols=71  Identities=21%  Similarity=0.336  Sum_probs=41.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC-CCc---EEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR-GLT---VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~-g~~---V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      |++|.|.||||++|+.+.+.++++ ...   +..+.............. -.....++.+++.    +.++|++|.+++.
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g-~~~~v~~~~~~~~----~~~~Divf~a~~~   75 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGG-KEGTLQDAFDIDA----LKKLDIIITCQGG   75 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCC-CcceEEecCChhH----hcCCCEEEECCCH
Confidence            368999999999999999955554 555   555544322211111111 1122234444432    4679999998864

>PRK10537 voltage-gated potassium channel; Provisional

Probab=97.02  E-value=0.0035  Score=52.91  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCV  129 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~a  129 (200)
                      ..+++|+|. |.+|+.++++|.++|.+|++++.+..   +.....+..++.+|.+|++.++++ +++++.++-+.
T Consensus       240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~~---~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t  310 (393)
T PRK10537        240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLGL---EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALR  310 (393)
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECchh---hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence            457999997 89999999999999999998886522   222345678999999999998864 56788888754

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.01  E-value=0.00036  Score=56.36  Aligned_cols=70  Identities=13%  Similarity=0.175  Sum_probs=48.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccc--cC---CCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD--SW---ANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--~~---~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ...++++|.|+ |+.|++++..|...|. +|++++|+.++....  ..   ...+.+..     .+++.+.+.++|+||+
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~-----~~~~~~~~~~aDiVIn  198 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATA-----GSDLAAALAAADGLVH  198 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEe-----ccchHhhhCCCCEEEE
Confidence            45689999998 8999999999999997 799999986542211  00   11122221     1234456678999999


Q ss_pred             cc
Q 029008          128 CV  129 (200)
Q Consensus       128 ~a  129 (200)
                      +.
T Consensus       199 aT  200 (284)
T PRK12549        199 AT  200 (284)
T ss_pred             CC
Confidence            94

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.01  E-value=0.017  Score=45.47  Aligned_cols=99  Identities=14%  Similarity=0.129  Sum_probs=62.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc----c--------------------ccCCC--CeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL----R--------------------DSWAN--NVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----~--------------------~~~~~--~~~~~~  106 (200)
                      ....+|+|.|+ |++|..+++.|...|. ++++++.+.-+..    +                    ....+  +++.+.
T Consensus        22 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~  100 (240)
T TIGR02355        22 LKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN  100 (240)
T ss_pred             HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            35679999998 9999999999999996 7777776532210    0                    00012  344444


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ..+ +.+.+.++++++|+||.+....           ..-..+-++|.+.++ .+|+.++
T Consensus       101 ~~i-~~~~~~~~~~~~DlVvd~~D~~-----------~~r~~ln~~~~~~~i-p~v~~~~  147 (240)
T TIGR02355       101 AKL-DDAELAALIAEHDIVVDCTDNV-----------EVRNQLNRQCFAAKV-PLVSGAA  147 (240)
T ss_pred             ccC-CHHHHHHHhhcCCEEEEcCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            434 3456778888999999875431           112345567777765 4555544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.01  E-value=0.0026  Score=51.51  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      +..+|+|.|+|.+|.+|+.++..|+++|+.|++..+..
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t  193 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS  193 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence            35789999999999999999999999999999986653

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.00  E-value=0.0037  Score=50.87  Aligned_cols=100  Identities=13%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             EEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc------ccCC--CCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           59 LLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR------DSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~------~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      |.|+|+ |++|..++..|+..|  .++++++++.+....      ....  ....+...  .|    .+.++++|+||.+
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l~~aDiVIit   73 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADAADADIVVIT   73 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHhCCCCEEEEc
Confidence            468897 899999999999988  689999987654211      0000  12222221  12    3478899999999


Q ss_pred             cccCCC----CcccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          129 VGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       129 ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      +|....    ....+..|+.-...+++..++.+.+ .+|.+|
T Consensus        74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            996432    2345667777777888888777655 444444

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.99  E-value=0.0013  Score=58.71  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=59.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      .++|+|.|. |.+|+.+++.|.++|+++++++.++++-.. ....+..++.+|.+|++.++++ ++++|.+|-+..
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~-~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~  473 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIET-LRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID  473 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHH-HHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence            468999997 999999999999999999999988765322 1234678999999999988864 567898888753

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.99  E-value=0.0012  Score=56.59  Aligned_cols=67  Identities=21%  Similarity=0.278  Sum_probs=46.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      |+|.|+||.|.+|..+++.|.+.|++|++.+|+.+.........++.+       ..+..+.+.++|+||.+..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~-------~~~~~e~~~~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY-------ANDNIDAAKDADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee-------ccCHHHHhccCCEEEEecC
Confidence            479999999999999999999999999999987544211111112211       1123455677888888765

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.98  E-value=0.0036  Score=51.31  Aligned_cols=97  Identities=15%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCC-CCcccccCCCCee-E--EEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG-RSSLRDSWANNVI-W--HQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~-~~~~~~~~~~~~~-~--~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ++++|.|.||+|+.|..|.+.|..+.+ ++...+.+. ..........+.. .  +....-|++.+  ..+++|+||.+.
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlal   78 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLAL   78 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEec
Confidence            467999999999999999999998854 665555433 1111111111111 1  22222233333  456799999986


Q ss_pred             ccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          130 GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       130 g~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .-.            ....++......|++ +|=.|.
T Consensus        79 Phg------------~s~~~v~~l~~~g~~-VIDLSa  102 (349)
T COG0002          79 PHG------------VSAELVPELLEAGCK-VIDLSA  102 (349)
T ss_pred             Cch------------hHHHHHHHHHhCCCe-EEECCc
Confidence            421            012345555555664 777776

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.98  E-value=0.0013  Score=55.91  Aligned_cols=72  Identities=15%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCC-CCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWA-NNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|.|+ |.+|+.+++.|...|. ++++..|+.++....... ....     +...+++...+..+|+||++.+.
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~-----~~~~~~l~~~l~~aDiVI~aT~a  252 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNAS-----AHYLSELPQLIKKADIIIAAVNV  252 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCe-----EecHHHHHHHhccCCEEEECcCC
Confidence            56789999998 9999999999999995 788888875542111100 1122     22335667888899999999875

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.98  E-value=0.0026  Score=48.88  Aligned_cols=71  Identities=23%  Similarity=0.301  Sum_probs=52.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++++|+|| |.+|..-++.|++.|++|++++.......... ...+++++..++..     ..+++++.||-+.+
T Consensus         7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~-----~dl~~~~lVi~at~   78 (205)
T TIGR01470         7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDA-----DILEGAFLVIAATD   78 (205)
T ss_pred             cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCH-----HHhCCcEEEEECCC
Confidence            46789999998 99999999999999999999987654322211 23478888888752     23567888877543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.98  E-value=0.018  Score=47.78  Aligned_cols=69  Identities=20%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHH-CCCc---EEEeecCCCCcc-cccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALD-RGLT---VASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~-~g~~---V~~~~r~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+|.|.||||++|+.+++.|.+ ...+   +..+......-. .........+...   |++    .+.++|++|.+++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~---~~~----~~~~~Divf~a~~   77 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEA---KIN----SFEGVDIAFFSAG   77 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeC---CHH----HhcCCCEEEECCC
Confidence            46899999999999999999995 4555   544543322111 1111112233222   333    2467999999876


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus        78 ~   78 (347)
T PRK06728         78 G   78 (347)
T ss_pred             h
Confidence            4

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.98  E-value=0.00087  Score=54.09  Aligned_cols=75  Identities=13%  Similarity=0.066  Sum_probs=49.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccc--cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD--SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++++|.|+ |+.|++++..|.+.|. +|+++.|+.++....  .......+..  +...+++...+.++|+|||+..
T Consensus       123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~--~~~~~~~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITR--LEGDSGGLAIEKAAEVLVSTVP  199 (282)
T ss_pred             cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCccee--ccchhhhhhcccCCCEEEECCC
Confidence            35789999997 9999999999999997 799999886543211  0011111111  1112334556678999999976


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus       200 ~  200 (282)
T TIGR01809       200 A  200 (282)
T ss_pred             C
Confidence            4

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.98  E-value=0.0014  Score=53.03  Aligned_cols=75  Identities=17%  Similarity=0.157  Sum_probs=56.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .++++.|+|+.| +|.--++...+.|++|+++++...+..+....-+.+++..-..|++.++++.+..|.++|++.
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~  255 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVS  255 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeee
Confidence            578999999976 999999999999999999999865533333333555554333488888888887777777765

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.96  E-value=0.0024  Score=54.33  Aligned_cols=68  Identities=16%  Similarity=0.144  Sum_probs=49.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|+|. |.+|+.+++.|...|.+|++.++++.+..+.. ..++++.     +   ++++++++|+||.+.|.
T Consensus       210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-~~G~~v~-----~---l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAA-MDGFRVM-----T---MEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-hcCCEec-----C---HHHHHhCCCEEEECCCC
Confidence            46889999997 99999999999999999999988765532211 1122221     1   34566788888887763

>PRK08328 hypothetical protein; Provisional

Probab=96.94  E-value=0.021  Score=44.66  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=62.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc--------------------------cccCC-CCeeEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL--------------------------RDSWA-NNVIWHQ  106 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--------------------------~~~~~-~~~~~~~  106 (200)
                      ...+|+|.|+ |++|.++++.|...|. ++++++.+.-+..                          ....+ -.++.+.
T Consensus        26 ~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~  104 (231)
T PRK08328         26 KKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV  104 (231)
T ss_pred             hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence            5679999998 9999999999999996 6777775431100                          00011 1344445


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ..+ +++.+.++++++|+||.+....           ..-..+-++|.+.++ .+|+.+.
T Consensus       105 ~~~-~~~~~~~~l~~~D~Vid~~d~~-----------~~r~~l~~~~~~~~i-p~i~g~~  151 (231)
T PRK08328        105 GRL-SEENIDEVLKGVDVIVDCLDNF-----------ETRYLLDDYAHKKGI-PLVHGAV  151 (231)
T ss_pred             ccC-CHHHHHHHHhcCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEee
Confidence            444 4555777888899998875331           112334566777765 4666554

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.93  E-value=0.012  Score=49.17  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=64.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc----cc---------------------ccCC-CCeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS----LR---------------------DSWA-NNVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~----~~---------------------~~~~-~~~~~~~  106 (200)
                      ....+|+|.|+ |++|..+++.|+..|. ++++++.+.-..    .+                     ...+ -+++.+.
T Consensus        26 L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~  104 (355)
T PRK05597         26 LFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV  104 (355)
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence            35679999998 9999999999999996 777777653110    00                     0111 2455555


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ..++ .+...++++++|+||.+...+           ..-..+-++|.+.++ .+|+.+.
T Consensus       105 ~~i~-~~~~~~~~~~~DvVvd~~d~~-----------~~r~~~n~~c~~~~i-p~v~~~~  151 (355)
T PRK05597        105 RRLT-WSNALDELRDADVILDGSDNF-----------DTRHLASWAAARLGI-PHVWASI  151 (355)
T ss_pred             eecC-HHHHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEE
Confidence            5654 456677888999999986421           122335567777765 4666654

>PLN02602 lactate dehydrogenase

Probab=96.93  E-value=0.021  Score=47.46  Aligned_cols=102  Identities=16%  Similarity=0.133  Sum_probs=67.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      ++|.|+|+ |.+|..++..|+..|.  ++.+++.+.+....      ..  ......+...  .|   + +.++++|+||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d---y-~~~~daDiVV  110 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS--TD---Y-AVTAGSDLCI  110 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC--CC---H-HHhCCCCEEE
Confidence            69999996 9999999999998874  78888887644211      00  0112222211  12   3 3488999999


Q ss_pred             EccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       127 ~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      .+||....+    ...+..|..-...+++...+.+.+ .+|.+|
T Consensus       111 itAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        111 VTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            999975322    345667777777778888777655 455555

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.92  E-value=0.0017  Score=55.28  Aligned_cols=72  Identities=19%  Similarity=0.191  Sum_probs=51.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|+|+ |.+|..+++.|...| .+|++.+|+.++.......-+...+     +.+++.+.+.++|+||.+.+.
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i-----~~~~l~~~l~~aDvVi~aT~s  250 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAV-----KFEDLEEYLAEADIVISSTGA  250 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEe-----eHHHHHHHHhhCCEEEECCCC
Confidence            46789999997 999999999999999 6899999886542211111111222     234567778899999999764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.90  E-value=0.0015  Score=52.30  Aligned_cols=70  Identities=14%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCC--CCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+++++|+|+ |++|++++..|++.|++|++.+|+.++..+  ....  ..+...  ++.+     ..+.++|+||++.
T Consensus       115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~--~~~~-----~~~~~~DivInat  186 (270)
T TIGR00507       115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAF--SMDE-----LPLHRVDLIINAT  186 (270)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEe--chhh-----hcccCccEEEECC
Confidence            45689999998 899999999999999999999887544211  0000  112222  1111     1245799999998


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      +.
T Consensus       187 p~  188 (270)
T TIGR00507       187 SA  188 (270)
T ss_pred             CC
Confidence            74

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.90  E-value=0.0056  Score=45.04  Aligned_cols=68  Identities=13%  Similarity=0.297  Sum_probs=45.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+++|+|.|| |-+|...++.|++.|++|++++.........  ...+.+..-.+. +    .-+++.|.||-+.
T Consensus        11 l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp~~~~~l~~--l~~i~~~~~~~~-~----~dl~~a~lViaaT   78 (157)
T PRK06719         11 LHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSPEICKEMKE--LPYITWKQKTFS-N----DDIKDAHLIYAAT   78 (157)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCccCHHHHh--ccCcEEEecccC-h----hcCCCceEEEECC
Confidence            47899999998 9999999999999999999985332221111  123444433332 2    2356778887753

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.90  E-value=0.0035  Score=51.15  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ++++|.|.|+ |.+|.++++.|.+.|++|.+.+|+...
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~~~~   39 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGHRVRVWSRRSGL   39 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            4568999997 999999999999999999999887543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.89  E-value=0.031  Score=40.18  Aligned_cols=95  Identities=20%  Similarity=0.253  Sum_probs=61.2

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc----------c---------------ccC-CCCeeEEEccCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL----------R---------------DSW-ANNVIWHQGNLL  110 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----------~---------------~~~-~~~~~~~~~Dl~  110 (200)
                      +|+|.|+ |++|..+++.|...|. ++++++.+.-...          .               ... .-+++.+..++.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            5899997 9999999999999997 6888876531100          0               001 123445555554


Q ss_pred             CHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       111 d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +. ...+.++++|+||.+....           .....+.+.|++.++ .+|..++
T Consensus        80 ~~-~~~~~~~~~diVi~~~d~~-----------~~~~~l~~~~~~~~i-~~i~~~~  122 (143)
T cd01483          80 ED-NLDDFLDGVDLVIDAIDNI-----------AVRRALNRACKELGI-PVIDAGG  122 (143)
T ss_pred             hh-hHHHHhcCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEcC
Confidence            33 3467778899999876431           223456778888765 4665555

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.87  E-value=0.016  Score=48.75  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-c----EEE----eecCCCCccc------c---cCCCCeeEEEccCCCHHHHHH
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-T----VAS----LSRSGRSSLR------D---SWANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~----V~~----~~r~~~~~~~------~---~~~~~~~~~~~Dl~d~~~~~~  117 (200)
                      .-+|.|+|++|.+|..++..|..+|. .    |.+    ++++.+....      .   ....++.+...|       .+
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~-------y~  116 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP-------YE  116 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC-------HH
Confidence            46999999999999999999998874 2    333    2555443111      0   001122222211       46


Q ss_pred             HhcCCCEEEEccccCCCC----cccchhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 029008          118 ALDGVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (200)
Q Consensus       118 ~~~~~d~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~-~~-~~v~vSS  166 (200)
                      .++++|+||.+||....+    ...+..|+.-...+.+...++. .. .+|.+|.
T Consensus       117 ~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN  171 (387)
T TIGR01757       117 VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN  171 (387)
T ss_pred             HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            788999999999975422    3456778888888888887743 44 4555553

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=96.87  E-value=0.013  Score=50.13  Aligned_cols=104  Identities=6%  Similarity=-0.006  Sum_probs=67.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC---CC----cEEEeecCCCCc-cc-------c---cCCCCeeEEEccCCCHHHHHH
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR---GL----TVASLSRSGRSS-LR-------D---SWANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~---g~----~V~~~~r~~~~~-~~-------~---~~~~~~~~~~~Dl~d~~~~~~  117 (200)
                      .-+|+||||+|.||.+|+-.+++-   |.    .+++++...... .+       .   .....+.+.. |      -.+
T Consensus       123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~-~------~~e  195 (452)
T cd05295         123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT-D------LDV  195 (452)
T ss_pred             ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE-C------CHH
Confidence            468999999999999999998873   32    345555531111 10       0   0112233332 2      256


Q ss_pred             HhcCCCEEEEccccCCC----CcccchhhHHHHHHHHHHHHHcCC--CEEEEEec
Q 029008          118 ALDGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKGV--KRFVYISA  166 (200)
Q Consensus       118 ~~~~~d~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~--~~~v~vSS  166 (200)
                      .++++|+||.++|....    ....++.|..-.....++..+.+.  .+++.+.|
T Consensus       196 a~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t  250 (452)
T cd05295         196 AFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR  250 (452)
T ss_pred             HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            78899999999996432    234667788777788888877766  56666664

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.86  E-value=0.017  Score=45.63  Aligned_cols=99  Identities=18%  Similarity=0.148  Sum_probs=63.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--c-----------------------cccCC-CCeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L-----------------------RDSWA-NNVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~-----------------------~~~~~-~~~~~~~  106 (200)
                      ....+|+|.|+ |++|..+++.|+..|. ++++++.+.-..  .                       ....+ .+++.+.
T Consensus        30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~  108 (245)
T PRK05690         30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN  108 (245)
T ss_pred             hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            45679999998 9999999999999996 777776542110  0                       00011 2455555


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ..++ ++.+.+.++++|+||.+....           ..-..+-++|.+.++ .+|+.+.
T Consensus       109 ~~i~-~~~~~~~~~~~DiVi~~~D~~-----------~~r~~ln~~~~~~~i-p~v~~~~  155 (245)
T PRK05690        109 ARLD-DDELAALIAGHDLVLDCTDNV-----------ATRNQLNRACFAAKK-PLVSGAA  155 (245)
T ss_pred             ccCC-HHHHHHHHhcCCEEEecCCCH-----------HHHHHHHHHHHHhCC-EEEEeee
Confidence            5553 556778889999999985321           112345566777664 4665443

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.85  E-value=0.0081  Score=49.65  Aligned_cols=70  Identities=13%  Similarity=0.170  Sum_probs=41.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCCcccccCCC-CeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWAN-NVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      +..+|.|.||||++|..+++.|.++.|   ++..+..+.+.-....... ...+-  |+   +  +..+.++|++|.+++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~--~~---~--~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ--DA---A--EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE--eC---c--hhhccCCCEEEECCC
Confidence            456999999999999999999998644   5555544322211110111 11111  22   1  123467899999875


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus        76 ~   76 (336)
T PRK08040         76 R   76 (336)
T ss_pred             H
Confidence            4

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=96.85  E-value=0.0093  Score=48.39  Aligned_cols=97  Identities=25%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH---h--cCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA---L--DGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~--~~~d~vi~~a  129 (200)
                      .+.+++|+|+++.+|..+++.+...|++|++++++..+..... ..... ...|..+.+..+.+   .  .++|.+++++
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  243 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-ELGAD-YVIDYRKEDFVREVRELTGKRGVDVVVEHV  243 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCC-eEEecCChHHHHHHHHHhCCCCCcEEEECC
Confidence            4679999999999999999999999999999887654321111 01111 12355554433332   2  2589999998


Q ss_pred             ccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          130 GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       130 g~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      |...            ....++.++..  ++++.+++.
T Consensus       244 g~~~------------~~~~~~~l~~~--G~~v~~~~~  267 (342)
T cd08266         244 GAAT------------WEKSLKSLARG--GRLVTCGAT  267 (342)
T ss_pred             cHHH------------HHHHHHHhhcC--CEEEEEecC
Confidence            7410            11233444332  578888764

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.85  E-value=0.016  Score=49.67  Aligned_cols=73  Identities=18%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc-ccccC--CCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-LRDSW--ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+++|+|+|. |..|.++++.|.++|++|.+.+...... .....  ..++.++.+...     ...+.++|.||...|.
T Consensus         4 ~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~-----~~~~~~~d~vv~spgi   77 (445)
T PRK04308          4 QNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLK-----DALDNGFDILALSPGI   77 (445)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCC-----HHHHhCCCEEEECCCC
Confidence            4679999998 7999999999999999999988765432 11111  135666554422     1244679999999887


Q ss_pred             CC
Q 029008          132 FG  133 (200)
Q Consensus       132 ~~  133 (200)
                      ..
T Consensus        78 ~~   79 (445)
T PRK04308         78 SE   79 (445)
T ss_pred             CC
Confidence            53

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.85  E-value=0.01  Score=48.37  Aligned_cols=56  Identities=20%  Similarity=0.311  Sum_probs=37.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .+|.|.|++|+.|..+++.|....+ ++..+.-+..               .+   +.+.+++++++|++|.+.+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------------~~---~~~~~~~~~~~D~vFlalp   58 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------------KD---AAERAKLLNAADVAILCLP   58 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------------cC---cCCHhHhhcCCCEEEECCC
Confidence            3799999999999999999998754 5555543211               01   1123355567888887764

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.85  E-value=0.017  Score=44.63  Aligned_cols=98  Identities=16%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--cc----------------------ccCC-CCeeEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWA-NNVIWHQGN  108 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~~----------------------~~~~-~~~~~~~~D  108 (200)
                      ...+|+|.|+ |++|..+++.|...|. ++++++.+.-..  ..                      ...+ .+++.+...
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~  105 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK  105 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence            5679999997 9999999999999997 588887762110  00                      0011 234455555


Q ss_pred             CCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHc-CCCEEEEEec
Q 029008          109 LLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEK-GVKRFVYISA  166 (200)
Q Consensus       109 l~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS  166 (200)
                      ++ .+.+.+.++++|+||.|...   +        ..-..+.+.|.+. ++ .+|+.+.
T Consensus       106 i~-~~~~~~~~~~~DvVI~a~D~---~--------~~r~~l~~~~~~~~~~-p~I~~~~  151 (212)
T PRK08644        106 ID-EDNIEELFKDCDIVVEAFDN---A--------ETKAMLVETVLEHPGK-KLVAASG  151 (212)
T ss_pred             cC-HHHHHHHHcCCCEEEECCCC---H--------HHHHHHHHHHHHhCCC-CEEEeeh
Confidence            54 35567788899999987421   1        1223455666666 54 5666543

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.83  E-value=0.011  Score=49.61  Aligned_cols=98  Identities=19%  Similarity=0.205  Sum_probs=63.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCC------------------ccc-------ccCC-CCeeEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS------------------SLR-------DSWA-NNVIWHQG  107 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~------------------~~~-------~~~~-~~~~~~~~  107 (200)
                      ..++|+|.|+ |++|..+++.|+..|. ++++++++.-.                  ..+       ...+ .+++.+..
T Consensus       134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            4568999987 9999999999999997 78888876210                  000       0011 13444444


Q ss_pred             cCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       108 Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .+ +.+.+.++++++|+||.+....           ..-..+-++|.+.++ .+|+.+.
T Consensus       213 ~~-~~~~~~~~~~~~D~Vv~~~d~~-----------~~r~~ln~~~~~~~i-p~i~~~~  258 (376)
T PRK08762        213 RV-TSDNVEALLQDVDVVVDGADNF-----------PTRYLLNDACVKLGK-PLVYGAV  258 (376)
T ss_pred             cC-ChHHHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            44 3456778888999999986432           111235667777775 5666654

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.82  E-value=0.0025  Score=54.36  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=51.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|+|+ |.+|..+++.|...|. +|++.+|+.++.......-+.     ++.+.+++.+.+.++|+||.+.+.
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~-----~~~~~~~~~~~l~~aDvVI~aT~s  252 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG-----EAIPLDELPEALAEADIVISSTGA  252 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-----cEeeHHHHHHHhccCCEEEECCCC
Confidence            46789999997 9999999999999997 788888876542211100111     222335566778899999999765

>PRK06487 glycerate dehydrogenase; Provisional

Probab=96.82  E-value=0.0056  Score=50.25  Aligned_cols=64  Identities=23%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|.|- |.||+.+++.|..-|.+|++.+|.....       ..        +..+++++++..|+|+.+....
T Consensus       145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~~~~~-------~~--------~~~~l~ell~~sDiv~l~lPlt  208 (317)
T PRK06487        145 ELEGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLPGRPA-------RP--------DRLPLDELLPQVDALTLHCPLT  208 (317)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCCcc-------cc--------cccCHHHHHHhCCEEEECCCCC
Confidence            357899999997 9999999999999999999887752210       11        1225788999999998877643

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.82  E-value=0.0019  Score=49.45  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ||++.|.| +|.+|..++++|.+.||+|++..|+.++
T Consensus         1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~~   36 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGPK   36 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCChh
Confidence            35566665 6999999999999999999999777654

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.82  E-value=0.0042  Score=46.46  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=48.7

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCC---Ccc---------------------cccCC-CCeeEEEccCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR---SSL---------------------RDSWA-NNVIWHQGNLLS  111 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~---~~~---------------------~~~~~-~~~~~~~~Dl~d  111 (200)
                      +|+|.|+ |++|..+++.|...|. ++++++.+.-   ...                     ....+ .+++.+...+. 
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~-   78 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID-   78 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC-
Confidence            5899997 9999999999999998 5888887641   100                     00011 24555555553 


Q ss_pred             HHHHHHHhcCCCEEEEcc
Q 029008          112 SDSWKEALDGVTAVISCV  129 (200)
Q Consensus       112 ~~~~~~~~~~~d~vi~~a  129 (200)
                      .+.+.+.++++|+||.+.
T Consensus        79 ~~~~~~~l~~~DlVi~~~   96 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAF   96 (174)
T ss_pred             hhhHHHHhcCCCEEEECC
Confidence            456778888999999874

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.81  E-value=0.016  Score=50.23  Aligned_cols=72  Identities=15%  Similarity=0.059  Sum_probs=51.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc----cccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+++|+|+|+ |++|..+++.|.++|++|++++++.....    ......+++++.++-..      ...++|.||...
T Consensus        14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~------~~~~~D~Vv~s~   86 (480)
T PRK01438         14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT------LPEDTDLVVTSP   86 (480)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc------ccCCCCEEEECC
Confidence            35679999997 99999999999999999999986643211    11223466666554221      345689999988


Q ss_pred             ccC
Q 029008          130 GGF  132 (200)
Q Consensus       130 g~~  132 (200)
                      |..
T Consensus        87 Gi~   89 (480)
T PRK01438         87 GWR   89 (480)
T ss_pred             CcC
Confidence            864

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=96.80  E-value=0.0069  Score=50.72  Aligned_cols=68  Identities=21%  Similarity=0.338  Sum_probs=52.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcc
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCV  129 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a  129 (200)
                      +|+|.|+ |.+|..+++.+.+.|++|++++.++....... .+  ..+..|..|++.+.++.+  ++|+|+...
T Consensus         1 kililG~-g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~-ad--~~~~~~~~d~~~l~~~~~~~~id~v~~~~   70 (380)
T TIGR01142         1 RVLLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQV-AH--RSYVINMLDGDALRAVIEREKPDYIVPEI   70 (380)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhhh-Cc--eEEEcCCCCHHHHHHHHHHhCCCEEEecc
Confidence            5899996 99999999999999999999998765432211 11  345678889999988887  699988654

This enzyme is an alternative to PurN (TIGR00639)

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.78  E-value=0.0019  Score=52.89  Aligned_cols=74  Identities=20%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+++|+|.|+ |.+|..+++.|...| .+|++++|+.++..+....-+..+     .+.+++.+.+.++|+||.+.+..
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~-----~~~~~~~~~l~~aDvVi~at~~~  249 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNA-----VPLDELLELLNEADVVISATGAP  249 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeE-----EeHHHHHHHHhcCCEEEECCCCC
Confidence            46789999997 999999999999876 578888887654221111111222     23345677788899999998764


Q ss_pred             C
Q 029008          133 G  133 (200)
Q Consensus       133 ~  133 (200)
                      .
T Consensus       250 ~  250 (311)
T cd05213         250 H  250 (311)
T ss_pred             c
Confidence            3

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.78  E-value=0.011  Score=50.37  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=32.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      +++|.|+|. |++|..++..|++.|++|++.+++++.
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~~V~~~D~~~~~   38 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQKQVIGVDINQHA   38 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCCEEEEEeCCHHH
Confidence            368999996 999999999999999999999988654

>PLN02256 arogenate dehydrogenase

Probab=96.75  E-value=0.0038  Score=50.94  Aligned_cols=69  Identities=20%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh-cCCCEEEEccc
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-DGVTAVISCVG  130 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~vi~~ag  130 (200)
                      .+..+++|.|+|. |.+|..+++.|.+.|++|++.+++.....  ....++..    ..+   .++++ .++|+||.+..
T Consensus        32 ~~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~~~d~~~~~~~--a~~~gv~~----~~~---~~e~~~~~aDvVilavp  101 (304)
T PLN02256         32 EKSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVLATSRSDYSDI--AAELGVSF----FRD---PDDFCEEHPDVVLLCTS  101 (304)
T ss_pred             ccCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECccHHHH--HHHcCCee----eCC---HHHHhhCCCCEEEEecC
Confidence            3456789999995 99999999999999999999988753211  11112221    223   23333 46899998865

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.74  E-value=0.0059  Score=49.52  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEee
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLS   87 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~   87 (200)
                      +..+|+|+|+|.++.+|..++..|+++|+.|++..
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~  189 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH  189 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence            35789999999999999999999999999999884

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.74  E-value=0.0053  Score=52.75  Aligned_cols=69  Identities=13%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+++++|+|. |.+|+.+++.|...|.+|++..+++....+.. ..++++.        .++++++.+|+||.+.|.
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-~~G~~~~--------~leell~~ADIVI~atGt  319 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAA-MEGYQVV--------TLEDVVETADIFVTATGN  319 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-hcCceec--------cHHHHHhcCCEEEECCCc
Confidence            357899999997 89999999999999999999887755432111 1233222        245677889999988763

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.74  E-value=0.017  Score=47.97  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC-CcEEEeecC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRS   89 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~   89 (200)
                      ++|.|+|++|++|+.+++.|..++ .++..+..+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~   34 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS   34 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence            479999999999999999998876 477777433

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.73  E-value=0.0089  Score=43.09  Aligned_cols=58  Identities=21%  Similarity=0.189  Sum_probs=47.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      +..+++|.|.|.+.-+|..++..|.++|..|....++..                      ++++..+++|+||-..|..
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~----------------------~l~~~v~~ADIVvsAtg~~   82 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI----------------------QLQSKVHDADVVVVGSPKP   82 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc----------------------CHHHHHhhCCEEEEecCCC
Confidence            467899999999999999999999999999988765421                      2456778889998887753

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.72  E-value=0.00064  Score=50.25  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      |++|.++|- |-+|..+++.|++.|++|++.+|++++
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~   36 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEK   36 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHH
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhh
Confidence            579999997 999999999999999999999988544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=96.69  E-value=0.0038  Score=51.43  Aligned_cols=73  Identities=29%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCe-eEEEccCCCH---HHHHHHhc--CCCEEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNV-IWHQGNLLSS---DSWKEALD--GVTAVISCV  129 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~Dl~d~---~~~~~~~~--~~d~vi~~a  129 (200)
                      +.++||+||+|++|...++.+...|+.++++..+.++.. ....... .++  |..+.   +.+.++..  ++|+|+.+.
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~vi--~y~~~~~~~~v~~~t~g~gvDvv~D~v  219 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHVI--NYREEDFVEQVRELTGGKGVDVVLDTV  219 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhcCCCEEE--cCCcccHHHHHHHHcCCCCceEEEECC
Confidence            789999999999999999999999977666666544322 1111121 222  23333   33444443  589999998


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       220 G~  221 (326)
T COG0604         220 GG  221 (326)
T ss_pred             CH
Confidence            85

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=96.69  E-value=0.0033  Score=51.64  Aligned_cols=76  Identities=20%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH----HHHHHHh-cCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS----DSWKEAL-DGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~-~~~d~vi~~a  129 (200)
                      .+.+++|+|++|.+|..+++.+...|.+|++++++.++.......-++..+ .|..+.    +.+.+.. .++|+++.+.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~i~~~~~~gvd~v~d~~  229 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDA-FNYKEEPDLDAALKRYFPNGIDIYFDNV  229 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCcee-EEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence            467999999999999999999999999999888775442111100122111 222221    2223322 3689999987


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       230 g~  231 (338)
T cd08295         230 GG  231 (338)
T ss_pred             CH
Confidence            74

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.69  E-value=0.0025  Score=49.45  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      |+|.|+||+|.+|..++..|.+.|++|.+.+|++++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~   36 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEK   36 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHH
Confidence            479999988999999999999999999999887644

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.68  E-value=0.023  Score=48.27  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=47.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCC------CCee-----EE-EccCCCHHHHHHHhcCCCE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA------NNVI-----WH-QGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~------~~~~-----~~-~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ++|.|+|. |++|..++..|++.|++|++.+++.++.......      .+++     .+ .+.+.-..++.++++++|+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~adv   79 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADV   79 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCE
Confidence            37899996 9999999999999999999999876542110000      0000     00 0001111234556788999


Q ss_pred             EEEccccC
Q 029008          125 VISCVGGF  132 (200)
Q Consensus       125 vi~~ag~~  132 (200)
                      ||-+.+..
T Consensus        80 vii~vpt~   87 (411)
T TIGR03026        80 IIICVPTP   87 (411)
T ss_pred             EEEEeCCC
Confidence            99998753

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.67  E-value=0.0083  Score=51.89  Aligned_cols=110  Identities=15%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcccccCCCCeeEEE-----------c-cCCCHHHHHHHhcC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQ-----------G-NLLSSDSWKEALDG  121 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~-----------~-Dl~d~~~~~~~~~~  121 (200)
                      +|+|.|.|. |++|..++-.|++.|  ++|++++.++++-.. .......+..           . .+.-..++.+++++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~-l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDA-WNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHH-HHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence            468999986 999999999999985  789999987644111 0000000000           0 01111223556778


Q ss_pred             CCEEEEccccCCCCc---ccchhhHHHHHHHHHHHHHc-CCCEEEEEecc
Q 029008          122 VTAVISCVGGFGSNS---YMYKINGTANINAIRAASEK-GVKRFVYISAA  167 (200)
Q Consensus       122 ~d~vi~~ag~~~~~~---~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~  167 (200)
                      +|++|-|.+.....+   .....+.......++...+. ....+|.+.|.
T Consensus        79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST  128 (473)
T PLN02353         79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST  128 (473)
T ss_pred             CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            999999988433211   11233444444444444332 22356665553

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.66  E-value=0.011  Score=48.51  Aligned_cols=67  Identities=19%  Similarity=0.258  Sum_probs=51.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..++++.|.|- |.||+.+++.|...|.+|++.++..+..      ..+..+    ...++++++++++|+|+.+...
T Consensus       134 l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~------~~~~~~----~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        134 REDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSW------PGVQSF----AGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCC------CCceee----cccccHHHHHhcCCEEEECCCC
Confidence            46789999996 9999999999999999999988754331      111111    1345688999999999998764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.66  E-value=0.0016  Score=47.89  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=45.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+|+++|+|- |.+|+.+++.|...|.+|++...++-+..+.. ..++++.        .+++++...|++|.+.|.
T Consensus        21 l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-~dGf~v~--------~~~~a~~~adi~vtaTG~   88 (162)
T PF00670_consen   21 LAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAA-MDGFEVM--------TLEEALRDADIFVTATGN   88 (162)
T ss_dssp             -TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-HTT-EEE---------HHHHTTT-SEEEE-SSS
T ss_pred             eCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhh-hcCcEec--------CHHHHHhhCCEEEECCCC
Confidence            56899999997 99999999999999999999998765533211 2344433        245677788888887764

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.66  E-value=0.012  Score=43.42  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=41.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +..+|+++|.|.+..+|+.++..|.++|+.|+......                      .++++..+..|+||-.+|.
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T----------------------~~l~~~~~~ADIVVsa~G~   89 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT----------------------KNLQEITRRADIVVSAVGK   89 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS----------------------SSHHHHHTTSSEEEE-SSS
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC----------------------CcccceeeeccEEeeeecc
Confidence            36789999999999999999999999999998865542                      1245666778888887774

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.028  Score=48.14  Aligned_cols=105  Identities=10%  Similarity=0.015  Sum_probs=62.0

Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCcccc
Q 029008           60 LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMY  139 (200)
Q Consensus        60 lVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~  139 (200)
                      +|+||+|.+|.++++.|...|++|+...+...+... ....++..+..|.+..++.+++.                    
T Consensus        42 ~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~l~--------------------  100 (450)
T PRK08261         42 VLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA-GWGDRFGALVFDATGITDPADLK--------------------  100 (450)
T ss_pred             eEEccCchhHHHHHHHHhhCCCeeeecCcccccccc-CcCCcccEEEEECCCCCCHHHHH--------------------
Confidence            388888999999999999999999987655432111 11223443334544433322211                    


Q ss_pred             hhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          140 KINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       140 ~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                           +...+++++.+.  ...+||++++.....   ....|+.+|++++.+++..
T Consensus       101 -----~~~~~~~~~l~~l~~~griv~i~s~~~~~---~~~~~~~akaal~gl~rsl  148 (450)
T PRK08261        101 -----ALYEFFHPVLRSLAPCGRVVVLGRPPEAA---ADPAAAAAQRALEGFTRSL  148 (450)
T ss_pred             -----HHHHHHHHHHHhccCCCEEEEEccccccC---CchHHHHHHHHHHHHHHHH
Confidence                 111222222221  235899999853221   2235999999999988863

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.65  E-value=0.015  Score=47.78  Aligned_cols=75  Identities=13%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----------ccCCCCe--eEEEccCCCHHHHHHHhcCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----------DSWANNV--IWHQGNLLSSDSWKEALDGV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~~~~--~~~~~Dl~d~~~~~~~~~~~  122 (200)
                      ..++|.|+|+ |-+|..++..|+..|++|++.+++++....          .....+.  ......+.-..++++++.++
T Consensus         6 ~i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a   84 (321)
T PRK07066          6 DIKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA   84 (321)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC
Confidence            3468999997 999999999999999999999987543110          0000000  00001111123466788899


Q ss_pred             CEEEEccc
Q 029008          123 TAVISCVG  130 (200)
Q Consensus       123 d~vi~~ag  130 (200)
                      |.|+-++.
T Consensus        85 DlViEavp   92 (321)
T PRK07066         85 DFIQESAP   92 (321)
T ss_pred             CEEEECCc
Confidence            99999753

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.65  E-value=0.0085  Score=47.71  Aligned_cols=67  Identities=21%  Similarity=0.140  Sum_probs=43.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC---CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ||++|.|+|+ |.+|..++..|.+.|   ++|.+.+|+.+........-++.+     .  .+..++++.+|+||-+.
T Consensus         1 ~mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~-----~--~~~~~~~~~advVil~v   70 (267)
T PRK11880          1 MMKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRA-----A--TDNQEAAQEADVVVLAV   70 (267)
T ss_pred             CCCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCee-----c--CChHHHHhcCCEEEEEc
Confidence            4678999997 999999999999998   788888887543211110012211     1  12234456778888765

>PRK07574 formate dehydrogenase; Provisional

Probab=96.65  E-value=0.0057  Score=51.48  Aligned_cols=69  Identities=10%  Similarity=0.021  Sum_probs=50.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++|.|+|. |.||+.+++.|...|.+|++.+|........ ...++.       -..+++++++.+|+|+.+...
T Consensus       190 L~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-~~~g~~-------~~~~l~ell~~aDvV~l~lPl  258 (385)
T PRK07574        190 LEGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-QELGLT-------YHVSFDSLVSVCDVVTIHCPL  258 (385)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCCCchhhH-hhcCce-------ecCCHHHHhhcCCEEEEcCCC
Confidence            56789999997 9999999999999999999998875321110 001111       123477889999999888764

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.65  E-value=0.011  Score=48.15  Aligned_cols=66  Identities=15%  Similarity=0.068  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|.|- |.||+.+++.|...|.+|++.+|.....       ++...      ..+++++++++|+|+.+....
T Consensus       119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~------~~~l~ell~~aDiv~~~lp~t  184 (303)
T PRK06436        119 LLYNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRSYVND-------GISSI------YMEPEDIMKKSDFVLISLPLT  184 (303)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCccc-------Ccccc------cCCHHHHHhhCCEEEECCCCC
Confidence            357899999996 9999999999888899999998863221       11100      124678888999999887643

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.64  E-value=0.0029  Score=53.38  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=55.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++|+|+ |-+|.-++++|.+.| .+|+++.|..++..+....-+     +++...+.+...+..+|+||.+.|..
T Consensus       176 L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTsa~  249 (414)
T COG0373         176 LKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISSTSAP  249 (414)
T ss_pred             cccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecCCC
Confidence            47889999998 999999999999999 588888887665332111112     44555677888899999999987653

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.64  E-value=0.01  Score=48.83  Aligned_cols=69  Identities=13%  Similarity=0.124  Sum_probs=50.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+|++.|+|. |-||+.+++.|..-|.+|++.++...+....    ..     ...-.+++++++...|+|+...-..
T Consensus       140 l~gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~~~~~~~~~----~~-----~~~~~~~Ld~lL~~sDiv~lh~PlT  208 (324)
T COG0111         140 LAGKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDPYSPRERAG----VD-----GVVGVDSLDELLAEADILTLHLPLT  208 (324)
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHhCCCeEEEECCCCchhhhc----cc-----cceecccHHHHHhhCCEEEEcCCCC
Confidence            46899999997 9999999999999999999999844332110    00     0112345788888889888776543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.62  E-value=0.0062  Score=51.66  Aligned_cols=68  Identities=16%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++|+|+|+ |.+|..+++.+...|.+|+++++++.+.... ...++..+     +   +++++.++|+||.+.|.
T Consensus       200 l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-~~~G~~~~-----~---~~e~v~~aDVVI~atG~  267 (413)
T cd00401         200 IAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQA-AMEGYEVM-----T---MEEAVKEGDIFVTTTGN  267 (413)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHH-HhcCCEEc-----c---HHHHHcCCCEEEECCCC
Confidence            46889999998 9999999999999999999988876553221 11233322     1   23456788999988764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.61  E-value=0.039  Score=45.15  Aligned_cols=96  Identities=14%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc----c---------------------ccCC-CCeeEEEccCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL----R---------------------DSWA-NNVIWHQGNLL  110 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----~---------------------~~~~-~~~~~~~~Dl~  110 (200)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.-+..    +                     ...+ -+++.+..++.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            5899997 9999999999999996 7777776531100    0                     0111 24666777776


Q ss_pred             CHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       111 d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +.....+.++++|+||.+...           ...-..+-+.|...++ .+|...+
T Consensus        80 ~~~~~~~f~~~~DvVv~a~Dn-----------~~ar~~in~~c~~~~i-p~I~~gt  123 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALDN-----------LAARRHVNKMCLAADV-PLIESGT  123 (312)
T ss_pred             CccchHHHHhcCCEEEECCCC-----------HHHHHHHHHHHHHCCC-CEEEEec
Confidence            654345678889999987532           1222344566666664 4555554

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.60  E-value=0.011  Score=51.09  Aligned_cols=75  Identities=21%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      +..+++|+|.|. |..|.++++.|.+.|++|.+.+++.....+.....+++++.++- +++    .++++|.||...|..
T Consensus        12 ~~~~~~v~v~G~-G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~-~~~----~~~~~d~vV~Spgi~   85 (473)
T PRK00141         12 QELSGRVLVAGA-GVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAE-ASD----QLDSFSLVVTSPGWR   85 (473)
T ss_pred             cccCCeEEEEcc-CHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCC-chh----HhcCCCEEEeCCCCC
Confidence            346778999996 99999999999999999999997644321111123556654421 122    345789999998864


Q ss_pred             C
Q 029008          133 G  133 (200)
Q Consensus       133 ~  133 (200)
                      .
T Consensus        86 ~   86 (473)
T PRK00141         86 P   86 (473)
T ss_pred             C
Confidence            3

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.60  E-value=0.052  Score=43.47  Aligned_cols=99  Identities=15%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcc----c--------------------ccCCC--CeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL----R--------------------DSWAN--NVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~----~--------------------~~~~~--~~~~~~  106 (200)
                      ....+|+|.|+ |++|.++++.|+..| -++++++.+.-...    +                    .....  +++.+.
T Consensus        28 L~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~  106 (268)
T PRK15116         28 FADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD  106 (268)
T ss_pred             hcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence            35679999997 999999999999999 47888876531100    0                    00012  233442


Q ss_pred             ccCCCHHHHHHHhc-CCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALD-GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~-~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                       +..+++.+.+++. ++|+||.+....           ..-..+.+.|.+.++ .+|.+..
T Consensus       107 -~~i~~e~~~~ll~~~~D~VIdaiD~~-----------~~k~~L~~~c~~~~i-p~I~~gG  154 (268)
T PRK15116        107 -DFITPDNVAEYMSAGFSYVIDAIDSV-----------RPKAALIAYCRRNKI-PLVTTGG  154 (268)
T ss_pred             -cccChhhHHHHhcCCCCEEEEcCCCH-----------HHHHHHHHHHHHcCC-CEEEECC
Confidence             2334566666664 689998876532           222456778888765 4554443

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.023  Score=44.98  Aligned_cols=93  Identities=18%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-CcEEE-eecCCCCcccccC--CCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-LTVAS-LSRSGRSSLRDSW--ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~-~~r~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +++|.|.|++|.+|+.+++.+.+.. .++.+ ++|..+.......  ......+..-+.|  ++.....++|++|-...+
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~--~~~~~~~~~DV~IDFT~P   79 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTD--DLLLVKADADVLIDFTTP   79 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeec--chhhcccCCCEEEECCCc
Confidence            5789999999999999999999876 45443 4454332110000  0001111111111  133445567888875443


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEE
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFV  162 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v  162 (200)
                                  .++...++.|.++++..+|
T Consensus        80 ------------~~~~~~l~~~~~~~~~lVI   98 (266)
T COG0289          80 ------------EATLENLEFALEHGKPLVI   98 (266)
T ss_pred             ------------hhhHHHHHHHHHcCCCeEE
Confidence                        2345566777776654444

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.59  E-value=0.0098  Score=48.77  Aligned_cols=65  Identities=22%  Similarity=0.211  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|.|- |.||+.+++.+...|.+|++.++.....        .     +. ...++++++.++|+|+.+....
T Consensus       144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~~V~~~~~~~~~~--------~-----~~-~~~~l~ell~~sDiv~l~~Plt  208 (314)
T PRK06932        144 DVRGSTLGVFGK-GCLGTEVGRLAQALGMKVLYAEHKGASV--------C-----RE-GYTPFEEVLKQADIVTLHCPLT  208 (314)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCcccc--------c-----cc-ccCCHHHHHHhCCEEEEcCCCC
Confidence            357899999996 9999999999999999999876542110        0     00 1235788999999998877643

>PRK14851 hypothetical protein; Provisional

Probab=96.59  E-value=0.024  Score=51.22  Aligned_cols=101  Identities=17%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCC------cc-------------------cccC-CCCeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS------SL-------------------RDSW-ANNVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~------~~-------------------~~~~-~~~~~~~~  106 (200)
                      ....+|+|.|+ |++|..+++.|...|. ++++++.+.-.      ..                   .... ..+++.+.
T Consensus        41 L~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~  119 (679)
T PRK14851         41 LAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP  119 (679)
T ss_pred             HhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            35679999997 9999999999999996 66666644210      00                   0001 12567777


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ..++ ++++.++++++|+||.+.-.+.         +..-..+.+.|.+.++ .+|+.+.
T Consensus       120 ~~i~-~~n~~~~l~~~DvVid~~D~~~---------~~~r~~l~~~c~~~~i-P~i~~g~  168 (679)
T PRK14851        120 AGIN-ADNMDAFLDGVDVVLDGLDFFQ---------FEIRRTLFNMAREKGI-PVITAGP  168 (679)
T ss_pred             cCCC-hHHHHHHHhCCCEEEECCCCCc---------HHHHHHHHHHHHHCCC-CEEEeec
Confidence            7774 5678889999999997653211         1111245667777766 3555543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.59  E-value=0.0014  Score=49.50  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      |+|.|+|. |++|..++..|++.|++|++++.+++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCCEEEEEeCChH
Confidence            68999986 99999999999999999999998764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.59  E-value=0.047  Score=46.19  Aligned_cols=98  Identities=19%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--c--c---------------------ccCC-CCeeEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L--R---------------------DSWA-NNVIWHQG  107 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~--~---------------------~~~~-~~~~~~~~  107 (200)
                      ...+|+|+|+ |++|..+++.|...|. ++++++.+.-..  .  +                     ...+ -+++.+..
T Consensus        41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            4669999998 9999999999999997 677776542110  0  0                     0011 13455555


Q ss_pred             cCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       108 Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +++ .+...++++++|+||.+...           ...-..+-++|.+.++ .+|+.+.
T Consensus       120 ~i~-~~~~~~~~~~~D~Vvd~~d~-----------~~~r~~ln~~~~~~~~-p~v~~~~  165 (392)
T PRK07878        120 RLD-PSNAVELFSQYDLILDGTDN-----------FATRYLVNDAAVLAGK-PYVWGSI  165 (392)
T ss_pred             cCC-hhHHHHHHhcCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEEe
Confidence            554 44567788899999987532           1222345567777765 4666655

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.58  E-value=0.028  Score=47.19  Aligned_cols=99  Identities=19%  Similarity=0.273  Sum_probs=64.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCC--cc--c---------------------ccCC-CCeeEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SL--R---------------------DSWA-NNVIWHQ  106 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~--~~--~---------------------~~~~-~~~~~~~  106 (200)
                      ....+|+|+|+ |++|..+++.|+..|. ++++++.+.-.  ..  +                     ...+ -+++.+.
T Consensus        39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~  117 (370)
T PRK05600         39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR  117 (370)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence            45679999998 9999999999999996 78888765211  00  0                     0111 2455665


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ..++ ++.+.++++++|+||.|....           ..-..+-++|.+.++ .+|+.+.
T Consensus       118 ~~i~-~~~~~~~~~~~DlVid~~Dn~-----------~~r~~in~~~~~~~i-P~v~~~~  164 (370)
T PRK05600        118 ERLT-AENAVELLNGVDLVLDGSDSF-----------ATKFLVADAAEITGT-PLVWGTV  164 (370)
T ss_pred             eecC-HHHHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEE
Confidence            5554 556778899999999985431           222344566777765 4555554

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.57  E-value=0.034  Score=45.31  Aligned_cols=98  Identities=13%  Similarity=0.160  Sum_probs=65.6

Q ss_pred             EEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------c---cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           61 VLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D---SWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        61 VtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~---~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      |+|+ |.+|..++..|+..+.  ++.+++.+.+....      .   .....+++...|       .+.++++|+||.+|
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-------~~~~~daDivVita   72 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD-------YSDCKDADLVVITA   72 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC-------HHHHCCCCEEEECC
Confidence            4676 9999999999998874  78888887653211      0   011233333222       35788999999999


Q ss_pred             ccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          130 GGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       130 g~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      |....+    ...+..|..-...+.+.+.+++.+ .++.+|.
T Consensus        73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  114 (299)
T TIGR01771        73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN  114 (299)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            974322    356778888888888888877655 4554543

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.57  E-value=0.018  Score=47.18  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL   81 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~   81 (200)
                      +++|.|.||||.+|+.+++.|.++..
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f   26 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHF   26 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCC
Confidence            46899999999999999999999753

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.55  E-value=0.01  Score=48.25  Aligned_cols=100  Identities=12%  Similarity=0.138  Sum_probs=62.9

Q ss_pred             EEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc------cc---CCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           59 LLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------DS---WANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      |.|+|+ |.+|..++..|+..|. +|++++++++....      ..   ......+...  .|   + +.++++|+||.+
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t--~d---~-~~l~dADiVIit   73 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGT--ND---Y-EDIAGSDVVVIT   73 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEc--CC---H-HHhCCCCEEEEe
Confidence            468998 9999999999998876 99999988653210      00   0011122110  12   3 347899999999


Q ss_pred             cccCCCCc----ccchhhHHHHHHHHHHHHHcCCCEE-EEEe
Q 029008          129 VGGFGSNS----YMYKINGTANINAIRAASEKGVKRF-VYIS  165 (200)
Q Consensus       129 ag~~~~~~----~~~~~n~~~~~~~~~~a~~~~~~~~-v~vS  165 (200)
                      +|....+.    ..+..|..-...+++.+.+...+.+ |.+|
T Consensus        74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s  115 (300)
T cd01339          74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT  115 (300)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            98644322    2334566666677777777665544 4554

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.54  E-value=0.0071  Score=38.96  Aligned_cols=34  Identities=32%  Similarity=0.670  Sum_probs=30.7

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      +++|.|| |++|..++..|.+.|.+|+++.|.+.-
T Consensus         1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5789997 999999999999999999999998654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.54  E-value=0.0027  Score=51.88  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      |++|.|.|+ |.+|..++..|++.|++|.+.+|+++
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~~~   35 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGHDVTLWARDPE   35 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            468999997 99999999999999999999998753

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=96.54  E-value=0.025  Score=50.25  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=55.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ..+|+|+|.|+ |.+|+.+++.+.+.|++|++++.+++.+....  . -..+.+|..|.+.+.++.+.+|++...
T Consensus        20 ~~~k~IgIIGg-Gqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~--A-D~~~v~~~~D~~~l~~~a~~~dvIt~e   90 (577)
T PLN02948         20 VSETVVGVLGG-GQLGRMLCQAASQMGIKVKVLDPLEDCPASSV--A-ARHVVGSFDDRAAVREFAKRCDVLTVE   90 (577)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchhhh--C-ceeeeCCCCCHHHHHHHHHHCCEEEEe
Confidence            56789999998 89999999999999999999988754322111  1 134557889999998888889988553

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.54  E-value=0.015  Score=47.60  Aligned_cols=65  Identities=20%  Similarity=0.196  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...++++.|.|- |.||+.+++.+..-|.+|.+.+|.....     ...+        ...+++++++.+|+|+.+...
T Consensus       142 ~L~gktvGIiG~-G~IG~~vA~~~~~fgm~V~~~d~~~~~~-----~~~~--------~~~~l~ell~~sDvv~lh~Pl  206 (311)
T PRK08410        142 EIKGKKWGIIGL-GTIGKRVAKIAQAFGAKVVYYSTSGKNK-----NEEY--------ERVSLEELLKTSDIISIHAPL  206 (311)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhhcCCEEEEECCCcccc-----ccCc--------eeecHHHHhhcCCEEEEeCCC
Confidence            357899999996 9999999999999999999988753221     0111        123578889999988877654

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.53  E-value=0.08  Score=40.43  Aligned_cols=99  Identities=18%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--c----------c---------------ccCC-CCeeEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L----------R---------------DSWA-NNVIWH  105 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~----------~---------------~~~~-~~~~~~  105 (200)
                      ...+|+|.|+ |++|..+++.|...|. ++++++.+.-..  .          .               ...+ -+++.+
T Consensus        18 ~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~   96 (198)
T cd01485          18 RSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV   96 (198)
T ss_pred             hhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence            4579999998 6699999999999996 688877652110  0          0               0011 134555


Q ss_pred             EccCCC-HHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          106 QGNLLS-SDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       106 ~~Dl~d-~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ..++.+ .+...+.++++|+||.+...           ......+-+.|++.++ .+|+.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~dvVi~~~d~-----------~~~~~~ln~~c~~~~i-p~i~~~~  146 (198)
T cd01485          97 EEDSLSNDSNIEEYLQKFTLVIATEEN-----------YERTAKVNDVCRKHHI-PFISCAT  146 (198)
T ss_pred             ecccccchhhHHHHHhCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEEe
Confidence            555542 45566778889999876332           1222345677887776 5666665

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.53  E-value=0.023  Score=48.88  Aligned_cols=74  Identities=22%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      +|+|.|. |..|...++.|.++|++|.+.+++......    .....+++++.+.-.+.+.++..+.+.|.||...|..
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~   79 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIP   79 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCC
Confidence            6899997 899999999999999999999987543221    1223366666554344555556777899999988764

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=96.51  E-value=0.01  Score=49.26  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      +|+|.|+ |.+|..+++.+.+.|++|++++.++....... .  -..+..|..|++.+.++.+.+|+|..
T Consensus         1 ~igiiG~-gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~-a--d~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGG-GQLGRMLALAARPLGIKVHVLDPDANSPAVQV-A--DHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCEEEEECCCCCCChhHh-C--ceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            4789998 89999999999999999999988754432211 1  12446788999999999999998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK06849 hypothetical protein; Provisional

Probab=96.49  E-value=0.0083  Score=50.54  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=34.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      .+|+|||||+...+|..+++.|.+.|++|++++..+..
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~   40 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP   40 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            46899999999999999999999999999999887543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.49  E-value=0.0055  Score=49.63  Aligned_cols=76  Identities=14%  Similarity=0.197  Sum_probs=48.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCC--ccccc---CCC--CeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLRDS---WAN--NVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~--~~~~~---~~~--~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      ..+++++|.|+ |+.+++++-.|...|. +|+++.|+.+.  ..+..   ...  ...+...++.+.+.+.+.+.+.|+|
T Consensus       122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv  200 (288)
T PRK12749        122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL  200 (288)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence            45689999997 7889999999999996 89999998531  11110   011  1111112232333355566789999


Q ss_pred             EEccc
Q 029008          126 ISCVG  130 (200)
Q Consensus       126 i~~ag  130 (200)
                      ||+..
T Consensus       201 INaTp  205 (288)
T PRK12749        201 TNGTK  205 (288)
T ss_pred             EECCC
Confidence            99864

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.45  E-value=0.042  Score=45.86  Aligned_cols=92  Identities=17%  Similarity=0.255  Sum_probs=52.2

Q ss_pred             CeEEEEccCchhHHHHHHHHH-HCCCc---EEEeecCCC-CcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREAL-DRGLT---VASLSRSGR-SSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~-~~g~~---V~~~~r~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++|.|.||||.+|+.+.+.|. ++...   ++.+..... ............+.  ++.+.    ..+.++|++|.++|.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~--~~~~~----~~~~~vDivffa~g~   74 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ--DAFDI----DALKALDIIITCQGG   74 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEE--cCccc----ccccCCCEEEEcCCH
Confidence            478999999999999999999 55543   344433222 11111111122222  33222    245789999999875


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      .            -+..+...+.++|.. .+|=-||
T Consensus        75 ~------------~s~~~~p~~~~aG~~~~VIDnSS   98 (366)
T TIGR01745        75 D------------YTNEIYPKLRESGWQGYWIDAAS   98 (366)
T ss_pred             H------------HHHHHHHHHHhCCCCeEEEECCh
Confidence            2            123456666777743 3444444

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.45  E-value=0.064  Score=42.10  Aligned_cols=96  Identities=13%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--c--c---------------------ccCC-CCeeEEEccCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L--R---------------------DSWA-NNVIWHQGNLL  110 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~--~---------------------~~~~-~~~~~~~~Dl~  110 (200)
                      +|+|.|+ |++|..+++.|...|. ++++++.+.-+.  .  +                     ...+ -+++.+..++.
T Consensus         1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            5899997 9999999999999996 777777653110  0  0                     0111 24566666775


Q ss_pred             CHHHH-HHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          111 SSDSW-KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       111 d~~~~-~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +...+ ...++++|+||.+...           +..-..+-+.|.+.++ .+|..++
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~Dn-----------~~aR~~ln~~c~~~~i-plI~~g~  124 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALDN-----------IIARRYVNGMLIFLIV-PLIESGT  124 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEcc
Confidence            44333 3567889999887432           2222345566666654 4665555

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PLN02494 adenosylhomocysteinase

Probab=96.44  E-value=0.009  Score=51.33  Aligned_cols=68  Identities=12%  Similarity=0.118  Sum_probs=48.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|+|. |.||+.+++.+...|.+|+++.+++.+..+. ...++.++        .++++++..|++|.+.|.
T Consensus       252 LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-~~~G~~vv--------~leEal~~ADVVI~tTGt  319 (477)
T PLN02494        252 IAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQA-LMEGYQVL--------TLEDVVSEADIFVTTTGN  319 (477)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-HhcCCeec--------cHHHHHhhCCEEEECCCC
Confidence            46899999997 8999999999999999999988876542211 11223322        134566778888887763

>PRK14852 hypothetical protein; Provisional

Probab=96.42  E-value=0.032  Score=51.97  Aligned_cols=101  Identities=12%  Similarity=0.084  Sum_probs=64.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCC------cc-------------------cccCC-CCeeEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS------SL-------------------RDSWA-NNVIWHQG  107 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~------~~-------------------~~~~~-~~~~~~~~  107 (200)
                      ...+|+|.|+ |++|..+++.|...|. ++++++.+.-.      ..                   ...++ -+++.+..
T Consensus       331 ~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~  409 (989)
T PRK14852        331 LRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE  409 (989)
T ss_pred             hcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence            4569999997 9999999999999996 66666554211      00                   00111 24566655


Q ss_pred             cCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       108 Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      .+ +++.+.++++++|+||.+.-.+.         ...-..+.+.|.+.++ .+|+.++.
T Consensus       410 ~I-~~en~~~fl~~~DiVVDa~D~~~---------~~~rr~l~~~c~~~~I-P~I~ag~~  458 (989)
T PRK14852        410 GV-AAETIDAFLKDVDLLVDGIDFFA---------LDIRRRLFNRALELGI-PVITAGPL  458 (989)
T ss_pred             CC-CHHHHHHHhhCCCEEEECCCCcc---------HHHHHHHHHHHHHcCC-CEEEeecc
Confidence            55 56778889999999998753321         0111345666777765 46666653

>PLN00203 glutamyl-tRNA reductase

Probab=96.42  E-value=0.0046  Score=54.00  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccC-CCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++|+|+|+ |.+|..+++.|...|. +|++..|+.++...... ..++.+.   +...+++...+.++|+||.+.+.
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~---~~~~~dl~~al~~aDVVIsAT~s  339 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEII---YKPLDEMLACAAEADVVFTSTSS  339 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceE---eecHhhHHHHHhcCCEEEEccCC
Confidence            45789999998 9999999999999996 79999888655322110 0122211   12234556778899999998764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.39  E-value=0.016  Score=48.47  Aligned_cols=100  Identities=16%  Similarity=0.127  Sum_probs=63.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--------------cc-----CCCCeeEEEccCCCHHHHHH
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--------------DS-----WANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------------~~-----~~~~~~~~~~Dl~d~~~~~~  117 (200)
                      |+|.|+|. ||+|....--|++.||+|++++.++.+-..              ..     ...+..+       ..++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f-------Ttd~~~   72 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF-------TTDYEE   72 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE-------EcCHHH
Confidence            58899995 999999999999999999999987643110              00     0011222       123577


Q ss_pred             HhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       118 ~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      +++..|++|-+.|....++..+  +......+++...+.-.+ ++|.+=|
T Consensus        73 a~~~adv~fIavgTP~~~dg~a--Dl~~V~ava~~i~~~~~~~~vvV~KS  120 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSA--DLSYVEAVAKDIGEILDGKAVVVIKS  120 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCc--cHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence            8888999999998654443333  333344445554444322 5665555

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.38  E-value=0.0098  Score=50.35  Aligned_cols=67  Identities=19%  Similarity=0.192  Sum_probs=48.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++++|.|. |.+|..+++.+...|.+|+++++++.+..+.. ..++.+.     +   +++++++.|++|.+.|
T Consensus       193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-~~G~~v~-----~---leeal~~aDVVItaTG  259 (406)
T TIGR00936       193 IAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAA-MDGFRVM-----T---MEEAAKIGDIFITATG  259 (406)
T ss_pred             CCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-hcCCEeC-----C---HHHHHhcCCEEEECCC
Confidence            56889999997 99999999999999999999988765432211 1233222     1   2345667888888776

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.38  E-value=0.012  Score=47.40  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      +..+|+|.|+|.+|.+|..++..|+++|+.|++....  .                    .++++..+++|+||-+.|..
T Consensus       155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--t--------------------~~l~~~~~~ADIVI~avg~~  212 (284)
T PRK14179        155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--T--------------------RNLAEVARKADILVVAIGRG  212 (284)
T ss_pred             CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--C--------------------CCHHHHHhhCCEEEEecCcc
Confidence            3578999999999999999999999999999886211  0                    02456677788888887753

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.38  E-value=0.0097  Score=49.14  Aligned_cols=65  Identities=18%  Similarity=0.216  Sum_probs=48.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++|.|+|. |.+|+.+++.|...|++|++.+|+......     ...       -.++++++++++|+|+.+...
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~-----~~~-------~~~~l~ell~~aDiVil~lP~  208 (330)
T PRK12480        144 VKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLD-----FLT-------YKDSVKEAIKDADIISLHVPA  208 (330)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhh-----hhh-------ccCCHHHHHhcCCEEEEeCCC
Confidence            56789999997 999999999999999999999887543110     000       123467888899988887653

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.37  E-value=0.0091  Score=49.37  Aligned_cols=67  Identities=18%  Similarity=0.174  Sum_probs=49.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++|.|+|. |.||+.+++.|...|.+|.+.+|........  ..++        ...+++++++++|+|+.+...
T Consensus       148 L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~--~~~~--------~~~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        148 VYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKPEAEK--ELGA--------EYRPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCChhhHH--HcCC--------EecCHHHHHhhCCEEEEeCCC
Confidence            57899999997 9999999999999999999988864332110  0011        122467788899999988754

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.36  E-value=0.021  Score=47.55  Aligned_cols=75  Identities=20%  Similarity=0.129  Sum_probs=49.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+|+|.|+ |.+|..+++.+...|.+|++++.+.++.......-++..+ .|..+.+.+.+...++|++|.+.|.
T Consensus       183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~~~~~~D~vid~~g~  257 (360)
T PLN02586        183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSF-LVSTDPEKMKAAIGTMDYIIDTVSA  257 (360)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEE-EcCCCHHHHHhhcCCCCEEEECCCC
Confidence            4678999775 9999999999999999988877665442211111122221 1334445566655678999998873

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.36  E-value=0.015  Score=40.51  Aligned_cols=85  Identities=19%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             CeEEEEccC---chhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           57 EKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        57 ~~ilVtGa~---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      |+|.|+|++   +..|..+.+.|.+.|++|+.+.-+...-      .+..++       .++.+.-..+|.++.+...  
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------~G~~~y-------~sl~e~p~~iDlavv~~~~--   65 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI------LGIKCY-------PSLAEIPEPIDLAVVCVPP--   65 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE------TTEE-B-------SSGGGCSST-SEEEE-S-H--
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE------CcEEee-------ccccCCCCCCCEEEEEcCH--
Confidence            579999987   7789999999999999999875443210      122221       1122212467888776543  


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                                ..+..+++.|.+.|++.+++.++
T Consensus        66 ----------~~~~~~v~~~~~~g~~~v~~~~g   88 (116)
T PF13380_consen   66 ----------DKVPEIVDEAAALGVKAVWLQPG   88 (116)
T ss_dssp             ----------HHHHHHHHHHHHHT-SEEEE-TT
T ss_pred             ----------HHHHHHHHHHHHcCCCEEEEEcc
Confidence                      23456678888888888888887

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.36  E-value=0.0092  Score=51.98  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=51.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH-------------H---H----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS-------------D---S----  114 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~-------------~---~----  114 (200)
                      .+.+|+|+|+ |-+|...+..+...|.+|+++++++++..... .-+.+++..|..+.             +   .    
T Consensus       164 pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae-slGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        164 PPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE-SMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            3679999998 99999999999999999999998876532211 12444443333221             1   1    


Q ss_pred             HHHHhcCCCEEEEccccC
Q 029008          115 WKEALDGVTAVISCVGGF  132 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~  132 (200)
                      +.+..+++|++|.+++..
T Consensus       242 ~~~~~~gaDVVIetag~p  259 (509)
T PRK09424        242 FAEQAKEVDIIITTALIP  259 (509)
T ss_pred             HHhccCCCCEEEECCCCC
Confidence            112234699999999863

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.35  E-value=0.052  Score=41.43  Aligned_cols=97  Identities=14%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc-------------------------cccCC-CCeeEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL-------------------------RDSWA-NNVIWHQG  107 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-------------------------~~~~~-~~~~~~~~  107 (200)
                      ...+|+|.|+ |++|.++++.|...|. ++++++.+.-...                         ....+ -+++++..
T Consensus        20 ~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~   98 (197)
T cd01492          20 RSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD   98 (197)
T ss_pred             HhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence            5679999997 6699999999999997 6777776531100                         01111 14455555


Q ss_pred             cCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       108 Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .+.  +...+.++++|+||.+...           ...-..+-+.|.+.++ .+|+.++
T Consensus        99 ~~~--~~~~~~~~~~dvVi~~~~~-----------~~~~~~ln~~c~~~~i-p~i~~~~  143 (197)
T cd01492          99 DIS--EKPEEFFSQFDVVVATELS-----------RAELVKINELCRKLGV-KFYATGV  143 (197)
T ss_pred             Ccc--ccHHHHHhCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEEe
Confidence            554  2245677889999986432           1222345577788776 4666665

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd08293 PTGR2 Prostaglandin reductase

Probab=96.35  E-value=0.0065  Score=49.89  Aligned_cols=74  Identities=20%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCH---HHHHHHh-cCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEAL-DGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~-~~~d~vi~~ag~  131 (200)
                      .+++|+||+|.+|..+++.+...|. +|++++++.++.......-+++.+ .|..+.   +.+.++. .++|++|.+.|.
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~v-i~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAA-INYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEE-EECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            7999999999999999999999998 799988765442111000112211 122222   2233332 368999998774

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.35  E-value=0.0059  Score=49.32  Aligned_cols=74  Identities=9%  Similarity=0.122  Sum_probs=47.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccc--cCCC--CeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD--SWAN--NVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--~~~~--~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ..+++++|.|+ |+.|++++-.|.+.|. +|+++.|+.++....  ....  ....+.  ..+...+...+..+|+|||+
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~--~~~~~~~~~~~~~~divINa  201 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDARGIEDVIAAADGVVNA  201 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE--ecCHhHHHHHHhhcCEEEEc
Confidence            34689999998 9999999999999997 688888876542211  0000  111111  11222334445679999998


Q ss_pred             cc
Q 029008          129 VG  130 (200)
Q Consensus       129 ag  130 (200)
                      ..
T Consensus       202 Tp  203 (283)
T PRK14027        202 TP  203 (283)
T ss_pred             CC
Confidence            64

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.35  E-value=0.059  Score=42.24  Aligned_cols=97  Identities=16%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc--c--c---------------------ccCC-CCeeEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L--R---------------------DSWA-NNVIWHQG  107 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--~--~---------------------~~~~-~~~~~~~~  107 (200)
                      ...+|+|.|. |++|.++++.|+..|. ++++++.+.-..  .  +                     ...+ -+++.+..
T Consensus        10 ~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          10 RNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             hCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            4679999997 9999999999999996 777777543110  0  0                     0011 13444444


Q ss_pred             cCCCHHHHHHHhc-CCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          108 NLLSSDSWKEALD-GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       108 Dl~d~~~~~~~~~-~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                      .++ ++.+..++. ++|+||.+....           ..-..+.+.|.+.++ .+|...
T Consensus        89 ~i~-~~~~~~l~~~~~D~VvdaiD~~-----------~~k~~L~~~c~~~~i-p~I~s~  134 (231)
T cd00755          89 FLT-PDNSEDLLGGDPDFVVDAIDSI-----------RAKVALIAYCRKRKI-PVISSM  134 (231)
T ss_pred             ecC-HhHHHHHhcCCCCEEEEcCCCH-----------HHHHHHHHHHHHhCC-CEEEEe
Confidence            443 455666664 689999875331           223456788888765 344433

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.34  E-value=0.018  Score=46.39  Aligned_cols=57  Identities=21%  Similarity=0.280  Sum_probs=46.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +..+++++|+|.+..+|+.++..|+++|+.|++..+..                      .++++..+++|+||..+|.
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T----------------------~~l~~~~~~ADIvi~avG~  212 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT----------------------KNLRHHVRNADLLVVAVGK  212 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC----------------------CCHHHHHhhCCEEEEcCCC
Confidence            35689999999999999999999999999998876531                      1256677788888888874

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.33  E-value=0.08  Score=41.98  Aligned_cols=73  Identities=23%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-cccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~  131 (200)
                      |+|+|.||| .=|+.|+..|.++|+ |.+.+-..-... .........+..+-+.|.+.+.+.++  +++.||...-+
T Consensus         1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHP   76 (249)
T PF02571_consen    1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHP   76 (249)
T ss_pred             CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCc
Confidence            689999997 678999999999998 655443322211 11122456788888889999999985  79999997654

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK07877 hypothetical protein; Provisional

Probab=96.32  E-value=0.031  Score=50.76  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=65.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCC--cc--c--------------------ccC-CCCeeEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRS--SL--R--------------------DSW-ANNVIWHQG  107 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~--~~--~--------------------~~~-~~~~~~~~~  107 (200)
                      ...+|+|.|+ | +|..++..|+..|.  ++++++.+.=.  +.  .                    ... .-+++.+..
T Consensus       106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~  183 (722)
T PRK07877        106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD  183 (722)
T ss_pred             hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence            4679999999 7 99999999999994  78888765311  00  0                    001 125667776


Q ss_pred             cCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       108 Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .++ ++++.++++++|+||.|.-.           +..-..+-++|.+.++ -+|+-++
T Consensus       184 ~i~-~~n~~~~l~~~DlVvD~~D~-----------~~~R~~ln~~a~~~~i-P~i~~~~  229 (722)
T PRK07877        184 GLT-EDNVDAFLDGLDVVVEECDS-----------LDVKVLLREAARARRI-PVLMATS  229 (722)
T ss_pred             cCC-HHHHHHHhcCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEcC
Confidence            665 77899999999999998532           1222345577777765 4665554

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.32  E-value=0.017  Score=46.51  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=45.4

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +..+++++|.|.++.+|+.++..|.++|..|++.....                      .++.+.++..|+||..+|.
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t----------------------~~l~~~~~~ADIVV~avG~  211 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT----------------------RDLAAHTRQADIVVAAVGK  211 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC----------------------CCHHHHhhhCCEEEEcCCC
Confidence            35789999999999999999999999999998754321                      1245677788888888774

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.30  E-value=0.012  Score=48.11  Aligned_cols=75  Identities=24%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH----HHh-cCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK----EAL-DGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~----~~~-~~~d~vi~~a  129 (200)
                      .+.+|+|+|++|.+|..+++.+...|.+|++++++.++... ...-++..+ .|..+.+.+.    ... .++|+++.+.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~-~~~lGa~~v-i~~~~~~~~~~~~~~~~~~gvdvv~d~~  215 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAY-LKKLGFDVA-FNYKTVKSLEETLKKASPDGYDCYFDNV  215 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHcCCCEE-EeccccccHHHHHHHhCCCCeEEEEECC
Confidence            46799999999999999999999999999988876544211 111122211 1222222222    222 2589999988


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       216 G~  217 (325)
T TIGR02825       216 GG  217 (325)
T ss_pred             CH
Confidence            74

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	1e-28
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	3e-28
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	5e-28
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	4e-27
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	9e-26
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	4e-21
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	7e-21
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	2e-20
1xq6_A	253	Unknown protein; structural genomics, protein stru	7e-20
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	5e-19
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	8e-19
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	5e-17
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	3e-16
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	3e-16
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	4e-16
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	1e-15
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	3e-14
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	6e-14
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	1e-13
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	2e-12
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	2e-12
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	2e-12
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	3e-12
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	4e-12
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	5e-12
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	1e-11
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	2e-11
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	3e-11
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	4e-11
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	9e-11
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	2e-10
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	3e-10
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	4e-10
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	8e-10
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	1e-09
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	2e-09
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	3e-09
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	4e-09
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	4e-09
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	3e-08
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	4e-08
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	5e-08
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	6e-08
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	2e-07
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	2e-07
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	3e-07
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	4e-07
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	7e-07
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	1e-06
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	2e-06
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	2e-06
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	2e-06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	5e-06
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	6e-06
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	8e-06
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	2e-05
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	1e-04
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	3e-04
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	4e-04
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	4e-04
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	4e-04
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	6e-04
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	7e-04

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score =  105 bits (264), Expect = 1e-28
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K++++G +GFVGS +  EAL+RG  V ++ R            ++   + ++ S D   E
Sbjct: 6   KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI--KIENEHLKVKKADVSSLDEVCE 63

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
              G  AVIS      +N  +Y       +  I    + GV RF+ +  A
Sbjct: 64  VCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score =  104 bits (261), Expect = 3e-28
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 6/130 (4%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ + G  G  G     +A+  G  V  L R   S L            G++L +    +
Sbjct: 5   KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS-SRLPSEGPRPAHVVVGDVLQAADVDK 63

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA----DFGVAN 173
            + G  AVI  +G     S    +      N + A    GV + V  ++A    D     
Sbjct: 64  TVAGQDAVIVLLGTRNDLSP-TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP 122

Query: 174 YLLQGYYEGK 183
             LQ   +  
Sbjct: 123 PRLQAVTDDH 132

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score =  103 bits (260), Expect = 5e-28
 Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNL-LSSDSWK 116
           K+ ++G  G VG  + +        + + +R      +    NNV     ++  + +   
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE---QVPQYNNVKAVHFDVDWTPEEMA 58

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           + L G+ A+I+  G  G +  + K++    +  ++AA +  VKRF+ +S  
Sbjct: 59  KQLHGMDAIINVSGSGGKS--LLKVDLYGAVKLMQAAEKAEVKRFILLSTI 107

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score =  104 bits (261), Expect = 4e-27
 Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 9/119 (7%)

Query: 53  PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS 112
           P    K  VLG  G +G H  R     G  +  + R   S ++             +L  
Sbjct: 10  PGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS-SQIQRLAYLEPECRVAEMLDH 68

Query: 113 DSWKEALDGVTAVISCVGGFGSNS----YMYKIN--GTANINAIRAASEKGVKRFVYIS 165
              + AL G+  VI   G + S               T       A  +  V R +Y+ 
Sbjct: 69  AGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPF--YAACLQARVPRILYVG 125

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 98.6 bits (246), Expect = 9e-26
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR--SSLRDSWANNVIWHQGNLLSSDSW 115
           ++LV+G NG V  ++  E  ++G    ++ R+      LR+  A++++    NL   + +
Sbjct: 23  RVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIV--VANL--EEDF 78

Query: 116 KEALDGVTAVISCVGGFGS--NSYMYKINGTANINAIRAASEKGVKRFVYIS---AADFG 170
             A   + AV+   G            I+    I  I+ A ++G+KRF+ +S     D  
Sbjct: 79  SHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPD 138

Query: 171 VANYLLQGYYEGK 183
                ++ Y   K
Sbjct: 139 QGPMNMRHYLVAK 151

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 86.2 bits (213), Expect = 4e-21
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ VLG  G  GS I  EA  RG  V ++ R  +   + +                  + 
Sbjct: 2   KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ---KAADRLGATVATLVKEPLVLTEA 58

Query: 118 ALDGVTAVISCVG-GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            LD V AV+  +   +GS      ++   ++  +             + +A
Sbjct: 59  DLDSVDAVVDALSVPWGSGRGYLHLDFATHL--VSLLRNSDTLAVFILGSA 107

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 85.4 bits (211), Expect = 7e-21
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ ++G  G  GS I  EA +RG  V ++ R+    +  +   ++   Q ++   D    
Sbjct: 2   KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA-GKITQTHK-DINILQKDIF--DLTLS 57

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            L     V+   G         + + T+  + I   +     R + +  A
Sbjct: 58  DLSDQNVVVDAYGISPDE---AEKHVTSLDHLISVLNGTVSPRLLVVGGA 104

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 84.5 bits (209), Expect = 2e-20
 Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
            +L+LG  G +  H+  +  D+  +     +R   + +   +  N     G++L+  + K
Sbjct: 25  NVLILGAGGQIARHVINQLADKQTIKQTLFARQ-PAKIHKPYPTNSQIIMGDVLNHAALK 83

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLL 176
           +A+ G   V + + G   +            + I A     VKR +++ +   G+ + + 
Sbjct: 84  QAMQGQDIVYANLTGEDLD--------IQANSVIAAMKACDVKRLIFVLSL--GIYDEVP 133

Query: 177 QGYYEGKDSNLSPLLA 192
             + E  ++ +   L 
Sbjct: 134 GKFVEWNNAVIGEPLK 149

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 83.4 bits (206), Expect = 7e-20
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 28/153 (18%)

Query: 57  EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
             +LV G +G  G  + ++  +         L RS +   ++          G++  +DS
Sbjct: 5   PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG--KEKIGGEADVFIGDITDADS 62

Query: 115 WKEALDGVTAVISCVGGFGSNS-------------------YMYKINGTANINAIRAASE 155
              A  G+ A++                             Y  +++     N I AA  
Sbjct: 63  INPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV 122

Query: 156 KGVKRFVYISA-----ADFGVANYLLQGYYEGK 183
            GVK  V + +      D  +           K
Sbjct: 123 AGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWK 155

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313

 Score = 81.9 bits (202), Expect = 5e-19
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN-------NVIWHQGNLL 110
           ++L++GG G++G  I   ++  G     L R    S  D                + +L 
Sbjct: 6   RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 65

Query: 111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG 170
                 +AL  V  VIS + G          +    +  + A  E G  +    S  +FG
Sbjct: 66  DHQRLVDALKQVDVVISALAGGVL-----SHHILEQLKLVEAIKEAGNIKRFLPS--EFG 118

Query: 171 V 171
           +
Sbjct: 119 M 119

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 80.2 bits (198), Expect = 8e-19
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
            + +LG +G  G  + +E L++GL   V  + R  + +  +    NV     +    D +
Sbjct: 20  SVFILGASGETGRVLLKEILEQGLFSKVTLIGRR-KLTFDEEAYKNVNQEVVDFEKLDDY 78

Query: 116 KEALDGVTAVISCVGGF----GSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV 171
             A  G      C+G      G+  +  +++    + +   A   G K F  +S+     
Sbjct: 79  ASAFQGHDVGFCCLGTTRGKAGAEGF-VRVDRDYVLKSAELAKAGGCKHFNLLSSK---G 134

Query: 172 ANYLLQGYY 180
           A+      Y
Sbjct: 135 ADKSSNFLY 143

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308

 Score = 76.5 bits (188), Expect = 5e-17
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 19/122 (15%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--------LRDSWANNVIWHQGNL 109
           ++L++G  G++G H+ + +LD G     L R   +S        L    A+      G++
Sbjct: 6   RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65

Query: 110 LSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADF 169
               S  EA+  V  VIS VG              + +N I+A  E G  +  + S  +F
Sbjct: 66  DDHASLVEAVKNVDVVISTVGSLQI---------ESQVNIIKAIKEVGTVKRFFPS--EF 114

Query: 170 GV 171
           G 
Sbjct: 115 GN 116

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318

 Score = 74.2 bits (182), Expect = 3e-16
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 16/118 (13%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSR--SGRSSLRDSW-ANNVIWHQGNLLSSDS 114
           K+L+ GG G++G+H+ + +L  G      +R  S +++L D + +   I  +G L   + 
Sbjct: 13  KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEK 72

Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGV 171
             E +  V  VIS +                    + A    G +KRF+    +DFGV
Sbjct: 73  LVELMKKVDVVISALAFPQI---------LDQFKILEAIKVAGNIKRFLP---SDFGV 118

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307

 Score = 74.2 bits (182), Expect = 3e-16
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW---------ANNVIWHQGN 108
           K+L+LG  G +G HI   ++  G    +L R   ++              +  VI  +G+
Sbjct: 4   KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63

Query: 109 LLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           +   ++  +A+  V  VI   G                +  I+A  E G  +  + S  +
Sbjct: 64  INDHETLVKAIKQVDIVICAAGRLL---------IEDQVKIIKAIKEAGNVKKFFPS--E 112

Query: 169 FGV 171
           FG+
Sbjct: 113 FGL 115

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 72.7 bits (178), Expect = 4e-16
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 13/113 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDR-GLTVASLSR--SGRSSLRDSWANNVIWHQGNLLSSDS 114
            + +LG  G +   +    L    + +    R    R          V   +G+  +   
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66

Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            ++A+     V       GS          A+I  ++A S   ++R + +S A
Sbjct: 67  LEQAVTNAEVVFVGAMESGS--------DMASI--VKALSRXNIRRVIGVSMA 109

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 19/123 (15%)

Query: 57  EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW--------ANNVIWHQGN 108
           EK+++ GG G++G  + R +L         +R        S         +  V   +G 
Sbjct: 5   EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64

Query: 109 LLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           +   +     L  V  VIS +              ++ I+ I A    G  +    S  D
Sbjct: 65  MEEHEKMVSVLKQVDIVISALPFPMI---------SSQIHIINAIKAAGNIKRFLPS--D 113

Query: 169 FGV 171
           FG 
Sbjct: 114 FGC 116

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score = 69.3 bits (169), Expect = 3e-14
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 48  TVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANN 101
           TV+  P P  ++L+ G  GF+G  +   +LD       L+R G  S       +      
Sbjct: 2   TVSPVPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKG 61

Query: 102 VIWHQGNLLSSDSWKEALDG--VTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVK 159
            I   G +   ++ ++ L    +  V+S VGG               I  ++A    G  
Sbjct: 62  AIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESI---------LDQIALVKAMKAVGTI 112

Query: 160 RFVYIS 165
           +    S
Sbjct: 113 KRFLPS 118

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 66.6 bits (163), Expect = 6e-14
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           ++L+ G  G  G H+    L       V + +R   +         +    G L  ++  
Sbjct: 7   RVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH-----PRLDNPVGPL--AELL 59

Query: 116 KEALDGVTAVISCVG----GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            +    +     C+G      GS      ++    +   + A E G + ++ +SA 
Sbjct: 60  PQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSAL 115

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 67.5 bits (164), Expect = 1e-13
 Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 13/119 (10%)

Query: 60  LVLGGNGFVGSHICREALDRGL-----TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           L++G  G +G+ +               V  ++R  R +  +     + + Q ++   D 
Sbjct: 5   LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNP--INYVQCDISDPDD 62

Query: 115 WKEALDGVTAVISCVGGFGSNSY----MYKINGTANINAIRAASE--KGVKRFVYISAA 167
            +  L  +T V        +N        + N     N + A       +K     +  
Sbjct: 63  SQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGR 121

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 59  LLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           + V G  G +G  + +  L +     + ++ R+            V    G+    +S +
Sbjct: 3   IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNV-EKASTLADQGVEVRHGDYNQPESLQ 61

Query: 117 EALDGVTAV--ISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           +A  GV+ +  IS         Y   +    + N ++AA + GVK   Y   A
Sbjct: 62  KAFAGVSKLLFIS------GPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA 108

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 9/145 (6%)

Query: 31  STDSNKVDEP-LKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS 89
              +N  D      +E E     P  + K+ + G  GF+ SHI R     G  V +    
Sbjct: 3   MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIAS-DW 61

Query: 90  GRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVI---SCVGGFGSNSY----MYKIN 142
            ++           +H  +L   ++  +  +GV  V    + +GG G        +   N
Sbjct: 62  KKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNN 121

Query: 143 GTANINAIRAASEKGVKRFVYISAA 167
              + N I AA   G+KRF Y S+A
Sbjct: 122 TMISFNMIEAARINGIKRFFYASSA 146

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 20/117 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           +LLV G  G +G  +          +     S           N    Q +L  +++   
Sbjct: 5   RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGP----NEECVQCDLADANAVNA 60

Query: 118 ALDGVTAVI---------SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
            + G   ++                 N     I G  N+    AA   G  R V+ S
Sbjct: 61  MVAGCDGIVHLGGISVEKPFEQILQGN-----IIGLYNL--YEAARAHGQPRIVFAS 110

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 54  PPSEKLLVLGGNGFVGSHICREALDRGL----TVASLSRSG--RSSLRDSWANNVIWHQ- 106
           P    +LV G NGFV SH+  + L+ G     T  S S+    +      +         
Sbjct: 9   PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68

Query: 107 GNLLSSDSWKEALDGVTAVI---SCVGGFGSNSYMYK--INGTANINAIRAAS-EKGVKR 160
            ++L   ++ E + G   V    S V        +    I GT  +NA+RAA+    VKR
Sbjct: 69  EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGT--LNALRAAAATPSVKR 126

Query: 161 FVYIS 165
           FV  S
Sbjct: 127 FVLTS 131

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
            +++ G  G +G+HI  +A+   +       R+    + D W   V   Q +  + +S  
Sbjct: 2   NIMLTGATGHLGTHITNQAIANHIDHFHIGVRN-VEKVPDDWRGKVSVRQLDYFNQESMV 60

Query: 117 EALDGVTAV--ISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           EA  G+  V  I       S  +          N + AA + GV   ++I   
Sbjct: 61  EAFKGMDTVVFIP------SIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYY 107

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 23/121 (19%), Positives = 35/121 (28%), Gaps = 24/121 (19%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSR--SGRSSLRDSWANNVIWHQGNLLSSD 113
             +LLV G  G VGS I          V        G +        +      +L  + 
Sbjct: 2   LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------EAHEEIVACDLADAQ 55

Query: 114 SWKEALDGVTAVI---------SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYI 164
           +  + +     +I                +N     I G  N+    AA   G  R V+ 
Sbjct: 56  AVHDLVKDCDGIIHLGGVSVERPWNDILQAN-----IIGAYNL--YEAARNLGKPRIVFA 108

Query: 165 S 165
           S
Sbjct: 109 S 109

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 6/129 (4%)

Query: 59  LLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWAN-NVIWHQGNLLSSDSWK 116
           ++V GG G  G  + R  L+ G   V  ++R+ R               QG+       +
Sbjct: 8   VVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIME 67

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA--ADFGVANY 174
            AL+G  A       + S S   ++           A   G+   VY          A  
Sbjct: 68  LALNGAYATFIVTNYWESCSQEQEV--KQGKLLADLARRLGLHYVVYSGLENIKKLTAGR 125

Query: 175 LLQGYYEGK 183
           L   +++GK
Sbjct: 126 LAAAHFDGK 134

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 50  NVPPPPSEKLLVLGGNGFVGSHICREALDRGL----TVASLSRSGR-SSLRDSW-ANNVI 103
              P   +   V+GG GFV S + +  L +G     TV       + S L +     ++ 
Sbjct: 3   TQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLK 62

Query: 104 WHQGNLLSSDSWKEALDGVTAVI---SCVGGFGSNSY---MYK--INGTANINAIRAASE 155
             + +L    S++  + G   V    + V  F S      M K  I G  N+  ++A + 
Sbjct: 63  IFRADLTDELSFEAPIAGCDFVFHVATPV-HFASEDPENDMIKPAIQGVVNV--MKACTR 119

Query: 156 -KGVKRFVYIS 165
            K VKR +  S
Sbjct: 120 AKSVKRVILTS 130

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
            ++V GG GF+GSH+  + L     +    +LS SG     +         + +L + D 
Sbjct: 3   LIVVTGGAGFIGSHVV-DKLSESNEIVVIDNLS-SGN---EEFVNEAARLVKADLAADD- 56

Query: 115 WKEALDGVTAVI-----SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYIS-AA 167
            K+ L G   V        V     N   +Y+ N  A    + A  + GV R V+ S + 
Sbjct: 57  IKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTST 116

Query: 168 DFGVANYL 175
            +G A  +
Sbjct: 117 VYGEAKVI 124

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++LV GG GF+GSHI  + L RGL VA   +L+   R ++       V + + +L   + 
Sbjct: 2   RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK----GVPFFRVDLRDKEG 57

Query: 115 WKEALDG--VTAVI-----SCVGGFGSNS-----YMYKINGTANINAIRAASEKGVKRFV 162
            + A      T V      + V      S       +++N    +N + A  + GV++ V
Sbjct: 58  VERAFREFRPTHVSHQAAQASVK----VSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV 113

Query: 163 YIS--AADFG 170
           + S   A +G
Sbjct: 114 FASTGGAIYG 123

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 25/119 (21%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASL--SRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           K+ V GG GF+G ++     + G T   L  S   ++       N+  +   +    D  
Sbjct: 4   KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA------INDYEYRVSDYTLED-L 56

Query: 116 KEALDGVTAVI---------SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
              L+ V AV+           +  F  N        T N+    A  E  +   VY S
Sbjct: 57  INQLNDVDAVVHLAATRGSQGKISEFHDN-----EILTQNL--YDACYENNISNIVYAS 108

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++L+ GG G +GS++    L +G  +    + +   R  L       +   +G++  +  
Sbjct: 22  RILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP--PVAGLSVIEGSVTDAGL 79

Query: 115 WKEALDG--VTAVI-----SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS-A 166
            + A D    T V+            +      + G+  IN  +AAS+ GVKR +    A
Sbjct: 80  LERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGS--INVAKAASKAGVKRLLNFQTA 137

Query: 167 ADFGVANYL 175
             +G    +
Sbjct: 138 LCYGRPATV 146

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 26/129 (20%)

Query: 57  EKLLVLGGNGFVGSHICREALDRGLTV-ASLSRSGRSSLRDSWANNVIW----------- 104
            ++ V GG GF+GS I +  L+ G +V  ++    R+        + +            
Sbjct: 2   GRVCVTGGTGFLGSWIIKSLLENGYSVNTTI----RADPERKRDVSFLTNLPGASEKLHF 57

Query: 105 HQGNLLSSDSWKEALDGVTAVISCVGGFGSNS-----YMYK--INGTANINAIRAASE-K 156
              +L + DS+  A++G   +                 + K  ++G   I  ++A    K
Sbjct: 58  FNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGI--LKACVNSK 115

Query: 157 GVKRFVYIS 165
            VKRF+Y S
Sbjct: 116 TVKRFIYTS 124

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 60  LVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
            + G  G +G ++    +       + ++ R+  +  +   A  +   Q +     +   
Sbjct: 3   AITGATGQLGHYVIESLMKTVPASQIVAIVRNP-AKAQALAAQGITVRQADYGDEAALTS 61

Query: 118 ALDGVTAV--ISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           AL GV  +  IS                  + N I AA   GVK   Y S  
Sbjct: 62  ALQGVEKLLLISSSEVGQR--------APQHRNVINAAKAAGVKFIAYTSLL 105

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGL----TVASLSRSGR-SSLRDSW--ANNVIWHQGN 108
           SE + V G +GF+GS +    L+RG     TV   +   +   L D      ++   + +
Sbjct: 5   SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKAD 64

Query: 109 LLSSDSWKEALDGVTAVISCVGGFGSNS-----YMYK--INGTANINAIRAASE-KGVKR 160
           L    S+ EA+ G T V          S      + K  I G   I  +++ +  K V+R
Sbjct: 65  LADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGI--MKSCAAAKTVRR 122

Query: 161 FVYIS 165
            V+ S
Sbjct: 123 LVFTS 127

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 32/132 (24%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTV-----------ASLSRSGRSSLRDSWANNVIWHQ 106
             L+ G  GF+GS++    L     V            +L    RS + +   +N  + Q
Sbjct: 29  VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEV-RSLVSEKQWSNFKFIQ 87

Query: 107 GNLLSSDSWKEALDGVTAVI--SCVGG-----------FGSNSYMYKINGTANINAIRAA 153
           G++ + D    A  GV  V+  + +G              +N     I+G  N+  + AA
Sbjct: 88  GDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN-----IDGFLNM--LIAA 140

Query: 154 SEKGVKRFVYIS 165
            +  V+ F Y +
Sbjct: 141 RDAKVQSFTYAA 152

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+ + G  G +GSHI    L+RG  V    + +   R  L+D    N+ + +G++     
Sbjct: 23  KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH--PNLTFVEGSIADHAL 80

Query: 115 WKEALDGV--TAVI----SCVGGFGSNSYMYKINGTANI----NAIRAASEKGVKRFVYI 164
             + +  +   AV+    S       +   +  +   N     N ++AA +  V RFVY 
Sbjct: 81  VNQLIGDLQPDAVVHTAAS-----YKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYF 135

Query: 165 SAA 167
             A
Sbjct: 136 QTA 138

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+L+ G  G +G  + R    +G  V  L RS            V     ++   D+   
Sbjct: 5   KILIAGC-GDLGLELARRLTAQGHEVTGLRRSA-----QPMPAGVQTLIADVTRPDTLAS 58

Query: 118 ALDG-VTAVISCVG-GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            +      ++ CV     S+ +          N + A     ++   ++S+ 
Sbjct: 59  IVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSST 110

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 26/133 (19%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           +++V GG GF+GSH+  + ++ G  V    +LS SGR   R+    +   H  +L     
Sbjct: 2   RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLS-SGR---REFVNPSAELHVRDLKDYSW 57

Query: 115 WKEALDGVTAVI-----SCVGGFGSNSYM------YKINGTANINAIRAASEKGVKRFVY 163
                     V        V               +  N  A  N +  A + GV+  V+
Sbjct: 58  GAGI--KGDVVFHFAANPEVR-----LSTTEPIVHFNENVVATFNVLEWARQTGVRTVVF 110

Query: 164 IS-AADFGVANYL 175
            S +  +G A+ +
Sbjct: 111 ASSSTVYGDADVI 123

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 32/132 (24%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTV-----------ASLSRSGRSSLRDSWANNVIWHQ 106
             L+ G  GF+GS++  + L     V            +L         + W+    + +
Sbjct: 27  TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-RFCFIE 85

Query: 107 GNLLSSDSWKEALDGVTAVI--SCVGG-----------FGSNSYMYKINGTANINAIRAA 153
           G++    + ++ + GV  V+  + +G              +N     I G  NI  + AA
Sbjct: 86  GDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATN-----ITGFLNI--LHAA 138

Query: 154 SEKGVKRFVYIS 165
               V+ F Y +
Sbjct: 139 KNAQVQSFTYAA 150

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 11/69 (15%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
            + + G  G VG  +  +    G  V  L R               W        +   +
Sbjct: 149 TVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK------PGKRFWD-----PLNPASD 197

Query: 118 ALDGVTAVI 126
            LDG   ++
Sbjct: 198 LLDGADVLV 206

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 11/136 (8%)

Query: 53  PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN--NVIWHQGNLL 110
               + + V+G  G  G+ + R A   G  V +   S +  + +      NV   QG LL
Sbjct: 2   AQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLL 61

Query: 111 SS-DSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAAD 168
           ++        +G          F + +           +   AA   G ++ ++Y S  D
Sbjct: 62  NNVPLMDTLFEGAHLA------FINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115

Query: 169 FGVAN-YLLQGYYEGK 183
             +   +     +  K
Sbjct: 116 HSLYGPWPAVPMWAPK 131

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330

 Score = 50.9 bits (123), Expect = 5e-08
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
            +L+ GG G++GSH  ++ +D GL+V    +L      ++ +       ++ G+L     
Sbjct: 3   SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITE----GAKFYNGDLRDKAF 58

Query: 115 WKEALD--GVTAVI-----SCVGGFGSNSYMYKINGTAN-INAIRAASEKGVKRFVYIS- 165
            ++      + AV+     S VG        Y  N     +  +    E  V +F++ S 
Sbjct: 59  LRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118

Query: 166 AADFG 170
           AA +G
Sbjct: 119 AATYG 123

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 41/157 (26%)

Query: 46  AETVNVPPPPSEKLLVL--GGNGFVGSHICREALDR---GLTVASLSRSGR--------- 91
           A  VN+P P  E   VL  G  GF+G ++  E L R      +  L R+           
Sbjct: 61  ATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLE 120

Query: 92  -----------SSLRDSWANNVIWHQGNL------LSSDSWKEALDGVTAVISCVGG--- 131
                         ++  A+ +    G+       L    W+   + V  ++        
Sbjct: 121 KTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDS--AAMV 178

Query: 132 -FGSNSYMYKIN--GTANINAIRAASEKGVKRFVYIS 165
                  ++  N  GTA +  IR A    +K F Y+S
Sbjct: 179 NAFPYHELFGPNVAGTAEL--IRIALTTKLKPFTYVS 213

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++L+ GG GF+G H+ R  +  G  V     L                 + +  +L  + 
Sbjct: 9   RILITGGAGFIGGHLARALVASGEEVTVLDDLR-VPP---MIPPEGTGKFLEKPVL--EL 62

Query: 115 WKEALDGVTAVI--SCVGG---FGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
            +  L  V  V   +              Y  N  +  + +   +  GV + V  S
Sbjct: 63  EERDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGS 118

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G +G +G+ +     ++      ++    S +       + +   ++ + D    A+
Sbjct: 3   LVTGSSGQIGTELVPYLAEKYGKKNVIA----SDIVQRDTGGIKFITLDVSNRDEIDRAV 58

Query: 120 D--GVTAVISCVGGFGSNS-----YMYKINGTANINAIRAASEKGVKRFVYIS-AADFG 170
           +   + A+    G   +         YK+N     N + AA +  V++ V  S    FG
Sbjct: 59  EKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFG 117

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 23/156 (14%)

Query: 58  KLLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD 113
            ++V+GG GFVGS++ +  L+ G      V +L  + + ++ D     V + + ++    
Sbjct: 34  NVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDH--PAVRFSETSITDDA 91

Query: 114 SWKEALDGVTAVI----------SCVGGFGSNSYMYKINGTANINAIRAASE-KGVKRFV 162
                 D    V           S       +    + N    +         K +K+ V
Sbjct: 92  LLASLQDEYDYVFHLATYHGNQSSIHDPLADH----ENNTLTTLKLYERLKHFKRLKKVV 147

Query: 163 YISAAD--FGVANYLLQGYYEGKDSNLSPLLACYSL 196
           Y +A            +   E    +L    + YS+
Sbjct: 148 YSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSM 183

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+L+LG NGF+G H+ +  L+     +    +       L       + + +G++  +  
Sbjct: 26  KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH--ERMHFFEGDITINKE 83

Query: 115 WKEALDG-VTAVISCVGGFGSNSYMY------KINGTANINAIRAASEKGVKRFVYIS 165
           W E        ++  V      +Y+       +++  AN+  +R+A + G K  V+ S
Sbjct: 84  WVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPS 140

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLT----VASLSRSGRSSLRDSWANNVIWHQGNLLSSD 113
            ++V GG GF+GS+I +   D+G+T    V +L    +              + + L   
Sbjct: 48  MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI 107

Query: 114 SWKEALDGVTAVI---SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYISAA 167
              E    V A+    +C      +  YM   N   +   +    E+ +  F+Y S+A
Sbjct: 108 MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSA 164

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 18/114 (15%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSRS--GRSSLRDSWANNVIWHQGNLLSSD 113
           +  LL  G  G+    + R    +G  +   SR+     ++R S A  ++W         
Sbjct: 5   TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLW--------P 55

Query: 114 SWKEALDGVTAVISCVG-GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA 166
             + +LDGVT ++       G +  +      A +    AA     +   Y+S 
Sbjct: 56  GEEPSLDGVTHLLISTAPDSGGDPVL------AALGDQIAARAAQFRWVGYLST 103

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 50  NVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN-NVIWHQGN 108
                   ++L+LG NGF+G+H+    L            G  ++     + +  + +G+
Sbjct: 309 ACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGD 368

Query: 109 LLSSDSWKEALDGVT-AVISCVGGFGSNSYM------YKINGTANINAIRAASEKGVKRF 161
           +     W E        V+  V       Y       ++++   N+  IR   +   KR 
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRI 427

Query: 162 VYIS 165
           ++ S
Sbjct: 428 IFPS 431

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 12/110 (10%), Positives = 33/110 (30%), Gaps = 21/110 (19%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
            +++ G  GFVG ++  +                        ++ I+        +  + 
Sbjct: 2   NIVITGAKGFVGKNLKADLTSTT-------------------DHHIFEVHRQTKEEELES 42

Query: 118 ALDGVTAVI--SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
           AL     ++  + V     +      N +   + +   +    K  + +S
Sbjct: 43  ALLKADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLS 92

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 60  LVLGGNGFVGSHICREALDRGLT----VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           +V GG GF+GS+I +   D+G+T    V +L    +              + + L     
Sbjct: 3   IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMA 62

Query: 116 KEALDGVTAVI---SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYI-SAADFG 170
            E    V A+    +C      +  YM   N   +   +    E+ +  F+Y  SAA +G
Sbjct: 63  GEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYG 121

Query: 171 VANYLLQGYYEGKDSNLSPL 190
                    +        PL
Sbjct: 122 GRTSD----FIESREYEKPL 137

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 19/107 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
            + V+G  G +G  I           +TVA    +  + L       V   Q +      
Sbjct: 7   NICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM---GVATKQVDAKDEAG 62

Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRF 161
             +AL G  AVIS                       +AA   G   F
Sbjct: 63  LAKALGGFDAVISA------------APFFLTPIIAKAAKAAGAHYF 97

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRS------GRSSLRDSWANNVIWHQGNLLS 111
            + ++G  G VG  + +  +  G                +      ++  V     +L +
Sbjct: 16  HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSA 75

Query: 112 SDSWKEALD-GVTAVI---SCVGGFGSNSYM--YKIN--GTANI-NAIRAASEKG--VKR 160
               ++ ++     +    + V G     +   Y+IN  GT  + +AIR A+ K     R
Sbjct: 76  PGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPR 135

Query: 161 FVYIS-AADFG 170
            V+ S  A FG
Sbjct: 136 VVFTSSIAVFG 146

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++L+LG NGF+G+H+    L      +    +     S   +    +  + +G++     
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH--PHFHFVEGDISIHSE 59

Query: 115 WKEALDG-VTAVISCVGGFGSNSYMY------KINGTANINAIRAASEKGVKRFVYIS 165
           W E        V+  V       Y        +++   N+  IR   +   KR ++ S
Sbjct: 60  WIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPS 116

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 25/131 (19%)

Query: 56  SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           + K+L++G  G +G+ + ++     G     +  S    L     N+  +   N L  + 
Sbjct: 2   NPKILIIGACGQIGTELTQKLRKLYGTEN--VIASDIRKLNTDVVNSGPFEVVNALDFNQ 59

Query: 115 WKE--------------ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKR 160
            +               AL   TA  +    +  N     +N   ++  +  A  K +K+
Sbjct: 60  IEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN-----MNSLFHV--LNLAKAKKIKK 112

Query: 161 FVYIS-AADFG 170
             + S  A FG
Sbjct: 113 IFWPSSIAVFG 123

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 24/135 (17%)

Query: 52  PPPPSEKLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLR--DSWAN-NVIWH 105
               S+ +LV GG G++GSH   E ++ G       +LS S   S+   +     ++ ++
Sbjct: 7   SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFY 66

Query: 106 QGNLLSSDSWKEALDGV------TAVISC-----VGGFGSN--SYMYKINGTANINAIRA 152
           + +L      ++ L+ V       +VI       VG        Y Y  N    +  +  
Sbjct: 67  EVDLCD----RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRY-YHNNILGTVVLLEL 121

Query: 153 ASEKGVKRFVYISAA 167
             +  V +FV+ S+A
Sbjct: 122 MQQYNVSKFVFSSSA 136

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
          +++V+GG+G+ G         +   V
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEV 38

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 30/137 (21%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASL-----SRSGRSSLRDSWA-------NNVI 103
           +EK+LV GG G++GSH   E L+ G     +     +  G  SL +S          +V 
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61

Query: 104 WHQGNLLSSDSWKEALDGV------TAVISC-----VGGFGSN--SYMYKINGTANINAI 150
           + + ++L     + AL  +       AVI       VG        Y Y++N T  I  +
Sbjct: 62  FEEMDILD----QGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDY-YRVNLTGTIQLL 116

Query: 151 RAASEKGVKRFVYISAA 167
                 GVK  V+ S+A
Sbjct: 117 EIMKAHGVKNLVFSSSA 133

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 34/151 (22%), Positives = 50/151 (33%), Gaps = 43/151 (28%)

Query: 58  KLLVLGGNGFVGSHICREAL-DRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSD 113
           ++LV GG G++GSH  R  L D   +V    SL  +   S       NV           
Sbjct: 4   RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63

Query: 114 SW---------------KEALDGV-------TAVI-----SCVGGFGSNS------YMYK 140
                            ++ L+GV        AV+       VG     S      Y Y 
Sbjct: 64  PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVG----ESVRDPLKY-YD 118

Query: 141 INGTANINAIRAASEKGVKRFVYIS-AADFG 170
            N    +  ++A       + ++ S AA FG
Sbjct: 119 NNVVGILRLLQAMLLHKCDKIIFSSSAAIFG 149

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 24/129 (18%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLR--DSWAN-NVIWHQGNLLS 111
           ++LV GG+G++GSH C + L  G  V    +L  S RS L   +     +  + +G++ +
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61

Query: 112 SDSWKEALDGV------TAVISC-----VGGFGSN--SYMYKINGTANINAIRAASEKGV 158
               +  +  +        VI       VG        Y Y  N    +  I A     V
Sbjct: 62  ----EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEY-YDNNVNGTLRLISAMRAANV 116

Query: 159 KRFVYISAA 167
           K F++ S+A
Sbjct: 117 KNFIFSSSA 125

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 24/129 (18%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLR--DSWAN-NVIWHQGNLLS 111
            +LV GG G++GSH   E L  G  V    +L  S R ++   +        +H+ ++  
Sbjct: 7   TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD 66

Query: 112 SDSWKEALDGV------TAVISC-----VGGFGSN--SYMYKINGTANINAIRAASEKGV 158
               + AL  +      TA I       VG   +    Y Y+ N  + ++ +R   E+ V
Sbjct: 67  ----ERALARIFDAHPITAAIHFAALKAVGESVAKPIEY-YRNNLDSLLSLLRVMRERAV 121

Query: 159 KRFVYISAA 167
           KR V+ S+A
Sbjct: 122 KRIVFSSSA 130

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 22/130 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRGL--------------TVASLSRSGRSSLRDSWANNVI 103
            +L+ GG GFVGS++     +                   ++   S     ++       
Sbjct: 12  TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71

Query: 104 WHQGNLLSSDSWKEALD-GVTAVISCVGGFGSNS-----YMYKINGTANINAIRAASEKG 157
               ++ +    +         +          +      + K N  A +N +  A  K 
Sbjct: 72  VIAADINNPLDLRRLEKLHFDYLFHQ-AAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK 130

Query: 158 VKRFVYISAA 167
            K  +Y S+A
Sbjct: 131 AK-VIYASSA 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.94
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.94
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.93
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.93
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.93
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.93
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.93
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.93
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.92
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.92
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.92
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.92
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.92
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.92
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.92
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.92
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.92
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.92
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.91
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.91
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.91
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.91
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.91
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.91
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.91
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.91
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.91
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.91
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.91
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.91
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.91
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.91
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.91
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.91
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.91
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.91
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.91
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.9
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.9
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.9
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.9
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.9
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.9
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.9
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.9
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.9
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.9
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.9
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.9
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.89
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.89
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.89
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.89
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.89
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.89
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.89
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.89
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.89
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.89
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.89
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.88
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.88
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.88
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.88
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.88
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.88
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.88
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.88
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.88
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.88
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.88
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.88
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.88
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.88
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.88
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.88
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.88
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.88
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.88
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.88
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.88
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.88
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.88
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.88
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.88
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.88
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.88
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.88
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.88
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.87
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.87
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.87
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.87
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.87
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.87
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.87
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.87
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.87
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.87
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.87
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.87
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.87
1spx_A	278	Short-chain reductase family member (5L265); paral	99.87
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.87
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.87
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.87
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.87
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.87
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.87
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.87
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.87
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.87
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.87
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.87
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.87
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.87
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.87
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.87
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.87
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.87
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.87
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.87
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.87
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.87
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.87
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.87
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.87
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.87
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.87
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.87
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.87
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.87
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.87
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.87
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.87
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.87
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.87
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.86
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.86
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.86
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.86
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.86
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.86
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.86
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.86
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.86
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.86
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.86
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.86
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.86
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.86
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.86
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.86
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.86
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.86
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.86
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.86
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.86
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.86
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.86
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.86
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.86
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.86
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.86
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.86
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.86
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.86
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.86
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.86
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.86
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.86
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.86
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.86
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.86
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.86
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.86
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.86
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.86
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.86
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.86
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.86
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.86
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.86
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.86
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.86
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.86
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.86
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.86
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.86
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.85
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.85
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.85
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.85
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.85
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.85
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.85
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.85
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.85
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.85
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.85
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.85
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.85
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.85
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.85
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.85
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.85
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.85
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.85
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.85
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.85
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.85
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.85
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.85
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.85
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.85
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.85
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.85
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.85
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.85
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.85
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.85
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.85
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.85
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.85
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.85
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.85
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.85
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.85
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.85
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.85
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.85
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.85
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.84
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.84
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.84
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.84
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.84
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.84
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.84
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.84
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.84
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.84
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.84
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.84
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.84
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.84
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.84
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.84
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.84
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.84
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.84
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.84
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.84
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.84
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.84
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.84
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.84
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.83
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.83
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.83
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.83
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.83
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.83
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.83
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.83
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.83
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.83
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.83
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.83
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.83
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.83
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.83
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.82
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.82
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.82
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.82
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.82
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.82
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.82
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.81
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.81
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.81
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.81
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.8
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.8
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.8
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.79
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.79
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.78
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.78
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.78
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.78
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.77
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.77
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.77
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.75
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.72
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.71
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.69
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.68
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.68
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.68
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.67
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.65
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.65
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.64
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.62
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.62
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.61
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.6
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.6
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.59
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.56
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.44
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.36
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	99.13
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.08
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.08
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	99.07
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.04
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.95
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.93
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.92
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.9
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.88
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.85
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.84
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.83
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.82
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.8
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.76
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.71
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.65
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.56
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.55
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.54
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.5
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.4
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.38
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.3
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.19
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.16
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.15
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.1
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.04
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.99
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.97
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.95
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.95
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.94
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.93
1lnq_A	336	MTHK channels, potassium channel related protein;	97.9
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.89
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.89
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.87
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.86
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.86
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.85
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.85
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.85
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.83
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.82
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.81
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.8
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.76
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.73
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.69
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.68
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.68
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.68
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.66
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	97.66
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.65
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.64
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.63
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.62
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.61
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.6
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.59
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.59
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.59
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.58
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.58
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.57
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.56
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.56
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.56
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.56
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	97.54
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.52
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.51
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.5
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.49
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.48
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.47
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.47
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.47
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.46
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.46
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.46
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.44
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.44
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.43
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.43
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.42
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	97.41
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.41
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.4
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.39
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	97.39
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.38
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.37
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.36
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.36
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.35
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.35
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.34
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.32
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.31
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.3
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.3
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	97.3
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.29
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.28
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.28
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.25
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.25
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.24
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.23
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.22
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.22
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.21
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.21
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.21
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.2
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.2
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.18
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.18
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.15
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.15
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.15
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	97.14
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	97.14
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.14
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.13
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.12
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.12
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.11
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.11
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.11
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.11
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.1
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.1
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.09
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.08
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.08
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.07
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.07
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	97.06
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.06
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.06
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.05
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.05
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.05
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.05
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.04
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.03
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.03
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.03
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.02
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.02
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.02
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.99
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.99
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.98
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.98
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.97
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.96
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.96
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.96
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.95
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.95
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.94
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.94
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	96.93
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.92
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.92
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.92
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.91
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.91
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.9
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.89
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.87
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.87
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.86
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.85
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.85
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.85
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.83

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.94  E-value=1.9e-26  Score=182.68  Aligned_cols=134  Identities=18%  Similarity=0.093  Sum_probs=117.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC--C
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF--G  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~--~  133 (200)
                      +|+|+||||+|+||++++++|+++|++|++++|+..+..    ..+++++.+|++|++++.++++++|+||||||..  .
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~~~~   78 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNAMVAGCDGIVHLGGISVEK   78 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCcCcC
Confidence            578999999999999999999999999999999865532    4689999999999999999999999999999974  3


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccC-----------cCCcCCcchhhhHHhhHHHHHhh
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFG-----------VANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~-----------~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +++..+++|+.++.++++++++++.++||++|| ..|+           .+..+.+.|+.||+++|.+++.+
T Consensus        79 ~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~  150 (267)
T 3rft_A           79 PFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMY  150 (267)
T ss_dssp             CHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999 4454           23355688999999999999764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1.2e-25  Score=173.34  Aligned_cols=136  Identities=24%  Similarity=0.247  Sum_probs=113.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSN  135 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~  135 (200)
                      +|+|+||||+|+||++++++|+++|++|++++|+.++...  ...+++++.+|++|++++.++++++|+|||++|.....
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~   81 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI--ENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNN   81 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC--CCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC----
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh--ccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCC
Confidence            5799999999999999999999999999999998655322  13689999999999999999999999999999987655


Q ss_pred             cccchhhHHHHHHHHHHHHHcCCCEEEEEeccc-cC-c--------CCcCCcchhhhHHhhHHHHHhh
Q 029008          136 SYMYKINGTANINAIRAASEKGVKRFVYISAAD-FG-V--------ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~-~~-~--------~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...+++|+.++.++++++++.++++||++||.. +. .        +..+.+.|+.+|++.|.+++..
T Consensus        82 ~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~  149 (227)
T 3dhn_A           82 PDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFL  149 (227)
T ss_dssp             --CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEEGGGTTCSCGGGHHHHHHHHHHHHHTG
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCccccCCcchHHHHHHHHHHHHHHHHHH
Confidence            668999999999999999999999999999943 22 1        2245688999999999877764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.93  E-value=9.7e-26  Score=184.18  Aligned_cols=135  Identities=23%  Similarity=0.212  Sum_probs=114.4

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ....+|+||||||+||||++|+++|+++|++|++++|+...       .+++++.+|++|++.+.++++++|+|||+|+.
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            33567899999999999999999999999999999998644       57889999999999999999999999999997


Q ss_pred             CCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc------------CCcCCcchhhhHHhhHHHHHhh
Q 029008          132 FGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV------------ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       132 ~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~------------~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...    +...+++|+.++.+++++|++.++++||++|| ..|+.            +..+.+.|+.+|+++|++++.+
T Consensus        88 ~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~  166 (347)
T 4id9_A           88 MSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFH  166 (347)
T ss_dssp             CCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            542    25678999999999999999999999999999 45665            2245678999999999999865

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.93  E-value=2.1e-25  Score=182.41  Aligned_cols=139  Identities=19%  Similarity=0.208  Sum_probs=117.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccC----C------CCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW----A------NNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----~------~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ++|+|+||||+||||++|+++|+++|++|++++|..........    .      .+++++.+|++|++.+.++++++|+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  103 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH  103 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence            57899999999999999999999999999999997654221100    0      6899999999999999999999999


Q ss_pred             EEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhH
Q 029008          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNL  187 (200)
Q Consensus       125 vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E  187 (200)
                      |||+||...      ++...+++|+.++.+++++|++.++++|||+|| ..|+...          .+.+.|+.+|+++|
T Consensus       104 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E  183 (351)
T 3ruf_A          104 VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNE  183 (351)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHH
T ss_pred             EEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCCCCCCCChhHHHHHHHH
Confidence            999999643      345678999999999999999999999999999 4565432          34678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      ++++.+
T Consensus       184 ~~~~~~  189 (351)
T 3ruf_A          184 IYAQVY  189 (351)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.93  E-value=7.8e-25  Score=176.50  Aligned_cols=134  Identities=21%  Similarity=0.189  Sum_probs=114.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC-
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG-  133 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~-  133 (200)
                      |+|+|+||||+||||++++++|+++|++|++++|+.... .   ..+++++.+|++ ++.+.++++++|+|||+||... 
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~---~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~~~   75 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK-A---INDYEYRVSDYT-LEDLINQLNDVDAVVHLAATRGS   75 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHTTTCSEEEECCCCCCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcc-c---CCceEEEEcccc-HHHHHHhhcCCCEEEEccccCCC
Confidence            468999999999999999999999999999999983322 2   238899999999 9999999999999999999754 


Q ss_pred             -CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhh
Q 029008          134 -SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 -~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                       ++...+++|+.++.+++++|++.++++||++|| ..|+...          .+.+.|+.+|+++|++++++
T Consensus        76 ~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  147 (311)
T 3m2p_A           76 QGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIY  147 (311)
T ss_dssp             SSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Confidence             567788999999999999999999999999999 4565432          34678999999999999975

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.93  E-value=2.8e-25  Score=170.69  Aligned_cols=130  Identities=22%  Similarity=0.252  Sum_probs=112.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCC-HHHHHHHhcCCCEEEEccccCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEALDGVTAVISCVGGFGSN  135 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~d~vi~~ag~~~~~  135 (200)
                      |+|+||||+|+||++++++|+++|++|++++|+.++...   ..+++++.+|++| ++++.++++++|+||||+|...  
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~--   75 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ---YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG--   75 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC---CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT--
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh---cCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC--
Confidence            489999999999999999999999999999998655322   2689999999999 9999999999999999999765  


Q ss_pred             cccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCc-------CCcchhhhHHhhHHHHH
Q 029008          136 SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANY-------LLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~-------~~~~Y~~sK~~~E~~~~  191 (200)
                      ...+++|+.++.+++++|++.++++||++||.....+.+       +...|+.+|+++|++++
T Consensus        76 ~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~e~~~~~~~~Y~~sK~~~e~~~~  138 (219)
T 3dqp_A           76 KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPEKWIGAGFDALKDYYIAKHFADLYLT  138 (219)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGGGCCSHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCCcccccccccccHHHHHHHHHHHHHH
Confidence            348899999999999999999999999999953222222       26789999999999994

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.93  E-value=1.1e-24  Score=180.33  Aligned_cols=141  Identities=21%  Similarity=0.232  Sum_probs=118.5

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++.++|+|+||||+||||++++++|+++|++|++++|+...... ....+++++.+|++|++++.++++++|+|||+||.
T Consensus        25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           25 WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT-EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             CTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC-GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh-hccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            33467899999999999999999999999999999998655322 12347899999999999999999999999999996


Q ss_pred             CC-------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc-----------------CCcCCcchhhhHHhh
Q 029008          132 FG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV-----------------ANYLLQGYYEGKDSN  186 (200)
Q Consensus       132 ~~-------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~-----------------~~~~~~~Y~~sK~~~  186 (200)
                      ..       ++...+++|+.++.+++++|++.++++||++|| ..|+.                 +..+.+.|+.+|+++
T Consensus       104 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~~~  183 (379)
T 2c5a_A          104 MGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLAT  183 (379)
T ss_dssp             CCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHHH
T ss_pred             cCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHHHHHHH
Confidence            43       345678999999999999999999999999999 45653                 223567899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |++++.+
T Consensus       184 E~~~~~~  190 (379)
T 2c5a_A          184 EELCKHY  190 (379)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.93  E-value=7.9e-25  Score=178.18  Aligned_cols=138  Identities=17%  Similarity=0.117  Sum_probs=111.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC-
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG-  133 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~-  133 (200)
                      ++|+|+||||+||||++++++|+++|++|++++|+...... ....+++++.+|++|++++.++++++|+|||+||... 
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~~~~   90 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR-LAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYYPS   90 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG-GGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC------
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh-hccCCeEEEEecCCCHHHHHHHHcCCCEEEECCccCcC
Confidence            44699999999999999999999999999999998655321 1123789999999999999999999999999999643 


Q ss_pred             ---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc-----------C----CcchhhhHHhhHHHHHhh
Q 029008          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY-----------L----LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~~-----------~----~~~Y~~sK~~~E~~~~~~  193 (200)
                         ++...+++|+.++.+++++|.+.++++||++|| ..|+....           +    .+.|+.+|+++|++++++
T Consensus        91 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~~~~~Y~~sK~~~e~~~~~~  169 (342)
T 2x4g_A           91 RPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQ  169 (342)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCBCTTCCCSSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCCCCCCCCCccccccChHHHHHHHHHHHHHHH
Confidence               456788999999999999999999999999999 45554322           2    678999999999999874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.92  E-value=1.3e-24  Score=176.64  Aligned_cols=142  Identities=20%  Similarity=0.284  Sum_probs=117.3

Q ss_pred             CCCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhc--CCCEEEE
Q 029008           51 VPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (200)
Q Consensus        51 ~~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~  127 (200)
                      +....+|+|+||||+||||++++++|+++|++|++++|+....... ....+++++.+|++|++++.++++  ++|+|||
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            3445678999999999999999999999999999999975442210 112578999999999999999998  9999999


Q ss_pred             ccccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----c------CCcchhhhHHhhHHHHHh
Q 029008          128 CVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----Y------LLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       128 ~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----~------~~~~Y~~sK~~~E~~~~~  192 (200)
                      |||....    ... +++|+.++.+++++|.+.++++||++|| ..|+...    +      +.+.|+.+|+++|++++.
T Consensus        95 ~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~~~~~~Y~~sK~~~e~~~~~  173 (330)
T 2pzm_A           95 SAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMM  173 (330)
T ss_dssp             CCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCCCCCSHHHHHHHHHHHHHHT
T ss_pred             CCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCCCCCChHHHHHHHHHHHHHH
Confidence            9996542    112 7899999999999999999999999999 4566442    1      668999999999999987


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      +
T Consensus       174 ~  174 (330)
T 2pzm_A          174 S  174 (330)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.92  E-value=4e-25  Score=182.23  Aligned_cols=140  Identities=17%  Similarity=0.227  Sum_probs=118.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCC-CHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLL-SSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .++|+|+||||+||||++|+++|+++ |++|++++|+.+.........+++++.+|++ |.+.+.++++++|+|||+||.
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~  101 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI  101 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCcc
Confidence            35789999999999999999999998 9999999998765433333468999999999 999999999999999999996


Q ss_pred             CC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchhhhHHhhH
Q 029008          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKDSNL  187 (200)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------------~~~~~Y~~sK~~~E  187 (200)
                      ..      ++...+++|+.++.+++++|++.+ ++|||+|| ..|+...                 .+.+.|+.+|+++|
T Consensus       102 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK~~~E  180 (372)
T 3slg_A          102 ATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMD  180 (372)
T ss_dssp             CCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHHHHHH
T ss_pred             ccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHHHHHHH
Confidence            54      345678999999999999999999 89999999 4566421                 23447999999999


Q ss_pred             HHHHhhc
Q 029008          188 SPLLACY  194 (200)
Q Consensus       188 ~~~~~~~  194 (200)
                      ++++++.
T Consensus       181 ~~~~~~~  187 (372)
T 3slg_A          181 RVIWGYG  187 (372)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999863

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.92  E-value=1.4e-24  Score=176.68  Aligned_cols=139  Identities=21%  Similarity=0.261  Sum_probs=114.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccC-CCCeeEEEccCCCHHHHHHHhcC--CCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALDG--VTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~ag  130 (200)
                      ..+|+|+||||+||||++++++|+++|++|++++|+.....+... ..+++++.+|++|++.+++++++  +|+||||||
T Consensus        19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   98 (333)
T 2q1w_A           19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAA   98 (333)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECce
Confidence            467899999999999999999999999999999997644222111 15789999999999999999987  999999999


Q ss_pred             cCCCC---cccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccC----cCC-------cCC-cchhhhHHhhHHHHHh
Q 029008          131 GFGSN---SYMYKINGTANINAIRAASEKGVKRFVYISA-ADFG----VAN-------YLL-QGYYEGKDSNLSPLLA  192 (200)
Q Consensus       131 ~~~~~---~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~----~~~-------~~~-~~Y~~sK~~~E~~~~~  192 (200)
                      .....   +..+++|+.++.+++++|.+.++++||++|| ..|+    ...       .+. +.|+.+|+++|++++.
T Consensus        99 ~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~~~~E~~~p~~~~Y~~sK~~~E~~~~~  176 (333)
T 2q1w_A           99 SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEY  176 (333)
T ss_dssp             CCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSBCTTSCCCCTTCHHHHHHHHHHHHHHH
T ss_pred             ecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCCCcCCCCCCCCCchHHHHHHHHHHHHh
Confidence            75431   1118899999999999999999999999999 4566    322       345 7899999999999988

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.92  E-value=1.6e-24  Score=175.66  Aligned_cols=137  Identities=20%  Similarity=0.293  Sum_probs=115.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~  133 (200)
                      ||+|+||||+||||++++++|+++|++|++++|......+. ...+++++.+|++|++.+.++++  ++|+|||+||...
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~   79 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDA-ITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSL   79 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG-SCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhh-cCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccC
Confidence            57999999999999999999999999999999876543222 22378999999999999999998  8999999999653


Q ss_pred             ------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhh
Q 029008          134 ------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                            ++...+++|+.++.+++++|++.++++||++|| ..|+...          .+.+.|+.+|+++|++++.+
T Consensus        80 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~  156 (330)
T 2c20_A           80 VGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWY  156 (330)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHHHHHHHHHHHH
Confidence                  445678999999999999999999999999999 4565422          34678999999999999875

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.92  E-value=2.7e-24  Score=176.79  Aligned_cols=140  Identities=16%  Similarity=0.130  Sum_probs=117.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHH--CCCcEEEeecCCC------------CcccccCCCCeeEEEccCCCHHHHHHH-
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALD--RGLTVASLSRSGR------------SSLRDSWANNVIWHQGNLLSSDSWKEA-  118 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~--~g~~V~~~~r~~~------------~~~~~~~~~~~~~~~~Dl~d~~~~~~~-  118 (200)
                      ..+|+|+||||+||||++++++|++  +|++|++++|...            .........++.++.+|++|++.++++ 
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   87 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLE   87 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHT
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhh
Confidence            4578999999999999999999999  9999999999765            111222244679999999999999999 


Q ss_pred             hcCCCEEEEccccCC----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------cCCcchhhhHH
Q 029008          119 LDGVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------YLLQGYYEGKD  184 (200)
Q Consensus       119 ~~~~d~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~---------~~~~~Y~~sK~  184 (200)
                      ..++|+||||||...    .+...+++|+.++.+++++|++.+++ ||++|| ..|+...         .|.+.|+.+|+
T Consensus        88 ~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~~~~E~~~~~p~~~Y~~sK~  166 (362)
T 3sxp_A           88 KLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKAPNVVGKNESPENVYGFSKL  166 (362)
T ss_dssp             TSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCSSBCTTSCCCCSSHHHHHHH
T ss_pred             ccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCCCCCCCCCCCCCChhHHHHH
Confidence            889999999999643    45678899999999999999999886 999999 4566533         34567999999


Q ss_pred             hhHHHHHhhc
Q 029008          185 SNLSPLLACY  194 (200)
Q Consensus       185 ~~E~~~~~~~  194 (200)
                      ++|++++.+.
T Consensus       167 ~~E~~~~~~~  176 (362)
T 3sxp_A          167 CMDEFVLSHS  176 (362)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.92  E-value=1.4e-24  Score=177.79  Aligned_cols=139  Identities=22%  Similarity=0.202  Sum_probs=116.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc----------CCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS----------WANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      .+|+|+||||+||||++++++|+++|++|++++|+........          ...+++++.+|++|++++.++++++|+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  105 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY  105 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence            4689999999999999999999999999999999764311100          025789999999999999999999999


Q ss_pred             EEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhH
Q 029008          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNL  187 (200)
Q Consensus       125 vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E  187 (200)
                      ||||||...      ++...+++|+.++.+++++|.+.++++||++|| ..|+...          .+.+.|+.+|+++|
T Consensus       106 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e  185 (352)
T 1sb8_A          106 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNE  185 (352)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHH
T ss_pred             EEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCCCCCCCChhHHHHHHHH
Confidence            999999643      455678999999999999999999999999999 4565432          35678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      ++++.+
T Consensus       186 ~~~~~~  191 (352)
T 1sb8_A          186 LYADVF  191 (352)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.92  E-value=2.1e-25  Score=173.24  Aligned_cols=138  Identities=20%  Similarity=0.232  Sum_probs=114.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCe-eEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNV-IWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..++|+|+||||+|+||++++++|+++|++|++++|+.++... ....++ +++.+|++  +.+.+++.++|+||||||.
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~-~~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE-LRERGASDIVVANLE--EDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHTTCSEEEECCTT--SCCGGGGTTCSEEEECCCC
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH-HHhCCCceEEEcccH--HHHHHHHcCCCEEEECCCC
Confidence            3468899999999999999999999999999999998655321 112478 99999998  7788889999999999997


Q ss_pred             CC--CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCC---cCCcchhhhHHhhHHHHHhh
Q 029008          132 FG--SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVAN---YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       132 ~~--~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~---~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ..  .++..+++|+.++.++++++++.++++||++||.....+.   .+...|+.+|+++|++++..
T Consensus        95 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~  161 (236)
T 3e8x_A           95 GPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPDQGPMNMRHYLVAKRLADDELKRS  161 (236)
T ss_dssp             CTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGGGSCGGGHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCChhhhhhHHHHHHHHHHHHHHC
Confidence            53  5677889999999999999999999999999995322232   46689999999999999854

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.92  E-value=6.3e-25  Score=173.54  Aligned_cols=134  Identities=18%  Similarity=0.054  Sum_probs=115.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC--
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~--  133 (200)
                      +|+|+||||+|+||++++++|+++|++|++++|+.....    ..+++++.+|++|++.+.++++++|+||||||...  
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~   77 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA----EAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVSVER   77 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC----CTTEEECCCCTTCHHHHHHHHTTCSEEEECCSCCSCC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc----CCCccEEEccCCCHHHHHHHHcCCCEEEECCcCCCCC
Confidence            579999999999999999999999999999999865422    24688999999999999999999999999999742  


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC-----------cCCcchhhhHHhhHHHHHhh
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN-----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~-----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+...+++|+.++.++++++.+.++++||++||. .|+...           .+.+.|+.+|+++|++++.+
T Consensus        78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~  149 (267)
T 3ay3_A           78 PWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLY  149 (267)
T ss_dssp             CHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999999994 454322           24578999999999998864

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.92  E-value=3.4e-24  Score=173.16  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=114.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~ag~  131 (200)
                      ..+++|+||||+||||++++++|+++|++|++++|+... ..    -+++++.+|++|++.+.+++++  +|+||||||.
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----PNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----ceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            467899999999999999999999999999999998654 21    1789999999999999999986  9999999996


Q ss_pred             CC------CCcccchhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCcC------------CcCCcchhhhHHhhHHHHH
Q 029008          132 FG------SNSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGVA------------NYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS-~~~~~~------------~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ..      ++...+++|+.++.+++++|.+. ++++||++|| ..|+..            ..+.+.|+.+|+++|++++
T Consensus        85 ~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~  164 (321)
T 2pk3_A           85 SSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLAR  164 (321)
T ss_dssp             CCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHHHHHHHHH
T ss_pred             cchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence            53      45678899999999999999776 5889999999 456643            2456789999999999998


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      .+
T Consensus       165 ~~  166 (321)
T 2pk3_A          165 QY  166 (321)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.92  E-value=5.5e-24  Score=161.21  Aligned_cols=135  Identities=19%  Similarity=0.176  Sum_probs=114.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~  136 (200)
                      |+|+||||+|+||++++++|+++|++|++++|+.+.... ....+++++.+|++|++++.++++++|+|||++|.... .
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~-~   81 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRND-L   81 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTC-C
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc-ccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCC-C
Confidence            789999999999999999999999999999998654321 22457899999999999999999999999999997543 2


Q ss_pred             ccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCCc---CCcchhhhHHhhHHHHHhh
Q 029008          137 YMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVANY---LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       137 ~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~~---~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...++|+.++.++++++++.++++||++||. .|+....   +...|+.+|.++|+++++.
T Consensus        82 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~  142 (206)
T 1hdo_A           82 SPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRES  142 (206)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHHHHHHHT
T ss_pred             CccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccccccchhHHHHHHHHHHHHHhC
Confidence            3457899999999999999999999999994 4543322   4578999999999999864

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.91  E-value=4.3e-24  Score=173.89  Aligned_cols=139  Identities=23%  Similarity=0.287  Sum_probs=116.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc------CCCCeeEEEccCCCHHHHHHHhc--CCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS------WANNVIWHQGNLLSSDSWKEALD--GVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi  126 (200)
                      ++|+|+||||+||||++++++|+++|++|++++|+........      ...++.++.+|++|+++++++++  ++|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            4579999999999999999999999999999999865532111      13578999999999999999998  899999


Q ss_pred             EccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHH
Q 029008          127 SCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSP  189 (200)
Q Consensus       127 ~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~  189 (200)
                      ||||...      .+...+++|+.++.++++++++.++++||++|| ..|+.+.          .+.+.|+.+|+++|++
T Consensus        84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~  163 (341)
T 3enk_A           84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQI  163 (341)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHHHHHHHHHH
T ss_pred             ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Confidence            9999643      334678999999999999999999999999999 4565432          3457899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++.+
T Consensus       164 ~~~~  167 (341)
T 3enk_A          164 LRDV  167 (341)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.91  E-value=4.8e-24  Score=176.38  Aligned_cols=140  Identities=16%  Similarity=0.108  Sum_probs=116.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccC-CCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+|+|+||||+||||++++++|+++| ++|++++|+.....+... ..+++++.+|++|++.+.++++++|+|||+||.
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~  109 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATY  109 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCCC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCCc
Confidence            356899999999999999999999999 999999998654322221 457999999999999999999999999999996


Q ss_pred             CC------CCcccchhhHHHHHHHHHHHHHc-CCCEEEEEecc-ccCc---------------CC-cCCcchhhhHHhhH
Q 029008          132 FG------SNSYMYKINGTANINAIRAASEK-GVKRFVYISAA-DFGV---------------AN-YLLQGYYEGKDSNL  187 (200)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~-~~~~---------------~~-~~~~~Y~~sK~~~E  187 (200)
                      ..      ++...+++|+.++.+++++|++. ++++||++||. .|+.               +. .+.+.|+.+|+++|
T Consensus       110 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~sK~~~E  189 (377)
T 2q1s_A          110 HGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGE  189 (377)
T ss_dssp             SCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSHHHHHHHHHH
T ss_pred             cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCchHHHHHHHH
Confidence            53      44567899999999999999998 89999999994 4542               11 45678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      ++++.+
T Consensus       190 ~~~~~~  195 (377)
T 2q1s_A          190 FYSVYY  195 (377)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.91  E-value=1.2e-23  Score=171.12  Aligned_cols=137  Identities=23%  Similarity=0.274  Sum_probs=114.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC---C---CcEEEeecCCCCc----cccc-CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDR---G---LTVASLSRSGRSS----LRDS-WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~---g---~~V~~~~r~~~~~----~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      |+|+||||+||||++++++|+++   |   ++|++++|.....    .... ...+++++.+|++|++.+.+++.++|+|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   80 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence            47999999999999999999997   8   9999999865321    1111 1357899999999999999999999999


Q ss_pred             EEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhHH
Q 029008          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNLS  188 (200)
Q Consensus       126 i~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E~  188 (200)
                      |||||...      ++...+++|+.++.+++++|.+.++++||++|| ..||..          ..+.+.|+.+|+++|+
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~  160 (337)
T 1r6d_A           81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDL  160 (337)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Confidence            99999653      456788999999999999999999999999999 456542          2456789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++.+
T Consensus       161 ~~~~~  165 (337)
T 1r6d_A          161 VARAY  165 (337)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.91  E-value=5.1e-24  Score=173.91  Aligned_cols=139  Identities=22%  Similarity=0.274  Sum_probs=115.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC------cccc------cCCCCeeEEEccCCCHHHHHHHhc--
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS------SLRD------SWANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      |+|+|+||||+||||++++++|+++|++|++++|....      ..+.      ....+++++.+|++|++++.++++  
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence            46899999999999999999999999999999986433      1110      013478999999999999999998  


Q ss_pred             CCCEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcC-Ccchhhh
Q 029008          121 GVTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYL-LQGYYEG  182 (200)
Q Consensus       121 ~~d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~-~~~Y~~s  182 (200)
                      ++|+|||+||...      ++...+++|+.++.+++++|++.++++||++|| ..|+..          ..+ .+.|+.+
T Consensus        81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~~Y~~s  160 (348)
T 1ek6_A           81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKS  160 (348)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHH
T ss_pred             CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCCCCCCCchHHH
Confidence            8999999999643      445678999999999999999999999999999 456532          123 6789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |+++|++++.+
T Consensus       161 K~~~e~~~~~~  171 (348)
T 1ek6_A          161 KFFIEEMIRDL  171 (348)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.91  E-value=4.7e-24  Score=173.81  Aligned_cols=138  Identities=20%  Similarity=0.283  Sum_probs=113.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----c-cCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----D-SWANNVIWHQGNLLSSDSWKEALDG--VTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~-~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~  128 (200)
                      ||+|+||||+||||++++++|+++|++|++++|.......    . ....+++++.+|++|++++++++++  +|+||||
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   80 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence            4789999999999999999999999999999985422110    0 1124689999999999999999988  9999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcC--------------------------Cc
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVA--------------------------NY  174 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS-~~~~~~--------------------------~~  174 (200)
                      ||...      ++...+++|+.++.+++++|.+.+++ +||++|| ..|+..                          ..
T Consensus        81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~  160 (347)
T 1orr_A           81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD  160 (347)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred             CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCCC
Confidence            99643      45667899999999999999998885 9999999 455531                          23


Q ss_pred             CCcchhhhHHhhHHHHHhh
Q 029008          175 LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +.+.|+.+|+++|++++.+
T Consensus       161 ~~~~Y~~sK~~~E~~~~~~  179 (347)
T 1orr_A          161 FHSPYGCSKGAADQYMLDY  179 (347)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHH
Confidence            5678999999999999874

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.91  E-value=4.3e-24  Score=174.34  Aligned_cols=140  Identities=16%  Similarity=0.199  Sum_probs=113.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcc-c----ccCCCCeeEEEccCCCHHHHHHHhcC--CCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL-R----DSWANNVIWHQGNLLSSDSWKEALDG--VTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~----~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~  124 (200)
                      ..+|+|+||||+||||++|+++|+++|  ++|++++|...... .    .....+++++.+|++|++.+.+++++  +|+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~  101 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV  101 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence            456899999999999999999999999  67777777653211 1    11125899999999999999999987  999


Q ss_pred             EEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchhhhHHhh
Q 029008          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKDSN  186 (200)
Q Consensus       125 vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------~~~~~Y~~sK~~~  186 (200)
                      |||+||...      .+...+++|+.++.+++++|++.++++||++|| ..|+...           .+.+.|+.+|+++
T Consensus       102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~~~  181 (346)
T 4egb_A          102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASA  181 (346)
T ss_dssp             EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCCSHHHHHHHHH
T ss_pred             EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCCCChhHHHHHHH
Confidence            999999642      456678999999999999999999999999999 4565431           3457899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |++++.+
T Consensus       182 E~~~~~~  188 (346)
T 4egb_A          182 DMIALAY  188 (346)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.91  E-value=1.1e-23  Score=171.86  Aligned_cols=137  Identities=17%  Similarity=0.199  Sum_probs=114.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC--CCcEEEeecCCCCcc----cccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ||+|+||||+||||++++++|+++  |++|++++|......    ......+++++.+|++|++.+.++++++|+|||||
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A   83 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYA   83 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECC
Confidence            579999999999999999999999  899999999753211    11113578999999999999999999999999999


Q ss_pred             ccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------------------CcCCcchh
Q 029008          130 GGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------------------NYLLQGYY  180 (200)
Q Consensus       130 g~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------------------~~~~~~Y~  180 (200)
                      |...      ++...+++|+.++.+++++|.+.++ +||++|| ..||..                      ..+.+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~Y~  162 (348)
T 1oc2_A           84 AESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS  162 (348)
T ss_dssp             SCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHH
T ss_pred             cccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCCCCCCCccH
Confidence            9653      4567889999999999999999888 9999999 456532                      23567899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .+|+++|++++.+
T Consensus       163 ~sK~~~e~~~~~~  175 (348)
T 1oc2_A          163 STKAASDLIVKAW  175 (348)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.91  E-value=6.5e-24  Score=173.00  Aligned_cols=139  Identities=15%  Similarity=0.140  Sum_probs=116.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-------CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-CCCEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-------LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-GVTAV  125 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~v  125 (200)
                      .++|+|+||||+||||++++++|+++|       ++|++++|+...... ....+++++.+|++|++.++++++ ++|+|
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~v   90 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-GFSGAVDARAADLSAPGEAEKLVEARPDVI   90 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-TCCSEEEEEECCTTSTTHHHHHHHTCCSEE
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-ccCCceeEEEcCCCCHHHHHHHHhcCCCEE
Confidence            356799999999999999999999999       899999998654221 123578899999999999999984 89999


Q ss_pred             EEccccCC-----CCcccchhhHHHHHHHHHHHHHcC-----CCEEEEEec-cccCcCCc----------CCcchhhhHH
Q 029008          126 ISCVGGFG-----SNSYMYKINGTANINAIRAASEKG-----VKRFVYISA-ADFGVANY----------LLQGYYEGKD  184 (200)
Q Consensus       126 i~~ag~~~-----~~~~~~~~n~~~~~~~~~~a~~~~-----~~~~v~vSS-~~~~~~~~----------~~~~Y~~sK~  184 (200)
                      |||||...     ++...+++|+.++.+++++|.+.+     +++||++|| ..|+....          +.+.|+.+|+
T Consensus        91 ih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~  170 (342)
T 2hrz_A           91 FHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKA  170 (342)
T ss_dssp             EECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCCCCSSHHHHHHH
T ss_pred             EECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCCCCcchHHHHHH
Confidence            99999643     456678999999999999998876     789999999 45665322          6678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      ++|++++++
T Consensus       171 ~~e~~~~~~  179 (342)
T 2hrz_A          171 ICELLLSDY  179 (342)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.91  E-value=3e-24  Score=172.78  Aligned_cols=134  Identities=20%  Similarity=0.315  Sum_probs=113.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC---
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG---  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~---  133 (200)
                      |+|+||||+||||++++++|+++|++|++++|....... ....+++++.+|+.|++ +.+++++ |+|||+||...   
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~~~~   77 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-FVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPEVRL   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGG-GSCTTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCSSSG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchh-hcCCCceEEECccccHH-HHhhcCC-CEEEECCCCCCchh
Confidence            589999999999999999999999999999998665332 22468899999999999 8888888 99999999532   


Q ss_pred             ---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhh
Q 029008          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                         .+...+++|+.++.+++++|++.++++||++|| ..|+...          .+.+.|+.+|+++|++++.+
T Consensus        78 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~  151 (312)
T 3ko8_A           78 STTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATY  151 (312)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence               345678999999999999999999999999999 4565432          35688999999999999875

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.2e-23  Score=170.92  Aligned_cols=138  Identities=22%  Similarity=0.264  Sum_probs=114.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCC-ccc---cc-CCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRS-SLR---DS-WANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~-~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      +|+|+||||+||||++++++|+++|  ++|++++|.... ..+   .. ...+++++.+|++|++.+++++.++|+||||
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            3689999999999999999999997  899999987521 111   11 1347899999999999999999999999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCC-CEEEEEecc-ccCcC----------CcCCcchhhhHHhhHHHH
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGV-KRFVYISAA-DFGVA----------NYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~-~~~v~vSS~-~~~~~----------~~~~~~Y~~sK~~~E~~~  190 (200)
                      ||...      ++...+++|+.++.+++++|.+.+. ++||++||. .||..          ..+.+.|+.+|+++|+++
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~  162 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLV  162 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCCCccHHHHHHHHHHH
Confidence            99753      4567889999999999999998875 699999994 56542          345678999999999999


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +++
T Consensus       163 ~~~  165 (336)
T 2hun_A          163 LGW  165 (336)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.91  E-value=3.6e-24  Score=166.58  Aligned_cols=135  Identities=18%  Similarity=0.217  Sum_probs=114.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ++|+|+||||+|+||++++++|+++|+  +|++++|+.+.... ....++.++.+|++|+++++++++++|+||||||..
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-EAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-GGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccc-cccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            357999999999999999999999999  99999998765322 112468899999999999999999999999999964


Q ss_pred             C---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          133 G---SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .   .++..+++|+.++.++++++++.++++||++||. .|+   .+...|+.+|+++|++++..
T Consensus        96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~---~~~~~Y~~sK~~~e~~~~~~  157 (242)
T 2bka_A           96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK---SSNFLYLQVKGEVEAKVEEL  157 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT---TCSSHHHHHHHHHHHHHHTT
T ss_pred             cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCC---CCcchHHHHHHHHHHHHHhc
Confidence            3   3456789999999999999999999999999995 343   34578999999999999875

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.91  E-value=7.1e-24  Score=172.21  Aligned_cols=142  Identities=18%  Similarity=0.157  Sum_probs=113.9

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc----ccc-CCCCeeEEEccCCCHHHHHHHhcC--CCE
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDS-WANNVIWHQGNLLSSDSWKEALDG--VTA  124 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~-~~~~~~~~~~Dl~d~~~~~~~~~~--~d~  124 (200)
                      ++.++++||||||+||||++++++|+++|++|++++|+.....    ... ...+++++.+|++|++++.+++++  +|+
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   89 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQE   89 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCE
Confidence            3456789999999999999999999999999999999865421    011 124789999999999999999985  699


Q ss_pred             EEEccccCC------CCcccchhhHHHHHHHHHHHHHcCC-CEEEEEec-cccCcCC----------cCCcchhhhHHhh
Q 029008          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGV-KRFVYISA-ADFGVAN----------YLLQGYYEGKDSN  186 (200)
Q Consensus       125 vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~-~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~  186 (200)
                      ||||||...      ++...+++|+.++.+++++|.+.++ ++||++|| ..|+...          .+.+.|+.+|+++
T Consensus        90 Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~  169 (335)
T 1rpn_A           90 VYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYG  169 (335)
T ss_dssp             EEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHH
T ss_pred             EEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChhHHHHHHH
Confidence            999999643      4456789999999999999999886 89999999 4565422          2456899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |++++.+
T Consensus       170 e~~~~~~  176 (335)
T 1rpn_A          170 HWITVNY  176 (335)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.91  E-value=7.7e-24  Score=172.26  Aligned_cols=138  Identities=15%  Similarity=0.133  Sum_probs=114.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----cc-CCCCeeEEEccCCCHHHHHHHhcC--CCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DS-WANNVIWHQGNLLSSDSWKEALDG--VTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~-~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~  128 (200)
                      +|+|+||||+||||++++++|+++|++|++++|+......    .. ...+++++.+|++|++++.+++++  +|+||||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   82 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNL   82 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence            5799999999999999999999999999999998654211    11 124789999999999999999985  6999999


Q ss_pred             cccC------CCCcccchhhHHHHHHHHHHHHHcCC-CEEEEEec-cccCc----------CCcCCcchhhhHHhhHHHH
Q 029008          129 VGGF------GSNSYMYKINGTANINAIRAASEKGV-KRFVYISA-ADFGV----------ANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       129 ag~~------~~~~~~~~~n~~~~~~~~~~a~~~~~-~~~v~vSS-~~~~~----------~~~~~~~Y~~sK~~~E~~~  190 (200)
                      ||..      .++...+++|+.++.+++++|.+.++ ++||++|| ..||.          +..+.+.|+.+|+++|+++
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~  162 (345)
T 2z1m_A           83 AAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWIT  162 (345)
T ss_dssp             CCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCCCCCChhHHHHHHHHHHH
Confidence            9964      24567789999999999999998886 89999999 45653          2245678999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +.+
T Consensus       163 ~~~  165 (345)
T 2z1m_A          163 VNY  165 (345)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.91  E-value=3.5e-24  Score=172.27  Aligned_cols=136  Identities=15%  Similarity=0.158  Sum_probs=114.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC--CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag  130 (200)
                      |+|+|+||||+||||++++++|+++  |++|++++|+......   ..+++++.+|++|++++.++++  ++|+|||+||
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~   77 (312)
T 2yy7_A            1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV---VNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAA   77 (312)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHH---HHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccc---cCCCceEEecCCCHHHHHHHHhhcCCCEEEECCc
Confidence            3578999999999999999999999  8999999997654211   1357899999999999999998  8999999998


Q ss_pred             cCC-----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchhhhHHhhHHHHHhh
Q 029008          131 GFG-----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~-----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...     ++...+++|+.++.+++++|++.++++||++|| ..|+...           .+.+.|+.+|+++|++++.+
T Consensus        78 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~  157 (312)
T 2yy7_A           78 LLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYY  157 (312)
T ss_dssp             CCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHHHHHHHHH
T ss_pred             cCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHHHHHHHHH
Confidence            642     445678999999999999999999999999999 4565421           34678999999999999864

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.91  E-value=6.5e-24  Score=171.15  Aligned_cols=135  Identities=19%  Similarity=0.271  Sum_probs=109.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC---
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF---  132 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~---  132 (200)
                      ||+|+||||+||||++++++|+++| .++++++....... ....+++++.+|++| +++.++++++|+|||+|+..   
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~-~~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~~~~   77 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEE-FVNEAARLVKADLAA-DDIKDYLKGAEEVWHIAANPDVR   77 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGG-GSCTTEEEECCCTTT-SCCHHHHTTCSEEEECCCCCCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChh-hcCCCcEEEECcCCh-HHHHHHhcCCCEEEECCCCCChh
Confidence            5789999999999999999999999 55555554433222 224679999999999 89999999999999999853   


Q ss_pred             ---CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc----------CCcCCcchhhhHHhhHHHHHhh
Q 029008          133 ---GSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV----------ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ---~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~----------~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                         .++...+++|+.++.++++++++.++++||++|| ..|+.          +..+.+.|+.+|+++|++++.+
T Consensus        78 ~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~  152 (313)
T 3ehe_A           78 IGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESY  152 (313)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             hhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence               2446678999999999999999999999999999 45653          2345678999999999999875

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.91  E-value=8e-24  Score=173.53  Aligned_cols=139  Identities=17%  Similarity=0.143  Sum_probs=115.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDG--VTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~  128 (200)
                      .+|+|+||||+||||++++++|+++|++|++++|+.......    ....+++++.+|++|++.+.+++++  +|+||||
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   87 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   87 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence            457999999999999999999999999999999986543211    0135789999999999999999986  8999999


Q ss_pred             cccC------CCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEec-cccCcC-----------CcCCcchhhhHHhhHHH
Q 029008          129 VGGF------GSNSYMYKINGTANINAIRAASEKG-VKRFVYISA-ADFGVA-----------NYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       129 ag~~------~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS-~~~~~~-----------~~~~~~Y~~sK~~~E~~  189 (200)
                      ||..      ..+...+++|+.++.+++++|.+.+ +++||++|| ..|+..           ..+.+.|+.+|+++|++
T Consensus        88 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~  167 (357)
T 1rkx_A           88 AAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELV  167 (357)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHHHH
T ss_pred             CCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCccHHHHHHHHHH
Confidence            9953      2445678999999999999999886 889999999 455532           23567899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++.+
T Consensus       168 ~~~~  171 (357)
T 1rkx_A          168 TSSY  171 (357)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.91  E-value=4e-24  Score=170.42  Aligned_cols=131  Identities=17%  Similarity=0.158  Sum_probs=110.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC-CCEEEEccccCC-
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG-VTAVISCVGGFG-  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~d~vi~~ag~~~-  133 (200)
                      +|+|+||| +||||++|+++|+++|++|++++|+.+..     ..+++++.+|++|++.+.+++++ +|+|||+||... 
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~   76 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASEY   76 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHHH
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCCC
Confidence            57999999 59999999999999999999999986552     36889999999999999999987 999999998643 


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhh
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+...+++|+.++.+++++|++.++++|||+|| ..|+...          .+.+.|+.+|+++|++ +++
T Consensus        77 ~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~~  146 (286)
T 3gpi_A           77 SDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEAL-LAA  146 (286)
T ss_dssp             C-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHHHHHHHHHH-GGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhHHHHHHHHH-Hhc
Confidence            556788999999999999999999999999999 4566432          3467899999999999 665

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.91  E-value=1.9e-23  Score=173.48  Aligned_cols=138  Identities=20%  Similarity=0.262  Sum_probs=114.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHH-HCCCcEEEeecCCCCc--------cccc-------C----CCC---eeEEEccCCCH
Q 029008           56 SEKLLVLGGNGFVGSHICREAL-DRGLTVASLSRSGRSS--------LRDS-------W----ANN---VIWHQGNLLSS  112 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~-~~g~~V~~~~r~~~~~--------~~~~-------~----~~~---~~~~~~Dl~d~  112 (200)
                      +|+|+||||+||||++++++|+ ++|++|++++|.....        .+..       .    ..+   ++++.+|++|+
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            3589999999999999999999 9999999999875442        1110       0    124   89999999999


Q ss_pred             HHHHHHhc--C-CCEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------
Q 029008          113 DSWKEALD--G-VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------  173 (200)
Q Consensus       113 ~~~~~~~~--~-~d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~---------  173 (200)
                      +.+.++++  + +|+||||||...      ++...+++|+.++.+++++|++.++++||++|| ..|+...         
T Consensus        82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~  161 (397)
T 1gy8_A           82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE  161 (397)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCccccccccc
Confidence            99999987  6 999999999653      345688999999999999999999999999999 4565433         


Q ss_pred             --------cCCcchhhhHHhhHHHHHhh
Q 029008          174 --------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 --------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                              .+.+.|+.+|+++|++++.+
T Consensus       162 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~  189 (397)
T 1gy8_A          162 PIDINAKKSPESPYGESKLIAERMIRDC  189 (397)
T ss_dssp             CBCTTSCCBCSSHHHHHHHHHHHHHHHH
T ss_pred             CcCccCCCCCCCchHHHHHHHHHHHHHH
Confidence                    24678999999999999874

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.91  E-value=8.7e-24  Score=173.18  Aligned_cols=137  Identities=18%  Similarity=0.205  Sum_probs=116.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHC-CC-cEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDR-GL-TVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ..+|+|+||||+|+||++++++|+++ |+ +|++++|+..+...   .....++.++.+|++|++.+.++++++|+|||+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~   98 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA   98 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence            35689999999999999999999999 97 99999997543211   111357999999999999999999999999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||...      .+...+++|+.++.+++++|.+.++++||++||..   ...|.+.|+.+|+++|++++.+
T Consensus        99 Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~---~~~p~~~Y~~sK~~~E~~~~~~  166 (344)
T 2gn4_A           99 AALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDK---AANPINLYGATKLCSDKLFVSA  166 (344)
T ss_dssp             CCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGG---GSSCCSHHHHHHHHHHHHHHHG
T ss_pred             CCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCc---cCCCccHHHHHHHHHHHHHHHH
Confidence            99643      34567899999999999999999999999999942   2345689999999999999875

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.90  E-value=2.3e-24  Score=175.17  Aligned_cols=140  Identities=24%  Similarity=0.313  Sum_probs=114.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--c----cCCCCeeEE-EccCCCHHHHHHHhcCCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--D----SWANNVIWH-QGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~----~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      .++++|+||||+||||++++++|+++|++|++++|+......  .    ....+++++ .+|++|++.++++++++|+||
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            467899999999999999999999999999999997543110  0    012578888 899999999999999999999


Q ss_pred             EccccCC---CCcccchhhHHHHHHHHHHHHH-cCCCEEEEEecc-ccCcCC----------------------------
Q 029008          127 SCVGGFG---SNSYMYKINGTANINAIRAASE-KGVKRFVYISAA-DFGVAN----------------------------  173 (200)
Q Consensus       127 ~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~-~~~~~~v~vSS~-~~~~~~----------------------------  173 (200)
                      ||||...   ++...+++|+.++.+++++|.+ .++++||++||. .|+.+.                            
T Consensus        89 h~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~  168 (342)
T 1y1p_A           89 HIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESD  168 (342)
T ss_dssp             ECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTS
T ss_pred             EeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhccccccc
Confidence            9999753   4566789999999999999984 578999999994 553221                            


Q ss_pred             --cCCcchhhhHHhhHHHHHhh
Q 029008          174 --YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 --~~~~~Y~~sK~~~E~~~~~~  193 (200)
                        .+.+.|+.+|+++|++++.+
T Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~  190 (342)
T 1y1p_A          169 PQKSLWVYAASKTEAELAAWKF  190 (342)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHH
Confidence              13468999999999999875

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.90  E-value=2e-23  Score=168.08  Aligned_cols=136  Identities=24%  Similarity=0.335  Sum_probs=112.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~-  133 (200)
                      |+|+||||+||||++++++|+++|++|++++|........ ...+++++.+|++|+++++++++  ++|+|||+|+... 
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~   79 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKREN-VPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASV   79 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGG-SCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhh-cccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCc
Confidence            4799999999999999999999999999999854332221 12468899999999999999998  8999999998643 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc--ccCc-C----------CcCCcchhhhHHhhHHHHHhh
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISAA--DFGV-A----------NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~--~~~~-~----------~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                           ++...+++|+.++.+++++|.+.++++||++||.  .|+. .          ..+.+.|+.+|+++|++++.+
T Consensus        80 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~  157 (311)
T 2p5y_A           80 KVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVY  157 (311)
T ss_dssp             HHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence                 3556789999999999999999999999999995  3553 1          124678999999999999864

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.90  E-value=1.3e-23  Score=173.71  Aligned_cols=139  Identities=17%  Similarity=0.184  Sum_probs=113.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc----ccccC------CC-CeeEEEccCCCHHHHHHHhcC--
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDSW------AN-NVIWHQGNLLSSDSWKEALDG--  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~------~~-~~~~~~~Dl~d~~~~~~~~~~--  121 (200)
                      |+++|+||||+||||++++++|+++|++|++++|+....    .....      .. +++++.+|++|++.+.+++++  
T Consensus        27 M~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           27 PRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             hCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            347999999999999999999999999999999986541    11110      12 788999999999999999885  


Q ss_pred             CCEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCC-----EEEEEec-cccCcC---------CcCCcchh
Q 029008          122 VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVK-----RFVYISA-ADFGVA---------NYLLQGYY  180 (200)
Q Consensus       122 ~d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~-----~~v~vSS-~~~~~~---------~~~~~~Y~  180 (200)
                      +|+||||||...      ++...+++|+.++.+++++|.+.+++     +||++|| ..|+..         ..+.+.|+
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~~~~~~~Y~  186 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYA  186 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCSHHH
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCCCCCCCCCCCCchH
Confidence            699999999643      45567899999999999999887755     9999999 456642         34567899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .+|+++|.+++.+
T Consensus       187 ~sK~~~E~~~~~~  199 (381)
T 1n7h_A          187 ASKCAAHWYTVNY  199 (381)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=3.2e-23  Score=171.07  Aligned_cols=139  Identities=19%  Similarity=0.221  Sum_probs=113.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc----cccc-------CCCCeeEEEccCCCHHHHHHHhcC--
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDS-------WANNVIWHQGNLLSSDSWKEALDG--  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~--  121 (200)
                      |+++|+||||+||||++++++|+++|++|++++|+....    ....       ...+++++.+|++|++++.+++++  
T Consensus        23 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           23 MRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cCcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            347999999999999999999999999999999986531    1111       124788999999999999999885  


Q ss_pred             CCEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCC---CEEEEEec-cccCcC----------CcCCcchhh
Q 029008          122 VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGV---KRFVYISA-ADFGVA----------NYLLQGYYE  181 (200)
Q Consensus       122 ~d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~---~~~v~vSS-~~~~~~----------~~~~~~Y~~  181 (200)
                      +|+||||||...      ++...+++|+.++.+++++|.+.++   ++||++|| ..|+..          ..+.+.|+.
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~  182 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGA  182 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHH
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCCCCCChhHH
Confidence            699999999643      3456789999999999999999887   79999999 456532          235678999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|+++|.+++.+
T Consensus       183 sK~~~e~~~~~~  194 (375)
T 1t2a_A          183 AKLYAYWIVVNF  194 (375)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.90  E-value=3.1e-23  Score=168.79  Aligned_cols=136  Identities=19%  Similarity=0.223  Sum_probs=111.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCC-HHHHHHHhcCCCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEALDGVTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~d~vi~~ag~~~-  133 (200)
                      |+|+||||+||||++++++|+++ |++|++++|+...........+++++.+|++| .+.++++++++|+|||+||... 
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~~~~   80 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATP   80 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcccccCc
Confidence            58999999999999999999998 89999999986543222224579999999998 4678889999999999998643 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchhhhHHhhHHHH
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------------~~~~~Y~~sK~~~E~~~  190 (200)
                           ++...+++|+.++.+++++|.+.+ ++||++|| ..|+...                 .+.+.|+.+|+++|+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e~~~  159 (345)
T 2bll_A           81 IEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVI  159 (345)
T ss_dssp             HHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             cchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHHHHHH
Confidence                 345678999999999999999988 89999999 4455321                 12347999999999999


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +.+
T Consensus       160 ~~~  162 (345)
T 2bll_A          160 WAY  162 (345)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.90  E-value=1.1e-23  Score=171.50  Aligned_cols=140  Identities=19%  Similarity=0.210  Sum_probs=108.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----c-cCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----D-SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      .++|+||||||+||||++|+++|+++|++|+++.|+.+....     . ....+++++.+|++|++.+.++++++|+|||
T Consensus         7 ~~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih   86 (338)
T 2rh8_A            7 IGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFH   86 (338)
T ss_dssp             --CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEE
Confidence            357899999999999999999999999999999987553211     0 1124688999999999999999999999999


Q ss_pred             ccccCC----CC-cccchhhHHHHHHHHHHHHHcC-CCEEEEEeccc--cCcCC---------c---------C----Cc
Q 029008          128 CVGGFG----SN-SYMYKINGTANINAIRAASEKG-VKRFVYISAAD--FGVAN---------Y---------L----LQ  177 (200)
Q Consensus       128 ~ag~~~----~~-~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~--~~~~~---------~---------~----~~  177 (200)
                      +|+...    ++ ...+++|+.++.+++++|.+.+ +++|||+||..  |+.+.         .         +    ..
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  166 (338)
T 2rh8_A           87 VATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTW  166 (338)
T ss_dssp             ESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCCC
T ss_pred             eCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCccc
Confidence            998642    12 2378999999999999999986 89999999943  21100         0         1    12


Q ss_pred             chhhhHHhhHHHHHhh
Q 029008          178 GYYEGKDSNLSPLLAC  193 (200)
Q Consensus       178 ~Y~~sK~~~E~~~~~~  193 (200)
                      .|+.||.++|++++.+
T Consensus       167 ~Y~~sK~~~E~~~~~~  182 (338)
T 2rh8_A          167 GYPASKTLAEKAAWKF  182 (338)
T ss_dssp             CCTTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            5999999999988764

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.90  E-value=7e-23  Score=167.93  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=113.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCC-cccc---c-CCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRS-SLRD---S-WANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~-~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      |+|+||||+||||++++++|+++ |++|++++|.... ..+.   . ...+++++.+|++|++.+.++++  ++|+||||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence            47999999999999999999998 7999999987521 1111   1 13478999999999999999998  89999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHc--CCC-------EEEEEecc-ccCcC--------------------
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEK--GVK-------RFVYISAA-DFGVA--------------------  172 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~--~~~-------~~v~vSS~-~~~~~--------------------  172 (200)
                      ||...      ++...+++|+.++.+++++|.+.  +++       +||++||. .||..                    
T Consensus        81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~~~  160 (361)
T 1kew_A           81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA  160 (361)
T ss_dssp             CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCCCC
Confidence            99653      45678899999999999999988  877       99999994 46532                    


Q ss_pred             CcCCcchhhhHHhhHHHHHhh
Q 029008          173 NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ..+.+.|+.+|+++|++++.+
T Consensus       161 ~~~~~~Y~~sK~~~e~~~~~~  181 (361)
T 1kew_A          161 YAPSSPYSASKASSDHLVRAW  181 (361)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHH
Confidence            235678999999999999874

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.90  E-value=3.2e-23  Score=167.16  Aligned_cols=130  Identities=18%  Similarity=0.208  Sum_probs=111.1

Q ss_pred             eEEEEccCchhHHHHHHHHHHC--CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC
Q 029008           58 KLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~  133 (200)
                      +|+||||+||||++++++|+++  |++|++++|+....      .++.++.+|++|++++.++++  ++|+|||+||...
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~------~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~   74 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT------GGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILS   74 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC------TTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCH
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc------cCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccC
Confidence            5899999999999999999999  89999999875442      157889999999999999998  8999999998642


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchhhhHHhhHHHHHhh
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                           .+...+++|+.++.+++++|++.++++||++|| ..|+...           .+.+.|+.+|+++|++++.+
T Consensus        75 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~  151 (317)
T 3ajr_A           75 AKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYY  151 (317)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHHHHHHH
Confidence                 445678999999999999999999999999999 4565421           24678999999999998764

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.90  E-value=4.5e-23  Score=167.77  Aligned_cols=137  Identities=23%  Similarity=0.296  Sum_probs=110.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc------cCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      |+|+||||+||||++++++|+++|++|++++|........      ....++.++.+|++|++.+.++++  ++|+||||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~   80 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF   80 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence            4799999999999999999999999999998754321110      012467899999999999999887  59999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------C-cCCcchhhhHHhhHHHH
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------N-YLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~-~~~~~Y~~sK~~~E~~~  190 (200)
                      ||...      .+...+++|+.++.++++++++.++++||++|| ..|+..          . ++.+.|+.+|+++|+++
T Consensus        81 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~  160 (338)
T 1udb_A           81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL  160 (338)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHHHH
T ss_pred             CccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHHHHH
Confidence            98642      345678999999999999999989999999999 456532          1 12678999999999999


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +.+
T Consensus       161 ~~~  163 (338)
T 1udb_A          161 TDL  163 (338)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.90  E-value=1.1e-23  Score=169.72  Aligned_cols=129  Identities=19%  Similarity=0.244  Sum_probs=87.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~ag~~  132 (200)
                      |+|+|+||||+|+||++++++|+++|++|++++|+...       .+  ++.+|++|++.+.+++++  +|+||||||..
T Consensus         1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   71 (315)
T 2ydy_A            1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHCAAER   71 (315)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---------------------------CHHHHHHHCCSEEEECC---
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-------CC--eEEecCCCHHHHHHHHHhhCCCEEEECCccc
Confidence            35799999999999999999999999999999986543       12  788999999999998875  89999999964


Q ss_pred             C------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC---------CcCCcchhhhHHhhHHHHHhh
Q 029008          133 G------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA---------NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~---------~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .      ++...+++|+.++.+++++|.+.++ +||++|| ..|+..         ..+.+.|+.+|+++|++++.+
T Consensus        72 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~  147 (315)
T 2ydy_A           72 RPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLEN  147 (315)
T ss_dssp             ----------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCSSSCSBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence            2      4567889999999999999998887 9999999 455541         245678999999999999986

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.90  E-value=3.9e-23  Score=168.18  Aligned_cols=139  Identities=22%  Similarity=0.289  Sum_probs=110.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--c---ccC--CCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--R---DSW--ANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~---~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ++++||||||+||||++++++|+++|++|++++|+.+...  .   ...  ..+++++.+|++|++++.++++++|+|||
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   83 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFH   83 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence            5689999999999999999999999999999998765311  0   011  12588999999999999999999999999


Q ss_pred             ccccCCCC-----cccchhhHHHHHHHHHHHHHcC-CCEEEEEeccc--cCcCC--------------------cCCcch
Q 029008          128 CVGGFGSN-----SYMYKINGTANINAIRAASEKG-VKRFVYISAAD--FGVAN--------------------YLLQGY  179 (200)
Q Consensus       128 ~ag~~~~~-----~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~--~~~~~--------------------~~~~~Y  179 (200)
                      +|+.....     ...+++|+.++.+++++|.+.+ +++||++||..  |+.+.                    .+...|
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y  163 (337)
T 2c29_D           84 VATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMY  163 (337)
T ss_dssp             CCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHH
T ss_pred             eccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCccchH
Confidence            99864311     2478999999999999999887 89999999953  33211                    123469


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.||.++|++++.+
T Consensus       164 ~~sK~~~E~~~~~~  177 (337)
T 2c29_D          164 FVSKTLAEQAAWKY  177 (337)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.90  E-value=4.2e-23  Score=160.92  Aligned_cols=137  Identities=19%  Similarity=0.216  Sum_probs=110.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC--CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ++|+|+||||+|+||++++++|+++  |++|++++|+.++...  ...+++++.+|++|++++.++++++|+||||+|..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~   80 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK--IGGEADVFIGDITDADSINPAFQGIDALVILTSAV   80 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH--TTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh--cCCCeeEEEecCCCHHHHHHHHcCCCEEEEecccc
Confidence            4689999999999999999999999  8999999997543211  13578899999999999999999999999999864


Q ss_pred             CC------------C-------cccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCc-----chhhhHHhhHH
Q 029008          133 GS------------N-------SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQ-----GYYEGKDSNLS  188 (200)
Q Consensus       133 ~~------------~-------~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~-----~Y~~sK~~~E~  188 (200)
                      ..            +       ...+++|+.++.++++++++.++++||++||.....+..+..     .|..+|+++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~y~~sK~~~e~  160 (253)
T 1xq6_A           81 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQ  160 (253)
T ss_dssp             CEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCGGGGGGGCCHHHHHHHHHH
T ss_pred             ccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCCCccccccchhHHHHHHHHHH
Confidence            21            1       134689999999999999999999999999954222223333     46669999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      ++++.
T Consensus       161 ~~~~~  165 (253)
T 1xq6_A          161 YLADS  165 (253)
T ss_dssp             HHHTS
T ss_pred             HHHhC
Confidence            99863

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.89  E-value=3e-23  Score=165.59  Aligned_cols=124  Identities=21%  Similarity=0.210  Sum_probs=106.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~  131 (200)
                      ...++|+||||+||||++++++|+++|++|++++|+                .+|++|++.+.++++  ++|+||||||.
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------~~Dl~d~~~~~~~~~~~~~d~vih~A~~   73 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ----------------DLDITNVLAVNKFFNEKKPNVVINCAAH   73 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT----------------TCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc----------------cCCCCCHHHHHHHHHhcCCCEEEECCcc
Confidence            345799999999999999999999999999999986                269999999999998  79999999996


Q ss_pred             CC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhhc
Q 029008          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                      ..      ++...+++|+.++.+++++|.+.++ +||++|| ..|+...          .+.+.|+.+|+++|++++++.
T Consensus        74 ~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~  152 (292)
T 1vl0_A           74 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALN  152 (292)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhC
Confidence            43      4566789999999999999999888 9999999 4565432          246789999999999999863

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.89  E-value=6.7e-23  Score=168.67  Aligned_cols=138  Identities=20%  Similarity=0.207  Sum_probs=109.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc----cccc------CCCCeeEEEccCCCHHHHHHHhcC--CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDS------WANNVIWHQGNLLSSDSWKEALDG--VT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~--~d  123 (200)
                      ||+|+||||+||||++++++|+++|++|++++|+....    ....      ...+++++.+|++|++++.+++++  +|
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence            57899999999999999999999999999999975431    1111      124788999999999999999885  79


Q ss_pred             EEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCC---CEEEEEec-cccCcC----------CcCCcchhhhH
Q 029008          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGV---KRFVYISA-ADFGVA----------NYLLQGYYEGK  183 (200)
Q Consensus       124 ~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~---~~~v~vSS-~~~~~~----------~~~~~~Y~~sK  183 (200)
                      +||||||...      ++...+++|+.++.++++++.+.++   ++||++|| ..|+..          ..+.+.|+.+|
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~~~Y~~sK  160 (372)
T 1db3_A           81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK  160 (372)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred             EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCCChHHHHH
Confidence            9999999643      2345678999999999999999887   79999999 456542          13467899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      +++|++++.+
T Consensus       161 ~~~e~~~~~~  170 (372)
T 1db3_A          161 LYAYWITVNY  170 (372)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.89  E-value=4e-23  Score=164.44  Aligned_cols=139  Identities=15%  Similarity=0.106  Sum_probs=112.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ++|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+|
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            56899999999999999999999999999999998654221  1224579999999999999988776       68999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~~----a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |||||...          .++..+++|+.+++.+.++    +++.+.++||++||...-.+.++...|+.||+++|.+++
T Consensus        84 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~  163 (281)
T 3m1a_A           84 VNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSE  163 (281)
T ss_dssp             EECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCCCchHHHHHHHHHHHHHH
Confidence            99999532          2345789999996655554    466677899999996544556677899999999999988


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       164 ~l  165 (281)
T 3m1a_A          164 GL  165 (281)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.89  E-value=2.6e-23  Score=172.85  Aligned_cols=140  Identities=14%  Similarity=0.181  Sum_probs=111.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-------------------c---ccCCCCeeEEEccCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-------------------R---DSWANNVIWHQGNLLS  111 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------------------~---~~~~~~~~~~~~Dl~d  111 (200)
                      ..+++||||||+||||++++++|+++|++|++++|......                   .   .....+++++.+|++|
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d   88 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD   88 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence            46789999999999999999999999999999987532110                   0   0013578999999999


Q ss_pred             HHHHHHHhcC--CCEEEEccccCCC------C---cccchhhHHHHHHHHHHHHHcCC-CEEEEEecc-ccCc-------
Q 029008          112 SDSWKEALDG--VTAVISCVGGFGS------N---SYMYKINGTANINAIRAASEKGV-KRFVYISAA-DFGV-------  171 (200)
Q Consensus       112 ~~~~~~~~~~--~d~vi~~ag~~~~------~---~~~~~~n~~~~~~~~~~a~~~~~-~~~v~vSS~-~~~~-------  171 (200)
                      ++.+.+++++  +|+||||||....      +   ...+++|+.++.+++++|.+.++ ++||++||. .|+.       
T Consensus        89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~E  168 (404)
T 1i24_A           89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEE  168 (404)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCS
T ss_pred             HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCCCCCCc
Confidence            9999999987  9999999996431      1   13678999999999999999887 599999994 5653       


Q ss_pred             ----------------CCcCCcchhhhHHhhHHHHHhh
Q 029008          172 ----------------ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 ----------------~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                      +..+.+.|+.+|+++|++++.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~  206 (404)
T 1i24_A          169 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFT  206 (404)
T ss_dssp             SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCCCChhHHHHHHHHHHHHHH
Confidence                            2234678999999999998864

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.89  E-value=3.3e-23  Score=163.60  Aligned_cols=142  Identities=18%  Similarity=0.131  Sum_probs=112.2

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      +...+|+++||||+|+||.+++++|+++|++|++++|+.+...+.....++.++.+|++|+++++++++       ++|+
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            335678999999999999999999999999999999987653222222358899999999999988775       6899


Q ss_pred             EEEccccCC---------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          125 VISCVGGFG---------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       125 vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      +|||||...         .++..+++|+.+++++.+++.    +.+.++||++||...-.+.++...|+.+|++++.+.+
T Consensus       103 lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~  182 (260)
T 3gem_A          103 VVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTL  182 (260)
T ss_dssp             EEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCSSCHHHHHHHHHHHHHHH
T ss_pred             EEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCcHhHHHHHHHHHHHHH
Confidence            999999643         234578999999999988874    3456799999996444455667899999999999988


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       183 ~l  184 (260)
T 3gem_A          183 SF  184 (260)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.89  E-value=8.8e-23  Score=164.78  Aligned_cols=138  Identities=20%  Similarity=0.341  Sum_probs=107.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeec-CCCC--ccc---ccC--CCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSR-SGRS--SLR---DSW--ANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r-~~~~--~~~---~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      +|+|+||||+||||++++++|+++|++|++++| +.+.  ...   ...  ..+++++.+|++|+++++++++++|+|||
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            478999999999999999999999999999988 5422  110   000  12578899999999999999999999999


Q ss_pred             ccccCC----C-CcccchhhHHHHHHHHHHHHHc-CCCEEEEEeccc--cCcCCc-------------------CCc-ch
Q 029008          128 CVGGFG----S-NSYMYKINGTANINAIRAASEK-GVKRFVYISAAD--FGVANY-------------------LLQ-GY  179 (200)
Q Consensus       128 ~ag~~~----~-~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~~--~~~~~~-------------------~~~-~Y  179 (200)
                      +|+...    + +...+++|+.++.+++++|.+. ++++||++||..  ++.+..                   +.. .|
T Consensus        81 ~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~Y  160 (322)
T 2p4h_X           81 TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNY  160 (322)
T ss_dssp             CCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHH
T ss_pred             cCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCcccccH
Confidence            998542    1 2347899999999999999988 789999999953  332110                   111 69


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.||+++|++++++
T Consensus       161 ~~sK~~~e~~~~~~  174 (322)
T 2p4h_X          161 AVSKTLAEKAVLEF  174 (322)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.89  E-value=1.6e-22  Score=155.52  Aligned_cols=129  Identities=15%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHH-HCCCcEEEeecCCC-Cccccc-CCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREAL-DRGLTVASLSRSGR-SSLRDS-WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~-~~g~~V~~~~r~~~-~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      |+|+|+||||+|+||++++++|+ ++|++|++++|+.+ ...+.. ...++.++.+|++|+++++++++++|+||||+|.
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~   83 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME   83 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence            45679999999999999999999 89999999999865 322110 3468999999999999999999999999999986


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCCc--------CCc-chhhhHHhhHHHHHhh
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVANY--------LLQ-GYYEGKDSNLSPLLAC  193 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~~--------~~~-~Y~~sK~~~E~~~~~~  193 (200)
                      .         |+. +.++++++++.++++||++||. .|+....        ... .|+.+|.++|+++++.
T Consensus        84 ~---------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~  145 (221)
T 3r6d_A           84 S---------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRES  145 (221)
T ss_dssp             C---------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred             C---------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcccccccccccccHHHHHHHHHHHHHHhC
Confidence            3         445 8889999999999999999995 3432221        112 7999999999999874

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.89  E-value=3.3e-23  Score=165.00  Aligned_cols=122  Identities=17%  Similarity=0.223  Sum_probs=106.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~-  133 (200)
                      |+|+||||+|+||++++++|+++|++|++++|.                .+|++|++.+.++++  ++|+|||+||... 
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~~   69 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK----------------LLDITNISQVQQVVQEIRPHIIIHCAAYTKV   69 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT----------------TSCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc----------------ccCCCCHHHHHHHHHhcCCCEEEECCcccCh
Confidence            499999999999999999999999999999993                379999999999998  6999999999653 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhHHHHHhhcc
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNLSPLLACYS  195 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~~  195 (200)
                           ++...+++|+.++.+++++|++.++ +|||+|| ..|+..          ..+.+.|+.+|+++|++++.+..
T Consensus        70 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~  146 (287)
T 3sc6_A           70 DQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHN  146 (287)
T ss_dssp             HHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence                 5567889999999999999999988 7999999 456543          23567899999999999998644

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.89  E-value=1e-22  Score=161.25  Aligned_cols=139  Identities=14%  Similarity=0.126  Sum_probs=112.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+.. +.....++.++.+|++|+++++++++       ++|++|
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   92 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERL-KALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIV   92 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHH-HTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            4678999999999999999999999999999999985542 22223478999999999999988776       689999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+.+....|+.||++++.+.+.
T Consensus        93 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK~a~~~~~~~  172 (266)
T 3p19_A           93 NNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISEN  172 (266)
T ss_dssp             ECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCCCchHHHHHHHHHHHHHH
Confidence            9999642          23457899999999977765    456778999999964344455678999999999998886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       173 l  173 (266)
T 3p19_A          173 V  173 (266)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.89  E-value=2.3e-23  Score=159.06  Aligned_cols=129  Identities=16%  Similarity=0.155  Sum_probs=111.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ++|+|+||||+|++|++++++|+++|+  +|++++|+...     ...+++++.+|++|++++.+++  +|+||||+|..
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-----~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~   76 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-----EHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTT   76 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-----CCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-----cCCCceEEeccccCHHHHHHhh--hcEEEECeeec
Confidence            467999999999999999999999998  99999998655     1357888999999998888877  99999999964


Q ss_pred             C----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          133 G----SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .    +++..+++|+.++.++++++++.++++||++||. .|+   .+...|+.+|+++|+++++.
T Consensus        77 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~---~~~~~y~~sK~~~e~~~~~~  139 (215)
T 2a35_A           77 IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA---KSSIFYNRVKGELEQALQEQ  139 (215)
T ss_dssp             HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT---TCSSHHHHHHHHHHHHHTTS
T ss_pred             cccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCC---CCccHHHHHHHHHHHHHHHc
Confidence            3    4567789999999999999999999999999994 343   35678999999999999874

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.89  E-value=3e-22  Score=155.99  Aligned_cols=139  Identities=13%  Similarity=0.116  Sum_probs=115.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag  130 (200)
                      ..+|+++||||+++||+++++.|+++|++|++++|+.+... .....++..+.+|++|+++++++++   ++|++|||||
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG   87 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVH-APRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG   87 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTT-SCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHh-hhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            36899999999999999999999999999999999876532 2334689999999999999998776   6899999999


Q ss_pred             cCC--------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          131 GFG--------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~--------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...        .|+..+++|+.+++.+.+++...   +..+||++||...-.+.+....|++||+++..+.+..
T Consensus        88 i~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~l  161 (242)
T 4b79_A           88 ISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSL  161 (242)
T ss_dssp             CCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            643        45678899999999888876432   2369999999654455566789999999999988863

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.88  E-value=3.1e-22  Score=157.97  Aligned_cols=136  Identities=14%  Similarity=0.127  Sum_probs=112.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...    ..++.++.+|++|+++++++++       ++|++|
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv  101 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA----DPDIHTVAGDISKPETADRIVREGIERFGRIDSLV  101 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS----STTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc----cCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            35789999999999999999999999999999999865432    2478999999999999988876       799999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccC--cCCcCCcchhhhHHhhHHHH
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFG--VANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~--~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      ||||...          .++..+++|+.+++++++++    ++.+.++||++||....  .+..+...|+.||++++.+.
T Consensus       102 ~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sKaa~~~l~  181 (260)
T 3un1_A          102 NNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVT  181 (260)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTTCCCHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCCCccHHHHHHHHHHHHHH
Confidence            9999642          23567889999999998887    45677899999995322  34456678999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       182 ~~l  184 (260)
T 3un1_A          182 RSL  184 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.88  E-value=1.4e-22  Score=159.41  Aligned_cols=140  Identities=19%  Similarity=0.170  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999998765322  1123478899999999999988876       7999


Q ss_pred             EEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc----------CCCEEEEEeccccCcCCcCCcchh
Q 029008          125 VISCVGGFG--------------SNSYMYKINGTANINAIRAASEK----------GVKRFVYISAADFGVANYLLQGYY  180 (200)
Q Consensus       125 vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~----------~~~~~v~vSS~~~~~~~~~~~~Y~  180 (200)
                      +|||||...              .++..+++|+.+++++++++.+.          +.++||++||...-.+.++...|+
T Consensus        85 lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  164 (257)
T 3tpc_A           85 LVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYA  164 (257)
T ss_dssp             EEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCHHHH
T ss_pred             EEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCCCCcchH
Confidence            999999642              23456899999999999988653          345899999964334455678999


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .||++++.+.+..
T Consensus       165 asKaa~~~~~~~l  177 (257)
T 3tpc_A          165 ASKGGVAALTLPA  177 (257)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988763

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.88  E-value=1.9e-22  Score=171.91  Aligned_cols=142  Identities=20%  Similarity=0.250  Sum_probs=116.4

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHC---CCcEEEeecCCCCccc------c--------------cCCCCeeEEEcc
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDR---GLTVASLSRSGRSSLR------D--------------SWANNVIWHQGN  108 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~------~--------------~~~~~~~~~~~D  108 (200)
                      ....+|+|+||||+||||++++++|+++   |++|++++|+......      .              ....+++++.+|
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            4457899999999999999999999999   9999999998653210      0              012589999999


Q ss_pred             CC------CHHHHHHHhcCCCEEEEccccCC--CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCCcC----
Q 029008          109 LL------SSDSWKEALDGVTAVISCVGGFG--SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVANYL----  175 (200)
Q Consensus       109 l~------d~~~~~~~~~~~d~vi~~ag~~~--~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~~~----  175 (200)
                      ++      |.+.++++++++|+||||||...  .+...+++|+.++.+++++|.+.++++|||+||. .|+.....    
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~~~E  228 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTE  228 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTTCCS
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCCcCC
Confidence            98      66789999999999999999753  4567889999999999999999999999999994 45432110    


Q ss_pred             -----------------CcchhhhHHhhHHHHHhh
Q 029008          176 -----------------LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       176 -----------------~~~Y~~sK~~~E~~~~~~  193 (200)
                                       .+.|+.+|+++|++++++
T Consensus       229 ~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~  263 (478)
T 4dqv_A          229 DADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREA  263 (478)
T ss_dssp             SSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHH
T ss_pred             cccccccCcccccccccccchHHHHHHHHHHHHHH
Confidence                             144999999999999985

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.88  E-value=1.6e-22  Score=160.91  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=108.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC--CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~  134 (200)
                      |+|+||||+|+||++++++|+++  |++|++++|+..+.. .....+++++.+|++|++++.++++++|+|||++|... 
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~-   78 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS-TLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHY-   78 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH-HHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCS-
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh-HHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCc-
Confidence            57999999999999999999999  999999999865422 11124788999999999999999999999999998631 


Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          135 NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                       .  -++|+.++.+++++|++.++++||++||....   .....|+.+|.++|+++++.
T Consensus        79 -~--~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~---~~~~~y~~~K~~~E~~~~~~  131 (287)
T 2jl1_A           79 -D--NTLLIVQHANVVKAARDAGVKHIAYTGYAFAE---ESIIPLAHVHLATEYAIRTT  131 (287)
T ss_dssp             -C--HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGG---GCCSTHHHHHHHHHHHHHHT
T ss_pred             -C--chHHHHHHHHHHHHHHHcCCCEEEEECCCCCC---CCCCchHHHHHHHHHHHHHc
Confidence             1  16799999999999999999999999995321   22358999999999999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.88  E-value=1.9e-22  Score=159.36  Aligned_cols=140  Identities=19%  Similarity=0.168  Sum_probs=113.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++       
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999999998644211      1112578999999999999988776       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEeccccC-cCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----GVKRFVYISAADFG-VANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~~-~~~~~~~~Y~~sK~~  185 (200)
                      ++|++|||||...          .++..+++|+.+++++++++.+.    +.++||++||.... .+.++...|+.+|++
T Consensus        88 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~a  167 (262)
T 3pk0_A           88 GIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAA  167 (262)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCCChhhHHHHHH
Confidence            7999999999642          23456899999999988887554    67899999995432 445667899999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       168 ~~~l~~~l  175 (262)
T 3pk0_A          168 QLGFMRTA  175 (262)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.88  E-value=3.1e-22  Score=158.78  Aligned_cols=137  Identities=15%  Similarity=0.128  Sum_probs=112.0

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ....+|+|+||||+|+||.+++++|+++|++|++++|+.+..     ...+..+.+|++|+++++++++       ++|+
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   84 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-----VNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDI   84 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-----TTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-----cCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            446789999999999999999999999999999999986543     2367889999999999988776       6899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .++..+++|+.+++++++++..    .+.++||++||...-.+.+....|+.||++++.+.
T Consensus        85 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~  164 (269)
T 3vtz_A           85 LVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLT  164 (269)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHH
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCChhHHHHHHHHHHHH
Confidence            999999642          2345678999999998888643    56679999999643445566789999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       165 ~~l  167 (269)
T 3vtz_A          165 RSV  167 (269)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.88  E-value=1.7e-22  Score=165.76  Aligned_cols=137  Identities=18%  Similarity=0.186  Sum_probs=109.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-----CCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d~vi~~  128 (200)
                      .+|+|+||||+||||++++++|+++| ++|++++|......... ..++. +.+|++|++.++++++     ++|+|||+
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~Vih~  122 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVN-LVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHE  122 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGG-TTTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhc-ccCce-EeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence            45799999999999999999999999 99999998765421111 12333 6789999999999987     59999999


Q ss_pred             cccCC----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhh
Q 029008          129 VGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       129 ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||...    ++...+++|+.++.+++++|.+.++ +||++|| ..|+...          .+.+.|+.+|+++|++++.+
T Consensus       123 A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  201 (357)
T 2x6t_A          123 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQI  201 (357)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSHHHHHHHHHHHHHHHH
T ss_pred             CcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcCCCCCCChhHHHHHHHHHHHHHH
Confidence            99653    3456789999999999999999988 9999999 4565432          24678999999999999875


Q ss_pred             c
Q 029008          194 Y  194 (200)
Q Consensus       194 ~  194 (200)
                      .
T Consensus       202 ~  202 (357)
T 2x6t_A          202 L  202 (357)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.88  E-value=3.8e-22  Score=158.30  Aligned_cols=140  Identities=16%  Similarity=0.084  Sum_probs=115.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999998765321  1124578899999999999998876       7899


Q ss_pred             EEEccccCCC------------CcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          125 VISCVGGFGS------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       125 vi~~ag~~~~------------~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      +|||||....            ++..+++|+.+++++++++    ++.+.++||++||...-.+.++...|+.||++++.
T Consensus        89 lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~  168 (271)
T 3tzq_B           89 VDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIET  168 (271)
T ss_dssp             EEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSSCHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCCChHHHHHHHHHHH
Confidence            9999996521            2457899999999999988    56677799999996544455667899999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       169 l~~~l  173 (271)
T 3tzq_B          169 LTRYV  173 (271)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.88  E-value=6.8e-22  Score=155.00  Aligned_cols=135  Identities=10%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+..     ..++.++.+|++|+++++++++       ++|++|
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv   79 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE-----QYPFATEVMDVADAAQVAQVCQRLLAETERLDALV   79 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS-----CCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh-----cCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3568999999999999999999999999999999986531     1237889999999999988876       689999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+.++...|+.+|+++|.+.+.
T Consensus        80 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  159 (250)
T 2fwm_X           80 NAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALS  159 (250)
T ss_dssp             ECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCCchHHHHHHHHHHHHHH
Confidence            9999632          23567899999999998887    455678999999964444556678899999999998886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       160 l  160 (250)
T 2fwm_X          160 V  160 (250)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.88  E-value=1.5e-22  Score=155.52  Aligned_cols=128  Identities=20%  Similarity=0.111  Sum_probs=105.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~  136 (200)
                      |+|+||||+|+||++++++|+++|++|++++|+.++.. .....+++++.+|++|++.  +.+.++|+||||+|... ..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-~~~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~-~~   76 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA-DRLGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPW-GS   76 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHTCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCT-TS
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccc-cccCCCceEEecccccccH--hhcccCCEEEECCccCC-Cc
Confidence            47999999999999999999999999999999865422 2234689999999999887  78889999999999852 22


Q ss_pred             ccchhhHHHHHHHHHHHHHcCCCEEEEEecc-c-cCcCC------------cCCcchhhhHHhhHHH
Q 029008          137 YMYKINGTANINAIRAASEKGVKRFVYISAA-D-FGVAN------------YLLQGYYEGKDSNLSP  189 (200)
Q Consensus       137 ~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~-~~~~~------------~~~~~Y~~sK~~~E~~  189 (200)
                      ...++|+.++.+++++|++.+ ++||++||. . ++.+.            .+.+.|+.+|++.|.+
T Consensus        77 ~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  142 (224)
T 3h2s_A           77 GRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEY  142 (224)
T ss_dssp             SCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHHHHHHHHHH
Confidence            356889999999999999999 999999984 2 22211            1267899999999965

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.88  E-value=1.7e-22  Score=160.10  Aligned_cols=141  Identities=17%  Similarity=0.137  Sum_probs=112.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ...+|+++||||+|+||++++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++      
T Consensus        18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3567899999999999999999999999999999998543111      1113468899999999999888776      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccc-cCcCCcCCcchhhhHH
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD-FGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~-~~~~~~~~~~Y~~sK~  184 (200)
                       ++|+||||||...          .++..+++|+.+++++++++.    +.+.++||++||.. ...+.++...|+.+|+
T Consensus        98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~  177 (267)
T 1vl8_A           98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKG  177 (267)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHHH
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCCCChhHHHHHH
Confidence             6899999999643          234578899999999888773    45667999999965 3344556778999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+++..
T Consensus       178 a~~~~~~~l  186 (267)
T 1vl8_A          178 GVASLTKAL  186 (267)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988863

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.88  E-value=8.6e-23  Score=159.79  Aligned_cols=139  Identities=16%  Similarity=0.131  Sum_probs=112.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||+|+||.+++++|+++|++|++++++.....+      .....++.++.+|++|+++++++++       +
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999999999998886432111      1124578899999999999988876       7


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+.++...|+.||++++
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~  162 (246)
T 3osu_A           83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVI  162 (246)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHH
Confidence            899999999642          23557899999999999988    5566779999999543334556789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       163 ~~~~~l  168 (246)
T 3osu_A          163 GLTKSA  168 (246)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.88  E-value=6.2e-22  Score=156.57  Aligned_cols=133  Identities=16%  Similarity=0.145  Sum_probs=110.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~  127 (200)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+.      ..++.++.+|++|+++++++++       ++|+|||
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            56899999999999999999999999999999997654      3468899999999999988776       6999999


Q ss_pred             ccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          128 CVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       128 ~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |||...          .++..+++|+.+++++++++.+    .+.++||++||...-.+.++...|+.+|++++.+++..
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l  160 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSI  160 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCCCchhHHHHHHHHHHHHHHH
Confidence            999642          2356789999999988888754    45679999999643344556788999999999998864

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.88  E-value=9e-23  Score=163.23  Aligned_cols=124  Identities=18%  Similarity=0.149  Sum_probs=105.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~ag~~~-  133 (200)
                      |+|+||||+|+||++++++|+ +|++|++++|+..            ++.+|+.|++.+.+++++  +|+|||+||... 
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~------------~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~   67 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK------------EFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAV   67 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS------------SSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc------------cccccCCCHHHHHHHHHhcCCCEEEECcccCCH
Confidence            479999999999999999999 8999999998752            356899999999999986  999999998643 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhhc
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                           ++...+++|+.++.+++++|++.++ +|||+|| ..|+...          .+.+.|+.+|+++|++++++.
T Consensus        68 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  143 (299)
T 1n2s_A           68 DKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNC  143 (299)
T ss_dssp             HHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHHHHHHC
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhC
Confidence                 4456789999999999999998887 8999999 4555422          346789999999999999864

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.88  E-value=2.3e-22  Score=158.51  Aligned_cols=140  Identities=20%  Similarity=0.084  Sum_probs=112.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHh--------c
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEAL--------D  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~--------~  120 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+     .....++.++.+|++|++++++++        .
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999997543211     011346889999999999988877        4


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|++|||||...          .++..+++|+.++.++++++.    +.+.++||++||...-.+.++...|+.+|+++
T Consensus        87 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  166 (260)
T 2ae2_A           87 KLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAM  166 (260)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCcchHHHHHHHH
Confidence            6999999999542          234578999999999988873    45677999999954334445667899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+++..
T Consensus       167 ~~~~~~l  173 (260)
T 2ae2_A          167 DQLTRCL  173 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.88  E-value=3.5e-22  Score=157.35  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=112.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR   83 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999998644211     1124578999999999999988776       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~-----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||||...          .++..+++|+.+++++.+++.     +.+.++||++||.....+.+....|+.||+++
T Consensus        84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  163 (257)
T 3imf_A           84 IDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGV  163 (257)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTTCHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCCCcHHHHHHHHHH
Confidence            899999999532          235678999999999988873     33467999999965444556678899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       164 ~~l~~~l  170 (257)
T 3imf_A          164 LAMTKTL  170 (257)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.88  E-value=2e-22  Score=161.75  Aligned_cols=141  Identities=21%  Similarity=0.190  Sum_probs=113.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++      
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF  117 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            3467899999999999999999999999999999998654221      1112578999999999998887765      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccC-cCCcCCcchhhhHH
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFG-VANYLLQGYYEGKD  184 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~-~~~~~~~~Y~~sK~  184 (200)
                       ++|++|||||...          .++..+++|+.+++++++++    ++.+.++||++||.... .+.++...|+.||+
T Consensus       118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~asKa  197 (293)
T 3rih_A          118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKA  197 (293)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBCTTCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCCCCCHHHHHHHH
Confidence             6899999999642          23567899999999998887    45677899999995432 44566789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       198 a~~~l~~~l  206 (293)
T 3rih_A          198 AQLGFMRTA  206 (293)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998863

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.88  E-value=3.2e-22  Score=161.54  Aligned_cols=123  Identities=20%  Similarity=0.224  Sum_probs=105.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~  133 (200)
                      +|+|+||||+|+||++++++|+++|++|++++|+.               .+|+.|++.+.++++  ++|+|||+||...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~---------------~~D~~d~~~~~~~~~~~~~d~vih~a~~~~   67 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------ELNLLDSRAVHDFFASERIDQVYLAAAKVG   67 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc---------------cCCccCHHHHHHHHHhcCCCEEEEcCeecC
Confidence            47899999999999999999999999999988752               269999999999998  8999999999753


Q ss_pred             -------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC--------------CcC-CcchhhhHHhhHHHH
Q 029008          134 -------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA--------------NYL-LQGYYEGKDSNLSPL  190 (200)
Q Consensus       134 -------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~--------------~~~-~~~Y~~sK~~~E~~~  190 (200)
                             ++...+++|+.++.+++++|.+.++++||++|| ..|+..              ..+ .+.|+.+|.++|+++
T Consensus        68 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~  147 (321)
T 1e6u_A           68 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLC  147 (321)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHH
T ss_pred             CcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHHHHHHHHHHH
Confidence                   345678999999999999999999999999999 456532              112 258999999999999


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +++
T Consensus       148 ~~~  150 (321)
T 1e6u_A          148 ESY  150 (321)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.88  E-value=1.8e-22  Score=154.60  Aligned_cols=126  Identities=17%  Similarity=0.122  Sum_probs=103.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCCc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~  136 (200)
                      |+|+||||+|+||++++++|+++|++|++++|+.++.....  .+++++.+|++|++.  +.+.++|+||||+|...   
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~---   73 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTL--SDLSDQNVVVDAYGISP---   73 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCH--HHHTTCSEEEECCCSST---
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhh--hhhcCCCEEEECCcCCc---
Confidence            57999999999999999999999999999999865432211  678999999999887  78889999999999843   


Q ss_pred             ccchhhHHHHHHHHHHHHHcCCCEEEEEeccc--cCcC----------CcCCcchhhhHHhhHHH
Q 029008          137 YMYKINGTANINAIRAASEKGVKRFVYISAAD--FGVA----------NYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       137 ~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~--~~~~----------~~~~~~Y~~sK~~~E~~  189 (200)
                      ...++|+.++.++++++++.++++||++||..  ++.+          ..+.+.|+.+|...|.+
T Consensus        74 ~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~  138 (221)
T 3ew7_A           74 DEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQL  138 (221)
T ss_dssp             TTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC-------------------CCCSCCHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHHHH
Confidence            24678999999999999999899999999952  2222          23557799999999986

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.88  E-value=3.3e-22  Score=156.51  Aligned_cols=139  Identities=15%  Similarity=0.205  Sum_probs=112.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      |.|+|+||||+++||+++++.|+++|++|++++|+.+...+ .....++.++++|++|+++++++++       ++|++|
T Consensus         1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLV   80 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV   80 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46899999999999999999999999999999998654222 1224578899999999999888765       689999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||||...          +|+..+++|+.+++.+.+++.+.   +..+||++||...-.+.+....|++||+++..+.+..
T Consensus        81 NNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~~~~~~Y~asKaal~~ltk~l  160 (247)
T 3ged_A           81 NNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHAL  160 (247)
T ss_dssp             ECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            9998532          35678899999999888876432   2379999999654455566788999999999988863

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.88  E-value=3.3e-22  Score=157.14  Aligned_cols=140  Identities=14%  Similarity=0.164  Sum_probs=113.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~------~~  122 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++      ++
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i   84 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL   84 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence            467899999999999999999999999999999998654221     1113578999999999999998886      68


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.+....|+.||++++.
T Consensus        85 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~  164 (252)
T 3h7a_A           85 EVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRA  164 (252)
T ss_dssp             EEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTTCHHHHHHHHHHHH
T ss_pred             eEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCCCccHHHHHHHHHH
Confidence            99999999643          23457899999999888876    44566799999996544455667889999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       165 l~~~l  169 (252)
T 3h7a_A          165 VAQSM  169 (252)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.88  E-value=1.8e-22  Score=159.07  Aligned_cols=140  Identities=16%  Similarity=0.184  Sum_probs=112.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            457899999999999999999999999999999997544211  1123578999999999999998876       7999


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||||...          .++..+++|+.+++++++++.+.    + ..+||++||...-.+.+....|+.+|+++|.+
T Consensus        86 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  165 (259)
T 4e6p_A           86 LVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISL  165 (259)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHH
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCCChHHHHHHHHHHHH
Confidence            999999642          23567889999999998887543    3 45999999964444556678899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       166 ~~~l  169 (259)
T 4e6p_A          166 TQSA  169 (259)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.88  E-value=2.1e-22  Score=161.25  Aligned_cols=141  Identities=20%  Similarity=0.163  Sum_probs=115.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD---GVTAVIS  127 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~  127 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.++..+  .....++.++.+|++|+++++++++   ++|++||
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~   92 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLIN   92 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEE
Confidence            3567899999999999999999999999999999998654211  1124578999999999999999887   5799999


Q ss_pred             ccccCC--------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccc-c-Cc-----------CCcCCcchhhhHHhh
Q 029008          128 CVGGFG--------SNSYMYKINGTANINAIRAASEKGVKRFVYISAAD-F-GV-----------ANYLLQGYYEGKDSN  186 (200)
Q Consensus       128 ~ag~~~--------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~-~-~~-----------~~~~~~~Y~~sK~~~  186 (200)
                      |||...        .++..+++|+.+++++++++.+...++||++||.. + +.           +..+...|++||++.
T Consensus        93 nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~  172 (291)
T 3rd5_A           93 NAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLAN  172 (291)
T ss_dssp             CCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHHHHHH
T ss_pred             CCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchHHHHHHHH
Confidence            999642        45678899999999999999888778999999943 2 21           123446799999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       173 ~~~~~~l  179 (291)
T 3rd5_A          173 LLFTSEL  179 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988864

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.88  E-value=2.3e-22  Score=160.18  Aligned_cols=142  Identities=12%  Similarity=0.047  Sum_probs=114.0

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ....+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            34567899999999999999999999999999999998643211  1124578999999999999888776       68


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||||...          .++..+++|+.+++++.+++.    +.+.++||++||...-.+.++...|+.||++++.
T Consensus       103 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~  182 (277)
T 4dqx_A          103 DVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISS  182 (277)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHH
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCCCChhHHHHHHHHHH
Confidence            99999999532          235577899999998888874    3455699999996544455667899999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       183 l~~~l  187 (277)
T 4dqx_A          183 LTRAM  187 (277)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.88  E-value=2.4e-22  Score=157.91  Aligned_cols=140  Identities=11%  Similarity=0.056  Sum_probs=114.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999998654211     1224578999999999999988765       5


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||||...           .|+..+++|+.+++.+.+++    ++++..+||++||...-.+.+....|+++|+++
T Consensus        85 iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~~~Y~asKaal  164 (254)
T 4fn4_A           85 IDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGL  164 (254)
T ss_dssp             CCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSCHHHHHHHHHH
T ss_pred             CCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCChHHHHHHHHH
Confidence            899999999532           34667899999999887776    445667999999965445556678899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      ..+.+..
T Consensus       165 ~~ltr~l  171 (254)
T 4fn4_A          165 IGLTRSI  171 (254)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988863

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.88  E-value=3.8e-22  Score=157.10  Aligned_cols=141  Identities=15%  Similarity=0.128  Sum_probs=114.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3568899999999999999999999999999999997643211     1124578999999999999888776       


Q ss_pred             CCCEEEEccccCC---------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          121 GVTAVISCVGGFG---------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       121 ~~d~vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      ++|++|||||...         .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|++++
T Consensus        89 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~  168 (256)
T 3gaf_A           89 KITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVN  168 (256)
T ss_dssp             CCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCCchHHHHHHHHHH
Confidence            6899999999643         234578999999999988873    456679999999654455566789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       169 ~~~~~l  174 (256)
T 3gaf_A          169 HLTRNI  174 (256)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.88  E-value=4.6e-22  Score=157.06  Aligned_cols=125  Identities=18%  Similarity=0.130  Sum_probs=105.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~ag~~~-  133 (200)
                      |+|+||||+|+||++++++|+ +|++|++++|+....      .+   +.+|++|++++.+++++  +|+||||||... 
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~   70 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ------GG---YKLDLTDFPRLEDFIIKKRPDVIINAAAMTDV   70 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT------TC---EECCTTSHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC------CC---ceeccCCHHHHHHHHHhcCCCEEEECCcccCh
Confidence            479999999999999999999 589999999986431      12   88999999999999986  999999999653 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC---------cCCcchhhhHHhhHHHHHh
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN---------YLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~---------~~~~~Y~~sK~~~E~~~~~  192 (200)
                           +++..+++|+.++.++++++.+.+. +||++||. .|+...         .+.+.|+.+|+++|++++.
T Consensus        71 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~  143 (273)
T 2ggs_A           71 DKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQ  143 (273)
T ss_dssp             HHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSCSBCTTSCCCCSSHHHHHHHHHHHHHCC
T ss_pred             hhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCCCcCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence                 4567789999999999999998886 99999994 454322         2467899999999999876

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.87  E-value=2.8e-22  Score=159.93  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=112.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.....+       .....++.++.+|++|+++++++++      
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            467899999999999999999999999999999985432111       1114578999999999999988776      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                       ++|++|||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+.+....|+.+|++
T Consensus       103 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  182 (281)
T 3v2h_A          103 GGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHG  182 (281)
T ss_dssp             SSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCchHHHHHHHH
Confidence             6899999999642          23467899999999998887    45566799999996444455667899999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       183 ~~~l~~~l  190 (281)
T 3v2h_A          183 IMGLTKTV  190 (281)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.87  E-value=1.2e-22  Score=162.87  Aligned_cols=128  Identities=23%  Similarity=0.193  Sum_probs=103.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~ag~  131 (200)
                      .++|+|+||||+|+||++++++|+++|+      +....      ...++++.+|++|++.+.+++++  +|+|||+|+.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~------~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~A~~   71 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPGED------WVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAAM   71 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE------EEECCTTTCCTTSHHHHHHHHHHSCCSEEEECCCC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc------ccccCceecccCCHHHHHHHHhhcCCCEEEECcee
Confidence            4678999999999999999999999998      11111      12345567899999999999986  9999999997


Q ss_pred             CC-------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC--------------cCCc-chhhhHHhhHH
Q 029008          132 FG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN--------------YLLQ-GYYEGKDSNLS  188 (200)
Q Consensus       132 ~~-------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~--------------~~~~-~Y~~sK~~~E~  188 (200)
                      ..       ++...+++|+.++.+++++|++.++++|||+|| ..|+...              .+.. +|+.+|+++|+
T Consensus        72 ~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~  151 (319)
T 4b8w_A           72 VGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDV  151 (319)
T ss_dssp             CCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHHHHHHHH
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHHHHHHHHH
Confidence            43       345678999999999999999999999999999 4565422              1223 59999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++.+
T Consensus       152 ~~~~~  156 (319)
T 4b8w_A          152 QNRAY  156 (319)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99874

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.87  E-value=8.1e-22  Score=157.05  Aligned_cols=140  Identities=17%  Similarity=0.148  Sum_probs=113.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-----------c------ccCCCCeeEEEccCCCHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------R------DSWANNVIWHQGNLLSSDSWK  116 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~------~~~~~~~~~~~~Dl~d~~~~~  116 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.....           +      .....++.++.+|++|+++++
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            46789999999999999999999999999999999743210           0      112357899999999999998


Q ss_pred             HHhc-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcC
Q 029008          117 EALD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYL  175 (200)
Q Consensus       117 ~~~~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~  175 (200)
                      ++++       ++|++|||||...          .++..+++|+.+++++++++    .+.+.++||++||...-.+.++
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~  167 (281)
T 3s55_A           88 SFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFA  167 (281)
T ss_dssp             HHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCTT
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCCCC
Confidence            8776       6899999999642          23567899999999998886    3456679999999654445566


Q ss_pred             CcchhhhHHhhHHHHHhh
Q 029008          176 LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       176 ~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...|+.+|++++.+.+..
T Consensus       168 ~~~Y~asK~a~~~~~~~l  185 (281)
T 3s55_A          168 QASYVSSKWGVIGLTKCA  185 (281)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHH
Confidence            789999999999998864

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.87  E-value=2.7e-22  Score=157.13  Aligned_cols=140  Identities=13%  Similarity=0.137  Sum_probs=113.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            456899999999999999999999999999999997543111     0113578899999999999998876       7


Q ss_pred             CCEEEEccccCCC---------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          122 VTAVISCVGGFGS---------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       122 ~d~vi~~ag~~~~---------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      +|+||||||....         ++..+++|+.++.++++++.    +.+.++||++||.....+.++...|+.+|++.|.
T Consensus        89 ~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~  168 (255)
T 1fmc_A           89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASH  168 (255)
T ss_dssp             CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCCcccHHHHHHHHH
Confidence            9999999996431         24567899999999888874    4567899999996444455667899999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       169 ~~~~~  173 (255)
T 1fmc_A          169 LVRNM  173 (255)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.87  E-value=3.6e-22  Score=157.61  Aligned_cols=140  Identities=9%  Similarity=0.059  Sum_probs=111.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc--C-CCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS--W-ANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~--~-~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.++..+   ..  . ..++.++.+|++|+++++++++       
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG   84 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999999997543211   00  0 3478899999999999988876       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|+||||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|+++
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  164 (263)
T 3ai3_A           85 GADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAAL  164 (263)
T ss_dssp             SCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCcchHHHHHHHH
Confidence            7999999999642          234578999999998888874    45678999999954333445667899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       165 ~~~~~~l  171 (263)
T 3ai3_A          165 MMFSKTL  171 (263)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988864

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.87  E-value=5.5e-22  Score=155.44  Aligned_cols=140  Identities=12%  Similarity=0.122  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC-CCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+. +...+  .....++.++.+|++|+++++++++       ++|
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            3568999999999999999999999999999999986 32111  1123578899999999999888754       789


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~----a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ++|||||...          .++..+++|+.+++++.++    +++.+.++||++||...-.+.++...|+.+|++++.+
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  164 (249)
T 2ew8_A           85 ILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGF  164 (249)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCchhHHHHHHHHHHH
Confidence            9999999642          2345789999999888877    4556678999999954334455678899999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       165 ~~~l  168 (249)
T 2ew8_A          165 TRAL  168 (249)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.87  E-value=3.3e-22  Score=156.41  Aligned_cols=142  Identities=18%  Similarity=0.107  Sum_probs=112.8

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc---CCCEEE
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD---GVTAVI  126 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi  126 (200)
                      ....+|+|+||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|.++++++++   ++|++|
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li   89 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILV   89 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            44678999999999999999999999999999999997544211  1123578999999999999998887   689999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|++++.+++.
T Consensus        90 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  169 (249)
T 3f9i_A           90 CNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKS  169 (249)
T ss_dssp             ECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCSCSHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCCCCchhHHHHHHHHHHHHH
Confidence            9999532          346678999999999888764    34567999999954334556678899999999998886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       170 l  170 (249)
T 3f9i_A          170 L  170 (249)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.87  E-value=5.2e-22  Score=157.05  Aligned_cols=140  Identities=12%  Similarity=0.062  Sum_probs=110.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c---c-CCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D---S-WANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~---~-~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+   .   . ...++.++.+|++|+++++++++      
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            457899999999999999999999999999999998643211   0   0 13578899999999999988776      


Q ss_pred             -CCCEEEEccccCCC-----------CcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 -~~d~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                       ++|+||||||....           ++..+++|+.+++.+.+++    ++.+.++||++||...-.+.++...|+.+|+
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  170 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKH  170 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHHH
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCCCCccHHHHHH
Confidence             68999999996422           3457799999998666554    4557789999999643344456778999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       171 a~~~~~~~l  179 (267)
T 1iy8_A          171 GVVGLTRNS  179 (267)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988853

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.87  E-value=1.2e-21  Score=159.75  Aligned_cols=134  Identities=20%  Similarity=0.214  Sum_probs=106.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c-cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+++|+||||+||||++++++|+++|++|++++|.......   . ....+++++.+|+.|+.     +.++|+|||+|
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vih~A   99 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL-----YIEVDQIYHLA   99 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCC-----CCCCSEEEECC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChh-----hcCCCEEEECc
Confidence            357899999999999999999999999999999997543211   1 11357899999998763     67899999999


Q ss_pred             ccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC---------------CcCCcchhhhHHhhH
Q 029008          130 GGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA---------------NYLLQGYYEGKDSNL  187 (200)
Q Consensus       130 g~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~---------------~~~~~~Y~~sK~~~E  187 (200)
                      |...      ++...+++|+.++.+++++|.+.++ +||++|| ..|+..               ..+.+.|+.+|+++|
T Consensus       100 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E  178 (343)
T 2b69_A          100 SPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAE  178 (343)
T ss_dssp             SCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHH
T ss_pred             cccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHHH
Confidence            9643      3456789999999999999998886 9999999 456532               234567999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      ++++.+
T Consensus       179 ~~~~~~  184 (343)
T 2b69_A          179 TMCYAY  184 (343)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.87  E-value=6.2e-22  Score=155.74  Aligned_cols=135  Identities=21%  Similarity=0.191  Sum_probs=109.1

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.++.      ..+.++.+|++|+++++++++       ++|++
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~------~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~l   91 (253)
T 2nm0_A           18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP------EGFLAVKCDITDTEQVEQAYKEIEETHGPVEVL   91 (253)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC------TTSEEEECCTTSHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh------ccceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            34678999999999999999999999999999999975542      237889999999999888775       47999


Q ss_pred             EEccccC----------CCCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGF----------GSNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~----------~~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |||||..          +.++..+++|+.+++++++++.+    .+.++||++||.....+.+....|+.+|++++.+.+
T Consensus        92 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~  171 (253)
T 2nm0_A           92 IANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFAR  171 (253)
T ss_dssp             EEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCcHHHHHHHHHHHHHHH
Confidence            9999953          23566789999999998887643    466799999995433334456789999999999888


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       172 ~l  173 (253)
T 2nm0_A          172 SL  173 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.87  E-value=4.3e-22  Score=158.68  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=111.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999999999999998643211     1124578999999999999888775       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH------cCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE------KGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~------~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||||...          .++..+++|+.+++++.+++.+      .+.++||++||...-.+.+....|+.+|++
T Consensus       102 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa  181 (279)
T 3sju_A          102 IGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHG  181 (279)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCCCChhHHHHHHH
Confidence            899999999643          2345788999999999998755      456799999996544555667889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       182 ~~~l~~~l  189 (279)
T 3sju_A          182 VVGFTKSV  189 (279)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.87  E-value=1.2e-21  Score=156.60  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=113.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------------ccCCCCeeEEEccCCCHHHHHHHhc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------------DSWANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.++...            .....++.++.+|++|+++++++++
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   85 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA   85 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            3467899999999999999999999999999999998764211            0113578999999999999988776


Q ss_pred             -------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCC-cCCcc
Q 029008          121 -------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVAN-YLLQG  178 (200)
Q Consensus       121 -------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~~~~~-~~~~~  178 (200)
                             ++|++|||||...          .++..+++|+.+++++.+++...    +.++||++||.....+. .+...
T Consensus        86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~  165 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTP  165 (285)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGSCSHH
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCCCCCch
Confidence                   7899999999642          23457789999999999988654    55699999995433332 55688


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |++||++++.+.+..
T Consensus       166 Y~asKaal~~~~~~l  180 (285)
T 3sc4_A          166 YMMAKYGMTLCALGI  180 (285)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.87  E-value=6.5e-22  Score=155.54  Aligned_cols=139  Identities=16%  Similarity=0.171  Sum_probs=109.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            56899999999999999999999999999999998543211  1112468899999999999988876       79999


Q ss_pred             EEccccCC----------CCcccchhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGFG----------SNSYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~~----------~~~~~~~~n~~~~~~~~~----~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |||||...          .++..+++|+.+++.+.+    .+++.+.++||++||...-.+.++...|+.+|++++.+.+
T Consensus        84 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~  163 (254)
T 1hdc_A           84 VNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSK  163 (254)
T ss_dssp             EECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCchhHHHHHHHHHHHHH
Confidence            99999642          234578999999985544    4556677899999995433344567899999999999888


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       164 ~l  165 (254)
T 1hdc_A          164 LA  165 (254)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.87  E-value=3.1e-22  Score=159.06  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=109.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ++|+++||||+|+||++++++|+++|++|++++|+.++..+        .....++.++.+|++|+++++++++      
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999998543111        1112468899999999999998887      


Q ss_pred             -CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEecccc-CcCCcCCcchh
Q 029008          121 -GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK----GVKRFVYISAADF-GVANYLLQGYY  180 (200)
Q Consensus       121 -~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~-~~~~~~~~~Y~  180 (200)
                       ++|+||||||...              .++..+++|+.+++++++++.+.    + ++||++||... -.+.++...|+
T Consensus        85 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~Y~  163 (278)
T 1spx_A           85 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATPDFPYYS  163 (278)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTTSHHHH
T ss_pred             CCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCCCCccHHH
Confidence             7999999998532              12456899999999998887553    5 79999999543 33445667899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .+|++++.+.+..
T Consensus       164 ~sK~a~~~~~~~l  176 (278)
T 1spx_A          164 IAKAAIDQYTRNT  176 (278)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998863

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.87  E-value=7.7e-22  Score=155.41  Aligned_cols=140  Identities=14%  Similarity=0.157  Sum_probs=113.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   89 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDV   89 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            457899999999999999999999999999999998655221  1113578999999999999998886       7999


Q ss_pred             EEEccccCCC----------------CcccchhhHHHHHHHHHHHHHc----------CCCEEEEEeccccCcCCcCCcc
Q 029008          125 VISCVGGFGS----------------NSYMYKINGTANINAIRAASEK----------GVKRFVYISAADFGVANYLLQG  178 (200)
Q Consensus       125 vi~~ag~~~~----------------~~~~~~~n~~~~~~~~~~a~~~----------~~~~~v~vSS~~~~~~~~~~~~  178 (200)
                      ||||||....                ++..+++|+.++.++++++.+.          +.++||++||...-.+.++...
T Consensus        90 li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~  169 (265)
T 2o23_A           90 AVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAA  169 (265)
T ss_dssp             EEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCHH
T ss_pred             EEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCCCCch
Confidence            9999996421                2456789999999999988654          5678999999543334456778


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |+.+|++++.+++..
T Consensus       170 Y~~sK~a~~~~~~~l  184 (265)
T 2o23_A          170 YSASKGGIVGMTLPI  184 (265)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999988764

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.87  E-value=1.5e-22  Score=158.73  Aligned_cols=140  Identities=19%  Similarity=0.129  Sum_probs=112.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   86 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDI   86 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999998643211  1112457889999999999988876       7899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .++..+++|+.+++++.+++.+    .+.++||++||...-.+.++...|+.+|++++.+.
T Consensus        87 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~  166 (248)
T 3op4_A           87 LVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFT  166 (248)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHHHHH
Confidence            999999642          2356789999999999888743    56679999999543345566789999999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       167 ~~l  169 (248)
T 3op4_A          167 KSM  169 (248)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.87  E-value=9.7e-22  Score=173.53  Aligned_cols=138  Identities=18%  Similarity=0.219  Sum_probs=113.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHH-HHHHhcCCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS-WKEALDGVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~d~vi~~ag~~  132 (200)
                      ++|+|+||||+||||++++++|+++ |++|++++|+...........+++++.+|++|+++ ++++++++|+|||+||..
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~Aa~~  393 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIA  393 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEECCCCC
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHHHHHHhhcCCCEEEECceec
Confidence            5689999999999999999999998 89999999986553222224579999999999765 778888999999999964


Q ss_pred             C------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchhhhHHhhHH
Q 029008          133 G------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKDSNLS  188 (200)
Q Consensus       133 ~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------------~~~~~Y~~sK~~~E~  188 (200)
                      .      ++...+++|+.++.+++++|.+.+ ++||++|| ..|+...                 .+.+.|+.+|+++|+
T Consensus       394 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~  472 (660)
T 1z7e_A          394 TPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDR  472 (660)
T ss_dssp             CTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHHHHHHH
T ss_pred             CccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHHHHHHH
Confidence            3      345678899999999999999988 89999999 4454321                 223479999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++.+
T Consensus       473 ~~~~~  477 (660)
T 1z7e_A          473 VIWAY  477 (660)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99764

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.87  E-value=8.3e-22  Score=154.12  Aligned_cols=140  Identities=8%  Similarity=-0.000  Sum_probs=110.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh---cCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL---DGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vi~~ag  130 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.++..+.....++.++.+|++|++++++++   .++|+||||||
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag   83 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCc
Confidence            356899999999999999999999999999999997543221111237889999999999988764   47899999999


Q ss_pred             cCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCc-CCcchhhhHHhhHHHHHhh
Q 029008          131 GFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANY-LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~-~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...          .++..+++|+.+++++++++.    +.+.++||++||.....+.+ +...|+.+|+++|.+++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~~~~~l  161 (246)
T 2ag5_A           84 FVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSV  161 (246)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCCCCccHHHHHHHHHHHHHHH
Confidence            643          234567899999999888874    34677999999953222333 6678999999999998864

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.87  E-value=3.7e-22  Score=155.47  Aligned_cols=140  Identities=15%  Similarity=0.059  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD---GVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~a  129 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+. ....+++++.+|++|+++++++++   ++|+|||||
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A   84 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECC
Confidence            3568999999999999999999999999999999975432110 012357788999999999999887   479999999


Q ss_pred             ccCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          130 GGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       130 g~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...          .++..+++|+.++.++++++.+.    + .++||++||...-.+.++...|+.+|++.|.+++..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~~  163 (244)
T 1cyd_A           85 ALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAM  163 (244)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCCCcchhHHHHHHHHHHHHHH
Confidence            9532          23457899999999988887543    5 579999999543334455678999999999998864

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.87  E-value=1e-21  Score=153.17  Aligned_cols=139  Identities=12%  Similarity=0.095  Sum_probs=103.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEee-cCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||+|+||++++++|+++|++|++++ |+.+....     .....++.++.+|++|+++++++++       +
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            468999999999999999999999999999984 44332111     1123578999999999999988776       7


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+||||||...          .++..+++|+.++.++.+++.    +.+.++||++||...-.+.++...|+.+|+++|
T Consensus        84 ~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  163 (247)
T 2hq1_A           84 IDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLI  163 (247)
T ss_dssp             CCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------CHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcHhHHHHHHHH
Confidence            899999998632          345678999999998888765    356789999999532233455678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       164 ~~~~~l  169 (247)
T 2hq1_A          164 GFTKSI  169 (247)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.87  E-value=4.7e-22  Score=156.91  Aligned_cols=140  Identities=19%  Similarity=0.203  Sum_probs=110.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   84 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   84 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            357899999999999999999999999999999998543211  1112358899999999999998887       7999


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      ||||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.++...|+.+|+++|.++
T Consensus        85 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  164 (260)
T 1nff_A           85 LVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLT  164 (260)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCCCchhHHHHHHHHHHHH
Confidence            999999642          23457899999998666654    4556789999999543334455678999999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       165 ~~l  167 (260)
T 1nff_A          165 KST  167 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.87  E-value=2.7e-22  Score=158.86  Aligned_cols=141  Identities=20%  Similarity=0.152  Sum_probs=109.1

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ...+|+++||||+|+||++++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  103 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGID  103 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            3567899999999999999999999999999999987544211  1124578999999999999988776       689


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ++|||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.++...|+.+|++++.+
T Consensus       104 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~~  183 (266)
T 3grp_A          104 ILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGF  183 (266)
T ss_dssp             EEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCCchhHHHHHHHHHHH
Confidence            9999999642          34567899999988777665    445667999999954334445667899999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       184 ~~~l  187 (266)
T 3grp_A          184 SKAL  187 (266)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.87  E-value=6e-22  Score=155.70  Aligned_cols=139  Identities=15%  Similarity=0.131  Sum_probs=110.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-c--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-R--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .+|+++||||+|+||.+++++|+++|++|++++|+.+... +  .....++.++.+|++|+++++++++       ++|+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   82 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDI   82 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4689999999999999999999999999999999865211 1  1113468889999999999998887       7999


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.++...|+.+|++++.+.
T Consensus        83 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  162 (255)
T 2q2v_A           83 LVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLT  162 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCCCchhHHHHHHHHHHHH
Confidence            999999532          23457899999888776665    5667789999999543334455678999999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       163 ~~l  165 (255)
T 2q2v_A          163 KVV  165 (255)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.87  E-value=9.1e-22  Score=156.01  Aligned_cols=141  Identities=13%  Similarity=0.069  Sum_probs=114.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++++.....+      .....++.++.+|++|+++++++++      
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3568999999999999999999999999999998876533211      1124578999999999999988775      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcCC--CEEEEEeccc-cCcCCcCCcchhhhHHhh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAAD-FGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~~--~~~v~vSS~~-~~~~~~~~~~Y~~sK~~~  186 (200)
                       ++|++|||||...          .++..+++|+.+++++.+++.+...  ++||++||.. ...+.++...|+.||+++
T Consensus        95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~  174 (270)
T 3is3_A           95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAV  174 (270)
T ss_dssp             SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCCCCCCchhHHHHHHH
Confidence             6899999999642          2356789999999999999977643  4999999964 344556778899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       175 ~~~~~~l  181 (270)
T 3is3_A          175 DSFVRIF  181 (270)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.87  E-value=7.9e-22  Score=157.53  Aligned_cols=140  Identities=15%  Similarity=0.146  Sum_probs=112.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            456899999999999999999999999999999998643211     1123578999999999999888776       6


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCc--CCcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGV--ANYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~--~~~~~~~Y~~sK~  184 (200)
                      +|++|||||...           .++..+++|+.+++++++++    ++.+.++||++||...-.  +.++...|+.+|+
T Consensus       106 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~~~Y~asKa  185 (283)
T 3v8b_A          106 LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKA  185 (283)
T ss_dssp             CCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCSTTCHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCCCCchHHHHHHH
Confidence            899999999642           23457899999999998887    556677999999954322  4556788999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       186 a~~~l~~~l  194 (283)
T 3v8b_A          186 AQVAIVQQL  194 (283)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.87  E-value=7.3e-22  Score=155.34  Aligned_cols=137  Identities=15%  Similarity=0.090  Sum_probs=109.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+. .+.. .... .++.+|++|+++++++++       ++|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            56899999999999999999999999999999998654 2110 0013 789999999998888765       689999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .++..+++|+.+++++++++.+    .+.++||++||...-.+.++...|+.+|+++|.+++.
T Consensus        83 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  162 (256)
T 2d1y_A           83 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRS  162 (256)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCCChhHHHHHHHHHHHHHH
Confidence            9999642          2346789999999999887743    4667999999954333445677899999999999886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       163 l  163 (256)
T 2d1y_A          163 L  163 (256)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.87  E-value=1e-21  Score=153.50  Aligned_cols=139  Identities=20%  Similarity=0.176  Sum_probs=109.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||+|+||++++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++       +
T Consensus         1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999999999999997543111      1113468999999999999988876       7


Q ss_pred             CCEEEEccccCC-------------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG-------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~-------------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      +|+||||||...             .++..+++|+.+++++.+++    ++.+.++||++||...-.+.++...|+.+|+
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~  160 (250)
T 2cfc_A           81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKG  160 (250)
T ss_dssp             CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCchhHHHHHH
Confidence            999999998632             12446789999998776665    3456789999999543334456788999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      ++|.+++..
T Consensus       161 a~~~~~~~l  169 (250)
T 2cfc_A          161 AVLQLTKSV  169 (250)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.87  E-value=6.7e-22  Score=160.84  Aligned_cols=139  Identities=17%  Similarity=0.153  Sum_probs=111.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc-cc---------ccCCCCeeEEEccCCCHHHHHHHhc----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-LR---------DSWANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      .+|+++||||+|+||.+++++|+++|++|++++|+.... .+         .....++.++.+|++|+++++++++    
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999874221 10         1113578999999999999998886    


Q ss_pred             ---CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccc-cCcCCcCCcchhhh
Q 029008          121 ---GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAAD-FGVANYLLQGYYEG  182 (200)
Q Consensus       121 ---~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~-~~~~~~~~~~Y~~s  182 (200)
                         ++|+||||||...          .++..+++|+.|++++++++    ++.+.++||++||.. +....+....|++|
T Consensus        84 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~as  163 (324)
T 3u9l_A           84 EDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAA  163 (324)
T ss_dssp             HHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCSSCHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCCcchhHHHH
Confidence               7999999999532          23567899999999999988    566778999999953 32334456789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |+++|.+.+..
T Consensus       164 Kaa~~~~~~~l  174 (324)
T 3u9l_A          164 KAAMDAIAVQY  174 (324)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.87  E-value=8.2e-22  Score=155.17  Aligned_cols=138  Identities=17%  Similarity=0.208  Sum_probs=110.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC--ccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS--SLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      +|+++||||+|+||++++++|+++|++|++++|+.+.  ..+     .....++.++.+|++|+++++++++       +
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999999999999987644  111     0113478899999999999888776       7


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCC-CEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGV-KRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~-~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||||...          .++..+++|+.+++++++++.+    .+. ++||++||...-.+.++...|+.+|+++
T Consensus        82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  161 (258)
T 3a28_C           82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAV  161 (258)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCCchhHHHHHHHH
Confidence            999999999642          2345789999999998888754    366 7999999954333445667899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       162 ~~~~~~l  168 (258)
T 3a28_C          162 RGLTQAA  168 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.87  E-value=5.7e-22  Score=159.68  Aligned_cols=129  Identities=19%  Similarity=0.164  Sum_probs=101.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC---cccc----cCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS---SLRD----SWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~---~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      .++++|+||||+|+||++++++|+++|++|++++|+...   ....    ....+++++.+|+.          ++|+||
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~----------~~d~vi   74 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS----------DVRLVY   74 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT----------TEEEEE
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc----------cCCEEE
Confidence            357899999999999999999999999999999998652   1111    11234556666654          899999


Q ss_pred             EccccC------CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHH
Q 029008          127 SCVGGF------GSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSP  189 (200)
Q Consensus       127 ~~ag~~------~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~  189 (200)
                      |+||..      ..+...++ |+.++.+++++|++.++++|||+|| ..|+...          .+.+.|+.+|+++|++
T Consensus        75 ~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~  153 (321)
T 3vps_A           75 HLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMV  153 (321)
T ss_dssp             ECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred             ECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Confidence            999864      34556677 9999999999999999999999999 4565432          3467899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++.+
T Consensus       154 ~~~~  157 (321)
T 3vps_A          154 AGAH  157 (321)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9985

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.87  E-value=1.3e-21  Score=173.73  Aligned_cols=140  Identities=19%  Similarity=0.226  Sum_probs=114.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc--CCCEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD--GVTAV  125 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v  125 (200)
                      .++|+|+||||+|+||++++++|+++|++|++++|+......      .....+++++.+|++|++.++++++  ++|+|
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~V   88 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSV   88 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEE
Confidence            356899999999999999999999999999999987543211      0113578899999999999999998  89999


Q ss_pred             EEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC--------------CcCCcchhhhHH
Q 029008          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA--------------NYLLQGYYEGKD  184 (200)
Q Consensus       126 i~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~--------------~~~~~~Y~~sK~  184 (200)
                      |||||...      .+...+++|+.++.+++++|++.++++||++|| ..|+..              ..+.+.|+.+|+
T Consensus        89 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~sK~  168 (699)
T 1z45_A           89 IHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKY  168 (699)
T ss_dssp             EECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHH
T ss_pred             EECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCCCCCChHHHHHH
Confidence            99999653      234578999999999999999999999999999 456532              124578999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      ++|++++..
T Consensus       169 ~~E~~~~~~  177 (699)
T 1z45_A          169 AIENILNDL  177 (699)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999874

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.87  E-value=2.7e-22  Score=168.45  Aligned_cols=138  Identities=17%  Similarity=0.256  Sum_probs=109.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-----------------cccCCCCeeEEEccCCCHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------------RDSWANNVIWHQGNLLSSDSWK  116 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~Dl~d~~~~~  116 (200)
                      ..+++|+||||+|+||++++++|+++|++|++++|+.....                 ......++.++.+|++|++.+.
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~  146 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV  146 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence            45789999999999999999999999999999999876210                 0011368999999999988888


Q ss_pred             HHhcCCCEEEEccccCC---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcC------------------CcC
Q 029008          117 EALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVA------------------NYL  175 (200)
Q Consensus       117 ~~~~~~d~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~------------------~~~  175 (200)
                       .+.++|+||||||...   ++...+++|+.++.+++++|.+ +.++||++||...|..                  ..+
T Consensus       147 -~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~G~~~~~~~~~~~~~E~~~~~~~~~  224 (427)
T 4f6c_A          147 -LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLL  224 (427)
T ss_dssp             -CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGGGSEECSSCSCCEECTTCSCSSCCC
T ss_pred             -CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHhCCCccCCCCCccccccccccCCCC
Confidence             7789999999999753   5677889999999999999998 7889999999533221                  226


Q ss_pred             CcchhhhHHhhHHHHHhh
Q 029008          176 LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       176 ~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+.|+.+|+++|++++++
T Consensus       225 ~~~Y~~sK~~~E~~~~~~  242 (427)
T 4f6c_A          225 TSPYTRSKFYSELKVLEA  242 (427)
T ss_dssp             CSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHH
Confidence            789999999999999974

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.87  E-value=8.4e-22  Score=156.24  Aligned_cols=140  Identities=12%  Similarity=0.164  Sum_probs=111.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc-CCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+....   .. ...++.++.+|++|+++++++++       ++
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   93 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   93 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            467899999999999999999999999999999987543111   11 12378999999999999998876       79


Q ss_pred             CEEEEccccCC------------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccc-cCcCCcCCcchhhhHHh
Q 029008          123 TAVISCVGGFG------------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAAD-FGVANYLLQGYYEGKDS  185 (200)
Q Consensus       123 d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~-~~~~~~~~~~Y~~sK~~  185 (200)
                      |+||||||...            .++..+++|+.++.++++++.+    .+.++||++||.. +.....+...|+.+|++
T Consensus        94 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~sK~a  173 (278)
T 2bgk_A           94 DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHA  173 (278)
T ss_dssp             CEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHHHHH
T ss_pred             CEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCCCCcchHHHHHH
Confidence            99999999642            1245789999999999988765    3667999999953 33222266789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +|.+++..
T Consensus       174 ~~~~~~~l  181 (278)
T 2bgk_A          174 VLGLTTSL  181 (278)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.87  E-value=9.3e-22  Score=154.96  Aligned_cols=140  Identities=16%  Similarity=0.084  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.++..+     .....++.++.+|++|+++++++++       +
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999997543111     0113468899999999999888776       7


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||||...           .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|+++
T Consensus        92 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  171 (260)
T 2zat_A           92 VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTAL  171 (260)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCCCchhHHHHHHHH
Confidence            999999999532           134578999999998888864    45678999999954333445677899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       172 ~~~~~~l  178 (260)
T 2zat_A          172 LGLTKNL  178 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.87  E-value=3e-21  Score=158.57  Aligned_cols=132  Identities=17%  Similarity=0.139  Sum_probs=108.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--cccCCCCeeEEEcc-CCCHHHHHHHhcCCCEEEEccccC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGN-LLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~D-l~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      +|+|+||||+|+||++++++|+++|++|++++|+.+...  ......+++++.+| ++|++++.++++++|+||||++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~~   84 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ   84 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCCC
Confidence            578999999999999999999999999999999876531  11112478999999 999999999999999999998764


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEecccc-CcCCcCCcchhhhHHhhHHHHHhh
Q 029008          133 GSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADF-GVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~-~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .     .+.|..+ .+++++|++.+ +++||++||... .....+...|+.+|+++|+++++.
T Consensus        85 ~-----~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~~~~  141 (352)
T 1xgk_A           85 A-----GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQL  141 (352)
T ss_dssp             T-----SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTS
T ss_pred             C-----cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHHHHc
Confidence            2     2457776 89999999999 999999999531 112244578999999999999874

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.87  E-value=5.2e-22  Score=159.08  Aligned_cols=136  Identities=18%  Similarity=0.209  Sum_probs=110.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcc-cccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      +|+|+||||+|++|++++++|+++| ++|++++|++.... ......+++++.+|++|++++.++++++|+|||+++...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~   84 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYWE   84 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCCCc
Confidence            5799999999999999999999999 99999999866521 111134789999999999999999999999999998643


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccc-cCcC-CcCCcchhhhHHhhHHHHHhh
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISAAD-FGVA-NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~-~~~~-~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+  ..+.|+.++.+++++|++.|+++||++|+.. ++.. ..+...|+.+|.++|+++++.
T Consensus        85 ~~--~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  144 (299)
T 2wm3_A           85 SC--SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDI  144 (299)
T ss_dssp             HT--CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             cc--cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCCcccCchhhHHHHHHHHHHHC
Confidence            21  3457888999999999999999999987743 3322 223578999999999999874

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.87  E-value=2.5e-22  Score=155.63  Aligned_cols=139  Identities=17%  Similarity=0.120  Sum_probs=108.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      ++|+++||||+|+||++++++|+++|++|++++|+.+..... ....++.++.+|++|+++++++++       ++|+||
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            567999999999999999999999999999999975432110 011268899999999998887765       689999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .++..+++|+.+++++++.+    ++.+.++||++||.....+.++...|+.+|++.+.+++.
T Consensus        84 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  163 (234)
T 2ehd_A           84 NNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGA  163 (234)
T ss_dssp             ECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCCCCchhhHHHHHHHHHHHH
Confidence            9999542          23457899999998665554    556678999999954334455677999999999988875


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       164 l  164 (234)
T 2ehd_A          164 A  164 (234)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.87  E-value=5.6e-22  Score=157.27  Aligned_cols=141  Identities=15%  Similarity=0.095  Sum_probs=112.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      +.++|+++||||+|+||.+++++|+++|++|++++|+.....+      .....++.++.+|++|+++++++++      
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW  104 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3567899999999999999999999999999999885432111      1124578999999999999988776      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                       ++|++|||||...          .++..+++|+.+++++++++    .+.+.++||++||...-.+.+....|+.+|++
T Consensus       105 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  184 (269)
T 4dmm_A          105 GRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAG  184 (269)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCchhHHHHHHH
Confidence             6899999999642          23567899999999998887    34566799999995433344567889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       185 ~~~l~~~l  192 (269)
T 4dmm_A          185 VIGLTKTV  192 (269)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.87  E-value=2.3e-21  Score=151.75  Aligned_cols=134  Identities=19%  Similarity=0.152  Sum_probs=106.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...      .+..+.+|++|+++++++++       ++|++|
T Consensus        13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   86 (247)
T 1uzm_A           13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK------GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLV   86 (247)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT------TSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH------HhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46789999999999999999999999999999999865421      22248899999999888775       589999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+.+....|+.+|++++.+.+.
T Consensus        87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  166 (247)
T 1uzm_A           87 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARS  166 (247)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCCCChhHHHHHHHHHHHHHH
Confidence            9999642          235678999999999888874    35667999999954333445567899999999998886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       167 l  167 (247)
T 1uzm_A          167 I  167 (247)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.87  E-value=7.4e-22  Score=155.78  Aligned_cols=140  Identities=14%  Similarity=0.098  Sum_probs=106.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHh--------c
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEAL--------D  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~--------~  120 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|++++++++        .
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            457899999999999999999999999999999997543111     011346889999999999888877        4


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|+||||||...          .++..+++|+.++.++++++    ++.+.++||++||...-.+.++...|+.+|+++
T Consensus        92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~  171 (266)
T 1xq1_A           92 KLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGAL  171 (266)
T ss_dssp             CCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCCCCchHHHHHHHH
Confidence            6899999999532          22456899999999998888    456778999999954333445667899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+++..
T Consensus       172 ~~~~~~l  178 (266)
T 1xq1_A          172 NQLARNL  178 (266)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.87  E-value=5.3e-22  Score=158.10  Aligned_cols=140  Identities=16%  Similarity=0.096  Sum_probs=113.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  106 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK  106 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            567899999999999999999999999999999998544211  1114578999999999999888775       6899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .++..+++|+.+++++.+++.+    .+.++||++||...-.+.++...|+.+|++++.+.
T Consensus       107 lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~  186 (277)
T 3gvc_A          107 LVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLS  186 (277)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCchhHHHHHHHHHHHH
Confidence            999999642          2356789999999998888743    55679999999654445566789999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       187 ~~l  189 (277)
T 3gvc_A          187 RIT  189 (277)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            853

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.87  E-value=3.3e-22  Score=156.28  Aligned_cols=130  Identities=12%  Similarity=0.023  Sum_probs=106.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc----CCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~vi~~ag~  131 (200)
                      ||+|+||||+|+||++++++|+++|++|++++|+.+....        .+.+|++|+++++++++    ++|+||||||.
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA--------DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc--------cccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            4689999999999999999999999999999998654211        16789999999998886    89999999996


Q ss_pred             CC---CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEecc-ccCcC-------------------------CcCCcc
Q 029008          132 FG---SNSYMYKINGTANINAIRAASEK----GVKRFVYISAA-DFGVA-------------------------NYLLQG  178 (200)
Q Consensus       132 ~~---~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~-~~~~~-------------------------~~~~~~  178 (200)
                      ..   .++..+++|+.++.++++++.+.    +.++||++||. .++..                         ..+...
T Consensus        73 ~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
T 2dkn_A           73 GVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQTHLA  152 (255)
T ss_dssp             CTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHHHCCHHHH
T ss_pred             CCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccccCCcchh
Confidence            43   45678999999999999987654    56899999994 44332                         135568


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |+.+|+++|.+++..
T Consensus       153 Y~~sK~a~~~~~~~~  167 (255)
T 2dkn_A          153 YAGSKYAVTCLARRN  167 (255)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.87  E-value=3.2e-22  Score=156.75  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=113.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   83 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDI   83 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            467899999999999999999999999999999998644211  1114578999999999999988876       6899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcC-CCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKG-VKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||||...          .++..+++|+.+++++.+++    ++.+ .++||++||...-.+.+....|+.+|++++.+
T Consensus        84 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~  163 (247)
T 3rwb_A           84 LVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGF  163 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCchhhHHHHHHHHHH
Confidence            999999642          23567899999999998884    4555 57999999964344556678999999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       164 ~~~l  167 (247)
T 3rwb_A          164 TRAL  167 (247)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.87  E-value=8e-22  Score=153.15  Aligned_cols=132  Identities=19%  Similarity=0.169  Sum_probs=107.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc------CCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD------GVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d~vi~~  128 (200)
                      ++|+++||||+|+||.+++++|+++|++|++++|+.+       ..++.++.+|++|+++++++++      ++|++|||
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~   73 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-------GEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSA   73 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-------SSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-------ccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEc
Confidence            3579999999999999999999999999999999865       1345899999999999998887      78999999


Q ss_pred             cccCC--------------CCcccchhhHHHHHHHHHHHHHcC----------CCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          129 VGGFG--------------SNSYMYKINGTANINAIRAASEKG----------VKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       129 ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~----------~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      ||...              .++..+++|+.++.++++++.+..          .++||++||.....+.++...|+.+|+
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~  153 (242)
T 1uay_A           74 AGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKG  153 (242)
T ss_dssp             CCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHHHHHHHH
T ss_pred             ccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCchhhHHHH
Confidence            99542              234567899999999999886531          128999999543334456789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +.|.+++..
T Consensus       154 a~~~~~~~l  162 (242)
T 1uay_A          154 GVVALTLPA  162 (242)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988763

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.87  E-value=5e-22  Score=156.60  Aligned_cols=139  Identities=16%  Similarity=0.079  Sum_probs=110.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEe-ecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||+|+||++++++|+++|++|+++ .|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999987 665432111     1123578999999999999888775       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+.++...|+.||++++
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~  162 (258)
T 3oid_A           83 LDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALE  162 (258)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCCcHHHHHHHHHHH
Confidence            799999998532          23457899999999998887    3445679999999644445566789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       163 ~l~~~l  168 (258)
T 3oid_A          163 ALTRYL  168 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.87  E-value=1.2e-21  Score=153.84  Aligned_cols=140  Identities=16%  Similarity=0.143  Sum_probs=112.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccC--CCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNL--LSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl--~d~~~~~~~~~-----  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|+  +|+++++++++     
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            568899999999999999999999999999999998644211      11123788999999  89988887765     


Q ss_pred             --CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 --GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 --~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                        ++|++|||||...           .++..+++|+.+++++++++    ++.+.++||++||...-.+.+....|+.+|
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  169 (252)
T 3f1l_A           90 YPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASK  169 (252)
T ss_dssp             CSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCCCchhHHHH
Confidence              6899999999632           12457899999999998887    445667999999965444556678999999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+.+..
T Consensus       170 ~a~~~l~~~l  179 (252)
T 3f1l_A          170 FATEGMMQVL  179 (252)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988864

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.87  E-value=7.9e-22  Score=152.71  Aligned_cols=138  Identities=14%  Similarity=0.119  Sum_probs=110.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhcCC----CEEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGV----TAVISCV  129 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~----d~vi~~a  129 (200)
                      ||+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++.+    |++||||
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A   80 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA   80 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence            5789999999999999999999999999999998654211  122457889999999999999998764    9999999


Q ss_pred             ccCC----------CCcccchhhHHHHHHHHHHHHHcC---CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          130 GGFG----------SNSYMYKINGTANINAIRAASEKG---VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       130 g~~~----------~~~~~~~~n~~~~~~~~~~a~~~~---~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...          .++..+++|+.+++++++++.+..   ..+||++||.....+.+....|+.+|++++.+.+..
T Consensus        81 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~l  157 (230)
T 3guy_A           81 GSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESV  157 (230)
T ss_dssp             CCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCCCCchhHHHHHHHHHHHHHH
Confidence            9542          234578999999999999886542   229999999654455667789999999999998864

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.87  E-value=1.1e-21  Score=153.65  Aligned_cols=139  Identities=16%  Similarity=0.048  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+...+   .  ....++.++.+|++|+++++++++       +
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   84 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG   84 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999997543111   0  113478899999999999888775       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||...          .++..+++|+.+++++.+++.    +.+ ++||++||.....+.+....|+.+|++++
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~  163 (247)
T 2jah_A           85 LDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVRNAAVYQATKFGVN  163 (247)
T ss_dssp             CSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCCCCCcHHHHHHHHHH
Confidence            899999999642          234578999999999888874    345 79999999643344556778999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       164 ~~~~~l  169 (247)
T 2jah_A          164 AFSETL  169 (247)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988763

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.86  E-value=1e-21  Score=154.95  Aligned_cols=140  Identities=19%  Similarity=0.130  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~   89 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDL   89 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            356899999999999999999999999999999997543211  1112367899999999999998876       7999


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ||||||...          .++..+++|+.+++++.+++.+    .+ .++||++||...-.+.++...|+.+|++++.+
T Consensus        90 lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~  169 (263)
T 3ak4_A           90 LCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGW  169 (263)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCchhHHHHHHHHHHH
Confidence            999999642          2345789999999998888754    34 57999999954334445677899999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      ++..
T Consensus       170 ~~~l  173 (263)
T 3ak4_A          170 TQAL  173 (263)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.86  E-value=6.1e-22  Score=155.26  Aligned_cols=137  Identities=18%  Similarity=0.105  Sum_probs=110.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~  127 (200)
                      |+++||||+|+||++++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|++||
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            579999999999999999999999999999997543211  1112478899999999999998876       5899999


Q ss_pred             ccccCC-----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          128 CVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       128 ~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      |||...           .++..+++|+.+++++.+++.    +.+.++||++||.....+.++...|+.+|++++.+.+.
T Consensus        81 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~  160 (248)
T 3asu_A           81 NAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN  160 (248)
T ss_dssp             CCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCCCCchHHHHHHHHHHHHHH
Confidence            999642           234578999999998888875    45678999999964444455678999999999999886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       161 l  161 (248)
T 3asu_A          161 L  161 (248)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.86  E-value=1.6e-21  Score=154.92  Aligned_cols=141  Identities=14%  Similarity=0.071  Sum_probs=112.4

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--c--ccCCCCeeEEEccCCCHHHHHHHhc------CC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--R--DSWANNVIWHQGNLLSSDSWKEALD------GV  122 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~--~~~~~~~~~~~~Dl~d~~~~~~~~~------~~  122 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|......  .  .....++.++.+|++|+++++++.+      ++
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~i  107 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRV  107 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            356789999999999999999999999999999997532110  0  1123578999999999998887654      69


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+.++...|+.+|++++.
T Consensus       108 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~  187 (273)
T 3uf0_A          108 DVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVG  187 (273)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCCChhHHHHHHHHHH
Confidence            99999999643          23567899999999998877    44567799999996544455667899999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       188 l~~~l  192 (273)
T 3uf0_A          188 LTRAL  192 (273)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.86  E-value=7e-22  Score=156.39  Aligned_cols=139  Identities=13%  Similarity=0.036  Sum_probs=111.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       ++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            56899999999999999999999999999999998643211     1123578899999999999888775       68


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||||...          .++..+++|+.+++++.+++.    +.+.++||++||...-.+.+....|++||++++.
T Consensus        83 D~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~  162 (264)
T 3tfo_A           83 DVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRA  162 (264)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCCChhHHHHHHHHHH
Confidence            99999999642          235678999999998887764    4466799999996544455667889999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       163 l~~~l  167 (264)
T 3tfo_A          163 ISDGL  167 (264)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88763

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.86  E-value=1.1e-21  Score=152.91  Aligned_cols=140  Identities=15%  Similarity=0.031  Sum_probs=111.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD---GVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~a  129 (200)
                      ..+++++||||+|+||++++++|+++|++|++++|+.++..+. ....+++++.+|++|+++++++++   ++|+|||||
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A   84 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECC
Confidence            4578999999999999999999999999999999975432110 011356788999999999999886   489999999


Q ss_pred             ccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          130 GGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       130 g~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...          .++..+++|+.++.++++++.+    .+ .++||++||.....+.++...|+.+|+++|.+++..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l  163 (244)
T 3d3w_A           85 AVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVM  163 (244)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCCCCchHHHHHHHHHHHHHHH
Confidence            9642          1345789999999988888754    35 679999999543344556788999999999998864

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.86  E-value=6.1e-22  Score=155.67  Aligned_cols=141  Identities=13%  Similarity=-0.007  Sum_probs=114.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..++|+++||||+++||+++++.|+++|++|++.+|+.+...+     .....++.++.+|++|+++++++++       
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            4678999999999999999999999999999999998654211     1124578999999999999988765       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----H-cCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----E-KGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~-~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      ++|++|||||...          +|+..+++|+.+++.+.+++.    + .+..+||++||...-.+.+....|+++|++
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaa  165 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGG  165 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHHHHHHH
Confidence            5899999999532          456788999999998888763    2 345699999996544555667889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +..+.+..
T Consensus       166 l~~ltr~l  173 (255)
T 4g81_D          166 IKMLTCSM  173 (255)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988863

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.86  E-value=7.5e-22  Score=154.40  Aligned_cols=138  Identities=13%  Similarity=0.054  Sum_probs=109.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~  127 (200)
                      .+|+++||||+|+||++++++|+++|++|++++|+.++..+.....++.++.+|++|+++++++++       ++|++||
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            568999999999999999999999999999999975432111111137889999999999888775       4899999


Q ss_pred             ccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          128 CVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       128 ~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |||...          .++..+++|+.+++++.+++.+    .+.++||++||.. ..+.+....|+.+|++++.+.+..
T Consensus        84 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~~~~~Y~asK~a~~~~~~~l  162 (245)
T 1uls_A           84 YAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNLGQANYAASMAGVVGLTRTL  162 (245)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCCCchhHHHHHHHHHHHHHHH
Confidence            999642          2345789999999999888754    3567999999965 344456678999999999888763

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.86  E-value=1.1e-21  Score=154.61  Aligned_cols=140  Identities=16%  Similarity=0.113  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc---C-CCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS---W-ANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~---~-~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+   ..   . ..++.++.+|++|+++++++++      
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            456899999999999999999999999999999997543111   00   0 2278999999999999998886      


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|+||||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.++...|+.+|+++
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  164 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPV  164 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHTHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCchhHHHHHHH
Confidence            5999999999532          23557899999998777665    355678999999954333445667899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       165 ~~~~~~l  171 (260)
T 2z1n_A          165 IGVVRTL  171 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.86  E-value=3.3e-21  Score=154.49  Aligned_cols=140  Identities=13%  Similarity=0.113  Sum_probs=113.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++       
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999998653111      1224578999999999999888775       


Q ss_pred             CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       121 ~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      ++|++|||||...           .++..+++|+.+++++++++.+..  .++||++||...-.+.+....|+.+|++++
T Consensus       125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~  204 (291)
T 3ijr_A          125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNETLIDYSATKGAIV  204 (291)
T ss_dssp             SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCCCChhHHHHHHHHH
Confidence            6899999998542           235678999999999999997652  359999999543334456688999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       205 ~l~~~l  210 (291)
T 3ijr_A          205 AFTRSL  210 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.86  E-value=7.2e-22  Score=157.17  Aligned_cols=140  Identities=18%  Similarity=0.095  Sum_probs=112.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            356899999999999999999999999999999998643211     0113468899999999999888776       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc------CCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK------GVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~------~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|+||||||...          .++..+++|+.+++++++++.+.      +.++||++||...-.+.++...|+.+|++
T Consensus       100 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  179 (277)
T 2rhc_B          100 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHG  179 (277)
T ss_dssp             CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCCCCccHHHHHHH
Confidence            899999999642          23567899999999999987654      56799999996433344566789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       180 ~~~~~~~l  187 (277)
T 2rhc_B          180 VVGFTKAL  187 (277)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988863

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.86  E-value=8.6e-22  Score=154.87  Aligned_cols=139  Identities=19%  Similarity=0.163  Sum_probs=109.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ++|+++||||+|+||++++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       ++
T Consensus         1 m~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            1 MKKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            35799999999999999999999999999999997543111     0113468899999999999988876       79


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |++|||||...          .++..+++|+.+++++.+++.+    .+ .++||++||...-.+.+....|+.+|++++
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~  160 (256)
T 1geg_A           81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVR  160 (256)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCchhHHHHHHHHH
Confidence            99999998532          2345789999999988777643    34 579999999543334455678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       161 ~~~~~l  166 (256)
T 1geg_A          161 GLTQTA  166 (256)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.86  E-value=5.4e-22  Score=156.48  Aligned_cols=140  Identities=13%  Similarity=0.159  Sum_probs=111.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.....+      .....++.++.+|++|+++++++++       
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            357899999999999999999999999999999887543211      1113478999999999999998876       


Q ss_pred             CCCEEEEcccc--CC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEecc-cc-CcCCcCCcchhhh
Q 029008          121 GVTAVISCVGG--FG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DF-GVANYLLQGYYEG  182 (200)
Q Consensus       121 ~~d~vi~~ag~--~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~-~~-~~~~~~~~~Y~~s  182 (200)
                      ++|+||||||.  ..          .++..+++|+.+++++++++    ++.+.++||++||. .+ ..+..+...|+.+
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~Y~as  164 (264)
T 3i4f_A           85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAA  164 (264)
T ss_dssp             CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCCTTCHHHHHH
T ss_pred             CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCCCCCchhHHH
Confidence            78999999993  21          23457899999999999987    56677899999986 44 2334556799999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+++..
T Consensus       165 Kaa~~~~~~~l  175 (264)
T 3i4f_A          165 KVGLVSLTKTV  175 (264)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988863

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.86  E-value=7.3e-22  Score=158.44  Aligned_cols=134  Identities=19%  Similarity=0.212  Sum_probs=108.5

Q ss_pred             eEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC-----CCEEEEcccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG-----VTAVISCVGG  131 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~d~vi~~ag~  131 (200)
                      +|+||||+|+||++++++|+++| ++|++++|......... ..++. +.+|++|++.+++++++     +|+|||+||.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~   78 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVN-LVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC   78 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHH-HHTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhh-cCcce-eccccccHHHHHHHHhccccCCCcEEEECccc
Confidence            58999999999999999999999 99999998765421100 11233 67899999999999975     9999999996


Q ss_pred             CC----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhhc
Q 029008          132 FG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       132 ~~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                      ..    ++...+++|+.++.+++++|.+.++ +||++|| ..|+...          .+.+.|+.+|.++|++++++.
T Consensus        79 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~  155 (310)
T 1eq2_A           79 SSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQIL  155 (310)
T ss_dssp             CCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHHHHHHHHHG
T ss_pred             ccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence            53    3456789999999999999999999 9999999 4555432          346789999999999998753

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.86  E-value=7.2e-22  Score=155.66  Aligned_cols=139  Identities=15%  Similarity=0.147  Sum_probs=110.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC-ccc---cc---CCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS-SLR---DS---WANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~---~~---~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ++|+++||||+|+||++++++|+++|++|++++|+.+. ..+   ..   ...++.++.+|++|+++++++++       
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999987643 111   00   03468899999999999988776       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|++|||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|+++
T Consensus        83 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  162 (260)
T 1x1t_A           83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGV  162 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCCCCchHHHHHHHH
Confidence            6899999999642          234578999999999888874    44667999999954333445678899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       163 ~~~~~~l  169 (260)
T 1x1t_A          163 VGFTKVT  169 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988863

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.86  E-value=2.1e-21  Score=154.50  Aligned_cols=140  Identities=13%  Similarity=0.108  Sum_probs=113.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~------~~  122 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++      ++
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            467899999999999999999999999999999998765322     1124578999999999998888775      68


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |++|||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+..+...|+.||++++.
T Consensus       111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~  190 (275)
T 4imr_A          111 DILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKSVVTAYAATKAAQHN  190 (275)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCchhhHHHHHHHHH
Confidence            99999999532          23557899999999998887    34566799999995433345556679999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       191 l~~~l  195 (275)
T 4imr_A          191 LIQSQ  195 (275)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88864

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.86  E-value=1.2e-21  Score=153.74  Aligned_cols=142  Identities=19%  Similarity=0.200  Sum_probs=110.5

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ....+|+++||||+|+||.+++++|+++|++|++++++......      .....++.++.+|++|.++++++++     
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            34578899999999999999999999999999998854333211      1123578999999999999888776     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                        ++|++|||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.++...|+.+|+
T Consensus        89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  168 (256)
T 3ezl_A           89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKA  168 (256)
T ss_dssp             TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCSCCHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCCCCcccHHHHH
Confidence              6899999999643          23457899999998887776    4556679999999654455567789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +.+.+++..
T Consensus       169 a~~~~~~~l  177 (256)
T 3ezl_A          169 GIHGFTMSL  177 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.86  E-value=5.4e-22  Score=157.54  Aligned_cols=140  Identities=15%  Similarity=0.052  Sum_probs=113.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            567899999999999999999999999999999987543211     1123578999999999999988876       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||...          .++..+++|+.+++++.+++.+    .+.++||++||...-.+.++...|+.+|++++
T Consensus       104 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~~  183 (271)
T 4ibo_A          104 VDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAKGGIK  183 (271)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCchhHHHHHHHHH
Confidence            899999999642          2356789999999998777643    46679999999654455566789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       184 ~l~~~l  189 (271)
T 4ibo_A          184 MLTRAM  189 (271)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.86  E-value=1.4e-21  Score=155.07  Aligned_cols=140  Identities=17%  Similarity=0.068  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHh--------c
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEAL--------D  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~--------~  120 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+     .....++.++.+|++|++++++++        .
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999998543111     011347889999999999988876        4


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|++|||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|+++
T Consensus        99 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  178 (273)
T 1ae1_A           99 KLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAI  178 (273)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCCcchhHHHHHHH
Confidence            6899999999642          234567899999999988873    45667999999954333445678899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       179 ~~~~~~l  185 (273)
T 1ae1_A          179 NQMTKSL  185 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988864

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.86  E-value=5e-22  Score=154.58  Aligned_cols=138  Identities=15%  Similarity=0.073  Sum_probs=109.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      +|+++||||+|+||.+++++|+++|++|++++|+.++..+  .....++.++.+|++|+++++++++       ++|++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            5799999999999999999999999999999998644211  1112368999999999999888775       589999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||||...          .++..+++|+.+++.+++++...   ...+||++||...-.+.+....|+.||++++.+.+..
T Consensus        83 nnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~l  162 (235)
T 3l6e_A           83 HCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESL  162 (235)
T ss_dssp             EECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999632          23567899999999998887542   1239999999543444556678999999999998864

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.86  E-value=1.9e-21  Score=151.54  Aligned_cols=139  Identities=12%  Similarity=0.060  Sum_probs=109.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc---------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD---------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~---------~  121 (200)
                      ++++++||||+|+||.+++++|+++|  ++|++++|+.+....  .....++.++.+|++|+++++++++         +
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            35799999999999999999999999  999999998654211  1113578999999999999988876         8


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc----------C-----CCEEEEEeccccCcCC--
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK----------G-----VKRFVYISAADFGVAN--  173 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~----------~-----~~~~v~vSS~~~~~~~--  173 (200)
                      +|+||||||...           .++..+++|+.+++++++++.+.          +     .++||++||.....+.  
T Consensus        82 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~  161 (250)
T 1yo6_A           82 LSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNT  161 (250)
T ss_dssp             CCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTCC
T ss_pred             CcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCCcc
Confidence            999999999643           12456889999999988886443          4     6799999995321111  


Q ss_pred             -----cCCcchhhhHHhhHHHHHhh
Q 029008          174 -----YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 -----~~~~~Y~~sK~~~E~~~~~~  193 (200)
                           .+...|+.+|++.|.+++..
T Consensus       162 ~~~~~~~~~~Y~~sK~a~~~~~~~l  186 (250)
T 1yo6_A          162 SGSAQFPVLAYRMSKAAINMFGRTL  186 (250)
T ss_dssp             STTSSSCBHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCccHHHHHHHHHHHHHHHH
Confidence                 45678999999999998864

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.86  E-value=2.9e-21  Score=153.34  Aligned_cols=141  Identities=16%  Similarity=0.144  Sum_probs=112.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++++.....+      .....++.++.+|++|+++++++++      
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3567899999999999999999999999999999776533111      1124578899999999999988776      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCc-CCcCCcchhhhHHhh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGV-ANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~-~~~~~~~Y~~sK~~~  186 (200)
                       ++|++|||||...          .++..+++|+.+++++++++.+.  ..++||++||..... +.++...|+.+|+++
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~  187 (271)
T 3v2g_A          108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPWPGISLYSASKAAL  187 (271)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCSTTCHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCCCCchHHHHHHHHH
Confidence             7899999999642          23567899999999999998765  346999999853333 346678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       188 ~~l~~~l  194 (271)
T 3v2g_A          188 AGLTKGL  194 (271)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.86  E-value=1.3e-21  Score=151.86  Aligned_cols=139  Identities=15%  Similarity=0.064  Sum_probs=111.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||+|+||.+++++|+++|++|++++|+.++..+      .....++.++.+|++|+++++++++       +
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            36899999999999999999999999999999998643211      1224578999999999999998887       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      +|++|||||...          .++..+++|+.+++++++++.+.   +.+++|++||.....+.+....|+.+|++.+.
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~~~  160 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIPYGGGYVSTKWAARA  160 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCCCcchHHHHHHHHHH
Confidence            899999999642          23457899999999999887542   34578888885544555566789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       161 ~~~~l  165 (235)
T 3l77_A          161 LVRTF  165 (235)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.86  E-value=1.9e-21  Score=153.95  Aligned_cols=134  Identities=18%  Similarity=0.067  Sum_probs=109.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...      ....+.+|++|.++++++++       ++|++|
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~------~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lv   99 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA------ADLHLPGDLREAAYADGLPGAVAAGLGRLDIVV   99 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC------CSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH------hhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            46789999999999999999999999999999999765432      12445889999988877664       689999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+.++...|+.||++++.+.+.
T Consensus       100 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~  179 (266)
T 3uxy_A          100 NNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQC  179 (266)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTTBHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence            9999643          23457889999999999887    555677999999964444556678899999999999886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       180 l  180 (266)
T 3uxy_A          180 M  180 (266)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.86  E-value=6.2e-22  Score=157.77  Aligned_cols=140  Identities=17%  Similarity=0.238  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccC---CCCeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSW---ANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~---~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+     ...   ..++.++.+|++|+++++++++     
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999998643111     011   1268899999999999888775     


Q ss_pred             --CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 --GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 --~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                        ++|++|||||...           .++..+++|+.+++++++++.+    .+..+||++||...-.+.++...|+.||
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  168 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTK  168 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTCTHHHHHH
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCCChhHHHHH
Confidence              6899999999621           2355789999999999888754    3445999999954334455678999999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       169 ~a~~~l~~~l  178 (281)
T 3svt_A          169 SAVDHLMQLA  178 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.86  E-value=5.4e-21  Score=156.76  Aligned_cols=141  Identities=12%  Similarity=0.113  Sum_probs=113.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------------ccCCCCeeEEEccCCCHHHHHHHhc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------------DSWANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.++...            .....++.++.+|++|+++++++++
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence            3568899999999999999999999999999999998764211            1123578899999999999988776


Q ss_pred             -------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcC--CcCCc
Q 029008          121 -------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVA--NYLLQ  177 (200)
Q Consensus       121 -------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~--~~~~~  177 (200)
                             ++|+||||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+  .+...
T Consensus       122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~~~~~  201 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHC  201 (346)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGGTSSSH
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCCCCCch
Confidence                   7899999999642          235678999999999999884    445679999999532222  45677


Q ss_pred             chhhhHHhhHHHHHhh
Q 029008          178 GYYEGKDSNLSPLLAC  193 (200)
Q Consensus       178 ~Y~~sK~~~E~~~~~~  193 (200)
                      .|+.+|++++.+++..
T Consensus       202 ~Y~aSKaal~~l~~~l  217 (346)
T 3kvo_A          202 AYTIAKYGMSMYVLGM  217 (346)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999999999988864

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.86  E-value=5.1e-22  Score=156.29  Aligned_cols=139  Identities=18%  Similarity=0.215  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc------CCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD------GVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d~vi~  127 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+ ....++.++.+|++|+++++++++      ++|++||
T Consensus         7 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv~   85 (257)
T 3tl3_A            7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVA-DLGDRARFAAADVTDEAAVASALDLAETMGTLRIVVN   85 (257)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHH-HTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             ecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHH-hcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            467899999999999999999999999999999996443222 224679999999999999988876      7999999


Q ss_pred             ccccCC--------------CCcccchhhHHHHHHHHHHHHHc------------CCCEEEEEeccccCcCCcCCcchhh
Q 029008          128 CVGGFG--------------SNSYMYKINGTANINAIRAASEK------------GVKRFVYISAADFGVANYLLQGYYE  181 (200)
Q Consensus       128 ~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~------------~~~~~v~vSS~~~~~~~~~~~~Y~~  181 (200)
                      |||...              .++..+++|+.+++++++++...            +..+||++||...-.+.++...|+.
T Consensus        86 nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  165 (257)
T 3tl3_A           86 CAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSA  165 (257)
T ss_dssp             CGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHHHHHHHH
T ss_pred             CCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCCCccHHH
Confidence            999531              24567899999999999988643            3348999999643344455678999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      ||++++.+.+..
T Consensus       166 sKaa~~~~~~~l  177 (257)
T 3tl3_A          166 SKGGVVGMTLPI  177 (257)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988763

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.86  E-value=2.1e-21  Score=154.28  Aligned_cols=140  Identities=13%  Similarity=0.088  Sum_probs=109.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-----cCCCCeeEEEccCCCHHHHHHHhcC-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-----SWANNVIWHQGNLLSSDSWKEALDG-------  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~-------  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+.....     ....++.++.+|++|+++++++++.       
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999999999986542110     1134788999999999999887763       


Q ss_pred             CCEEEEccccCCC------------CcccchhhHHHHH----HHHHHHHHcCCCEEEEEeccccCcC--CcCCcchhhhH
Q 029008          122 VTAVISCVGGFGS------------NSYMYKINGTANI----NAIRAASEKGVKRFVYISAADFGVA--NYLLQGYYEGK  183 (200)
Q Consensus       122 ~d~vi~~ag~~~~------------~~~~~~~n~~~~~----~~~~~a~~~~~~~~v~vSS~~~~~~--~~~~~~Y~~sK  183 (200)
                      +|+||||||....            ++..+++|+.+++    .+++.+++.+.++||++||.....+  .++...|+.+|
T Consensus       112 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sK  191 (279)
T 3ctm_A          112 IDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAK  191 (279)
T ss_dssp             CSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---CCHHHHHHHH
T ss_pred             CCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCCCCCCcccHHHHH
Confidence            8999999996432            1346789999955    5566666677889999999543233  45567899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      +++|.+++..
T Consensus       192 ~a~~~~~~~l  201 (279)
T 3ctm_A          192 AACTHLAKSL  201 (279)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.86  E-value=2.5e-21  Score=153.10  Aligned_cols=141  Identities=12%  Similarity=0.056  Sum_probs=113.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------c-cCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~-~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.+...+      . ....++.++.+|++|+++++++++     
T Consensus         5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999998643211      1 112358999999999999887765     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                        ++|++|||||...          .++..+++|+.+++++.+++..    .+..+||++||.....+.+....|+.+|+
T Consensus        85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  164 (265)
T 3lf2_A           85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARA  164 (265)
T ss_dssp             HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTTBHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCCCchhhHHHHH
Confidence              6899999999642          2356789999999999988754    34568999999654455566789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       165 a~~~l~~~l  173 (265)
T 3lf2_A          165 GVKNLVRSM  173 (265)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.86  E-value=1.6e-21  Score=155.52  Aligned_cols=140  Identities=14%  Similarity=0.107  Sum_probs=112.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999998643111     1123578999999999999988776       6


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccc-cCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD-FGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~-~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||||...           .++..+++|+.+++++.+++.    +.+.++||++||.. +..+.++...|+.||++
T Consensus        86 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa  165 (280)
T 3tox_A           86 LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAG  165 (280)
T ss_dssp             CCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCTTCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCCCchhHHHHHHH
Confidence            899999999642           235678999999999888874    34566999999953 33455667889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       166 ~~~l~~~l  173 (280)
T 3tox_A          166 LIGLVQAL  173 (280)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.86  E-value=1.6e-21  Score=153.21  Aligned_cols=140  Identities=14%  Similarity=0.073  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999997543111     0113478999999999999988875       6


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCc--CCcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGV--ANYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~--~~~~~~~Y~~sK~  184 (200)
                      +|+||||||...           .++..+++|+.++.++++++.+    .+.++||++||.....  +..+...|+.+|+
T Consensus        91 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~Y~~sK~  170 (260)
T 3awd_A           91 VDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKA  170 (260)
T ss_dssp             CCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCCHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCCCCccccHHHHH
Confidence            899999999643           1245689999999999888754    4677999999953222  2233378999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      ++|.+++..
T Consensus       171 a~~~~~~~l  179 (260)
T 3awd_A          171 GVHQYIRSL  179 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.86  E-value=1.7e-21  Score=152.86  Aligned_cols=140  Identities=18%  Similarity=0.100  Sum_probs=110.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCc-EEEeecCCCCcc-c---cc-CCCCeeEEEccCCCH-HHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSL-R---DS-WANNVIWHQGNLLSS-DSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~-~---~~-~~~~~~~~~~Dl~d~-~~~~~~~~------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++ |++++|+..... +   .. ...++.++.+|++|+ ++++++++      
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            35689999999999999999999999997 999998764211 1   01 124688999999998 88877665      


Q ss_pred             -CCCEEEEccccC--CCCcccchhhHHHHHHHHHHHHHc----C---CCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          121 -GVTAVISCVGGF--GSNSYMYKINGTANINAIRAASEK----G---VKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       121 -~~d~vi~~ag~~--~~~~~~~~~n~~~~~~~~~~a~~~----~---~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                       ++|+||||||..  +.++..+++|+.++.++++++.+.    +   .++||++||...-.+.+....|+.+|+++|.++
T Consensus        83 g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  162 (254)
T 1sby_A           83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFT  162 (254)
T ss_dssp             SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCCchHHHHHHHHHHHHH
Confidence             789999999964  355678999999999999988543    1   358999999543344556778999999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       163 ~~l  165 (254)
T 1sby_A          163 NSL  165 (254)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.86  E-value=6.1e-22  Score=157.24  Aligned_cols=139  Identities=19%  Similarity=0.210  Sum_probs=109.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeec-CCCCccc---c---cCCCCeeEEEccCCCH----HHHHHHhc---
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSR-SGRSSLR---D---SWANNVIWHQGNLLSS----DSWKEALD---  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~---~---~~~~~~~~~~~Dl~d~----~~~~~~~~---  120 (200)
                      .+|+++||||+|+||.+++++|+++|++|++++| +.+...+   .   ....++.++.+|++|+    ++++++++   
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999 5432111   0   0135789999999999    88888775   


Q ss_pred             ----CCCEEEEccccCC---------------------CCcccchhhHHHHHHHHHHHHHc---CC------CEEEEEec
Q 029008          121 ----GVTAVISCVGGFG---------------------SNSYMYKINGTANINAIRAASEK---GV------KRFVYISA  166 (200)
Q Consensus       121 ----~~d~vi~~ag~~~---------------------~~~~~~~~n~~~~~~~~~~a~~~---~~------~~~v~vSS  166 (200)
                          ++|+||||||...                     .++..+++|+.+++++++++.+.   +.      ++||++||
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~isS  169 (276)
T 1mxh_A           90 RAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD  169 (276)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECC
T ss_pred             HhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEECc
Confidence                6899999999532                     12356899999999999998774   33      79999999


Q ss_pred             cccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          167 ADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       167 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...-.+.++...|+.+|++++.+.+..
T Consensus       170 ~~~~~~~~~~~~Y~asK~a~~~l~~~l  196 (276)
T 1mxh_A          170 AMTDLPLPGFCVYTMAKHALGGLTRAA  196 (276)
T ss_dssp             GGGGSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCCCeehHHHHHHHHHHHHHH
Confidence            543344556778999999999988863

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.86  E-value=1.8e-21  Score=154.60  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=101.5

Q ss_pred             eEEEEccCchhHHHHHHHHHHC--CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSN  135 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~  135 (200)
                      +|+||||+|+||++++++|+++  |++|++++|+.++... ....+++++.+|++|++++.++++++|+|||++|...  
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~--   77 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA-LAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEV--   77 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH-HHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh-hhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCc--
Confidence            5899999999999999999999  9999999998654321 1124688999999999999999999999999998631  


Q ss_pred             cccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          136 SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                          ..|+.++.+++++|++.++++||++||....   .....|+.+|.++|+++++.
T Consensus        78 ----~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~---~~~~~y~~sK~~~e~~~~~~  128 (286)
T 2zcu_A           78 ----GQRAPQHRNVINAAKAAGVKFIAYTSLLHAD---TSPLGLADEHIETEKMLADS  128 (286)
T ss_dssp             --------CHHHHHHHHHHHHTCCEEEEEEETTTT---TCCSTTHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC---CCcchhHHHHHHHHHHHHHc
Confidence                2578899999999999999999999995321   22358999999999999874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.86  E-value=3.1e-21  Score=152.38  Aligned_cols=140  Identities=18%  Similarity=0.063  Sum_probs=112.7

Q ss_pred             CCCCeEEEEccCc-hhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNG-FVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+|+++||||+| +||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++      
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            4678999999987 79999999999999999999998643211      1123579999999999999988775      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc-----CCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK-----GVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~-----~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                       ++|+||||||...          .++..+++|+.+++++++++...     +.++||++||...-.+.++...|+.+|+
T Consensus       100 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sKa  179 (266)
T 3o38_A          100 GRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKA  179 (266)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTTCHHHHHHHH
T ss_pred             CCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCCCchHHHHHH
Confidence             6899999999642          23457899999999999887553     4568999999654455567789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +.+.+++..
T Consensus       180 a~~~~~~~l  188 (266)
T 3o38_A          180 GVMALTRCS  188 (266)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998863

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.86  E-value=2.3e-21  Score=154.64  Aligned_cols=140  Identities=14%  Similarity=0.074  Sum_probs=111.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++       
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999999998643111      1123478899999999998887764       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCc-CCcchhhhHHhhH
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANY-LLQGYYEGKDSNL  187 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~-~~~~Y~~sK~~~E  187 (200)
                      ++|+||||||...          .++..+++|+.+++++++++.+.  +.++||++||.....+.. +...|+.+|++++
T Consensus       107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~  186 (283)
T 1g0o_A          107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIE  186 (283)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCSSCHHHHHHHHHHH
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCCCCCcchHHHHHHHH
Confidence            6899999999642          23457899999999999999876  567999999953222333 3678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       187 ~~~~~l  192 (283)
T 1g0o_A          187 TFARCM  192 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998863

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.86  E-value=6.1e-21  Score=151.61  Aligned_cols=140  Identities=14%  Similarity=0.117  Sum_probs=111.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------------ccCCCCeeEEEccCCCHHHHHHHhc-
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------------DSWANNVIWHQGNLLSSDSWKEALD-  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~Dl~d~~~~~~~~~-  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+....            .....++.++.+|++|+++++++++ 
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999999999999999999999998654211            0113578899999999999888775 


Q ss_pred             ------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcC--CcCCcc
Q 029008          121 ------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVA--NYLLQG  178 (200)
Q Consensus       121 ------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~--~~~~~~  178 (200)
                            ++|++|||||...          .++..+++|+.+++++.+++..    .+.++||++||...-.+  .+....
T Consensus        84 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~  163 (274)
T 3e03_A           84 TVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTG  163 (274)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHHHHCHH
T ss_pred             HHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCCCCch
Confidence                  6899999999642          2355789999999999888743    45679999999532222  345678


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |+.||++++.+.+..
T Consensus       164 Y~asKaal~~l~~~l  178 (274)
T 3e03_A          164 YTLAKMGMSLVTLGL  178 (274)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988864

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.86  E-value=1.3e-21  Score=156.10  Aligned_cols=140  Identities=14%  Similarity=0.147  Sum_probs=106.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.....+      .....++.++.+|++|+++++++++       
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999999975432111      1123578999999999999888776       


Q ss_pred             CCCEEEEccccCC------------CCcccchhhHHHHHHHHHHHHHc----C---CCEEEEEeccccCcCCcCCcchhh
Q 029008          121 GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASEK----G---VKRFVYISAADFGVANYLLQGYYE  181 (200)
Q Consensus       121 ~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~~----~---~~~~v~vSS~~~~~~~~~~~~Y~~  181 (200)
                      ++|++|||||...            .++..+++|+.+++++++++.+.    +   .++||++||...-.+.+....|+.
T Consensus       107 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~a  186 (280)
T 4da9_A          107 RIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCM  186 (280)
T ss_dssp             CCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------CCHHHHH
T ss_pred             CCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCCccHHHH
Confidence            7899999999621            23567899999999888887433    2   458999999644445566788999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|++++.+.+..
T Consensus       187 sKaa~~~l~~~l  198 (280)
T 4da9_A          187 SKAGLAAFSQGL  198 (280)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988864

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.86  E-value=9.5e-22  Score=155.62  Aligned_cols=140  Identities=14%  Similarity=0.069  Sum_probs=112.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++       
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999997543211      1124578999999999999888775       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      ++|++|||||...          .++..+++|+.+++++.+++.+    .+ .++||++||...-.+.+....|+.+|++
T Consensus        98 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  177 (266)
T 4egf_A           98 GLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAG  177 (266)
T ss_dssp             SCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCCChHHHHHHHH
Confidence            6899999999643          2355789999999998888743    33 4599999996544455667899999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       178 ~~~l~~~l  185 (266)
T 4egf_A          178 LVMATKVL  185 (266)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988864

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.86  E-value=1.8e-21  Score=154.64  Aligned_cols=140  Identities=13%  Similarity=0.060  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            357899999999999999999999999999999998544211  1113578999999999999998876       7999


Q ss_pred             EEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----cC--CCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          125 VISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KG--VKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       125 vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|||||...           .++..+++|+.+++++.+++.+    .+  .++||++||...-.+.++...|+.+|++++
T Consensus       106 lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~  185 (272)
T 4dyv_A          106 LFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAIT  185 (272)
T ss_dssp             EEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTCHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCchHHHHHHHHHH
Confidence            999999642           1245789999999988887643    33  459999999654455566788999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       186 ~l~~~l  191 (272)
T 4dyv_A          186 GLTKST  191 (272)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.86  E-value=7.4e-22  Score=156.05  Aligned_cols=139  Identities=10%  Similarity=0.067  Sum_probs=112.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999997543211     1124578999999999999988775       6


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||||...           .++..+++|+.+++++++++..    .+ ++||++||.....+.+....|+.+|+++
T Consensus        89 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa~  167 (264)
T 3ucx_A           89 VDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQAKYGAYKMAKSAL  167 (264)
T ss_dssp             CSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCCTTCHHHHHHHHHH
T ss_pred             CcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCCCccHHHHHHHHHH
Confidence            899999998642           2345789999999999888643    33 6999999965445556678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       168 ~~~~~~l  174 (264)
T 3ucx_A          168 LAMSQTL  174 (264)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.86  E-value=1.8e-21  Score=153.53  Aligned_cols=140  Identities=15%  Similarity=0.017  Sum_probs=112.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999999999999998654211     1123578999999999999888775       4


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|+||||||...           .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|++.
T Consensus       107 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  186 (262)
T 3rkr_A          107 CDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGL  186 (262)
T ss_dssp             CSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCTTCHHHHHHHHHH
T ss_pred             CCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCchHHHHHHHH
Confidence            899999999621           234578999999999888864    45677999999965445556678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       187 ~~l~~~l  193 (262)
T 3rkr_A          187 NGLMTSA  193 (262)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988864

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.86  E-value=5.9e-22  Score=154.54  Aligned_cols=140  Identities=20%  Similarity=0.148  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc---CCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS---WANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~---~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+....   ..   ...++.++.+|++|+++++++++       
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            356899999999999999999999999999999997543111   00   13578899999999999998876       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|+||||||...          .++..+++|+.++.++++++    ++.+.++||++||...-.+.++...|+.+|++.
T Consensus        85 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~  164 (248)
T 2pnf_A           85 GIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGL  164 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCCCCchHHHHHHHH
Confidence            7999999999643          12457899999998777665    445678999999953222334567899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+++..
T Consensus       165 ~~~~~~l  171 (248)
T 2pnf_A          165 IGFTKSL  171 (248)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988763

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.86  E-value=1.6e-21  Score=152.31  Aligned_cols=142  Identities=16%  Similarity=0.073  Sum_probs=115.2

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc--CCCEEE
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD--GVTAVI  126 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi  126 (200)
                      +..++|+++||||+++||+++++.|+++|++|++.+|+..+...   .....++.++.+|++|++.++++++  ++|++|
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            45689999999999999999999999999999999998643211   2234578999999999998888775  589999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ||||...          +|+..+++|+.+++.+.+++.    +++ ..+||++||...-.+.+....|++||+++..+.+
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~~~Y~asKaav~~ltr  164 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRVPSYTAAKHGVAGLTK  164 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCChHHHHHHHHHHHHHH
Confidence            9999532          467789999999998888753    344 4699999996544555667789999999999988


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       165 ~l  166 (247)
T 4hp8_A          165 LL  166 (247)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.86  E-value=1.3e-21  Score=155.24  Aligned_cols=141  Identities=12%  Similarity=0.045  Sum_probs=110.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            3567899999999999999999999999999999997543211     0113478999999999999888775       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|+||||||...          .++..+++|+.++.++++++.    +.+.++||++||...-.+.++...|+.+|+++
T Consensus       108 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~  187 (272)
T 1yb1_A          108 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAA  187 (272)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCchhHHHHHHHH
Confidence            6899999999643          124578999999888777763    45678999999954333344567899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+++..
T Consensus       188 ~~l~~~l  194 (272)
T 1yb1_A          188 VGFHKTL  194 (272)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988864

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.86  E-value=1.7e-21  Score=151.78  Aligned_cols=134  Identities=21%  Similarity=0.202  Sum_probs=106.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~~  128 (200)
                      +|+++||||+|+||++++++|+++|++|++++|+.++..+..   ++.++.+|++| ++++++++       ++|++|||
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv~~   77 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL---GAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHA   77 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH---TCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhh---CcEEEecCCch-HHHHHHHHHHHHHcCCCCEEEEC
Confidence            579999999999999999999999999999999865421111   37889999999 77766553       69999999


Q ss_pred             cccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCC--cCCcchhhhHHhhHHHHHh
Q 029008          129 VGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVAN--YLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       129 ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~--~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||...          .++..+++|+.+++++.+++.    +.+.++||++||...-.+.  ++...|+.+|++++.+.+.
T Consensus        78 Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~  157 (239)
T 2ekp_A           78 AAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRA  157 (239)
T ss_dssp             CCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCCCCCccHHHHHHHHHHHHHH
Confidence            99532          235678999999998888873    4567899999995322223  5677899999999998876


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       158 l  158 (239)
T 2ekp_A          158 L  158 (239)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.86  E-value=1e-20  Score=150.73  Aligned_cols=130  Identities=18%  Similarity=0.144  Sum_probs=103.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSN  135 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~  135 (200)
                      |+|+||||+|+||++++++|+++ |++|++++|+.++.. .....+++++.+|++|++++.++++++|+||||+|.... 
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~-~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~-   78 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVP-DDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHP-   78 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC-GGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCS-
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHH-HhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCcc-
Confidence            47999999999999999999998 999999999876532 223468999999999999999999999999999987542 


Q ss_pred             cccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          136 SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                         ...|+.++.+++++|++.|+++||++||.  +........+...+..+|+.+++.
T Consensus        79 ---~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~--~~~~~~~~~~~~~~~~~e~~~~~~  131 (289)
T 3e48_A           79 ---SFKRIPEVENLVYAAKQSGVAHIIFIGYY--ADQHNNPFHMSPYFGYASRLLSTS  131 (289)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCCEEEEEEES--CCSTTCCSTTHHHHHHHHHHHHHH
T ss_pred             ---chhhHHHHHHHHHHHHHcCCCEEEEEccc--CCCCCCCCccchhHHHHHHHHHHc
Confidence               24588999999999999999999999994  322222223334445677776654

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.86  E-value=2.1e-21  Score=151.62  Aligned_cols=134  Identities=17%  Similarity=0.148  Sum_probs=111.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHH-CCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-----CCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d~vi~~  128 (200)
                      ++|+++||||+|+||++++++|++ .|++|++.+|+.+..     ...+.++.+|++|+++++++++     ++|++|||
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~n   77 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS-----AENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLN   77 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC-----CTTEEEEECCTTCHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc-----cccceEEecCcCCHHHHHHHHHHHHhCCCCEEEEC
Confidence            578999999999999999999999 789999998876532     2467899999999999998876     68999999


Q ss_pred             cccCC----------CCcccchhhHHHHHHHHHHHHHcCC--CEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          129 VGGFG----------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       129 ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~~--~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||...          .++..+++|+.+++++++++.+...  ++||++||.....+.+....|+.||++++.+.+..
T Consensus        78 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~asKaa~~~~~~~l  154 (244)
T 4e4y_A           78 AGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSL  154 (244)
T ss_dssp             CCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCCCCchhHHHHHHHHHHHHHH
Confidence            99642          2356789999999999999876532  48999999654445566778999999999998864

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.86  E-value=8e-22  Score=156.48  Aligned_cols=140  Identities=15%  Similarity=0.032  Sum_probs=112.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999997543211     1113468899999999999988776       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|++++
T Consensus       106 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~  185 (270)
T 3ftp_A          106 LNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVA  185 (270)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCchhHHHHHHHHH
Confidence            899999999642          235678999999999988874    345679999999543344556788999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       186 ~l~~~l  191 (270)
T 3ftp_A          186 GMTRAL  191 (270)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.86  E-value=8.8e-21  Score=152.18  Aligned_cols=140  Identities=15%  Similarity=0.080  Sum_probs=112.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc-cc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-LR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.... .+      .....++.++.+|++|+++++++++      
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4678999999999999999999999999999998863321 10      1124578999999999998887765      


Q ss_pred             -CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHcCC--CEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 -GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 -~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~~~--~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                       ++|++|||||...           .++..+++|+.+++++++++.....  ++||++||...-.+.+....|+.+|+++
T Consensus       127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~  206 (294)
T 3r3s_A          127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAI  206 (294)
T ss_dssp             TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCCCchHHHHHHHHH
Confidence             6899999999632           1355789999999999999977643  3999999964444556678899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       207 ~~l~~~l  213 (294)
T 3r3s_A          207 LNYSRGL  213 (294)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.86  E-value=3.3e-21  Score=153.49  Aligned_cols=140  Identities=14%  Similarity=0.075  Sum_probs=111.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc------------cc------ccCCCCeeEEEccCCCHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------------LR------DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~------~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+....            .+      .....++.++.+|++|++++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            5678999999999999999999999999999999853210            00      11235788999999999999


Q ss_pred             HHHhc-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCC
Q 029008          116 KEALD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVAN  173 (200)
Q Consensus       116 ~~~~~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~-~~~~v~vSS~~~~~~~  173 (200)
                      +++++       ++|++|||||...          .++..+++|+.+++++++++.    +.+ .++||++||...-.+.
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~  172 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKAT  172 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccCC
Confidence            88775       6899999999643          234578899999999988874    333 5689999996544455


Q ss_pred             cCCcchhhhHHhhHHHHHhh
Q 029008          174 YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +....|+.+|++++.+.+..
T Consensus       173 ~~~~~Y~asKaa~~~~~~~l  192 (280)
T 3pgx_A          173 PGNGHYSASKHGLTALTNTL  192 (280)
T ss_dssp             TTBHHHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHH
Confidence            66789999999999988864

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.86  E-value=1.3e-21  Score=152.94  Aligned_cols=139  Identities=14%  Similarity=0.102  Sum_probs=108.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeec-CCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSR-SGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ++|+++||||+|+||++++++|+++|++|++++| +.+...+     .....++.++.+|++|+++++++++       +
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999998 4322110     0113478899999999999988776       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||...          .++..+++|+.+++++.+++.    +.+.++||++||...-.+.++...|+.+|++++
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~  162 (246)
T 2uvd_A           83 VDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVI  162 (246)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTBHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCCCCchHHHHHHHHH
Confidence            999999999642          234578999999887776653    456789999999532233455678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       163 ~~~~~l  168 (246)
T 2uvd_A          163 GLTKTS  168 (246)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987753

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.85  E-value=1.6e-21  Score=151.91  Aligned_cols=137  Identities=12%  Similarity=0.024  Sum_probs=109.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc---
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD---  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~---  120 (200)
                      +|+++||||+|+||.+++++|+++|+       +|++++|+.+....     .....++.++.+|++|+++++++++   
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999       89999997543111     0113468899999999999988776   


Q ss_pred             ----CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 ----GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 ----~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                          ++|+||||||...          .++..+++|+.++.++++++.    +.+.++||++||...-.+.++...|+.+
T Consensus        82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~s  161 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMS  161 (244)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCCCCchhHHH
Confidence                6999999999642          234578999999999888874    3467799999995433445567889999


Q ss_pred             HHhhHHHHHh
Q 029008          183 KDSNLSPLLA  192 (200)
Q Consensus       183 K~~~E~~~~~  192 (200)
                      |++.|.+++.
T Consensus       162 K~a~~~~~~~  171 (244)
T 2bd0_A          162 KFGQRGLVET  171 (244)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998865

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.85  E-value=2.1e-21  Score=154.49  Aligned_cols=140  Identities=16%  Similarity=0.089  Sum_probs=112.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++       
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999998643211      1124578999999999999888775       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|++|||||...          .++..+++|+.+++++.+++..    .+.++||++||...-.+.+....|+.+|+++
T Consensus       105 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  184 (277)
T 4fc7_A          105 RIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAV  184 (277)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCcHHHHHHHHHH
Confidence            6899999999532          2356789999999999988743    3456999999964334455678899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       185 ~~l~~~l  191 (277)
T 4fc7_A          185 DAMTRHL  191 (277)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=7.5e-22  Score=154.91  Aligned_cols=140  Identities=12%  Similarity=0.054  Sum_probs=109.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+      ..  ...++.++.+|++|+++++++++     
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999998643211      00  12578899999999999888775     


Q ss_pred             --CCCEEEEccccCC---------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 --GVTAVISCVGGFG---------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 --~~d~vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                        ++|++|||||...         .++..+++|+.+++.+++++    ++.+.++||++||...-.+..+...|+.+|++
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  164 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFA  164 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------CCTTHHHHHHHH
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCCCCcchHHHHHH
Confidence              5899999999642         23567899999999988887    34566799999995433333447899999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       165 ~~~l~~~l  172 (250)
T 3nyw_A          165 LLGLAESL  172 (250)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988864

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.85  E-value=4.9e-21  Score=152.40  Aligned_cols=140  Identities=14%  Similarity=0.128  Sum_probs=111.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999997654211     1123578899999999999998876       7


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEecccc--CcCCcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADF--GVANYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~--~~~~~~~~~Y~~sK~  184 (200)
                      +|++|||||...          .++..+++|+.+++++++++.+    .+ .++||++||...  +....+...|+.||+
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~asKa  189 (276)
T 3r1i_A          110 IDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKA  189 (276)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSSCCHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCCCcchHHHHHH
Confidence            899999999643          2345678999999999888743    33 268999999532  222345678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       190 a~~~l~~~l  198 (276)
T 3r1i_A          190 AVVHLTKAM  198 (276)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.85  E-value=8.4e-22  Score=155.11  Aligned_cols=140  Identities=19%  Similarity=0.132  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc--CC-------CCeeEEEccCCCHHHHHHHhcC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS--WA-------NNVIWHQGNLLSSDSWKEALDG  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~--~~-------~~~~~~~~Dl~d~~~~~~~~~~  121 (200)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+...+   ..  ..       .++.++.+|++|+++++++++.
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            356899999999999999999999999999999997543111   00  01       4688999999999998887764


Q ss_pred             -------C-CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcc
Q 029008          122 -------V-TAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQG  178 (200)
Q Consensus       122 -------~-d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~~~~~~~~~~  178 (200)
                             + |+||||||...          .++..+++|+.++.++++++.+.    + .++||++||...-.+.++...
T Consensus        85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  164 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTN  164 (264)
T ss_dssp             HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCTTBHH
T ss_pred             HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCCCChh
Confidence                   4 99999999643          23457899999999999887553    4 569999999532234456788


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |+.+|+++|.+++..
T Consensus       165 Y~~sK~a~~~~~~~l  179 (264)
T 2pd6_A          165 YAASKAGVIGLTQTA  179 (264)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999988764

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.85  E-value=3.6e-21  Score=153.11  Aligned_cols=140  Identities=16%  Similarity=0.075  Sum_probs=108.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c-cCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~-~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+   . ....++.++.+|++|+++++++++       ++
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL  106 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            457899999999999999999999999999999997543111   1 111268889999999999888775       68


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCC----CEEEEEeccccCcCCcCCc-chhhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGV----KRFVYISAADFGVANYLLQ-GYYEGK  183 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~----~~~v~vSS~~~~~~~~~~~-~Y~~sK  183 (200)
                      |+||||||...          .++..+++|+.+++++++++.    +.+.    ++||++||...-.+.+... .|+.+|
T Consensus       107 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~~~~~Y~asK  186 (276)
T 2b4q_A          107 DILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSK  186 (276)
T ss_dssp             SEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCCSCTTHHHHH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCCCccccHHHH
Confidence            99999999532          234678999999988887764    3444    7999999954223334455 899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+.+..
T Consensus       187 ~a~~~~~~~l  196 (276)
T 2b4q_A          187 AALHQLSRML  196 (276)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.85  E-value=5.3e-21  Score=150.86  Aligned_cols=141  Identities=12%  Similarity=0.052  Sum_probs=110.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCC---CcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ..++++++||||+|+||++++++|+++|   ++|++++|+.+.....    ....++.++.+|++|+++++++++     
T Consensus        18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            3567899999999999999999999999   9999999986642210    113478999999999999988876     


Q ss_pred             ----CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc----------C-----CCEEEEEeccc-c
Q 029008          121 ----GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK----------G-----VKRFVYISAAD-F  169 (200)
Q Consensus       121 ----~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~----------~-----~~~~v~vSS~~-~  169 (200)
                          ++|+||||||...           .++..+++|+.+++++++++.+.          +     .++||++||.. +
T Consensus        98 ~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~  177 (267)
T 1sny_A           98 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS  177 (267)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred             cCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccccc
Confidence                7999999999643           12446899999999998887543          2     46899999943 2


Q ss_pred             CcC--CcCCcchhhhHHhhHHHHHhh
Q 029008          170 GVA--NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       170 ~~~--~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...  ..+...|+.+|+++|.+++..
T Consensus       178 ~~~~~~~~~~~Y~~sK~a~~~~~~~l  203 (267)
T 1sny_A          178 IQGNTDGGMYAYRTSKSALNAATKSL  203 (267)
T ss_dssp             STTCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHH
Confidence            221  135678999999999998863

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.85  E-value=1.7e-21  Score=154.22  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=112.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------cc-CCCCeeEEEccCCCHHHHHHHhc---CCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD---GVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~-~~~~~~~~~~Dl~d~~~~~~~~~---~~d  123 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+      .. ....+.++.+|++|++.++++++   ++|
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            467899999999999999999999999999999998643211      11 12467889999999999988876   689


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ++|||||...          .++..+++|+.+++.+.+++    ++.+.++||++||...-.+.++...|+.+|++++.+
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l  167 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSL  167 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCCcchHHHHHHHHHHHH
Confidence            9999999643          23456899999988887765    345667999999965445556778999999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       168 ~~~l  171 (267)
T 3t4x_A          168 SRSL  171 (267)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.85  E-value=2e-21  Score=154.01  Aligned_cols=142  Identities=15%  Similarity=0.105  Sum_probs=113.3

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      +...+|+++||||+|+||.+++++|+++|++|++++|+.....+      .....++.++.+|++|+++++++++     
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            34567899999999999999999999999999999996543211      1124578999999999999888776     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                        ++|++|||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|+
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  184 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKG  184 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCCCchHhHHHHH
Confidence              6899999999643          234578999999998887764    346679999999543344566789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+++..
T Consensus       185 a~~~~~~~l  193 (271)
T 4iin_A          185 GMIAMSKSF  193 (271)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.85  E-value=2.5e-21  Score=153.06  Aligned_cols=139  Identities=16%  Similarity=0.080  Sum_probs=110.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.....+      .....++.++.+|++|+++++++++       
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999999984322111      0113578899999999999988876       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccc-cCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAAD-FGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~-~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|+||||||...          .++..+++|+.++.++++++.+.   + ++||++||.. +..+.++...|+.+|+++
T Consensus        99 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~  177 (274)
T 1ja9_A           99 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGIPNHALYAGSKAAV  177 (274)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSCCSCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCCCCCchHHHHHHHH
Confidence            7899999999642          12457899999999999988764   4 6999999953 313445677899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      |.+++..
T Consensus       178 ~~~~~~~  184 (274)
T 1ja9_A          178 EGFCRAF  184 (274)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.85  E-value=1.8e-21  Score=152.59  Aligned_cols=138  Identities=15%  Similarity=0.083  Sum_probs=103.1

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..++|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3567899999999999999999999999999999997644211     1123578899999999999988876       


Q ss_pred             CCCEEEEccccCC-------------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 GVTAVISCVGGFG-------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 ~~d~vi~~ag~~~-------------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                      ++|++|||||...             .++..+++|+.+++++.+++    ++.+.++||++||...-   .+...|+.+|
T Consensus        86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~---~~~~~Y~asK  162 (253)
T 3qiv_A           86 GIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW---LYSNYYGLAK  162 (253)
T ss_dssp             CCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------CCH
T ss_pred             CCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc---CCCchhHHHH
Confidence            7899999999631             12457899999987776665    45566799999994211   3456899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       163 ~a~~~~~~~l  172 (253)
T 3qiv_A          163 VGINGLTQQL  172 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.85  E-value=3.4e-21  Score=155.09  Aligned_cols=140  Identities=18%  Similarity=0.079  Sum_probs=112.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            457899999999999999999999999999999998654211     1123578999999999999988776       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|+||||||...          .++..+++|+.++.++++++.    +.+ .++||++||...-.+.+....|++||+++
T Consensus       109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  188 (301)
T 3tjr_A          109 VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGV  188 (301)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHHHHH
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCchHHHHHHHHH
Confidence            899999999642          234578999999999988864    334 56999999965444556678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       189 ~~~~~~l  195 (301)
T 3tjr_A          189 VGLAETL  195 (301)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.85  E-value=1.9e-21  Score=151.89  Aligned_cols=140  Identities=14%  Similarity=0.062  Sum_probs=112.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999998643211     1123578999999999999988775       4


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|++|||||...          .++..+++|+.+++++++++.+    .+.++||++||...-.+.+....|+.+|++.+
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~  162 (247)
T 3lyl_A           83 IDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVI  162 (247)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCcHHHHHHHHHHH
Confidence            799999999643          2345789999999998888643    45669999999543344556789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       163 ~~~~~l  168 (247)
T 3lyl_A          163 GFSKSL  168 (247)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.85  E-value=2.1e-21  Score=153.20  Aligned_cols=140  Identities=14%  Similarity=0.102  Sum_probs=110.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   84 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            357899999999999999999999999999999997543111     1113468899999999998887765       6


Q ss_pred             CCEEEEccccC-C----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGF-G----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~-~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|+||||||.. .          .++..+++|+.+++++++++.+    .+.++||++||...-.+.+....|+.+|+++
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  164 (262)
T 1zem_A           85 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAI  164 (262)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCCchHHHHHHHH
Confidence            89999999864 1          2355789999999998888754    3567999999953223345567899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       165 ~~~~~~l  171 (262)
T 1zem_A          165 IALTETA  171 (262)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888763

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.85  E-value=7.6e-21  Score=150.12  Aligned_cols=136  Identities=15%  Similarity=0.157  Sum_probs=108.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ..++|+++||||+++||+++++.|+++|++|++.+|+..+..     .+..++++|++|+++++++++       ++|++
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDil   82 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGL-----PEELFVEADLTTKEGCAIVAEATRQRLGGVDVI   82 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTS-----CTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEE
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCC-----CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            467899999999999999999999999999999999765422     234578999999998887765       58999


Q ss_pred             EEccccCC------------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCC-cCCcchhhhHHhhHH
Q 029008          126 ISCVGGFG------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVAN-YLLQGYYEGKDSNLS  188 (200)
Q Consensus       126 i~~ag~~~------------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~-~~~~~Y~~sK~~~E~  188 (200)
                      |||||...            +|+..+++|+.+++.+.+++    ++++.++||++||.....+. .....|++||++++.
T Consensus        83 VnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~~~~Y~asKaal~~  162 (261)
T 4h15_A           83 VHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPESTTAYAAAKAALST  162 (261)
T ss_dssp             EECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTTCHHHHHHHHHHHH
T ss_pred             EECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCccHHHHHHHHHHHH
Confidence            99998532            24567899999999887776    45566799999996433333 345789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       163 lt~~l  167 (261)
T 4h15_A          163 YSKAM  167 (261)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88863

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.85  E-value=3.2e-21  Score=150.55  Aligned_cols=141  Identities=15%  Similarity=0.099  Sum_probs=111.4

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccC--CCHHHHHHHhc----
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNL--LSSDSWKEALD----  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl--~d~~~~~~~~~----  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|+  +|.++++++++    
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999998643211      11124677788777  88888887665    


Q ss_pred             ---CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 ---GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 ---~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                         ++|++|||||...           .++..+++|+.+++++++++    ++.+.++||++||.....+.++...|+.+
T Consensus        91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~s  170 (247)
T 3i1j_A           91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVS  170 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCCCcchhHHH
Confidence               6899999999642           23457899999999999888    34456799999996544555667899999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+++..
T Consensus       171 K~a~~~~~~~l  181 (247)
T 3i1j_A          171 KFATEGLMQTL  181 (247)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=2.5e-21  Score=152.65  Aligned_cols=140  Identities=12%  Similarity=0.090  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++++.....+      .....++.++.+|++|+++++++++       
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999998555433111      1124578999999999999988776       


Q ss_pred             CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHcCC--CEEEEEeccc-cCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAAD-FGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~~~--~~~v~vSS~~-~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|++|||||...           .++..+++|+.+++++.+++.+...  ++||++||.. +..+.+....|+.||+++
T Consensus        86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~  165 (259)
T 3edm_A           86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGGPGALAYATSKGAV  165 (259)
T ss_dssp             SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCSTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCCCCcHHHHHHHHHH
Confidence            6899999998541           1255789999999999999977643  3899999953 324456677899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       166 ~~l~~~l  172 (259)
T 3edm_A          166 MTFTRGL  172 (259)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.85  E-value=1.4e-21  Score=153.71  Aligned_cols=140  Identities=14%  Similarity=0.092  Sum_probs=112.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            467899999999999999999999999999999998644211  1113578999999999998887664       6899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      +|||||...          .++..+++|+.+++++.+++...-  .++||++||...-.+.++...|+.+|++++.+.+.
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~  165 (255)
T 4eso_A           86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASV  165 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCTTBHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCchHHHHHHHHHHHHHHH
Confidence            999999643          235678999999999999997642  34899999964444556678999999999998886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       166 l  166 (255)
T 4eso_A          166 L  166 (255)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.85  E-value=1.5e-21  Score=152.55  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=109.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+....    .....++.++.+|++|+++++++++       ++
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            356899999999999999999999999999999997543111    0112578999999999999888776       48


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCC-CEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGV-KRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~-~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      |+||||||...          .++..+++|+.+++++.+++    ++.+. ++||++||...-.+.++...|+.+|++.|
T Consensus        84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~  163 (251)
T 1zk4_A           84 STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVR  163 (251)
T ss_dssp             CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCCCCccchHHHHHHH
Confidence            99999999542          12457899999888766665    44565 79999999543334456789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       164 ~~~~~~  169 (251)
T 1zk4_A          164 IMSKSA  169 (251)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988753

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.85  E-value=1.7e-21  Score=152.87  Aligned_cols=130  Identities=10%  Similarity=0.003  Sum_probs=105.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC----CCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG----VTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~d~vi~~ag~  131 (200)
                      ||+++||||+|+||.+++++|+++|++|++++|+.++...       . +.+|++|+++++++++.    +|+||||||.
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------~-~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~   72 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------D-LSTAEGRKQAIADVLAKCSKGMDGLVLCAGL   72 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------C-TTSHHHHHHHHHHHHTTCTTCCSEEEECCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------c-cccCCCCHHHHHHHHHHhCCCCCEEEECCCC
Confidence            4789999999999999999999999999999998654211       1 67899999999998864    5999999996


Q ss_pred             CC---CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccc-cC---------------------------cCCcCC
Q 029008          132 FG---SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD-FG---------------------------VANYLL  176 (200)
Q Consensus       132 ~~---~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~-~~---------------------------~~~~~~  176 (200)
                      ..   .++..+++|+.+++++++++.    +.+.++||++||.. +.                           .+.++.
T Consensus        73 ~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (257)
T 1fjh_A           73 GPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGN  152 (257)
T ss_dssp             CTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHH
T ss_pred             CCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhcccCCCCc
Confidence            43   457789999999999988875    44568999999943 31                           122345


Q ss_pred             cchhhhHHhhHHHHHhh
Q 029008          177 QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       177 ~~Y~~sK~~~E~~~~~~  193 (200)
                      ..|+.||++++.+++..
T Consensus       153 ~~Y~~sK~a~~~~~~~l  169 (257)
T 1fjh_A          153 LAYAGSKNALTVAVRKR  169 (257)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            78999999999998863

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.85  E-value=7.7e-22  Score=169.23  Aligned_cols=138  Identities=17%  Similarity=0.256  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-----------------cccCCCCeeEEEccCCCHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------------RDSWANNVIWHQGNLLSSDSWK  116 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~Dl~d~~~~~  116 (200)
                      ..+++|+||||+||||++|+++|+++|++|++++|+.....                 ......+++++.+|+.|++.+.
T Consensus       148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~  227 (508)
T 4f6l_B          148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV  227 (508)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred             CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence            34689999999999999999999999999999999876210                 0112468999999999988777


Q ss_pred             HHhcCCCEEEEccccCC---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcC------------------CcC
Q 029008          117 EALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVA------------------NYL  175 (200)
Q Consensus       117 ~~~~~~d~vi~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~------------------~~~  175 (200)
                       ++.++|+||||||...   ++...+++|+.++.+++++|.+ +.++|||+||...|..                  ..+
T Consensus       228 -~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~vG~~~~~~~~~~~~~E~~~~~~~~~  305 (508)
T 4f6l_B          228 -LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLL  305 (508)
T ss_dssp             -CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCTTSEECTTCSCCEECTTCSCSSBCC
T ss_pred             -CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhhccCCccCCcCcccccccccccccC
Confidence             7789999999999753   4567889999999999999988 6789999999533221                  125


Q ss_pred             CcchhhhHHhhHHHHHhh
Q 029008          176 LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       176 ~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+.|+.+|+++|++++++
T Consensus       306 ~~~Y~~sK~~~E~~~~~~  323 (508)
T 4f6l_B          306 TSPYTRSKFYSELKVLEA  323 (508)
T ss_dssp             CSHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHH
Confidence            688999999999999874

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.85  E-value=2e-21  Score=153.91  Aligned_cols=140  Identities=16%  Similarity=0.133  Sum_probs=110.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++++.....+      .....++.++.+|++|+++++++++       
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999999865433111      1124578999999999999888776       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ++|++|||||...          .++..+++|+.+++++++++..    .+.++||++||...-.+.++...|+.+|+++
T Consensus       103 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  182 (269)
T 3gk3_A          103 KVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGI  182 (269)
T ss_dssp             CCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHH
T ss_pred             CCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCCCcchHHHHHHHH
Confidence            7899999999642          2345789999999988888643    5667999999954334455678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       183 ~~~~~~l  189 (269)
T 3gk3_A          183 HGFTKTL  189 (269)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988763

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.85  E-value=2.5e-21  Score=154.36  Aligned_cols=140  Identities=18%  Similarity=0.159  Sum_probs=111.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            457899999999999999999999999999999997544211  1224578999999999998887765       5899


Q ss_pred             EEEccccCCC---------------CcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          125 VISCVGGFGS---------------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       125 vi~~ag~~~~---------------~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|||||....               ++..+++|+.+++++++++.+.   ..++||++||...-.+.+....|+.||+++
T Consensus        83 lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  162 (281)
T 3zv4_A           83 LIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAV  162 (281)
T ss_dssp             EECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSSSCHHHHHHHHHH
T ss_pred             EEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCCCCchhHHHHHHH
Confidence            9999996421               3456789999999998887542   236999999965444556677899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       163 ~~l~~~l  169 (281)
T 3zv4_A          163 VGLVRQM  169 (281)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.85  E-value=9e-21  Score=150.67  Aligned_cols=141  Identities=18%  Similarity=0.199  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc-----------cc------ccCCCCeeEEEccCCCHHHH
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------LR------DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------~~------~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      +..+|+++||||+|+||.+++++|+++|++|++++|+....           .+      .....++.++.+|++|++++
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL   89 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            35678999999999999999999999999999999873210           00      11135789999999999999


Q ss_pred             HHHhc-------CCCEEEEccccCC------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEecccc--Cc--CC
Q 029008          116 KEALD-------GVTAVISCVGGFG------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADF--GV--AN  173 (200)
Q Consensus       116 ~~~~~-------~~d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~--~~--~~  173 (200)
                      +++++       ++|++|||||...      .++..+++|+.+++++++++.+    .+ .++||++||...  +.  +.
T Consensus        90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~  169 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSAD  169 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCCSS
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCccCC
Confidence            98876       7899999999643      3466889999999999988743    33 468999999532  21  12


Q ss_pred             cCCcchhhhHHhhHHHHHhh
Q 029008          174 YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ++...|+.||++++.+++..
T Consensus       170 ~~~~~Y~asKaa~~~~~~~l  189 (278)
T 3sx2_A          170 PGSVGYVAAKHGVVGLMRVY  189 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHhHHHHHHHHHHHHHH
Confidence            45568999999999998864

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.85  E-value=1.6e-21  Score=153.49  Aligned_cols=141  Identities=13%  Similarity=0.079  Sum_probs=112.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|.++++++++       ++|
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id   85 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVD   85 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            3567899999999999999999999999999999998654211  1124578999999999999888776       689


Q ss_pred             EEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc----C----CCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          124 AVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK----G----VKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       124 ~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~----~----~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      ++|||||...           .++..+++|+.+++++++++.+.    +    ..+||++||.....+.+....|+.+|+
T Consensus        86 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKa  165 (261)
T 3n74_A           86 ILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKG  165 (261)
T ss_dssp             EEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTTCHHHHHHHH
T ss_pred             EEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCCccHHHHHHH
Confidence            9999999643           12456899999999888887432    1    347999999654455566778999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+++..
T Consensus       166 a~~~~~~~l  174 (261)
T 3n74_A          166 WVVSVTKAL  174 (261)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.85  E-value=1.8e-21  Score=154.31  Aligned_cols=141  Identities=10%  Similarity=0.016  Sum_probs=114.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ..++|+++||||+++||+++++.|+++|++|++++|+.+...+  .....++..+++|++|+++++++++       ++|
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD  105 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID  105 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            3678999999999999999999999999999999998654211  1224578899999999999988765       589


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ++|||||...          .|+..+++|+.+++.+.+++.+.-  .++||++||...-.+.+....|+++|+++..+.+
T Consensus       106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~~~~~Y~asKaav~~ltr  185 (273)
T 4fgs_A          106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFAR  185 (273)
T ss_dssp             EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCCCchHHHHHHHHHHHHHH
Confidence            9999999532          456789999999999999986542  2489999996544555667899999999999888


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       186 ~l  187 (273)
T 4fgs_A          186 NW  187 (273)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.85  E-value=3.9e-21  Score=153.08  Aligned_cols=139  Identities=13%  Similarity=0.053  Sum_probs=109.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCC---CeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWAN---NVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~---~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+...+   .  ....   ++.++.+|++|+++++++++     
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999998643211   0  1112   68999999999999888775     


Q ss_pred             --CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCC-cCCcch
Q 029008          121 --GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVAN-YLLQGY  179 (200)
Q Consensus       121 --~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~-~~~~~Y  179 (200)
                        ++|+||||||...              .++..+++|+.+++++++++.+    .+ ++||++||.....+. ++...|
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~Y  162 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQPDFLYY  162 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCCCSSHHH
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCCCCcccHH
Confidence              6899999999542              1345679999999999888754    34 799999995433333 567789


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|++++.+.+..
T Consensus       163 ~asK~a~~~~~~~l  176 (280)
T 1xkq_A          163 AIAKAALDQYTRST  176 (280)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988864

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.85  E-value=4.8e-21  Score=150.95  Aligned_cols=141  Identities=12%  Similarity=0.075  Sum_probs=113.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..++|+++||||+++||+++++.|+++|++|++.+|+.+....    .....++.++.+|++|+++++++++       +
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~   83 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGR   83 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999999999998765211    1124578999999999998887765       5


Q ss_pred             CCEEEEccccCC---------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          122 VTAVISCVGGFG---------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       122 ~d~vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|++|||||...         .|+..+++|+.+++.+.+++.+.   +.++||++||...-.+.+....|++||++++.+
T Consensus        84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~~~Y~asKaav~~l  163 (258)
T 4gkb_A           84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQGNTSGYCASKGAQLAL  163 (258)
T ss_dssp             CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCCCchHHHHHHHHHHHH
Confidence            899999999632         34667899999999888876432   236999999964444556678899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       164 tr~l  167 (258)
T 4gkb_A          164 TREW  167 (258)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8863

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.85  E-value=1.9e-21  Score=154.67  Aligned_cols=140  Identities=18%  Similarity=0.190  Sum_probs=108.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------c-cCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~-~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.++...      . ....++.++.+|++|+++++++++      
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            356899999999999999999999999999999997543111      0 012457889999999999888776      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHH----HHHHHHHHHcCC--CEEEEEeccc-cC-cCCcCCcchhh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTAN----INAIRAASEKGV--KRFVYISAAD-FG-VANYLLQGYYE  181 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~----~~~~~~a~~~~~--~~~v~vSS~~-~~-~~~~~~~~Y~~  181 (200)
                       ++|+||||||...          .++..+++|+.++    ..+++.+++.+.  ++||++||.. +. .+.++...|+.
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~  189 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSA  189 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCCCCCCchhHH
Confidence             7999999999532          2345789999994    455666666665  7999999953 32 34456678999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|++++.+++..
T Consensus       190 sK~a~~~~~~~l  201 (279)
T 1xg5_A          190 TKYAVTALTEGL  201 (279)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888753

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.85  E-value=3.8e-21  Score=151.19  Aligned_cols=139  Identities=12%  Similarity=0.049  Sum_probs=109.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeec-CCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSR-SGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||+|+||++++++|+++|++|++++| +.+...+     .....++.++.+|++|+++++++++       +
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999999 4322110     0113468899999999999888776       7


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|+||||||...          .++..+++|+.++.++++++.+    .+ .++||++||.....+.++...|+.+|++.
T Consensus        86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~  165 (261)
T 1gee_A           86 LDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGM  165 (261)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCCCccHHHHHHHHH
Confidence            899999999642          1245789999999988777643    34 57999999964444556678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+++..
T Consensus       166 ~~~~~~l  172 (261)
T 1gee_A          166 KLMTETL  172 (261)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988763

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.85  E-value=2.7e-21  Score=153.33  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=110.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-ccCCCCeeEEEccCCCHHHHHHHhc-------CCCEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~v  125 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+.... .....++.++.+|++|+++++++++       ++|++
T Consensus         7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   86 (270)
T 1yde_A            7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   86 (270)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            357899999999999999999999999999999997543211 0112358899999999999988775       68999


Q ss_pred             EEccccCCC-----------CcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          126 ISCVGGFGS-----------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       126 i~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |||||....           ++..+++|+.+++++++++.+.   +.++||++||.....+.+....|+.+|++++.+.+
T Consensus        87 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~  166 (270)
T 1yde_A           87 VNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTK  166 (270)
T ss_dssp             EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCCCCcccHHHHHHHHHHHH
Confidence            999996421           3457899999999998888532   24799999995322334456789999999999988


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       167 ~l  168 (270)
T 1yde_A          167 AL  168 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.85  E-value=4e-21  Score=145.61  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=103.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC---CCEEEEccccCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG---VTAVISCVGGFG  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~d~vi~~ag~~~  133 (200)
                      |+++||||+|+||++++++|+ +|++|++++|+..            ++.+|++|++++++++++   +|+||||||...
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~~~   70 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG------------DVTVDITNIDSIKKMYEQVGKVDAIVSATGSAT   70 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS------------SEECCTTCHHHHHHHHHHHCCEEEEEECCCCCC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc------------ceeeecCCHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            479999999999999999999 9999999999753            478999999999988875   899999999542


Q ss_pred             ----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          134 ----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                .+...+++|+.++.++++++.+.   + ++||++||.....+.++...|+.+|++.|.+++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~~~~~~~  142 (202)
T 3d7l_A           71 FSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSA  142 (202)
T ss_dssp             CCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCCCCccHHHHHHHHHHHHHHHHH
Confidence                      12356789999999999999776   3 68999999543344556678999999999999875

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.85  E-value=2.8e-21  Score=152.83  Aligned_cols=141  Identities=16%  Similarity=0.122  Sum_probs=110.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..++|+++||||+|+||.+++++|+++|++|+++.++.....+      .....++.++.+|++|+++++++++      
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            3567899999999999999999999999999887655332111      1124578999999999999988776      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~-----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                       ++|++|||||...          .++..+++|+.++.++++++.     +.+.++||++||...-.+.++...|+.+|+
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  182 (267)
T 4iiu_A          103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKA  182 (267)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred             CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCCCchhHHHHH
Confidence             6899999999643          234578999999999988863     455679999999543334456789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       183 a~~~~~~~l  191 (267)
T 4iiu_A          183 GIIGATKAL  191 (267)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888753

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.85  E-value=2.3e-21  Score=153.57  Aligned_cols=140  Identities=14%  Similarity=0.172  Sum_probs=110.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++++.....+      .....++.++.+|++|+++++++++       
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999998665443211      1124578999999999999988775       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|++|||||...          .++..+++|+.+++++++++.+.-  .++||++||.....+.+....|+.||++++.
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~  184 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEA  184 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCCCchHHHHHHHHHHH
Confidence            6899999999642          235677899999999999886642  3589999996544455667899999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       185 l~~~l  189 (267)
T 3u5t_A          185 MTHVL  189 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.85  E-value=8.2e-21  Score=148.63  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=108.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCe-eEEEccCCCHHHHHHHh------cCCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNV-IWHQGNLLSSDSWKEAL------DGVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~-~~~~~Dl~d~~~~~~~~------~~~d~  124 (200)
                      ..+++++||||+|+||++++++|+++|++|++++|+.++...  .....++ .++.+|++|++++++++      .++|+
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   88 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSI   88 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcE
Confidence            456899999999999999999999999999999997543211  0112355 88999999999998876      47899


Q ss_pred             EEEccccCCC----------CcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccc-c-CcCCcCCcchhhhHHhhHH
Q 029008          125 VISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAAD-F-GVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       125 vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~-~-~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ||||||....          ++..+++|+.++.++++++    ++.+.++||++||.. + +.+..+...|+.+|++.|.
T Consensus        89 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~  168 (254)
T 2wsb_A           89 LVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQ  168 (254)
T ss_dssp             EEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCBHHHHHHHHHHHH
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCCCcchHHHHHHHHHHH
Confidence            9999996431          2456789999988777765    455678999999953 2 2233334789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       169 ~~~~~  173 (254)
T 2wsb_A          169 LTRAL  173 (254)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.85  E-value=4.6e-21  Score=149.46  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=109.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc---------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---------~~d~  124 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+...     ....++.+|++|+++++++++         ++|+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~   79 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   79 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            35689999999999999999999999999999999865532     245778899999998887765         6899


Q ss_pred             EEEccccCC-----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          125 VISCVGGFG-----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       125 vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      +|||||...           .++..+++|+.++..+.+++.+.-  .++||++||...-.+.++...|+.+|++++.+.+
T Consensus        80 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~  159 (241)
T 1dhr_A           80 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQ  159 (241)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHH
T ss_pred             EEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCCCchHHHHHHHHHHHHHH
Confidence            999999532           124567899999999999987642  2589999995433344567889999999999998


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ..
T Consensus       160 ~l  161 (241)
T 1dhr_A          160 SL  161 (241)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.4e-21  Score=151.43  Aligned_cols=138  Identities=14%  Similarity=0.197  Sum_probs=109.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      |+|+++||||+|+||.+++++|+++|  +.|++++|+.+...+  .....++.++.+|++|+++++++++       ++|
T Consensus         1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   80 (254)
T 3kzv_A            1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKID   80 (254)
T ss_dssp             -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCcc
Confidence            46899999999999999999999985  688888887543211  1113578999999999999988775       689


Q ss_pred             EEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      ++|||||...           .++..+++|+.+++++.+++    ++.+ ++||++||.....+.++...|+.||++++.
T Consensus        81 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~  159 (254)
T 3kzv_A           81 SLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYFSSWGAYGSSKAALNH  159 (254)
T ss_dssp             EEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSSCCSHHHHHHHHHHHH
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCCCCcchHHHHHHHHHH
Confidence            9999999642           23457899999999998887    4445 799999996544555677899999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       160 ~~~~l  164 (254)
T 3kzv_A          160 FAMTL  164 (254)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98863

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.85  E-value=1.9e-21  Score=152.70  Aligned_cols=139  Identities=17%  Similarity=0.200  Sum_probs=109.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   83 (253)
T 1hxh_A            4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            357899999999999999999999999999999987543211  1113578899999999999887775       4799


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .++..+++|+.+++.+.+++    ++.+ ++||++||...-.+.++...|+.+|+++|.++
T Consensus        84 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  162 (253)
T 1hxh_A           84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALT  162 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCCCCCccHHHHHHHHHHHH
Confidence            999999642          23457899999888776654    4456 79999999543344556678999999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       163 ~~l  165 (253)
T 1hxh_A          163 RAA  165 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.85  E-value=6.7e-21  Score=149.47  Aligned_cols=133  Identities=16%  Similarity=0.137  Sum_probs=107.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.++..       ...+.+|++|+++++++++       ++|+||
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~-------~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li   92 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA-------DHSFTIKDSGEEEIKSVIEKINSKSIKVDTFV   92 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS-------SEEEECSCSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-------ccceEEEeCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46789999999999999999999999999999999876532       2457889999999888775       469999


Q ss_pred             EccccCC-----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          127 SCVGGFG-----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       127 ~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||||...           .++..+++|+.++.++++++.+..  .++||++||...-.+.++...|+.+|++++.+++..
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~l  172 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDL  172 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCCCCchhHHHHHHHHHHHHHH
Confidence            9999532           224578999999999999987642  248999999643445566789999999999999875

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.85  E-value=4.2e-21  Score=149.16  Aligned_cols=133  Identities=23%  Similarity=0.200  Sum_probs=108.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc---------CCCEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---------GVTAVI  126 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---------~~d~vi  126 (200)
                      +|+++||||+|+||++++++|+++|++|++++|+.+...     ....++.+|++|+++++++++         ++|+||
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv   77 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVF   77 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            579999999999999999999999999999999865532     245778899999998887765         789999


Q ss_pred             EccccCC-----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          127 SCVGGFG-----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       127 ~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||||...           .++..+++|+.++.++.+++.+.-  .++||++||...-.+.++...|+.+|++++.+++..
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l  157 (236)
T 1ooe_A           78 CVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSL  157 (236)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999532           124567899999999999987642  258999999543344566788999999999999875

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.85  E-value=3.6e-21  Score=154.50  Aligned_cols=140  Identities=12%  Similarity=-0.008  Sum_probs=110.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c---cCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D---SWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~---~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+....   .   ....++.++.+|++|+++++++++       
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999999998543211   0   003578999999999999888775       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH-----cCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE-----KGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~-----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      ++|+||||||...          .++..+++|+.++.++++++.+     .+.++||++||.....+.++...|+.+|++
T Consensus       104 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a  183 (302)
T 1w6u_A          104 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAG  183 (302)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCCcchhHHHHHH
Confidence            4699999999532          2345789999999998888743     345699999995333344567789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +|.+++..
T Consensus       184 ~~~~~~~l  191 (302)
T 1w6u_A          184 VEAMSKSL  191 (302)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.9e-21  Score=154.60  Aligned_cols=139  Identities=15%  Similarity=0.056  Sum_probs=112.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCCccc------cc-CCCCeeEEEccCCCHHHHHHHhc----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~------~~-~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      .+|+++||||+|+||.+++++|+++|+   +|++++|+.+...+      .. ...++.++.+|++|+++++++++    
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999998   99999988644211      00 13478899999999999998886    


Q ss_pred             ---CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 ---GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 ---~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                         ++|++|||||...           .++..+++|+.+++++++++    ++.+.++||++||...-.+.+....|+++
T Consensus       112 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~as  191 (287)
T 3rku_A          112 EFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCAS  191 (287)
T ss_dssp             GGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             hcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCCchHHHH
Confidence               4799999999532           23567899999999998887    45567899999996544455667889999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+.+..
T Consensus       192 Kaa~~~l~~~l  202 (287)
T 3rku_A          192 KFAVGAFTDSL  202 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.85  E-value=1.8e-21  Score=151.51  Aligned_cols=138  Identities=17%  Similarity=0.157  Sum_probs=108.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEe-ecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      +|+++||||+|+||++++++|+++|++|+++ .|+.+....     .....++.++.+|++|+++++++++       ++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999995 665432111     0113468899999999999998876       68


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      |+||||||...          .++..+++|+.++.++++++.+    .+.++||++||...-.+.++...|+.+|++.+.
T Consensus        81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~  160 (244)
T 1edo_A           81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIG  160 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCCCCccchhhHHHHHH
Confidence            99999999643          2345789999999999888754    467799999995322334556789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +++..
T Consensus       161 ~~~~l  165 (244)
T 1edo_A          161 FSKTA  165 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88763

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.84  E-value=3.3e-21  Score=151.01  Aligned_cols=139  Identities=14%  Similarity=0.110  Sum_probs=109.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC-CCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS-GRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||+|+||++++++|+++|++|++++|+ .+....     .....++.++.+|++|+++++++++       +
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999998 443211     0113478999999999999998887       7


Q ss_pred             CCEEEEcccc-CC----------CCcccchhhHHHHHHHHHHHHH----cC--C---CEEEEEeccccCc-CCcCCcchh
Q 029008          122 VTAVISCVGG-FG----------SNSYMYKINGTANINAIRAASE----KG--V---KRFVYISAADFGV-ANYLLQGYY  180 (200)
Q Consensus       122 ~d~vi~~ag~-~~----------~~~~~~~~n~~~~~~~~~~a~~----~~--~---~~~v~vSS~~~~~-~~~~~~~Y~  180 (200)
                      +|+||||||. ..          .++..+++|+.++.++++++.+    .+  .   ++||++||..... +.++...|+
T Consensus        86 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y~  165 (258)
T 3afn_B           86 IDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYG  165 (258)
T ss_dssp             CSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCTTCHHHH
T ss_pred             CCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCCCchHHH
Confidence            9999999996 21          1345679999999988887642    22  2   6899999853222 455678999


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .+|+++|.+++..
T Consensus       166 ~sK~a~~~~~~~~  178 (258)
T 3afn_B          166 AAKAFLHNVHKNW  178 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998864

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.84  E-value=8.9e-21  Score=152.47  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=111.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc--------c---c------ccCCCCeeEEEccCCCHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--------L---R------DSWANNVIWHQGNLLSSDSWK  116 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~---~------~~~~~~~~~~~~Dl~d~~~~~  116 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+....        .   +      .....++.++.+|++|+++++
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            4678999999999999999999999999999999874311        0   0      112457899999999999998


Q ss_pred             HHhc-------CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc-----CCCEEEEEeccccCcCC
Q 029008          117 EALD-------GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK-----GVKRFVYISAADFGVAN  173 (200)
Q Consensus       117 ~~~~-------~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~-----~~~~~v~vSS~~~~~~~  173 (200)
                      ++++       ++|++|||||...           .++..+++|+.+++++.+++...     +.++||++||...-.+.
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~  185 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGA  185 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSCC
T ss_pred             HHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC
Confidence            8775       6899999999532           23467899999999999887443     35699999996544455


Q ss_pred             cCCcchhhhHHhhHHHHHhh
Q 029008          174 YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +....|+.||++++.+.+..
T Consensus       186 ~~~~~Y~asKaa~~~l~~~l  205 (299)
T 3t7c_A          186 ENIGNYIASKHGLHGLMRTM  205 (299)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHH
Confidence            66789999999999988864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.84  E-value=2.4e-20  Score=148.83  Aligned_cols=140  Identities=14%  Similarity=0.091  Sum_probs=111.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------------c---------ccCCCCeeEEEccCCCH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------------R---------DSWANNVIWHQGNLLSS  112 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~---------~~~~~~~~~~~~Dl~d~  112 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.....            +         .....++.++.+|++|+
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            46789999999999999999999999999999998732110            0         11235789999999999


Q ss_pred             HHHHHHhc-------CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEecccc
Q 029008          113 DSWKEALD-------GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADF  169 (200)
Q Consensus       113 ~~~~~~~~-------~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~~  169 (200)
                      ++++++++       ++|++|||||...           .++..+++|+.+++++++++...    + .++||++||...
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~  168 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGG  168 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence            99988775       6899999999632           23457899999999998887432    3 458999999654


Q ss_pred             CcCCcCCcchhhhHHhhHHHHHhh
Q 029008          170 GVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       170 ~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      -.+.+....|+.+|++++.+.+..
T Consensus       169 ~~~~~~~~~Y~asKaa~~~~~~~l  192 (286)
T 3uve_A          169 LKAYPHTGHYVAAKHGVVGLMRAF  192 (286)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHH
Confidence            445566788999999999998864

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.84  E-value=4.9e-21  Score=153.79  Aligned_cols=140  Identities=19%  Similarity=0.183  Sum_probs=106.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCH-HHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSS-DSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~-~~~~~~~~------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.++..+      .....++.++.+|++|+ +.++++++      
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999999998654211      11234799999999998 77776654      


Q ss_pred             -CCCEEEEccccCCC----------------------------------------CcccchhhHHHHHHHHHHHH----H
Q 029008          121 -GVTAVISCVGGFGS----------------------------------------NSYMYKINGTANINAIRAAS----E  155 (200)
Q Consensus       121 -~~d~vi~~ag~~~~----------------------------------------~~~~~~~n~~~~~~~~~~a~----~  155 (200)
                       ++|+||||||....                                        ++..+++|+.|++.+++++.    +
T Consensus        90 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~  169 (311)
T 3o26_A           90 GKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQL  169 (311)
T ss_dssp             SSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhcc
Confidence             79999999997521                                        13358999999998888874    3


Q ss_pred             cCCCEEEEEeccccCcC-------------------------------------------CcCCcchhhhHHhhHHHHHh
Q 029008          156 KGVKRFVYISAADFGVA-------------------------------------------NYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       156 ~~~~~~v~vSS~~~~~~-------------------------------------------~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      .+.++||++||...-.+                                           ..+...|+.||++.+.+++.
T Consensus       170 ~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~  249 (311)
T 3o26_A          170 SDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRV  249 (311)
T ss_dssp             SSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHHHH
Confidence            45679999999531111                                           12346799999999999886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       250 l  250 (311)
T 3o26_A          250 L  250 (311)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.84  E-value=2.2e-21  Score=151.02  Aligned_cols=138  Identities=17%  Similarity=0.154  Sum_probs=104.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEe-ecCCCCccc-----ccCCCCeeE-EEccCCCHHHHHHHhc-------C
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIW-HQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~-----~~~~~~~~~-~~~Dl~d~~~~~~~~~-------~  121 (200)
                      +|+++||||+|+||.+++++|+++|++|+++ +|+.+....     .....++.+ +.+|++|+++++++++       +
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999999999998 676433111     011235666 8999999999888764       7


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+||||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.++...|+.+|++.|
T Consensus        81 ~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  160 (245)
T 2ph3_A           81 LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLI  160 (245)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCSSBHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCCCCcchHHHHHHHH
Confidence            999999999643          22457899999976665554    4567789999999532223345678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       161 ~~~~~l  166 (245)
T 2ph3_A          161 GFTRAV  166 (245)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.84  E-value=1.3e-21  Score=158.83  Aligned_cols=139  Identities=18%  Similarity=0.095  Sum_probs=109.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+....       .....++.++.+|++|+++++++++      
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            457899999999999999999999999999999998654211       0011278999999999999988775      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----------CCCEEEEEeccccCcCCcCCcch
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----------GVKRFVYISAADFGVANYLLQGY  179 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----------~~~~~v~vSS~~~~~~~~~~~~Y  179 (200)
                       ++|+||||||...          .++..+++|+.|++++++++...          +.++||++||...-.+.+....|
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~~~~Y  165 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIY  165 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSSSHHH
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCCCHHH
Confidence             5799999999532          23457899999999988887543          35689999996433445566789


Q ss_pred             hhhHHhhHHHHHh
Q 029008          180 YEGKDSNLSPLLA  192 (200)
Q Consensus       180 ~~sK~~~E~~~~~  192 (200)
                      +.||++++.+.+.
T Consensus       166 ~aSKaal~~~~~~  178 (319)
T 3ioy_A          166 NTTKFAVRGLSES  178 (319)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988887765

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.84  E-value=4.9e-21  Score=152.12  Aligned_cols=137  Identities=14%  Similarity=0.038  Sum_probs=109.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---cc-CCCCeeEEEccCCCHHHHHHHhcC-------CCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALDG-------VTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~~-------~d~v  125 (200)
                      |+++||||+|+||.+++++|+++|++|++++|+.+...+   .. ...++.++.+|++|+++++++++.       +|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            899999999999999999999999999999998543211   00 114788999999999999988864       5999


Q ss_pred             EEccccCC-----------CCcccchhhHHHHHHHHHHHH----HcCCC-EEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          126 ISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVK-RFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       126 i~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~----~~~~~-~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      |||||...           .++..+++|+.+++++.+++.    +.+.+ +||++||.....+.+....|+.+|++++.+
T Consensus       102 vnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~~~~Y~asKaa~~~l  181 (272)
T 2nwq_A          102 INNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQF  181 (272)
T ss_dssp             EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCCCCchHHHHHHHHHHH
Confidence            99999642           134578999999888777663    45667 999999964334445667899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       182 ~~~l  185 (272)
T 2nwq_A          182 SLNL  185 (272)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.84  E-value=6.4e-21  Score=155.20  Aligned_cols=138  Identities=12%  Similarity=0.024  Sum_probs=110.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-----------cCCCCeeEEEccCCCHHHHHHHhcC---
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-----------SWANNVIWHQGNLLSSDSWKEALDG---  121 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----------~~~~~~~~~~~Dl~d~~~~~~~~~~---  121 (200)
                      +|+++||||+|+||.+++++|+++|++|++++|+.......           ....++.++.+|++|+++++++++.   
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   81 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence            57899999999999999999999999999888764432110           0125789999999999999998874   


Q ss_pred             --CCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 --VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 --~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                        +|+||||||...          .++..+++|+.+++++++++    ++.+.++||++||...-.+.+....|+.||++
T Consensus        82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~~~~Y~aSK~a  161 (327)
T 1jtv_A           82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFA  161 (327)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCCCChHHHHHHHH
Confidence              899999998532          23467899999999998886    44567899999995433344556789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       162 ~~~~~~~l  169 (327)
T 1jtv_A          162 LEGLCESL  169 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988863

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.84  E-value=3.7e-21  Score=151.95  Aligned_cols=141  Identities=15%  Similarity=0.127  Sum_probs=107.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc--cc------ccCCCCeeEEEccCCCHHHHHHHhc----
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LR------DSWANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~------~~~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      ...+|+++||||+|+||.+++++|+++|++|++++|.....  .+      .....++.++.+|++|+++++++++    
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999988754321  00      1123578999999999999998876    


Q ss_pred             ---CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 ---GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ---~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                         ++|++|||||...          .++..+++|+.+++++.+++.+.  +.++||++||.....+.+....|+.+|++
T Consensus        88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  167 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYSTYAGNKAP  167 (262)
T ss_dssp             HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHCCCCC-----CH
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCCCCchhHHHHHH
Confidence               6899999999542          23457889999999999999764  34589999995433344556789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       168 ~~~l~~~l  175 (262)
T 3ksu_A          168 VEHYTRAA  175 (262)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.84  E-value=7.5e-21  Score=152.82  Aligned_cols=139  Identities=12%  Similarity=0.057  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCC---CeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWAN---NVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~---~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.++..+   .  ....   ++.++.+|++|+++++++++     
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999999999999998543211   0  0122   68899999999999988776     


Q ss_pred             --CCCEEEEccccCC------------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCC-cCCcchhh
Q 029008          121 --GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVAN-YLLQGYYE  181 (200)
Q Consensus       121 --~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~-~~~~~Y~~  181 (200)
                        ++|+||||||...            .++..+++|+.+++++++++.+    .+ ++||++||.....+. ++...|+.
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~~~~~~~Y~a  182 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAHSGYPYYAC  182 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSCCTTSHHHHH
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCCCCCcchHHH
Confidence              6899999999532            1245789999999998888754    34 799999995433344 56678999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|++++.+.+..
T Consensus       183 sKaa~~~l~~~l  194 (297)
T 1xhl_A          183 AKAALDQYTRCT  194 (297)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988863

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.84  E-value=9.2e-21  Score=150.69  Aligned_cols=140  Identities=15%  Similarity=0.138  Sum_probs=110.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc------------cc------ccCCCCeeEEEccCCCHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------------LR------DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~------~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+....            .+      .....++.++.+|++|++++
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            4678999999999999999999999999999999853210            00      11235789999999999999


Q ss_pred             HHHhc-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCC
Q 029008          116 KEALD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVAN  173 (200)
Q Consensus       116 ~~~~~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~-~~~~v~vSS~~~~~~~  173 (200)
                      +++++       ++|++|||||...          .++..+++|+.+++++++++.    +.+ .++||++||...-.+.
T Consensus        89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~  168 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQ  168 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCC
Confidence            88775       5899999999643          235578999999999888864    333 4699999996544455


Q ss_pred             cCCcchhhhHHhhHHHHHhh
Q 029008          174 YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +....|+.||++++.+.+..
T Consensus       169 ~~~~~Y~asKaa~~~~~~~l  188 (277)
T 3tsc_A          169 PFMIHYTASKHAVTGLARAF  188 (277)
T ss_dssp             SSCHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHH
Confidence            66788999999999998864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.84  E-value=8.7e-21  Score=155.04  Aligned_cols=126  Identities=24%  Similarity=0.321  Sum_probs=105.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~  127 (200)
                      +++|+||||||++|++|+++|+++|++|++++|+......      .....+++++.+|++|++++.++++  ++|+|||
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~   89 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS   89 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence            4699999999999999999999999999999998633111      1123589999999999999999999  9999999


Q ss_pred             ccccCCCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcC------CcCCcchhhhHHhhHHHHHhh
Q 029008          128 CVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVA------NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       128 ~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~~~~------~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ++|.         .|+.++.+++++|++.| +++||+ |+  ||..      ..+...|+.+|+.+|+++++.
T Consensus        90 ~a~~---------~n~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~e~~~~~p~~~y~~sK~~~e~~l~~~  150 (346)
T 3i6i_A           90 TVGG---------ESILDQIALVKAMKAVGTIKRFLP-SE--FGHDVNRADPVEPGLNMYREKRRVRQLVEES  150 (346)
T ss_dssp             CCCG---------GGGGGHHHHHHHHHHHCCCSEEEC-SC--CSSCTTTCCCCTTHHHHHHHHHHHHHHHHHT
T ss_pred             CCch---------hhHHHHHHHHHHHHHcCCceEEee-cc--cCCCCCccCcCCCcchHHHHHHHHHHHHHHc
Confidence            9987         27888999999999999 999987 43  3332      245578999999999999975

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.84  E-value=4.2e-21  Score=153.23  Aligned_cols=140  Identities=16%  Similarity=0.109  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            456899999999999999999999999999998876433111     1113478899999999999988774       6


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      +|+||||||...          .++..+++|+.+++++++++.    +.+.++||++||...-.+.++...|+.+|+++|
T Consensus       122 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~  201 (285)
T 2c07_A          122 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVI  201 (285)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCCchHHHHHHHHH
Confidence            899999999642          234578999999888877764    456789999999532233455678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       202 ~~~~~l  207 (285)
T 2c07_A          202 GFTKSL  207 (285)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.84  E-value=6.4e-21  Score=152.09  Aligned_cols=140  Identities=14%  Similarity=0.014  Sum_probs=108.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+      ......+.++.+|++|+++++++++       
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999998643211      0112235899999999999888775       


Q ss_pred             CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----cC--CCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KG--VKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 ~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                      ++|++|||||...           .++..+++|+.+++++.+++.+    .+  .++||++||...-.+.++...|+.+|
T Consensus       111 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK  190 (281)
T 4dry_A          111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATK  190 (281)
T ss_dssp             CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTTCHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCCChhHHHHH
Confidence            5799999999642           2245789999999888877643    33  46999999965445566778999999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+.+..
T Consensus       191 aa~~~l~~~l  200 (281)
T 4dry_A          191 HAITGLTKST  200 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.84  E-value=7.3e-21  Score=150.35  Aligned_cols=139  Identities=14%  Similarity=0.099  Sum_probs=110.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   83 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   83 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence            356899999999999999999999999999999998643211  1112578899999999999888775       4799


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      +|||||...          .++..+++|+.+++++.+++.+..  .++||++||...- +.+....|+.+|++++.+.+.
T Consensus        84 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~~~~~Y~asK~a~~~~~~~  162 (263)
T 2a4k_A           84 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAFGLAHYAAGKLGVVGLART  162 (263)
T ss_dssp             EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHHHHHHHHHCSSHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCCCcHHHHHHHHHHHHHHHH
Confidence            999999643          134578999999999999987653  4599999995322 445567899999999998876


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       163 l  163 (263)
T 2a4k_A          163 L  163 (263)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.84  E-value=4.7e-21  Score=151.45  Aligned_cols=138  Identities=12%  Similarity=0.101  Sum_probs=107.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------cc-CCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~-~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+...+      .. ...++.++.+|++|+++++++++       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999999999997543110      00 12368899999999999988775       


Q ss_pred             CCCEEEEccccC--CCCcccchhhHHHHHHHHHHH----HHcC---CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          121 GVTAVISCVGGF--GSNSYMYKINGTANINAIRAA----SEKG---VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       121 ~~d~vi~~ag~~--~~~~~~~~~n~~~~~~~~~~a----~~~~---~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ++|+||||||..  ..++..+++|+.+++.+.+.+    ++.+   .++||++||...-.+.++...|+.+|++++.+.+
T Consensus        86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~  165 (267)
T 2gdz_A           86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTR  165 (267)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCCCchHHHHHHHHHHHHH
Confidence            479999999964  356778999999877655544    4433   5699999995433344556789999999999887


Q ss_pred             h
Q 029008          192 A  192 (200)
Q Consensus       192 ~  192 (200)
                      .
T Consensus       166 ~  166 (267)
T 2gdz_A          166 S  166 (267)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.84  E-value=8.5e-21  Score=149.33  Aligned_cols=140  Identities=17%  Similarity=0.175  Sum_probs=108.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++       
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   91 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   91 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            456899999999999999999999999999999997554211      0113578999999999999888765       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----C-CCEEEEEeccc-c-CcCC-----cCCcc
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAAD-F-GVAN-----YLLQG  178 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~-~~~~v~vSS~~-~-~~~~-----~~~~~  178 (200)
                      .+|+||||||...          .++..+++|+.++.++++++.+.    + .++||++||.. + +.+.     .+...
T Consensus        92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~  171 (265)
T 1h5q_A           92 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVF  171 (265)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCHH
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccccccccccccc
Confidence            4899999999643          12446899999999998887543    3 37999999943 2 2111     12678


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |+.+|+++|.+++..
T Consensus       172 Y~~sK~a~~~~~~~l  186 (265)
T 1h5q_A          172 YNSSKAACSNLVKGL  186 (265)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999998864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.84  E-value=3.7e-20  Score=143.81  Aligned_cols=130  Identities=16%  Similarity=0.224  Sum_probs=98.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      .++|+|+||||+|+||++++++|+++| ++|++++|+.++.. .....+++++.+|++|+++++++++++|+||||+|..
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~   99 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH-KPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGE   99 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC-SSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCST
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc-ccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCC
Confidence            457899999999999999999999999 89999999865532 2334589999999999999999999999999999863


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCCcC--------CcchhhhHHhhHHHHHh
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVANYL--------LQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~~~--------~~~Y~~sK~~~E~~~~~  192 (200)
                      .        ....+.++++++++.++++||++||. .|+.....        ...+...+...|..++.
T Consensus       100 ~--------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (236)
T 3qvo_A          100 D--------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEA  160 (236)
T ss_dssp             T--------HHHHHHHHHHHHHHTTCCEEEEECCCCC----------------CGGGHHHHHHHHHHHT
T ss_pred             c--------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhcccchHHHHHHHHHHHHH
Confidence            2        11345688999999999999999994 34432211        12344556666777665

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.84  E-value=3.1e-20  Score=150.55  Aligned_cols=140  Identities=14%  Similarity=0.113  Sum_probs=111.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--------c---------ccCCCCeeEEEccCCCHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--------R---------DSWANNVIWHQGNLLSSDSWK  116 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~---------~~~~~~~~~~~~Dl~d~~~~~  116 (200)
                      ..+|+++||||+|+||.++++.|+++|++|++++|+.....        +         .....++.++.+|++|+++++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            46789999999999999999999999999999988632210        0         112357899999999999998


Q ss_pred             HHhc-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCc
Q 029008          117 EALD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANY  174 (200)
Q Consensus       117 ~~~~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~-~~~~v~vSS~~~~~~~~  174 (200)
                      ++++       ++|++|||||...          .++..+++|+.+++++++++..    .+ .++||++||...-.+.+
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~  203 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAP  203 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCCT
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCCC
Confidence            8776       6899999999642          2356789999999998888743    33 45899999964444555


Q ss_pred             CCcchhhhHHhhHHHHHhh
Q 029008          175 LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ....|++||++++.+.+..
T Consensus       204 ~~~~Y~asKaa~~~l~~~l  222 (317)
T 3oec_A          204 GQSHYAASKHGVQGLMLSL  222 (317)
T ss_dssp             TBHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHH
Confidence            6789999999999988864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.84  E-value=1.1e-20  Score=150.50  Aligned_cols=140  Identities=13%  Similarity=0.052  Sum_probs=110.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-----------c------ccCCCCeeEEEccCCCHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------R------DSWANNVIWHQGNLLSSDSWK  116 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~------~~~~~~~~~~~~Dl~d~~~~~  116 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.....           +      .....++.++.+|++|+++++
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            46789999999999999999999999999999998732210           0      112357899999999999998


Q ss_pred             HHhc-------CCCEEEEccccCC--------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccc-cC-c------
Q 029008          117 EALD-------GVTAVISCVGGFG--------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAAD-FG-V------  171 (200)
Q Consensus       117 ~~~~-------~~d~vi~~ag~~~--------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~-~~-~------  171 (200)
                      ++++       ++|++|||||...        .++..+++|+.+++++++++....  ..+||++||.. +. .      
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~  167 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPGA  167 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC--
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccccc
Confidence            8776       7899999999643        235678999999999999997753  45999999942 11 1      


Q ss_pred             ---CCcCCcchhhhHHhhHHHHHhh
Q 029008          172 ---ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 ---~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                         +.++...|+.+|++++.+.+..
T Consensus       168 ~~~~~~~~~~Y~asK~a~~~~~~~l  192 (287)
T 3pxx_A          168 GGPQGPGGAGYSYAKQLVDSYTLQL  192 (287)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCccchHHHHHHHHHHHHHHH
Confidence               0134568999999999988864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.84  E-value=1.1e-20  Score=150.36  Aligned_cols=126  Identities=15%  Similarity=0.071  Sum_probs=99.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      .|+|+|+|||| ||||++++++|+++|++|++++|+..... .....+++++.+|+.|.+     +.++|+|||+|+...
T Consensus         3 ~m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~D~~d~~-----~~~~d~vi~~a~~~~   75 (286)
T 3ius_A            3 AMTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQME-AIRASGAEPLLWPGEEPS-----LDGVTHLLISTAPDS   75 (286)
T ss_dssp             --CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHH-HHHHTTEEEEESSSSCCC-----CTTCCEEEECCCCBT
T ss_pred             CCcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhh-hHhhCCCeEEEecccccc-----cCCCCEEEECCCccc
Confidence            36789999998 99999999999999999999999865421 122357999999999854     789999999999765


Q ss_pred             CCcccchhhHHHHHHHHHHHHH--cCCCEEEEEec-cccCcCC----------cCCcchhhhHHhhHHHHHhh
Q 029008          134 SNSYMYKINGTANINAIRAASE--KGVKRFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~--~~~~~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...       ..+.++++++++  .++++|||+|| ..|+...          .+.+.|+.+|+++|++++++
T Consensus        76 ~~~-------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  141 (286)
T 3ius_A           76 GGD-------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAV  141 (286)
T ss_dssp             TBC-------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHHHHHHHHS
T ss_pred             ccc-------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence            332       224678888888  68899999999 4565432          34568999999999999986

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.84  E-value=1.1e-20  Score=150.79  Aligned_cols=140  Identities=10%  Similarity=-0.036  Sum_probs=110.1

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCC--cccc--cCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRS--SLRD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+  |+||.+++++|+++|++|++++|+.+.  ..+.  ....++.++.+|++|+++++++++       
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999  999999999999999999999997631  0000  001247889999999999888775       


Q ss_pred             CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcC---CCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG---VKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 ~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~---~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                      ++|+||||||...              .++..+++|+.+++++++++.+..   .++||++||...-.+.++...|+.+|
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  178 (285)
T 2p91_A           99 SLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPHYNVMGIAK  178 (285)
T ss_dssp             CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCTTTTHHHHHH
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCCCccHHHHHH
Confidence            6899999999642              124568999999999999987653   36999999954333445667899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       179 ~a~~~~~~~l  188 (285)
T 2p91_A          179 AALESTVRYL  188 (285)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988863

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.84  E-value=8.9e-21  Score=150.33  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=106.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||+|+||.+++++|+++|++|+++.++.....+      .....++.++.+|++|+++++++++       +
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  104 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGR  104 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            46799999999999999999999999999887443322111      1123578999999999999888775       6


Q ss_pred             CCEEEEccccCCC-----------CcccchhhHHHHHHHHHHHHHc-------CCCEEEEEeccc-cCcCCcCCcchhhh
Q 029008          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK-------GVKRFVYISAAD-FGVANYLLQGYYEG  182 (200)
Q Consensus       122 ~d~vi~~ag~~~~-----------~~~~~~~n~~~~~~~~~~a~~~-------~~~~~v~vSS~~-~~~~~~~~~~Y~~s  182 (200)
                      +|+||||||....           ++..+++|+.+++++++++.+.       +.++||++||.. +.........|+.+
T Consensus       105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~as  184 (272)
T 4e3z_A          105 LDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAAS  184 (272)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTTCHHHHHH
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCCcchhHHH
Confidence            8999999996431           2457899999999998887543       345899999953 22222345679999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+++..
T Consensus       185 Kaa~~~~~~~l  195 (272)
T 4e3z_A          185 KAAIDTFTIGL  195 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.84  E-value=3.7e-21  Score=156.18  Aligned_cols=140  Identities=12%  Similarity=0.068  Sum_probs=109.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC----------CCccc-----ccCCCCeeEEEccCCCHHHHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG----------RSSLR-----DSWANNVIWHQGNLLSSDSWKEA  118 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~----------~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~  118 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.          +....     .....++.++.+|++|+++++++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            4678999999999999999999999999999999872          11000     11234688999999999998887


Q ss_pred             hc-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC----------CCEEEEEeccccCc
Q 029008          119 LD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG----------VKRFVYISAADFGV  171 (200)
Q Consensus       119 ~~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~----------~~~~v~vSS~~~~~  171 (200)
                      ++       ++|++|||||...          .++..+++|+.+++++++++....          .++||++||...-.
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~  184 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ  184 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence            76       7899999999643          235678999999999988874331          14899999954333


Q ss_pred             CCcCCcchhhhHHhhHHHHHhh
Q 029008          172 ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 ~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +.+....|+.||++++.+++..
T Consensus       185 ~~~~~~~Y~asKaal~~l~~~l  206 (322)
T 3qlj_A          185 GSVGQGNYSAAKAGIATLTLVG  206 (322)
T ss_dssp             CBTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHH
Confidence            4456778999999999998864

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.84  E-value=2.6e-20  Score=149.59  Aligned_cols=140  Identities=11%  Similarity=-0.066  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|  +||.+++++|+++|++|++++|+.+....    ......+.++.+|++|+++++++++       
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4578999999997  99999999999999999999998532111    0112356899999999999988775       


Q ss_pred             CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcCC--CEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~~--~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      ++|++|||||...              .++..+++|+.+++++++++.....  ++||++||...-.+.+....|++||+
T Consensus       108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~~~~~Y~asKa  187 (296)
T 3k31_A          108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVPHYNVMGVCKA  187 (296)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTTTHHHHHHH
T ss_pred             CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCCCchhhHHHHH
Confidence            6899999999642              2345789999999999999976533  49999999644445566789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       188 al~~l~~~l  196 (296)
T 3k31_A          188 ALEASVKYL  196 (296)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.84  E-value=3.5e-22  Score=151.79  Aligned_cols=134  Identities=16%  Similarity=0.084  Sum_probs=107.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHHHhc---CCCEEEEccccC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALD---GVTAVISCVGGF  132 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag~~  132 (200)
                      |+++||||+|+||++++++|+++  +|++++|+.++..... .... +++.+|++|+++++++++   ++|+||||||..
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~   77 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGKA   77 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence            57999999999999999999998  9999999754321100 0012 888999999999999988   899999999964


Q ss_pred             C----------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          133 G----------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       133 ~----------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .          .++..+++|+.++.++++++.+.+.++||++||...-.+.++...|+.+|+++|.+++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~~  148 (207)
T 2yut_A           78 GRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAA  148 (207)
T ss_dssp             CCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHSSTTBHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCcchHHHHHHHHHHHHHHH
Confidence            2          234578999999999999997767789999999543334556789999999999998864

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.83  E-value=3.4e-21  Score=152.02  Aligned_cols=139  Identities=17%  Similarity=0.047  Sum_probs=108.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHH-CCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+++|+||||+|+||.+++++|++ +|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            568999999999999999999999 99999999997543111     0113468899999999999988876       7


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcCC--CEEEEEecc-cc-Cc----------------
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAA-DF-GV----------------  171 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~~--~~~v~vSS~-~~-~~----------------  171 (200)
                      +|+||||||...          .++..+++|+.++.++++++.+...  ++||++||. .+ +.                
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~  162 (276)
T 1wma_A           83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETI  162 (276)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSC
T ss_pred             CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccccc
Confidence            999999999642          1245689999999999999977632  489999994 22 10                


Q ss_pred             -----------------------CCcCCcchhhhHHhhHHHHHhh
Q 029008          172 -----------------------ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 -----------------------~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                             +..+...|+.+|+++|.+++..
T Consensus       163 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~l  207 (276)
T 1wma_A          163 TEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIH  207 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHH
Confidence                                   0123478999999999988763

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.83  E-value=4.9e-20  Score=145.46  Aligned_cols=140  Identities=11%  Similarity=0.003  Sum_probs=111.1

Q ss_pred             CCCCeEEEEccCch--hHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGF--VGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ..+|+++||||+|+  ||.+++++|+++|++|++++|+......      .....++.++.+|++|+++++++++     
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            46789999999977  9999999999999999999987532110      1112378999999999999888775     


Q ss_pred             --CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 --GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 --~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                        ++|++|||||...              .+...+++|+.++.++++++....  .++||++||...-.+.+....|+.|
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  164 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVA  164 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTTHHHHHH
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCCCcchhHHH
Confidence              6899999999643              123467899999999999997653  2489999996444455667889999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+.+..
T Consensus       165 Kaa~~~~~~~l  175 (266)
T 3oig_A          165 KASLDASVKYL  175 (266)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.83  E-value=1.7e-20  Score=147.06  Aligned_cols=136  Identities=16%  Similarity=0.059  Sum_probs=102.6

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh---cCCCEEEEc
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL---DGVTAVISC  128 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vi~~  128 (200)
                      ....+|+++||||+|+||++++++|+++|++|++++|+.+.. +..  ..+.++ +|+  .+++++++   .++|+||||
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~-~~~--~~~~~~-~D~--~~~~~~~~~~~~~iD~lv~~   88 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL-KRS--GHRYVV-CDL--RKDLDLLFEKVKEVDILVLN   88 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHT--CSEEEE-CCT--TTCHHHHHHHSCCCSEEEEC
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-Hhh--CCeEEE-eeH--HHHHHHHHHHhcCCCEEEEC
Confidence            445789999999999999999999999999999999985321 111  356677 999  33444444   489999999


Q ss_pred             cccCC----------CCcccchhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          129 VGGFG----------SNSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       129 ag~~~----------~~~~~~~~n~~~~~~~~~~----a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||...          .++..+++|+.+++++.++    +++.+.++||++||...-.+.++...|+.+|++++.+.+..
T Consensus        89 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l  167 (249)
T 1o5i_A           89 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTL  167 (249)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCCCCCchHHHHHHHHHHHHHHH
Confidence            99542          2345779999998876555    45567789999999543334456688999999999988763

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.83  E-value=4.2e-20  Score=148.54  Aligned_cols=129  Identities=22%  Similarity=0.274  Sum_probs=103.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc----c---ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----R---DSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      +++|+||||+|++|++++++|+++|++|++++|+.....    .   .....+++++.+|++|++++.++++++|+|||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            578999999999999999999999999999999864310    0   112357899999999999999999999999999


Q ss_pred             cccCCCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcCC-------cC-CcchhhhHHhhHHHHHhh
Q 029008          129 VGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVAN-------YL-LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       129 ag~~~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~~~~~-------~~-~~~Y~~sK~~~E~~~~~~  193 (200)
                      ++....     ..|+.++.+++++|++.| +++||+ |+  ||...       .+ ...| .+|.++|+++++.
T Consensus        84 a~~~~~-----~~~~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  148 (313)
T 1qyd_A           84 LAGGVL-----SHHILEQLKLVEAIKEAGNIKRFLP-SE--FGMDPDIMEHALQPGSITF-IDKRKVRRAIEAA  148 (313)
T ss_dssp             CCCSSS-----STTTTTHHHHHHHHHHSCCCSEEEC-SC--CSSCTTSCCCCCSSTTHHH-HHHHHHHHHHHHT
T ss_pred             Cccccc-----hhhHHHHHHHHHHHHhcCCCceEEe-cC--CcCCccccccCCCCCcchH-HHHHHHHHHHHhc
Confidence            987542     236778899999999998 999986 43  33211       12 3457 9999999999875

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.83  E-value=2.1e-20  Score=149.97  Aligned_cols=140  Identities=9%  Similarity=-0.024  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCch--hHHHHHHHHHHCCCcEEEeecCCCCcc--c--ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGF--VGSHICREALDRGLTVASLSRSGRSSL--R--DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~--iG~~l~~~L~~~g~~V~~~~r~~~~~~--~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|+  ||.+++++|+++|++|++++|+.....  .  .....++.++.+|++|+++++++++       
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46789999999977  999999999999999999998742110  0  0112468899999999999988775       


Q ss_pred             CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      ++|++|||||...              .++..+++|+.+++++++++.+..  .++||++||.....+.+....|+.||+
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~Y~asKa  188 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMPNYNVMGVAKA  188 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCTTTTHHHHHHH
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCCchHHHHHHHH
Confidence            6899999999642              234578999999999999987643  349999999644445566789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       189 a~~~l~~~l  197 (293)
T 3grk_A          189 ALEASVKYL  197 (293)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.83  E-value=1.4e-20  Score=151.23  Aligned_cols=139  Identities=17%  Similarity=0.081  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------c----cCCCCeeEEEccCCCHHHHHHHhc---
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D----SWANNVIWHQGNLLSSDSWKEALD---  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~----~~~~~~~~~~~Dl~d~~~~~~~~~---  120 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+....      .    ....++.++.+|++|+++++++++   
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999999999999998543110      0    123578999999999999988776   


Q ss_pred             ----CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 ----GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 ----~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                          ++|+||||||...          .++..+++|+.++.++++++.+    .+.++||++||.. ..+.+....|+.+
T Consensus        96 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~~~~~Y~~s  174 (303)
T 1yxm_A           96 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPLAVHSGAA  174 (303)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCTTCHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCCcchhhHHH
Confidence                4899999999532          1245689999999999999755    2356899999965 3344556789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++.+.+.+..
T Consensus       175 K~a~~~~~~~l  185 (303)
T 1yxm_A          175 RAGVYNLTKSL  185 (303)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888753

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.83  E-value=9.2e-21  Score=149.45  Aligned_cols=140  Identities=11%  Similarity=0.032  Sum_probs=109.9

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCc--ccc--cCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LRD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+  |+||++++++|+++|++|++++|+.+..  .+.  .....+.++.+|++|+++++++++       
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356899999999  9999999999999999999999976310  010  001247899999999999988776       


Q ss_pred             CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      ++|+||||||...              .++..+++|+.+++++++++.+..  .++||++||...-.+.++...|+.+|+
T Consensus        86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  165 (261)
T 2wyu_A           86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKA  165 (261)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTCHHHHHHHH
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCCCchHHHHHHH
Confidence            6899999999642              124578999999999999997652  258999999543334455678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+++..
T Consensus       166 a~~~~~~~l  174 (261)
T 2wyu_A          166 ALEASVRYL  174 (261)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.83  E-value=1.8e-20  Score=149.61  Aligned_cols=140  Identities=15%  Similarity=0.092  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+.+...+      .....++.++.+|++|+++++++++       
T Consensus        26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999999999999999998543211      0112368899999999998887765       


Q ss_pred             CCCEEEEc-cccCC---------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          121 GVTAVISC-VGGFG---------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       121 ~~d~vi~~-ag~~~---------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      ++|+|||| +|...         .++..+++|+.++.++++++...   +.++||++||.....+.++...|+.||+++|
T Consensus       106 ~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~  185 (286)
T 1xu9_A          106 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALD  185 (286)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCCCccHHHHHHHHHH
Confidence            68999999 56432         12456899999999988887542   3469999999643344556789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+++..
T Consensus       186 ~~~~~l  191 (286)
T 1xu9_A          186 GFFSSI  191 (286)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988763

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.83  E-value=9.1e-21  Score=146.11  Aligned_cols=125  Identities=11%  Similarity=0.036  Sum_probs=104.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag  130 (200)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.+               +|++|+++++++++   ++|++|||||
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---------------~D~~~~~~v~~~~~~~g~id~lv~nAg   68 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG---------------LDISDEKSVYHYFETIGAFDHLIVTAG   68 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT---------------CCTTCHHHHHHHHHHHCSEEEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc---------------cCCCCHHHHHHHHHHhCCCCEEEECCC
Confidence            35689999999999999999999999999999998743               79999999998876   6899999999


Q ss_pred             cCC-----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          131 GFG-----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~-----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...           .++..+++|+.+++++++++.+..  .++||++||.....+.++...|+.+|++++.+.+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~asK~a~~~~~~~l  144 (223)
T 3uce_A           69 SYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVANTYVKAAINAAIEATTKVL  144 (223)
T ss_dssp             CCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCCCchHHHHHHHHHHHHHHHH
Confidence            652           134568999999999999997653  248999999654445566789999999999988864

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.83  E-value=1.2e-20  Score=151.18  Aligned_cols=140  Identities=16%  Similarity=0.103  Sum_probs=110.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEee-cCCCCccc---c---cCCCCeeEEEccCCCHH-------------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLR---D---SWANNVIWHQGNLLSSD-------------  113 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~---~---~~~~~~~~~~~Dl~d~~-------------  113 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++ |+.+....   .   ....++.++.+|++|++             
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV   86 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccccccc
Confidence            3568999999999999999999999999999999 77533111   0   12357899999999998             


Q ss_pred             ----HHHHHhc-------CCCEEEEccccCC------------------------CCcccchhhHHHHHHHHHHHH----
Q 029008          114 ----SWKEALD-------GVTAVISCVGGFG------------------------SNSYMYKINGTANINAIRAAS----  154 (200)
Q Consensus       114 ----~~~~~~~-------~~d~vi~~ag~~~------------------------~~~~~~~~n~~~~~~~~~~a~----  154 (200)
                          +++++++       ++|++|||||...                        .++..+++|+.+++.+++++.    
T Consensus        87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~  166 (291)
T 1e7w_A           87 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  166 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                8887765       6899999999532                        123567899999999888875    


Q ss_pred             HcC------CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          155 EKG------VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       155 ~~~------~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +.+      .++||++||.....+.+....|+++|++++.+.+..
T Consensus       167 ~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~l  211 (291)
T 1e7w_A          167 GTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSA  211 (291)
T ss_dssp             TSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCCCcEEEEEechhhcCCCCCCchhHHHHHHHHHHHHHH
Confidence            334      579999999644445566789999999999988863

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.83  E-value=1.7e-20  Score=149.02  Aligned_cols=139  Identities=12%  Similarity=-0.016  Sum_probs=110.0

Q ss_pred             CCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCc--ccc--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LRD--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||+  |+||.+++++|+++|++|++++|+.+..  .+.  ....++.++.+|++|+++++++++       +
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999  9999999999999999999999986411  010  001247899999999999888775       6


Q ss_pred             CCEEEEccccCCC--------------CcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          122 VTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       122 ~d~vi~~ag~~~~--------------~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|++|||||....              ++..+++|+.+++++++++.+.-  .++||++||.....+.++...|+.+|++
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  164 (275)
T 2pd4_A           85 LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAA  164 (275)
T ss_dssp             EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHHHHHHH
T ss_pred             CCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCCCchhhHHHHHH
Confidence            8999999996431              24578999999999999997652  2589999995433444566789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       165 ~~~~~~~l  172 (275)
T 2pd4_A          165 LESAVRYL  172 (275)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988864

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.83  E-value=1.8e-20  Score=148.02  Aligned_cols=139  Identities=12%  Similarity=-0.011  Sum_probs=108.8

Q ss_pred             CCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCcc--cc--cCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           55 PSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSSL--RD--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~--~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .+|+++||||+  |+||.+++++|+++|++|++++|+.....  +.  .......++.+|++|+++++++++       +
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999  99999999999999999999999862110  00  011234789999999999988776       6


Q ss_pred             CCEEEEccccCC---------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          122 VTAVISCVGGFG---------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~---------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      +|+||||||...               .++..+++|+.+++++++++.+..  .++||++||...-.+.++...|+.+|+
T Consensus        88 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  167 (265)
T 1qsg_A           88 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKA  167 (265)
T ss_dssp             EEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHHHHH
T ss_pred             CCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCCCchHHHHHHH
Confidence            899999999643               123468999999999999997652  258999999543334456678999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+++..
T Consensus       168 a~~~~~~~l  176 (265)
T 1qsg_A          168 SLEANVRYM  176 (265)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.83  E-value=2.2e-20  Score=147.49  Aligned_cols=142  Identities=10%  Similarity=-0.049  Sum_probs=112.7

Q ss_pred             CCCCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           52 PPPPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ....+|+++||||+  |+||.+++++|+++|++|++++|+......    .....++.++.+|++|+++++++++     
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            44678999999998  999999999999999999999988432110    0112358899999999999988876     


Q ss_pred             --CCCEEEEccccCCC---------------CcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhh
Q 029008          121 --GVTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYE  181 (200)
Q Consensus       121 --~~d~vi~~ag~~~~---------------~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~  181 (200)
                        ++|++|||||....               ++..+++|+.+++++++++...-  .++||++||.....+.+....|+.
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  169 (271)
T 3ek2_A           90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGL  169 (271)
T ss_dssp             CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHH
T ss_pred             cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCCCccchhH
Confidence              57999999996421               23467999999999999987652  348999999654455566789999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|++++.+.+..
T Consensus       170 sKaa~~~~~~~l  181 (271)
T 3ek2_A          170 AKAALEASVRYL  181 (271)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988864

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.83  E-value=3e-20  Score=146.68  Aligned_cols=140  Identities=14%  Similarity=0.122  Sum_probs=112.0

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc----
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      ..+|+++||||+  |+||.+++++|+++|++|++++|+.....+       .....++.++.+|++|+++++++++    
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            467899999999  899999999999999999999988655311       1124578999999999999888775    


Q ss_pred             ---CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEecccc--CcCCcCCcchhh
Q 029008          121 ---GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADF--GVANYLLQGYYE  181 (200)
Q Consensus       121 ---~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~--~~~~~~~~~Y~~  181 (200)
                         ++|++|||||...          .++..+++|+.+++++++++    ++.+.++||++||...  +...++...|+.
T Consensus        98 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~  177 (267)
T 3gdg_A           98 DFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNV  177 (267)
T ss_dssp             HTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSSSCCHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCCCCCCcchH
Confidence               5799999999643          23457899999999988887    4556679999999532  222246678999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|++.+.+++..
T Consensus       178 sK~a~~~~~~~l  189 (267)
T 3gdg_A          178 AKAGCIHMARSL  189 (267)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.83  E-value=5.5e-20  Score=146.96  Aligned_cols=140  Identities=14%  Similarity=0.150  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC-CCccc---c---cCCCCeeEEEccCCC----HHHHHHHhc--
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSSLR---D---SWANNVIWHQGNLLS----SDSWKEALD--  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~---~---~~~~~~~~~~~Dl~d----~~~~~~~~~--  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+. +...+   .   ....++.++.+|++|    +++++++++  
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999986 32110   0   123578999999999    888887765  


Q ss_pred             -----CCCEEEEccccCCC--------------------CcccchhhHHHHHHHHHHHHHc----C------CCEEEEEe
Q 029008          121 -----GVTAVISCVGGFGS--------------------NSYMYKINGTANINAIRAASEK----G------VKRFVYIS  165 (200)
Q Consensus       121 -----~~d~vi~~ag~~~~--------------------~~~~~~~n~~~~~~~~~~a~~~----~------~~~~v~vS  165 (200)
                           ++|+||||||....                    ++..+++|+.+++.+++++...    +      .++||++|
T Consensus       101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~is  180 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLC  180 (288)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEEC
T ss_pred             HHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEe
Confidence                 68999999996321                    1245789999999998887543    2      45899999


Q ss_pred             ccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          166 AADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       166 S~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...-.+.++...|+.||++++.+.+..
T Consensus       181 S~~~~~~~~~~~~Y~asKaa~~~l~~~l  208 (288)
T 2x9g_A          181 DAMVDQPCMAFSLYNMGKHALVGLTQSA  208 (288)
T ss_dssp             CTTTTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCCchHHHHHHHHHHHHHHH
Confidence            9644445556778999999999988863

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.82  E-value=2.1e-20  Score=153.99  Aligned_cols=112  Identities=14%  Similarity=0.105  Sum_probs=98.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC--
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~--  133 (200)
                      |+|+||||+|+||++|+++|+++|+ +|++++|+                    .|+++++++++++|+|||+||...  
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~--------------------~d~~~l~~~~~~~d~Vih~a~~~~~~   60 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ--------------------TKEEELESALLKADFIVHLAGVNRPE   60 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT--------------------CCHHHHHHHHHHCSEEEECCCSBCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC--------------------CCHHHHHHHhccCCEEEECCcCCCCC
Confidence            5899999999999999999999998 88777664                    678999999999999999999653  


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCC-EEEEEecc-ccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVK-RFVYISAA-DFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS~-~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+...+++|+.++.+++++|++.+++ +||++||. .|+     .+.|+.+|+++|++++++
T Consensus        61 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~-----~~~Y~~sK~~~E~~~~~~  117 (369)
T 3st7_A           61 HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ-----DNPYGESKLQGEQLLREY  117 (369)
T ss_dssp             CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-----CSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-----CCCchHHHHHHHHHHHHH
Confidence            45678899999999999999999987 99999994 344     678999999999999874

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.82  E-value=5.6e-20  Score=150.66  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=107.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-----CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcC---CCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-----LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG---VTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~d~vi~  127 (200)
                      +|+|+||||+||||++++++|+++|     ++|++++|+.....  ....+++++.+|++|++.+.+++++   +|+|||
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih   78 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW--HEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFY   78 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC--CCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc--cccCceEEEEeecCCHHHHHHHHhcCCCCCEEEE
Confidence            3689999999999999999999999     99999999866532  2235789999999999999999998   999999


Q ss_pred             ccccCC-CCcccchhhHHHHHHHHHHHHHc--CCCEEE-------EEec-cccCcCC-------------cCCcchhhhH
Q 029008          128 CVGGFG-SNSYMYKINGTANINAIRAASEK--GVKRFV-------YISA-ADFGVAN-------------YLLQGYYEGK  183 (200)
Q Consensus       128 ~ag~~~-~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v-------~vSS-~~~~~~~-------------~~~~~Y~~sK  183 (200)
                      +||... ++...+++|+.++.+++++|++.  ++++||       |+|| ..||...             ++.+.|    
T Consensus        79 ~a~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~~~~~y----  154 (364)
T 2v6g_A           79 VTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFY----  154 (364)
T ss_dssp             CCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCCSSCCHH----
T ss_pred             CCCCCcchHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccccCCccchhh----
Confidence            999754 45668899999999999999988  788998       7888 4465421             113456    


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      +++|++++++
T Consensus       155 ~~~E~~~~~~  164 (364)
T 2v6g_A          155 YDLEDIMLEE  164 (364)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4577777764

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.82  E-value=1.9e-20  Score=152.46  Aligned_cols=140  Identities=16%  Similarity=0.103  Sum_probs=109.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEee-cCCCCccc---c---cCCCCeeEEEccCCCHH-------------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLR---D---SWANNVIWHQGNLLSSD-------------  113 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~---~---~~~~~~~~~~~Dl~d~~-------------  113 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++ |+.+...+   .   ....++.++.+|++|++             
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~  123 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV  123 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCB
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccccc
Confidence            3568999999999999999999999999999999 76533111   0   12357899999999998             


Q ss_pred             ----HHHHHhc-------CCCEEEEccccCC------------------------CCcccchhhHHHHHHHHHHHH----
Q 029008          114 ----SWKEALD-------GVTAVISCVGGFG------------------------SNSYMYKINGTANINAIRAAS----  154 (200)
Q Consensus       114 ----~~~~~~~-------~~d~vi~~ag~~~------------------------~~~~~~~~n~~~~~~~~~~a~----  154 (200)
                          +++++++       ++|+||||||...                        .++..+++|+.+++++++++.    
T Consensus       124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~  203 (328)
T 2qhx_A          124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  203 (328)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                8887775       6899999999632                        113467899999999888875    


Q ss_pred             HcC------CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          155 EKG------VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       155 ~~~------~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +.+      .++||++||.....+.++...|+.+|++++.+.+..
T Consensus       204 ~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~l  248 (328)
T 2qhx_A          204 GTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSA  248 (328)
T ss_dssp             HSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcCCCCCcEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            334      579999999644444556789999999999998864

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.82  E-value=2.8e-20  Score=145.72  Aligned_cols=140  Identities=18%  Similarity=0.103  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhcC------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALDG------  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~~------  121 (200)
                      ..+|+++||||+|+||.+++++|+++|++|+++.++.....+      .....++.++.+|++|.++++++++.      
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999999999987554433111      11245788999999999888877642      


Q ss_pred             -------CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhh
Q 029008          122 -------VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       122 -------~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                             +|++|||||...          .++..+++|+.+++++++++.+.  +.++||++||...-.+.+....|+.+
T Consensus        85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~as  164 (255)
T 3icc_A           85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMT  164 (255)
T ss_dssp             HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCCCcchhHHh
Confidence                   899999999642          12456889999999999998765  33589999996444455667889999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++.+.+.+..
T Consensus       165 Kaa~~~~~~~l  175 (255)
T 3icc_A          165 KGAINTMTFTL  175 (255)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.82  E-value=1.9e-19  Score=141.71  Aligned_cols=141  Identities=10%  Similarity=-0.055  Sum_probs=110.1

Q ss_pred             CCCCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCCcc------cccCCCCeeEEEccCCCHHHHHHHhc----
Q 029008           53 PPPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      ..++|+++||||+|  +||.++++.|+++|++|++.+|+.+...      +.....++.++++|++|+++++++++    
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            35789999999876  9999999999999999999999865421      12223478999999999999887765    


Q ss_pred             ---CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhh
Q 029008          121 ---GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYE  181 (200)
Q Consensus       121 ---~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~  181 (200)
                         ++|++|||||...              .+...+++|+.+.+.+.+++....  ..+||++||...-.+.+....|+.
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~~~~~Y~a  162 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGV  162 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCTTTHHHHH
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcccchhhHH
Confidence               5899999998532              112345788888888888775442  358999999654555666789999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      ||++++.+.+..
T Consensus       163 sKaal~~ltr~l  174 (256)
T 4fs3_A          163 AKASLEANVKYL  174 (256)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988863

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.82  E-value=2.7e-20  Score=148.11  Aligned_cols=140  Identities=16%  Similarity=0.107  Sum_probs=110.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc------CCCEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD------GVTAV  125 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d~v  125 (200)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+...+  .....++.++.+|++|.++++++++      ++|++
T Consensus        28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            357899999999999999999999999999999998654211  1124578999999999999998776      57999


Q ss_pred             EEcc-ccCC---------------CCcccchhhHHHHHHHHHHHHH----------cCCCEEEEEeccccCcCCcCCcch
Q 029008          126 ISCV-GGFG---------------SNSYMYKINGTANINAIRAASE----------KGVKRFVYISAADFGVANYLLQGY  179 (200)
Q Consensus       126 i~~a-g~~~---------------~~~~~~~~n~~~~~~~~~~a~~----------~~~~~~v~vSS~~~~~~~~~~~~Y  179 (200)
                      |||+ |...               .++..+++|+.+++++.+++..          .+.++||++||...-.+.+....|
T Consensus       108 v~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  187 (281)
T 3ppi_A          108 VVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAY  187 (281)
T ss_dssp             EECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCCTTCHHH
T ss_pred             EEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCCCCCccc
Confidence            9994 4311               1356789999999999888753          234589999996544455667899


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|++++.+.+..
T Consensus       188 ~asKaa~~~~~~~l  201 (281)
T 3ppi_A          188 AAAKAGVIGLTIAA  201 (281)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988763

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.82  E-value=2.1e-20  Score=147.06  Aligned_cols=140  Identities=14%  Similarity=0.060  Sum_probs=109.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHH---CCCcEEEeecCCCCccc---cc----CCCCeeEEEccCCCHHHHHHHhc---
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGRSSLR---DS----WANNVIWHQGNLLSSDSWKEALD---  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~---~~----~~~~~~~~~~Dl~d~~~~~~~~~---  120 (200)
                      ..+|+++||||+|+||.+++++|++   +|++|++++|+.+...+   ..    ...++.++.+|++|+++++++++   
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999999   89999999997543111   00    13468899999999998887653   


Q ss_pred             ------CCC--EEEEccccCC-------------CCcccchhhHHHHHHHHHHHHHc------CCCEEEEEeccccCcCC
Q 029008          121 ------GVT--AVISCVGGFG-------------SNSYMYKINGTANINAIRAASEK------GVKRFVYISAADFGVAN  173 (200)
Q Consensus       121 ------~~d--~vi~~ag~~~-------------~~~~~~~~n~~~~~~~~~~a~~~------~~~~~v~vSS~~~~~~~  173 (200)
                            ++|  ++|||||...             .++..+++|+.+++++++++.+.      +.++||++||...-.+.
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~~  163 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPY  163 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCC
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCCC
Confidence                  368  9999999632             12346799999999999998654      23579999996433455


Q ss_pred             cCCcchhhhHHhhHHHHHhh
Q 029008          174 YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ++...|+.||++++.+.+..
T Consensus       164 ~~~~~Y~asKaa~~~~~~~l  183 (259)
T 1oaa_A          164 KGWGLYCAGKAARDMLYQVL  183 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHH
Confidence            66788999999999998864

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.81  E-value=6.7e-20  Score=145.08  Aligned_cols=139  Identities=13%  Similarity=0.018  Sum_probs=109.9

Q ss_pred             CCCCeEEEEcc--CchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc--------
Q 029008           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD--------  120 (200)
Q Consensus        54 ~~~~~ilVtGa--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~--------  120 (200)
                      ..+|+++||||  +|+||.+++++|+++|++|++++|+.++..+   .....++.++.+|++|+++++++++        
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35689999999  9999999999999999999999997643111   1123468899999999999988776        


Q ss_pred             --CCCEEEEccccCC---------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhh
Q 029008          121 --GVTAVISCVGGFG---------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYE  181 (200)
Q Consensus       121 --~~d~vi~~ag~~~---------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~  181 (200)
                        ++|++|||||...               .++..+++|+.+++++++++.+.-  .++||++||... .+.+....|+.
T Consensus        85 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~-~~~~~~~~Y~a  163 (269)
T 2h7i_A           85 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-RAMPAYNWMTV  163 (269)
T ss_dssp             TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-SCCTTTHHHHH
T ss_pred             CCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-cccCchHHHHH
Confidence              7899999999643               123467899999999999997542  258999998532 34455678999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|++++.+.+..
T Consensus       164 sKaa~~~l~~~l  175 (269)
T 2h7i_A          164 AKSALESVNRFV  175 (269)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988863

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.81  E-value=1.3e-19  Score=144.33  Aligned_cols=140  Identities=12%  Similarity=-0.002  Sum_probs=110.1

Q ss_pred             CCCCeEEEEccCch--hHHHHHHHHHHCCCcEEEeecCCCCcc-c--ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGF--VGSHICREALDRGLTVASLSRSGRSSL-R--DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~--iG~~l~~~L~~~g~~V~~~~r~~~~~~-~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..+|+++||||+|+  ||.+++++|+++|++|++++|+..... +  .....++.++.+|++|+++++++++       +
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            45789999999955  999999999999999999999862110 0  1112458899999999999888775       4


Q ss_pred             CCEEEEccccCCC---------------CcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          122 VTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       122 ~d~vi~~ag~~~~---------------~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                      +|++|||||....               ++..+++|+.++.++++++...   ..++||++||.....+.+....|+.+|
T Consensus       104 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  183 (280)
T 3nrc_A          104 LDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAK  183 (280)
T ss_dssp             CCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCTTTHHHHHHH
T ss_pred             CCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCCCchhhHHHH
Confidence            7999999996431               2346799999999999988653   346999999965445556678999999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       184 aal~~~~~~l  193 (280)
T 3nrc_A          184 ASLEATVRYT  193 (280)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998863

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.81  E-value=7.1e-20  Score=144.22  Aligned_cols=138  Identities=12%  Similarity=0.025  Sum_probs=105.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---c--cCCCCeeEEEccCCCHHHHHHHhc--------C
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD--------G  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~--------~  121 (200)
                      .+|+++||||+|+||.+++++|+++|++|++++|+.+...+   .  ....++.++.+|++|+++++++++        +
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999997543211   0  013468899999999988877653        5


Q ss_pred             CCEEEEccc--cC-------C--------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchh
Q 029008          122 VTAVISCVG--GF-------G--------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYY  180 (200)
Q Consensus       122 ~d~vi~~ag--~~-------~--------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~  180 (200)
                      +|++|||||  ..       .        .++..+++|+.+++++.+++.    +.+.++||++||...- ...+...|+
T Consensus        84 id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-~~~~~~~Y~  162 (260)
T 2qq5_A           84 LDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL-QYMFNVPYG  162 (260)
T ss_dssp             CCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGT-SCCSSHHHH
T ss_pred             ceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhc-CCCCCCchH
Confidence            799999994  21       1        134567899999987766653    4566899999995321 223457899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .||++++.+.+..
T Consensus       163 asK~a~~~~~~~l  175 (260)
T 2qq5_A          163 VGKAACDKLAADC  175 (260)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998864

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.81  E-value=2.1e-19  Score=144.14  Aligned_cols=125  Identities=27%  Similarity=0.355  Sum_probs=99.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC-Cc-----cc---ccCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR-SS-----LR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~-~~-----~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      +++|+||||+|++|++++++|+++|++|++++|+.. ..     ..   .....+++++.+|++|++++.++++++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999999999999999999999999999999861 10     00   0112478999999999999999999999999


Q ss_pred             EccccCCCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcC------CcC-CcchhhhHHhhHHHHHhh
Q 029008          127 SCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVA------NYL-LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       127 ~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~~~~------~~~-~~~Y~~sK~~~E~~~~~~  193 (200)
                      |++|...         +.++.+++++|++.| +++||+ |+  ||..      ..+ ...| .+|+++|+++++.
T Consensus        82 ~~a~~~~---------~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  143 (307)
T 2gas_A           82 CAAGRLL---------IEDQVKIIKAIKEAGNVKKFFP-SE--FGLDVDRHDAVEPVRQVF-EEKASIRRVIEAE  143 (307)
T ss_dssp             ECSSSSC---------GGGHHHHHHHHHHHCCCSEEEC-SC--CSSCTTSCCCCTTHHHHH-HHHHHHHHHHHHH
T ss_pred             ECCcccc---------cccHHHHHHHHHhcCCceEEee-cc--cccCcccccCCCcchhHH-HHHHHHHHHHHHc
Confidence            9998643         456788999999998 999984 43  3321      112 3468 9999999999875

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.80  E-value=1.1e-19  Score=146.62  Aligned_cols=126  Identities=24%  Similarity=0.298  Sum_probs=100.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc---cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD---SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++++|+||||+|++|++++++|+++|++|++++|+.......   ....+++++.+|++|++++.++++++|+|||+++.
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            456899999999999999999999999999999987532111   11357899999999999999999999999999986


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcC-C-----cC-CcchhhhHHhhHHHHHhh
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVA-N-----YL-LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~~~~-~-----~~-~~~Y~~sK~~~E~~~~~~  193 (200)
                      ..         +.++.+++++|++.| +++||+ |+  ||.. +     .+ ...| .+|.++|+++++.
T Consensus        90 ~~---------~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  146 (318)
T 2r6j_A           90 PQ---------ILDQFKILEAIKVAGNIKRFLP-SD--FGVEEDRINALPPFEALI-ERKRMIRRAIEEA  146 (318)
T ss_dssp             GG---------STTHHHHHHHHHHHCCCCEEEC-SC--CSSCTTTCCCCHHHHHHH-HHHHHHHHHHHHT
T ss_pred             hh---------hHHHHHHHHHHHhcCCCCEEEe-ec--cccCcccccCCCCcchhH-HHHHHHHHHHHhc
Confidence            32         345688999999998 999985 43  3421 1     11 2457 9999999999875

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.80  E-value=1.9e-19  Score=144.44  Aligned_cols=125  Identities=30%  Similarity=0.397  Sum_probs=99.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc--cc------ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LR------DSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      +++|+||||+|++|++++++|+++|++|++++|+....  .+      .....+++++.+|++|++++.++++++|+|||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            57899999999999999999999999999999986432  00      11235789999999999999999999999999


Q ss_pred             ccccCCCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcC-C-----cC-CcchhhhHHhhHHHHHhh
Q 029008          128 CVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVA-N-----YL-LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       128 ~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~~~~-~-----~~-~~~Y~~sK~~~E~~~~~~  193 (200)
                      +++...         +.++.+++++|+++| +++||+ |+  ||.. .     .+ ...| .+|.++|+++++.
T Consensus        84 ~a~~~~---------~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  144 (308)
T 1qyc_A           84 TVGSLQ---------IESQVNIIKAIKEVGTVKRFFP-SE--FGNDVDNVHAVEPAKSVF-EVKAKVRRAIEAE  144 (308)
T ss_dssp             CCCGGG---------SGGGHHHHHHHHHHCCCSEEEC-SC--CSSCTTSCCCCTTHHHHH-HHHHHHHHHHHHH
T ss_pred             CCcchh---------hhhHHHHHHHHHhcCCCceEee-cc--cccCccccccCCcchhHH-HHHHHHHHHHHhc
Confidence            998632         345678999999998 999984 44  3321 1     12 2457 9999999999875

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.80  E-value=1.9e-19  Score=145.47  Aligned_cols=126  Identities=24%  Similarity=0.276  Sum_probs=99.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC-CCc----cc---ccCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSS----LR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~----~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      ++++|+||||+|++|++++++|+++|++|++++|+. ...    ..   .....+++++.+|++|++++.++++++|+||
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi   82 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI   82 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence            467899999999999999999999999999999986 211    00   0113578999999999999999999999999


Q ss_pred             EccccCCCCcccchhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcC------CcC-CcchhhhHHhhHHHHHhh
Q 029008          127 SCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVA------NYL-LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       127 ~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~~~~------~~~-~~~Y~~sK~~~E~~~~~~  193 (200)
                      |+++...         +.++.+++++|++.| +++||+ |+  ||..      ..+ ...| .+|+++|+++++.
T Consensus        83 ~~a~~~~---------~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  144 (321)
T 3c1o_A           83 SALPFPM---------ISSQIHIINAIKAAGNIKRFLP-SD--FGCEEDRIKPLPPFESVL-EKKRIIRRAIEAA  144 (321)
T ss_dssp             ECCCGGG---------SGGGHHHHHHHHHHCCCCEEEC-SC--CSSCGGGCCCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred             ECCCccc---------hhhHHHHHHHHHHhCCccEEec-cc--cccCccccccCCCcchHH-HHHHHHHHHHHHc
Confidence            9998642         455678999999998 999983 33  3421      112 3468 9999999999875

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.79  E-value=1.2e-19  Score=142.52  Aligned_cols=136  Identities=13%  Similarity=-0.039  Sum_probs=98.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHH----HHhcCCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWK----EALDGVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~----~~~~~~d~vi~  127 (200)
                      ||+++||||+|+||.+++++|+++|++|++++|+.+.....    ....++.++  |..+.+.+-    +.+.++|++||
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~lv~   78 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVLVS   78 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEEEE
Confidence            47899999999999999999999999999999976542110    001233333  444432222    12337999999


Q ss_pred             ccccC-C----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          128 CVGGF-G----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       128 ~ag~~-~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      |||.. .          .++..+++|+.+++++.+++.    +.+.++||++||...-.+.++...|+.+|++++.+.+.
T Consensus        79 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  158 (254)
T 1zmt_A           79 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANA  158 (254)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCCCchHHHHHHHHHHHHHHH
Confidence            99965 2          234578999999999888874    45667999999954334445677899999999998886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       159 l  159 (254)
T 1zmt_A          159 L  159 (254)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.79  E-value=5.7e-20  Score=143.50  Aligned_cols=138  Identities=14%  Similarity=0.031  Sum_probs=95.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH---HHh---cCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EAL---DGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~---~~~d~vi~  127 (200)
                      .++|+++||||+|+||.+++++|++ |++|++++|+.+.........++.++.+|+.+.+..+   +.+   .++|++||
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            3578999999999999999999987 9999999997654222222357899999998875422   122   26899999


Q ss_pred             ccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          128 CVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       128 ~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |||...          .++..+++|+.++.++.+++.    +.+ ++||++||...-.+.+....|+.||++++.+++..
T Consensus        82 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l  160 (245)
T 3e9n_A           82 AAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPHPGNTIYAASKHALRGLADAF  160 (245)
T ss_dssp             CC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC----------CHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCCCCchHHHHHHHHHHHHHHHH
Confidence            999642          234678999999988888764    334 69999999543344566789999999999998864

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.78  E-value=1.1e-18  Score=149.73  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=111.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc--c------ccCCCCeeEEEccCCCHHHHHHHhcC--C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL--R------DSWANNVIWHQGNLLSSDSWKEALDG--V  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--~------~~~~~~~~~~~~Dl~d~~~~~~~~~~--~  122 (200)
                      ..+++++||||+|+||.+++++|+++|+ +|++++|+.....  .      .....++.++.+|++|++++++++++  +
T Consensus       257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~l  336 (511)
T 2z5l_A          257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPP  336 (511)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCC
Confidence            3568999999999999999999999999 5888888753210  0      11234689999999999999999975  9


Q ss_pred             CEEEEccccCCC----------CcccchhhHHHHHHHHHHHHHc-CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK-GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       123 d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      |+||||||....          ++..+++|+.++.++.+++... +.++||++||...-........|+++|++.|.+.+
T Consensus       337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g~~~YaaaKa~ld~la~  416 (511)
T 2z5l_A          337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAGQGAYAAANAALDALAE  416 (511)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTTBHHHHHHHHHHHHHHH
T ss_pred             cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            999999996532          2346789999999999998776 77899999995322334556789999999999887


Q ss_pred             h
Q 029008          192 A  192 (200)
Q Consensus       192 ~  192 (200)
                      .
T Consensus       417 ~  417 (511)
T 2z5l_A          417 R  417 (511)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.78  E-value=3.2e-19  Score=151.10  Aligned_cols=140  Identities=14%  Similarity=0.034  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-c-ccCCCCeeEEEccCCCHHHHHHHhc-------C-CC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-R-DSWANNVIWHQGNLLSSDSWKEALD-------G-VT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~-~~~~~~~~~~~~Dl~d~~~~~~~~~-------~-~d  123 (200)
                      ..+++++||||+|+||.+++++|+++|++|++++|+..... . .....++.++.+|++|+++++++++       + +|
T Consensus       211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            36789999999999999999999999999999988643211 0 0111256789999999999888765       3 99


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~----~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +||||||...          .++..+++|+.+++++.+++...    +.++||++||...-.+......|+++|++.+.+
T Consensus       291 ~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g~~~YaasKaal~~l  370 (454)
T 3u0b_A          291 ILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGL  370 (454)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTTCHHHHHHHHHHHHH
T ss_pred             EEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCCCHHHHHHHHHHHHH
Confidence            9999999653          23467899999999999998765    567999999954334445678999999999888


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       371 ~~~l  374 (454)
T 3u0b_A          371 AEAL  374 (454)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.78  E-value=8.6e-19  Score=149.62  Aligned_cols=139  Identities=22%  Similarity=0.244  Sum_probs=111.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCc-EEEeecCCCCcc--c------ccCCCCeeEEEccCCCHHHHHHHhcCC--
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSL--R------DSWANNVIWHQGNLLSSDSWKEALDGV--  122 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~--~------~~~~~~~~~~~~Dl~d~~~~~~~~~~~--  122 (200)
                      ..+++++||||+|+||.+++++|+++|++ |++++|+.....  .      .....++.++.+|++|+++++++++.+  
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~  303 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD  303 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence            35789999999999999999999999995 899999764211  0      112357899999999999999998764  


Q ss_pred             ----CEEEEccccCCC----------CcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          123 ----TAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       123 ----d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                          |+||||||...+          +...+++|+.++.++.+++.+.+.++||++||...-........|+++|...+.
T Consensus       304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~g~~~Yaaaka~l~~  383 (486)
T 2fr1_A          304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYLDG  383 (486)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTCTTTHHHHHHHHH
T ss_pred             cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCCCCHHHHHHHHHHHH
Confidence                999999996532          235678999999999999988888999999995322233456789999999998


Q ss_pred             HHHh
Q 029008          189 PLLA  192 (200)
Q Consensus       189 ~~~~  192 (200)
                      +.+.
T Consensus       384 la~~  387 (486)
T 2fr1_A          384 LAQQ  387 (486)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.78  E-value=1.7e-18  Score=147.85  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=112.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc--c------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL--R------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--~------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ++++++||||+|+||.+++++|+++|+ +|+++.|+.....  .      .....++.++.+|++|+++++++++     
T Consensus       238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~  317 (496)
T 3mje_A          238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED  317 (496)
T ss_dssp             CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            458999999999999999999999998 7788888643211  0      1124578999999999999999886     


Q ss_pred             -CCCEEEEccccC-CC----------CcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          121 -GVTAVISCVGGF-GS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       121 -~~d~vi~~ag~~-~~----------~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                       .+|+||||||.. ..          ++..+++|+.+++++.+++.+.+.++||++||...-........|+++|++.+.
T Consensus       318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~g~~~YaAaKa~lda  397 (496)
T 3mje_A          318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSGGQPGYAAANAYLDA  397 (496)
T ss_dssp             SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCCCcHHHHHHHHHHHH
Confidence             379999999975 21          245789999999999999998888999999995433344556789999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       398 la~~~  402 (496)
T 3mje_A          398 LAEHR  402 (496)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.77  E-value=9.9e-20  Score=142.16  Aligned_cols=135  Identities=13%  Similarity=0.069  Sum_probs=96.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEe-e--cCCCCccc--ccCCCCeeEEEccCCCHHHH-HHHh---cCCCEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASL-S--RSGRSSLR--DSWANNVIWHQGNLLSSDSW-KEAL---DGVTAVI  126 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~-~~~~---~~~d~vi  126 (200)
                      +|+++||||+|+||.+++++|+++|++|+++ +  |+.+....  ... .+..+.  |..+.+.+ +++.   .++|++|
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~g~iD~lv   77 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN-PGTIAL--AEQKPERLVDATLQHGEAIDTIV   77 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS-TTEEEC--CCCCGGGHHHHHGGGSSCEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh-CCCccc--CHHHHHHHHHHHHHHcCCCCEEE
Confidence            4789999999999999999999999999999 6  87543211  011 122322  43333222 2222   3689999


Q ss_pred             EccccCCC-------------CcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          127 SCVGGFGS-------------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       127 ~~ag~~~~-------------~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ||||....             ++..+++|+.+++++++++.    +.+.++||++||...-.+.+....|+.+|++++.+
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  157 (244)
T 1zmo_A           78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVAL  157 (244)
T ss_dssp             ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTCTTHHHHHHHHHHH
T ss_pred             ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCchHHHHHHHHHHHH
Confidence            99996432             24578999999999888874    45667999999954334455678999999999998


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       158 ~~~l  161 (244)
T 1zmo_A          158 VESA  161 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.77  E-value=1.5e-18  Score=149.22  Aligned_cols=126  Identities=14%  Similarity=0.048  Sum_probs=99.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC--
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~--  133 (200)
                      +|+|+||||+|+||++|+++|+++|++|++++|+....         ..+.+|+.+.  +.++++++|+|||+||...  
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~---------~~v~~d~~~~--~~~~l~~~D~Vih~A~~~~~~  215 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP---------GKRFWDPLNP--ASDLLDGADVLVHLAGEPIFG  215 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT---------TCEECCTTSC--CTTTTTTCSEEEECCCC----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc---------cceeecccch--hHHhcCCCCEEEECCCCcccc
Confidence            68999999999999999999999999999999986542         1256787653  4567789999999999642  


Q ss_pred             -----CCcccchhhHHHHHHHHHH-HHHcCCCEEEEEec-cccC-cC---------CcCCcchhhhHHhhHHHHHh
Q 029008          134 -----SNSYMYKINGTANINAIRA-ASEKGVKRFVYISA-ADFG-VA---------NYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~-a~~~~~~~~v~vSS-~~~~-~~---------~~~~~~Y~~sK~~~E~~~~~  192 (200)
                           .+...+++|+.++.+++++ +++.++++||++|| ..|| ..         ..+.+.|+.+|...|+++..
T Consensus       216 ~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~~~~~y~~~~~~~E~~~~~  291 (516)
T 3oh8_A          216 RFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESESGDDFLAEVCRDWEHATAP  291 (516)
T ss_dssp             -CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCCCSSHHHHHHHHHHHTTHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCCCcChHHHHHHHHHHHHHH
Confidence                 2345678999999999999 56678899999999 4576 21         12456789999988877653

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.77  E-value=1.4e-18  Score=140.86  Aligned_cols=139  Identities=16%  Similarity=0.128  Sum_probs=102.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC---------CCcc---cccCCCCeeEEEccCCCHHHHHHHhc-
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG---------RSSL---RDSWANNVIWHQGNLLSSDSWKEALD-  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~---~~~~~~~~~~~~~Dl~d~~~~~~~~~-  120 (200)
                      ..+|+++||||+|+||.+++++|+++|++|+++++..         +...   ........ ...+|+.|.++++++++ 
T Consensus         7 l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~~   85 (319)
T 1gz6_A            7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVKT   85 (319)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHHH
Confidence            4678999999999999999999999999999976632         1100   00000111 23579999887766543 


Q ss_pred             ------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchh
Q 029008          121 ------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYY  180 (200)
Q Consensus       121 ------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~  180 (200)
                            ++|+||||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.++...|+
T Consensus        86 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~~~~~Y~  165 (319)
T 1gz6_A           86 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYS  165 (319)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCCHHHH
Confidence                  6899999999643          23457899999999888887    445667999999953222344567899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      +||++.+.+.+..
T Consensus       166 aSK~a~~~~~~~l  178 (319)
T 1gz6_A          166 AAKLGLLGLANTL  178 (319)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.75  E-value=7.5e-18  Score=144.97  Aligned_cols=139  Identities=16%  Similarity=0.089  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCc-EEEe-ecCCCC------------ccc------ccCCCCeeEEEccCCCHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASL-SRSGRS------------SLR------DSWANNVIWHQGNLLSSD  113 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~-~r~~~~------------~~~------~~~~~~~~~~~~Dl~d~~  113 (200)
                      ..+++++||||+|+||.+++++|+++|++ |+++ +|+...            ..+      .....++.++.+|++|++
T Consensus       249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~  328 (525)
T 3qp9_A          249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE  328 (525)
T ss_dssp             CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence            35789999999999999999999999998 5555 676422            110      111357899999999999


Q ss_pred             HHHHHhcC------CCEEEEccccCCC----------CcccchhhHHHHHHHHHHHHHcC-----CCEEEEEeccccCcC
Q 029008          114 SWKEALDG------VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKG-----VKRFVYISAADFGVA  172 (200)
Q Consensus       114 ~~~~~~~~------~d~vi~~ag~~~~----------~~~~~~~n~~~~~~~~~~a~~~~-----~~~~v~vSS~~~~~~  172 (200)
                      +++++++.      +|+||||||...+          ++..+++|+.|++++.+++....     .++||++||...-.+
T Consensus       329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g  408 (525)
T 3qp9_A          329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG  408 (525)
T ss_dssp             HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence            99998864      6999999996431          24578999999999999997765     789999999654444


Q ss_pred             CcCCcchhhhHHhhHHHHHh
Q 029008          173 NYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ......|+++|++.+.+.+.
T Consensus       409 ~~g~~~YaaaKa~l~~lA~~  428 (525)
T 3qp9_A          409 GAGQGAYAAGTAFLDALAGQ  428 (525)
T ss_dssp             CTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            56678899999999998765

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.72  E-value=3.9e-18  Score=149.30  Aligned_cols=141  Identities=12%  Similarity=0.052  Sum_probs=101.7

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC---------CCCccc---ccCCCCeeEEEccCCCHHHHHHHh
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS---------GRSSLR---DSWANNVIWHQGNLLSSDSWKEAL  119 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~---------~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~  119 (200)
                      ....+|+++||||+|+||++++++|+++|++|++++|.         .+....   ........ ..+|+.|.+++++++
T Consensus        15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~~~~   93 (613)
T 3oml_A           15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGAKVI   93 (613)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHHH
Confidence            34578999999999999999999999999999999882         211100   00011112 347999998888877


Q ss_pred             c-------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcc
Q 029008          120 D-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQG  178 (200)
Q Consensus       120 ~-------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~  178 (200)
                      +       ++|++|||||...          .++..+++|+.+++++.+++    ++.+.++||++||...-.+.+....
T Consensus        94 ~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~~~~~  173 (613)
T 3oml_A           94 ETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVN  173 (613)
T ss_dssp             C----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCTTCHH
T ss_pred             HHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCChH
Confidence            6       4799999999642          23567899999999998887    4556679999999543334456778


Q ss_pred             hhhhHHhhHHHHHhh
Q 029008          179 YYEGKDSNLSPLLAC  193 (200)
Q Consensus       179 Y~~sK~~~E~~~~~~  193 (200)
                      |++||++++.+.+..
T Consensus       174 Y~asKaal~~lt~~l  188 (613)
T 3oml_A          174 YTAAKMGLIGLANTV  188 (613)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988863

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=128.09  Aligned_cols=119  Identities=15%  Similarity=0.122  Sum_probs=85.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC--C-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF--G-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~--~-  133 (200)
                      |||||||||||||++|+++|+++||+|++++|++...       .   +..|    +...+.++++|+|||+||..  . 
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~-------~---~~~~----~~~~~~l~~~d~vihla~~~i~~~   66 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG-------R---ITWD----ELAASGLPSCDAAVNLAGENILNP   66 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT-------E---EEHH----HHHHHCCCSCSEEEECCCCCSSCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC-------e---eecc----hhhHhhccCCCEEEEeccCcccch
Confidence            6899999999999999999999999999999975431       1   2222    23345678999999999842  1 


Q ss_pred             --CC-----cccchhhHHHHHHHHHHHHHcCCC--EEEEEec-cccCcCC----------cCCcchhhhHHhhHHH
Q 029008          134 --SN-----SYMYKINGTANINAIRAASEKGVK--RFVYISA-ADFGVAN----------YLLQGYYEGKDSNLSP  189 (200)
Q Consensus       134 --~~-----~~~~~~n~~~~~~~~~~a~~~~~~--~~v~vSS-~~~~~~~----------~~~~~Y~~sK~~~E~~  189 (200)
                        .|     ...++.|+.++.++++++++.+.+  .||++|| ..|+...          .+...|+..|...|..
T Consensus        67 ~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~~~~~~~~~~~e~~  142 (298)
T 4b4o_A           67 LRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAA  142 (298)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCSSHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCccccchhHHHHHHHHHH
Confidence              11     245688999999999999887654  5788787 4565432          2234566666666654

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.69  E-value=1.3e-16  Score=129.86  Aligned_cols=137  Identities=7%  Similarity=-0.068  Sum_probs=101.4

Q ss_pred             CCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCC---------CC---ccc--cc---CCCCeeEEEccCCCH--H-
Q 029008           56 SEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSG---------RS---SLR--DS---WANNVIWHQGNLLSS--D-  113 (200)
Q Consensus        56 ~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~---------~~---~~~--~~---~~~~~~~~~~Dl~d~--~-  113 (200)
                      +|+++||||++  +||.+++++|+++|++|++.+|++         ++   ...  ..   ....+.++.+|+++.  + 
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~   81 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence            57999999875  999999999999999999766543         11   000  11   123468888999877  6 


Q ss_pred             -----------------HHHHHhc-------CCCEEEEccccCC------------CCcccchhhHHHHHHHHHHHHHcC
Q 029008          114 -----------------SWKEALD-------GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASEKG  157 (200)
Q Consensus       114 -----------------~~~~~~~-------~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~~~  157 (200)
                                       +++++++       ++|++|||||...            .++..+++|+.+++.+.+++...-
T Consensus        82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m  161 (329)
T 3lt0_A           82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM  161 (329)
T ss_dssp             CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred             hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                             6666554       5899999998521            235678999999999999986542


Q ss_pred             C--CEEEEEeccccCcCCcCCc-chhhhHHhhHHHHHh
Q 029008          158 V--KRFVYISAADFGVANYLLQ-GYYEGKDSNLSPLLA  192 (200)
Q Consensus       158 ~--~~~v~vSS~~~~~~~~~~~-~Y~~sK~~~E~~~~~  192 (200)
                      .  ++||++||...-.+.+... .|++||++++.+.+.
T Consensus       162 ~~~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~  199 (329)
T 3lt0_A          162 KPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTRV  199 (329)
T ss_dssp             EEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHH
T ss_pred             hhCCeEEEEeCccccCCCCcchHHHHHHHHHHHHHHHH
Confidence            2  5899999964334444554 899999999998875

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.68  E-value=3.2e-16  Score=129.39  Aligned_cols=140  Identities=14%  Similarity=0.023  Sum_probs=103.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHH-CCCcEEEeecCCCCccc-----------------ccCCCCeeEEEccCCCHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLR-----------------DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~-----------------~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      ..+|+++||||+++||.++++.|++ +|++|++++|+.+....                 ......+..+.+|++|++++
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v  124 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK  124 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            4689999999999999999999999 99999999887654211                 11234678899999999988


Q ss_pred             HHHhc-------CCCEEEEccccC---------------C-----------------------------CCcccchhhHH
Q 029008          116 KEALD-------GVTAVISCVGGF---------------G-----------------------------SNSYMYKINGT  144 (200)
Q Consensus       116 ~~~~~-------~~d~vi~~ag~~---------------~-----------------------------~~~~~~~~n~~  144 (200)
                      +++++       ++|++|||||..               .                             .|+..+++|..
T Consensus       125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~  204 (405)
T 3zu3_A          125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG  204 (405)
T ss_dssp             HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence            87765       589999999863               0                             12334567777


Q ss_pred             HHH-HHHHHHHHcC----CCEEEEEeccccCcCCcCC--cchhhhHHhhHHHHHhh
Q 029008          145 ANI-NAIRAASEKG----VKRFVYISAADFGVANYLL--QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       145 ~~~-~~~~~a~~~~----~~~~v~vSS~~~~~~~~~~--~~Y~~sK~~~E~~~~~~  193 (200)
                      +.+ .+++++...+    ..++|++||...-.+.+..  ..|+++|++++.+.+..
T Consensus       205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~~~~~aY~AaKaal~~ltrsL  260 (405)
T 3zu3_A          205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLAI  260 (405)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCCccchHHHHHHHHHHHHHHHH
Confidence            666 5566554322    2589999996433333333  78999999999998863

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.68  E-value=3.9e-16  Score=125.00  Aligned_cols=140  Identities=6%  Similarity=-0.112  Sum_probs=96.4

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCC-----------CCc--ccccCCCC----eeEEEcc------
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSG-----------RSS--LRDSWANN----VIWHQGN------  108 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~--~~~~~~~~----~~~~~~D------  108 (200)
                      ..+|+++||||+  |+||.+++++|+++|++|++++|+.           +..  ........    ...+.+|      
T Consensus         6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
T 1d7o_A            6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNP   85 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSG
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccch
Confidence            457899999999  9999999999999999999987531           111  11110011    2334443      


Q ss_pred             --CC----C--------HHHHHHHhc-------CCCEEEEccccCC------------CCcccchhhHHHHHHHHHHHHH
Q 029008          109 --LL----S--------SDSWKEALD-------GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASE  155 (200)
Q Consensus       109 --l~----d--------~~~~~~~~~-------~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~  155 (200)
                        +.    |        +++++++++       ++|++|||||...            .++..+++|+.+++++++++.+
T Consensus        86 ~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  165 (297)
T 1d7o_A           86 EDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLP  165 (297)
T ss_dssp             GGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred             hhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence              22    2        344554443       6899999998521            2345789999999999999976


Q ss_pred             cC--CCEEEEEeccccCcCCcCC-cchhhhHHhhHHHHHhh
Q 029008          156 KG--VKRFVYISAADFGVANYLL-QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       156 ~~--~~~~v~vSS~~~~~~~~~~-~~Y~~sK~~~E~~~~~~  193 (200)
                      .-  .++||++||...-.+.+.. ..|+.+|++++.+.+..
T Consensus       166 ~m~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~l  206 (297)
T 1d7o_A          166 IMNPGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVL  206 (297)
T ss_dssp             GEEEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHH
T ss_pred             HhccCceEEEEeccccccCCCCcchHHHHHHHHHHHHHHHH
Confidence            41  2589999995332333344 58999999999988763

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.68  E-value=1.6e-16  Score=128.36  Aligned_cols=140  Identities=11%  Similarity=-0.111  Sum_probs=96.7

Q ss_pred             CCCCeEEEEcc--CchhHHHHHHHHHHCCCcEEEeecCC-----------CCc--ccccCCC----CeeEEEccC-----
Q 029008           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSG-----------RSS--LRDSWAN----NVIWHQGNL-----  109 (200)
Q Consensus        54 ~~~~~ilVtGa--~G~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~--~~~~~~~----~~~~~~~Dl-----  109 (200)
                      ..+|+++||||  +|+||.+++++|+++|++|++++|+.           ...  .......    .+.++.+|+     
T Consensus         7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (315)
T 2o2s_A            7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKP   86 (315)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSST
T ss_pred             CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccccc
Confidence            45789999999  89999999999999999999998642           110  0011001    124444443     


Q ss_pred             -------CC--------HHHHHHHhc-------CCCEEEEccccCC------------CCcccchhhHHHHHHHHHHHHH
Q 029008          110 -------LS--------SDSWKEALD-------GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASE  155 (200)
Q Consensus       110 -------~d--------~~~~~~~~~-------~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~  155 (200)
                             +|        +++++++++       ++|++|||||...            .++..+++|+.+++++.+++..
T Consensus        87 ~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~  166 (315)
T 2o2s_A           87 EDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGP  166 (315)
T ss_dssp             TSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHST
T ss_pred             chhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                   32        445555443       6899999998531            1345689999999999999865


Q ss_pred             cC--CCEEEEEeccccCcCCcCC-cchhhhHHhhHHHHHhh
Q 029008          156 KG--VKRFVYISAADFGVANYLL-QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       156 ~~--~~~~v~vSS~~~~~~~~~~-~~Y~~sK~~~E~~~~~~  193 (200)
                      .-  .++||++||...-.+.+.. ..|+.+|++++.+.+..
T Consensus       167 ~m~~~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~l  207 (315)
T 2o2s_A          167 IMNEGGSAVTLSYLAAERVVPGYGGGMSSAKAALESDTRTL  207 (315)
T ss_dssp             TEEEEEEEEEEEEGGGTSCCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEecccccccCCCccHHHHHHHHHHHHHHHHH
Confidence            41  2589999995322233333 48999999999988763

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.67  E-value=1.1e-16  Score=139.77  Aligned_cols=141  Identities=14%  Similarity=0.112  Sum_probs=103.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-cc--cCCCCeeEEEccC-CCHHHH-HH---HhcCCCE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-RD--SWANNVIWHQGNL-LSSDSW-KE---ALDGVTA  124 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~~~~~~~~~Dl-~d~~~~-~~---~~~~~d~  124 (200)
                      ..++|+++||||+++||.++++.|+++|++|++.+++..... +.  ....++..+.+|+ .+.+.+ ++   .+.++|+
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDi  398 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDI  398 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCE
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCE
Confidence            346789999999999999999999999999999886432211 11  1123566777888 554332 22   2346999


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .|+..+++|+.+++.+.+++.    +.+.++||++||...-.+.+....|++||+++..+.
T Consensus       399 LVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~asKaal~~lt  478 (604)
T 2et6_A          399 LVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLS  478 (604)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCChhHHHHHHHHHHHH
Confidence            999999642          245678999999998888764    445569999999543334455678999999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       479 ~~l  481 (604)
T 2et6_A          479 KTM  481 (604)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.65  E-value=2.1e-16  Score=127.88  Aligned_cols=140  Identities=9%  Similarity=-0.098  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcc--CchhHHHHHHHHHHCCCcEEEeecCC-----------CCccc--------------ccCC-----CC
Q 029008           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSG-----------RSSLR--------------DSWA-----NN  101 (200)
Q Consensus        54 ~~~~~ilVtGa--~G~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~--------------~~~~-----~~  101 (200)
                      ..+|+++||||  +++||.+++++|+++|++|++++|++           +...+              ....     ..
T Consensus         7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (319)
T 2ptg_A            7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF   86 (319)
T ss_dssp             CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence            45789999999  89999999999999999999998641           11000              0000     01


Q ss_pred             eeEEEccC------------CC--------HHHHHHHhc-------CCCEEEEccccCC------------CCcccchhh
Q 029008          102 VIWHQGNL------------LS--------SDSWKEALD-------GVTAVISCVGGFG------------SNSYMYKIN  142 (200)
Q Consensus       102 ~~~~~~Dl------------~d--------~~~~~~~~~-------~~d~vi~~ag~~~------------~~~~~~~~n  142 (200)
                      ..++.+|+            +|        +++++++++       ++|++|||||...            .++..+++|
T Consensus        87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN  166 (319)
T 2ptg_A           87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS  166 (319)
T ss_dssp             SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence            24454443            22        234554443       6899999998531            134578999


Q ss_pred             HHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCC-cchhhhHHhhHHHHHhh
Q 029008          143 GTANINAIRAASEKG--VKRFVYISAADFGVANYLL-QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       143 ~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~-~~Y~~sK~~~E~~~~~~  193 (200)
                      +.+++++++++...-  .++||++||...-.+.+.. ..|+.+|++++.+.+..
T Consensus       167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~l  220 (319)
T 2ptg_A          167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKVIPGYGGGMSSAKAALESDCRTL  220 (319)
T ss_dssp             THHHHHHHHHHGGGEEEEEEEEEEEECC------------------THHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCceEEEEeccccccccCccchhhHHHHHHHHHHHHHH
Confidence            999999999987641  2589999995422233334 58999999999988763

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.65  E-value=1.2e-16  Score=139.57  Aligned_cols=139  Identities=14%  Similarity=0.093  Sum_probs=98.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC--------Cccc----ccCCCCeeEEEccCCCHHHHHHH---
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR--------SSLR----DSWANNVIWHQGNLLSSDSWKEA---  118 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~----~~~~~~~~~~~~Dl~d~~~~~~~---  118 (200)
                      ..+|+++||||+++||+++++.|+++|++|++.+|+..        ...+    .....+... .+|+.|.++++++   
T Consensus         6 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~-~~d~~d~~~~~~~v~~   84 (604)
T 2et6_A            6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA-VADYNNVLDGDKIVET   84 (604)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEE-EEECCCTTCHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeE-EEEcCCHHHHHHHHHH
Confidence            46789999999999999999999999999999887641        1111    000011122 2477766544433   


Q ss_pred             ----hcCCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchh
Q 029008          119 ----LDGVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYY  180 (200)
Q Consensus       119 ----~~~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~  180 (200)
                          +.++|++|||||...          .|+..+++|+.|++.+.+++.    +++.++||++||...-.+.+....|+
T Consensus        85 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~  164 (604)
T 2et6_A           85 AVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYA  164 (604)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCchHHH
Confidence                336999999999632          245688999999998887763    44557999999954333445567899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      +||++++.+.+..
T Consensus       165 asKaal~~lt~~l  177 (604)
T 2et6_A          165 SAKSALLGFAETL  177 (604)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988863

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.64  E-value=5.2e-16  Score=129.09  Aligned_cols=140  Identities=14%  Similarity=-0.005  Sum_probs=100.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHH-CCCcEEEeecCCCCccc-----------------ccCCCCeeEEEccCCCHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLR-----------------DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~-----------------~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      ..+|++|||||+++||.++++.|++ +|++|++++|+.+....                 ......+..+.+|++|++++
T Consensus        59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence            3578999999999999999999999 99999999987654221                 11234688899999999887


Q ss_pred             HHHh--------cCCCEEEEccccC---------------CC-----------------------------CcccchhhH
Q 029008          116 KEAL--------DGVTAVISCVGGF---------------GS-----------------------------NSYMYKING  143 (200)
Q Consensus       116 ~~~~--------~~~d~vi~~ag~~---------------~~-----------------------------~~~~~~~n~  143 (200)
                      ++++        .++|++|||||..               .+                             |+..+++|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~  218 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG  218 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence            7654        3589999999851               00                             122345555


Q ss_pred             HHHH-HHHHHHHHcC----CCEEEEEeccccCcCCcC--CcchhhhHHhhHHHHHhh
Q 029008          144 TANI-NAIRAASEKG----VKRFVYISAADFGVANYL--LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       144 ~~~~-~~~~~a~~~~----~~~~v~vSS~~~~~~~~~--~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+.+ .+++++...+    ..+||++||...-.+.+.  ...|++||++++.+.+..
T Consensus       219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~~~~~aY~ASKaAl~~lTrsL  275 (422)
T 3s8m_A          219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRL  275 (422)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCCccchHHHHHHHHHHHHHHHH
Confidence            5554 5566654432    248999999643222222  378999999999988863

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.62  E-value=2.1e-16  Score=128.52  Aligned_cols=136  Identities=11%  Similarity=0.023  Sum_probs=100.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCCc-cc----ccCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSS-LR----DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~-~~----~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      +++|+||||+||||++++..|+++|+       +|+++++..... ..    ......+.++ .|+.+.+++.++++++|
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~~~D   82 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFKDAD   82 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhCCCC
Confidence            46899999999999999999999996       899988763110 00    0111122333 57777777888899999


Q ss_pred             EEEEccccCC----CCcccchhhHHHHHHHHHHHHHcC-CC-EEEEEeccc----c---Cc--CCcCCcchhhhHHhhHH
Q 029008          124 AVISCVGGFG----SNSYMYKINGTANINAIRAASEKG-VK-RFVYISAAD----F---GV--ANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       124 ~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~-~~-~~v~vSS~~----~---~~--~~~~~~~Y~~sK~~~E~  188 (200)
                      +|||+||...    .....+++|+.++.++++++++.+ .+ +++++|+..    +   ..  ..++...|+.+|...|+
T Consensus        83 ~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~~er  162 (327)
T 1y7t_A           83 YALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNR  162 (327)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHH
T ss_pred             EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHHHHH
Confidence            9999999653    234578999999999999999986 65 788888742    1   01  23455689999999998


Q ss_pred             HHHh
Q 029008          189 PLLA  192 (200)
Q Consensus       189 ~~~~  192 (200)
                      +...
T Consensus       163 ~~~~  166 (327)
T 1y7t_A          163 AKAQ  166 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.62  E-value=4.1e-15  Score=124.25  Aligned_cols=140  Identities=8%  Similarity=-0.063  Sum_probs=100.7

Q ss_pred             CCCCeEEEEccCchhHHH--HHHHHHHCCCcEEEeecCCCCcc-----------c------ccCCCCeeEEEccCCCHHH
Q 029008           54 PPSEKLLVLGGNGFVGSH--ICREALDRGLTVASLSRSGRSSL-----------R------DSWANNVIWHQGNLLSSDS  114 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~--l~~~L~~~g~~V~~~~r~~~~~~-----------~------~~~~~~~~~~~~Dl~d~~~  114 (200)
                      ..+|+++||||+++||.+  +++.|+++|++|++++|+.....           +      ......+.++.+|++|+++
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~  137 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET  137 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence            578999999999999999  99999999999999998754421           0      1123468899999999998


Q ss_pred             HHHHhc-------CCCEEEEccccC---------------CC-----------------------------CcccchhhH
Q 029008          115 WKEALD-------GVTAVISCVGGF---------------GS-----------------------------NSYMYKING  143 (200)
Q Consensus       115 ~~~~~~-------~~d~vi~~ag~~---------------~~-----------------------------~~~~~~~n~  143 (200)
                      ++++++       ++|++|||||..               .+                             ++..+++|.
T Consensus       138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~  217 (418)
T 4eue_A          138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG  217 (418)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence            887764       589999999863               00                             112334454


Q ss_pred             HHHH-HHHHHHHHcC----CCEEEEEeccccCcCCcCC--cchhhhHHhhHHHHHhh
Q 029008          144 TANI-NAIRAASEKG----VKRFVYISAADFGVANYLL--QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       144 ~~~~-~~~~~a~~~~----~~~~v~vSS~~~~~~~~~~--~~Y~~sK~~~E~~~~~~  193 (200)
                      .+.+ .+++++...+    ..++|++||.....+.+..  ..|+++|++++.+.+..
T Consensus       218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~~~~~aY~ASKaAL~~ltrsL  274 (418)
T 4eue_A          218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKIYREGTIGIAKKDLEDKAKLI  274 (418)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCccccHHHHHHHHHHHHHHHHH
Confidence            4444 4455554432    2479999996433333444  78999999999988863

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.7e-15  Score=140.26  Aligned_cols=137  Identities=13%  Similarity=0.048  Sum_probs=103.0

Q ss_pred             CCCCeEEEEccCch-hHHHHHHHHHHCCCcEEEee-cCCCCccc---cc------CCCCeeEEEccCCCHHHHHHHhc--
Q 029008           54 PPSEKLLVLGGNGF-VGSHICREALDRGLTVASLS-RSGRSSLR---DS------WANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~---~~------~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      ..+|+++||||+|+ ||.++++.|+++|++|++++ |+.+...+   ..      ...++.++.+|++|.++++++++  
T Consensus       474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I  553 (1688)
T 2pff_A          474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI  553 (1688)
T ss_dssp             CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            45789999999998 99999999999999999984 54433211   11      12368899999999998887653  


Q ss_pred             -----------CCCEEEEccccCCC-------------CcccchhhHHHHHHHHHHHHH--c----CCCEEEEEeccccC
Q 029008          121 -----------GVTAVISCVGGFGS-------------NSYMYKINGTANINAIRAASE--K----GVKRFVYISAADFG  170 (200)
Q Consensus       121 -----------~~d~vi~~ag~~~~-------------~~~~~~~n~~~~~~~~~~a~~--~----~~~~~v~vSS~~~~  170 (200)
                                 ++|+||||||....             ++..+++|+.+++.++++++.  .    +.++||++||...-
T Consensus       554 ~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~  633 (1688)
T 2pff_A          554 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT  633 (1688)
T ss_dssp             HSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTT
T ss_pred             HHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhc
Confidence                       48999999995421             245689999999999888732  2    22589999995322


Q ss_pred             cCCcCCcchhhhHHhhHHHHHh
Q 029008          171 VANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       171 ~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      .+  ....|++||++++.++..
T Consensus       634 ~G--g~saYaASKAAL~aLttr  653 (1688)
T 2pff_A          634 FG--GDGMYSESKLSLETLFNR  653 (1688)
T ss_dssp             SS--CBTTHHHHHHHHTHHHHH
T ss_pred             cC--CchHHHHHHHHHHHHHHH
Confidence            22  457899999999998443

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.60  E-value=7.4e-15  Score=139.29  Aligned_cols=134  Identities=13%  Similarity=0.062  Sum_probs=102.2

Q ss_pred             CCCCeEEEEccCch-hHHHHHHHHHHCCCcEEEee-cCCCCccc-------c--cCCCCeeEEEccCCCHHHHHHHhc--
Q 029008           54 PPSEKLLVLGGNGF-VGSHICREALDRGLTVASLS-RSGRSSLR-------D--SWANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~-------~--~~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      ..+|+++||||+++ ||.++++.|+++|++|++++ |+.+...+       .  ....++.++.+|++|.++++++++  
T Consensus       673 l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i  752 (1887)
T 2uv8_A          673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI  752 (1887)
T ss_dssp             CTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHH
Confidence            45789999999998 99999999999999999985 54332110       0  113468899999999999887653  


Q ss_pred             -----------CCCEEEEccccCCC-------------CcccchhhHHHHHHHHHHHHHc------CCCEEEEEeccccC
Q 029008          121 -----------GVTAVISCVGGFGS-------------NSYMYKINGTANINAIRAASEK------GVKRFVYISAADFG  170 (200)
Q Consensus       121 -----------~~d~vi~~ag~~~~-------------~~~~~~~n~~~~~~~~~~a~~~------~~~~~v~vSS~~~~  170 (200)
                                 .+|+||||||....             ++..+++|+.+++.++++++..      +.++||++||...-
T Consensus       753 ~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~  832 (1887)
T 2uv8_A          753 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT  832 (1887)
T ss_dssp             HSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTC
T ss_pred             HHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhc
Confidence                       58999999996421             2456899999999999887432      12589999995322


Q ss_pred             cCCcCCcchhhhHHhhHHH
Q 029008          171 VANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       171 ~~~~~~~~Y~~sK~~~E~~  189 (200)
                      .+  ....|++||++++.+
T Consensus       833 ~g--g~~aYaASKAAL~~L  849 (1887)
T 2uv8_A          833 FG--GDGMYSESKLSLETL  849 (1887)
T ss_dssp             SS--CBTTHHHHHHHGGGH
T ss_pred             cC--CCchHHHHHHHHHHH
Confidence            22  457899999999998

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.60  E-value=1.8e-15  Score=135.92  Aligned_cols=138  Identities=17%  Similarity=0.237  Sum_probs=108.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHH-HCCCc-EEEeecCCCCcc---c-----ccCCCCeeEEEccCCCHHHHHHHhcC--
Q 029008           54 PPSEKLLVLGGNGFVGSHICREAL-DRGLT-VASLSRSGRSSL---R-----DSWANNVIWHQGNLLSSDSWKEALDG--  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~-~~g~~-V~~~~r~~~~~~---~-----~~~~~~~~~~~~Dl~d~~~~~~~~~~--  121 (200)
                      ..+++++||||+|+||.+++++|+ ++|++ |++++|+.....   +     .....++.++.+|++|+++++++++.  
T Consensus       528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~  607 (795)
T 3slk_A          528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIP  607 (795)
T ss_dssp             CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            457899999999999999999999 79984 888888743211   1     11245789999999999999998863  


Q ss_pred             ----CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          122 ----VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       122 ----~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                          +|+||||||...          .++..+++|+.|++++.+++... . +||++||...-...+....|+++|...+
T Consensus       608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~-l-~iV~~SS~ag~~g~~g~~~YaAaka~~~  685 (795)
T 3slk_A          608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD-V-ALVLFSSVSGVLGSGGQGNYAAANSFLD  685 (795)
T ss_dssp             TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT-S-EEEEEEETHHHHTCSSCHHHHHHHHHHH
T ss_pred             HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC-C-EEEEEccHHhcCCCCCCHHHHHHHHHHH
Confidence                699999999653          24567899999999999988433 3 8999999654445566789999999888


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       686 alA~~~  691 (795)
T 3slk_A          686 ALAQQR  691 (795)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887753

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.59  E-value=3.9e-15  Score=140.96  Aligned_cols=137  Identities=12%  Similarity=0.026  Sum_probs=102.8

Q ss_pred             CCCCeEEEEccCch-hHHHHHHHHHHCCCcEEEeecCCCCcc--------ccc--CCCCeeEEEccCCCHHHHHHHhc--
Q 029008           54 PPSEKLLVLGGNGF-VGSHICREALDRGLTVASLSRSGRSSL--------RDS--WANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~-iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~~~--~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      ..+++++||||+|+ ||.++++.|+++|++|++++++.....        ...  ...++.++.+|++|.++++++++  
T Consensus       650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i  729 (1878)
T 2uv9_A          650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYI  729 (1878)
T ss_dssp             CTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            46789999999999 999999999999999999864432211        011  13468899999999999987763  


Q ss_pred             ---------CCCEEEEccccCCC-------------CcccchhhHHHHHHHHHHHH--Hc----CCCEEEEEeccccCcC
Q 029008          121 ---------GVTAVISCVGGFGS-------------NSYMYKINGTANINAIRAAS--EK----GVKRFVYISAADFGVA  172 (200)
Q Consensus       121 ---------~~d~vi~~ag~~~~-------------~~~~~~~n~~~~~~~~~~a~--~~----~~~~~v~vSS~~~~~~  172 (200)
                               .+|+||||||....             ++..+++|+.+++.++++++  ..    +.++||++||...-.+
T Consensus       730 ~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g  809 (1878)
T 2uv9_A          730 YDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG  809 (1878)
T ss_dssp             HCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS
T ss_pred             HHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC
Confidence                     58999999996421             24567999999998887632  21    2358999999532222


Q ss_pred             CcCCcchhhhHHhhHHHHHh
Q 029008          173 NYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~  192 (200)
                        ....|+++|++++.+++.
T Consensus       810 --g~~aYaASKAAL~aLt~~  827 (1878)
T 2uv9_A          810 --NDGLYSESKLALETLFNR  827 (1878)
T ss_dssp             --CCSSHHHHHHHHTTHHHH
T ss_pred             --CchHHHHHHHHHHHHHHH
Confidence              367899999999998764

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.56  E-value=1.9e-14  Score=141.44  Aligned_cols=137  Identities=20%  Similarity=0.135  Sum_probs=106.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCc-EEEeecCCCCcc---c-----ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSL---R-----DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~---~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      .+++++||||+|+||.++++.|+++|++ |++++|+..+..   +     .....++.++.+|++|.++++++++     
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence            5789999999999999999999999997 777788755421   0     1123468889999999999887764     


Q ss_pred             -CCCEEEEccccC----------CCCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          121 -GVTAVISCVGGF----------GSNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       121 -~~d~vi~~ag~~----------~~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                       .+|+||||||..          +.++..+++|+.|++++.+++...  ..++||++||.....+.+....|+++|++++
T Consensus      1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g~~~Y~aaKaal~ 2042 (2512)
T 2vz8_A         1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQANYGFANSAME 2042 (2512)
T ss_dssp             SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCCcHHHHHHHHHHH
Confidence             589999999953          245778999999999998877654  2469999999543344456778999999999


Q ss_pred             HHHH
Q 029008          188 SPLL  191 (200)
Q Consensus       188 ~~~~  191 (200)
                      .+.+
T Consensus      2043 ~l~~ 2046 (2512)
T 2vz8_A         2043 RICE 2046 (2512)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9998

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.44  E-value=2.2e-13  Score=93.79  Aligned_cols=96  Identities=21%  Similarity=0.135  Sum_probs=77.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ++++|+|+|+ |++|..+++.|.++| ++|++++|+.++... ....++.++.+|+.+.+.+.++++++|+||++++.. 
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~-   80 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAV-LNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF-   80 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHH-HHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG-
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHH-HHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch-
Confidence            5679999999 999999999999999 899999997654221 113577889999999999999999999999998642 


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEE
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYI  164 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~v  164 (200)
                                 ....+++++.+.|+++|.+.
T Consensus        81 -----------~~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           81 -----------LTPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             -----------GHHHHHHHHHHTTCEEECCC
T ss_pred             -----------hhHHHHHHHHHhCCCEEEec
Confidence                       13567888888888655433

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.36  E-value=1.1e-11  Score=122.74  Aligned_cols=139  Identities=14%  Similarity=0.063  Sum_probs=99.1

Q ss_pred             CCCCeEEEEccCch-hHHHHHHHHHHCCCcEEEeecCCCCc-----cc---c--cCCCCeeEEEccCCCHHHHHHHhc--
Q 029008           54 PPSEKLLVLGGNGF-VGSHICREALDRGLTVASLSRSGRSS-----LR---D--SWANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~-iG~~l~~~L~~~g~~V~~~~r~~~~~-----~~---~--~~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      ..+|+++||||+++ ||.++++.|+++|++|++++|+.+..     .+   .  ....++.++.+|++|+++++++++  
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence            57899999999999 99999999999999999999986541     10   1  113457889999999999887642  


Q ss_pred             ---------CCCEEEEccccC---------------CCCccc----chhhHHHHHHHHHHHHH----cCCC---EEEEEe
Q 029008          121 ---------GVTAVISCVGGF---------------GSNSYM----YKINGTANINAIRAASE----KGVK---RFVYIS  165 (200)
Q Consensus       121 ---------~~d~vi~~ag~~---------------~~~~~~----~~~n~~~~~~~~~~a~~----~~~~---~~v~vS  165 (200)
                               ++|++|||||..               ..++..    +++|+.+++.+++++..    .+..   .+|...
T Consensus      2214 ~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ 2293 (3089)
T 3zen_D         2214 GTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPG 2293 (3089)
T ss_dssp             TSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred             HhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEC
Confidence                     479999999961               123333    68888888887777643    3321   233333


Q ss_pred             ccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          166 AADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       166 S~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...+. ......|++||++++.+.+.+
T Consensus      2294 ss~~g~-~g~~~aYsASKaAl~~Ltrsl 2320 (3089)
T 3zen_D         2294 SPNRGM-FGGDGAYGEAKSALDALENRW 2320 (3089)
T ss_dssp             CSSTTS-CSSCSSHHHHGGGHHHHHHHH
T ss_pred             Cccccc-CCCchHHHHHHHHHHHHHHHH
Confidence            322221 123458999999999988864

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=99.13  E-value=1.7e-10  Score=93.57  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=80.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ++++|+||||+|++|..++..|+.+|  ++|++++++++....   ........+ .+ +.+.+++.++++++|+|||++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v-~~-~~~t~d~~~al~gaDvVi~~a   84 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV-RG-FLGQQQLEAALTGMDLIIVPA   84 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEE-EE-EESHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceE-EE-EeCCCCHHHHcCCCCEEEEcC
Confidence            34699999999999999999999998  789998876541100   000111111 11 234567888999999999999


Q ss_pred             ccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          130 GGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       130 g~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |....    ....+.+|+.++.++++++.+.+.+.+|+++|
T Consensus        85 g~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S  125 (326)
T 1smk_A           85 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS  125 (326)
T ss_dssp             CCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            96432    24568899999999999999998887888876

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.08  E-value=2.4e-09  Score=87.95  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=63.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHH-HCCCcEEEeecCCCCccc-----------------ccCCCCeeEEEccCCCHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREAL-DRGLTVASLSRSGRSSLR-----------------DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~-----------------~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      ..+|++|||||++++|.+.+..|+ ..|..|+++.+..+....                 .........+.+|++|++.+
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i  127 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK  127 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence            457899999999999999999998 679999999887654211                 11235688999999999998


Q ss_pred             HHHhc-------CCCEEEEccccC
Q 029008          116 KEALD-------GVTAVISCVGGF  132 (200)
Q Consensus       116 ~~~~~-------~~d~vi~~ag~~  132 (200)
                      +++++       ++|++||++|..
T Consensus       128 ~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          128 AQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEecccc
Confidence            88775       589999999853

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.08  E-value=7e-11  Score=94.14  Aligned_cols=78  Identities=21%  Similarity=0.127  Sum_probs=64.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc---c-CCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD---S-WANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+++++||||+|++|+++++.|+++|++|++++|+.++..+.   . ...++.++.+|++|+++++++++++|+||||+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence            4678999999999999999999999999999999975432110   0 00246778899999999999999999999999


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       197 g~  198 (287)
T 1lu9_A          197 AI  198 (287)
T ss_dssp             CT
T ss_pred             Cc
Confidence            74

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=99.07  E-value=1e-09  Score=77.74  Aligned_cols=100  Identities=13%  Similarity=0.085  Sum_probs=73.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFG  133 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~~  133 (200)
                      ++++|+|+|+ |.+|..+++.|.+.|++|++++++.+... ........++.+|..+++.+.++ +.++|+||++++.. 
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~-   81 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVN-AYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN-   81 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHH-TTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC-
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc-
Confidence            4578999998 99999999999999999999998754321 11123456788999998888776 77899999998741 


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                           .+.|    ..+.+.+++.+.+++|..++
T Consensus        82 -----~~~~----~~~~~~~~~~~~~~ii~~~~  105 (144)
T 2hmt_A           82 -----IQAS----TLTTLLLKELDIPNIWVKAQ  105 (144)
T ss_dssp             -----HHHH----HHHHHHHHHTTCSEEEEECC
T ss_pred             -----hHHH----HHHHHHHHHcCCCeEEEEeC
Confidence                 1222    23566677778777776665

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.04  E-value=1.3e-10  Score=94.34  Aligned_cols=110  Identities=6%  Similarity=-0.001  Sum_probs=80.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-------cEEEeecC----CCCcc---cccCCCCeeEEEccCCCHHHHHHHhcC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRS----GRSSL---RDSWANNVIWHQGNLLSSDSWKEALDG  121 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~----~~~~~---~~~~~~~~~~~~~Dl~d~~~~~~~~~~  121 (200)
                      .++|+||||+|++|.+++..|+.+|.       +|++++++    .++..   .........+ ..|+...+++.+++++
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~~   83 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFKD   83 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhCC
Confidence            46999999999999999999999885       78888876    22110   0000110111 1355555667889999


Q ss_pred             CCEEEEccccCCC----CcccchhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 029008          122 VTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (200)
Q Consensus       122 ~d~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~-~~-~~v~vSS  166 (200)
                      +|+|||+||....    ....+..|+..+.++++++.+.+ .+ +||++|.
T Consensus        84 aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           84 ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            9999999996442    23467899999999999999985 66 8888887

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.95  E-value=1.8e-09  Score=91.26  Aligned_cols=103  Identities=18%  Similarity=0.149  Sum_probs=75.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~  134 (200)
                      +++|+|+| +|++|+++++.|++.|++|++.+|+.++..... ...++..+.+|+.|.+++.++++++|+||||++....
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~   81 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   81 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccc
Confidence            57899998 699999999999999999999999754422111 1124778899999999999999999999999986321


Q ss_pred             C----------cccchh--hHHHHHHHHHHHHHcCCC
Q 029008          135 N----------SYMYKI--NGTANINAIRAASEKGVK  159 (200)
Q Consensus       135 ~----------~~~~~~--n~~~~~~~~~~a~~~~~~  159 (200)
                      .          ...+..  .......++++|+++|+.
T Consensus        82 ~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~  118 (450)
T 1ff9_A           82 ATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT  118 (450)
T ss_dssp             HHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred             hHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence            1          111111  124567888999888873

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.93  E-value=3.9e-09  Score=74.92  Aligned_cols=99  Identities=15%  Similarity=0.131  Sum_probs=71.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFG  133 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~~  133 (200)
                      ++++++|+|+ |.+|..+++.|.++|++|++++++++.... ....++.++.+|.+|++.++++ ++++|+||.+.+.. 
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~-~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~-   81 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIEL-LEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD-   81 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHH-HHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHH-HHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH-
Confidence            4578999998 999999999999999999999997654211 1124678899999999988876 46799999987621 


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                            +.|    ..+...+++.+..++|....
T Consensus        82 ------~~n----~~~~~~a~~~~~~~iia~~~  104 (141)
T 3llv_A           82 ------EFN----LKILKALRSVSDVYAIVRVS  104 (141)
T ss_dssp             ------HHH----HHHHHHHHHHCCCCEEEEES
T ss_pred             ------HHH----HHHHHHHHHhCCceEEEEEc
Confidence                  122    33455566666545554443

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.92  E-value=2.3e-09  Score=86.46  Aligned_cols=105  Identities=16%  Similarity=0.103  Sum_probs=75.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeec--CCCCcc------cc--cCC-CCeeEEEccCCCHHHHHHHhcCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSR--SGRSSL------RD--SWA-NNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~------~~--~~~-~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      ++|+||||+|++|..++..|+.+|.  ++.++++  +.++..      ..  ... ..+.+...|    +++.++++++|
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~gaD   76 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDESD   76 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTCS
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhCCCC
Confidence            4899999999999999999999885  5777776  322110      00  011 223333221    22466789999


Q ss_pred             EEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +|||+||....+    ...++.|+.++.++++++++.+ +.+|+++|
T Consensus        77 ~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~S  122 (313)
T 1hye_A           77 VVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVIT  122 (313)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECS
T ss_pred             EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEec
Confidence            999999965422    3567999999999999999998 87888777

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.90  E-value=4.5e-10  Score=90.23  Aligned_cols=103  Identities=16%  Similarity=0.122  Sum_probs=74.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeec--CCCCccc------c--cCCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSR--SGRSSLR------D--SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~------~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ++|+||||+|++|..++..|+.+|.  ++.++++  +.++...      .  .....+.+.. +  +    .++++++|+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDv   73 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGSDV   73 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCCCE
Confidence            4899999999999999999999885  5777777  3321100      0  0112333332 1  1    346889999


Q ss_pred             EEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |||++|....+    ...+..|+.++.++++++.+.+.+.+|+++|
T Consensus        74 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S  119 (303)
T 1o6z_A           74 VVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (303)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            99999965432    3567899999999999999998888888876

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.88  E-value=8.1e-09  Score=72.72  Aligned_cols=99  Identities=13%  Similarity=0.214  Sum_probs=70.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFGS  134 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~~~  134 (200)
                      +++|+|+|+ |.+|..+++.|.+.|++|++++++++.........++.++.+|..+++.+.+. ++++|+||++.+..  
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~--   80 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE--   80 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH--
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc--
Confidence            468999997 99999999999999999999998754321111112567788999998887765 67899999986531  


Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                           ..|    ..+.+.++..+.+++|..++
T Consensus        81 -----~~~----~~~~~~~~~~~~~~ii~~~~  103 (140)
T 1lss_A           81 -----EVN----LMSSLLAKSYGINKTIARIS  103 (140)
T ss_dssp             -----HHH----HHHHHHHHHTTCCCEEEECS
T ss_pred             -----hHH----HHHHHHHHHcCCCEEEEEec
Confidence                 122    23455666677777776554

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.85  E-value=8.3e-09  Score=86.01  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=70.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC---CcEEEeecCCCCcccc------cCCCCeeEEEccCCCHHHHHHHhcC--CCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALDG--VTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~  124 (200)
                      |++|+|+|| |++|+.+++.|++.|   .+|++.+|+.++....      ....++.++.+|++|.+++++++++  +|+
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            468999999 999999999999998   3899999986542110      0113688999999999999999987  899


Q ss_pred             EEEccccCCCCcccchhhHHHHHHHHHHHHHcCCC
Q 029008          125 VISCVGGFGSNSYMYKINGTANINAIRAASEKGVK  159 (200)
Q Consensus       125 vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~  159 (200)
                      ||||+++..            ...++++|.+.|+.
T Consensus        80 Vin~ag~~~------------~~~v~~a~l~~g~~  102 (405)
T 4ina_A           80 VLNIALPYQ------------DLTIMEACLRTGVP  102 (405)
T ss_dssp             EEECSCGGG------------HHHHHHHHHHHTCC
T ss_pred             EEECCCccc------------ChHHHHHHHHhCCC
Confidence            999998632            13567778777764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.84  E-value=6.4e-08  Score=69.82  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=72.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~  132 (200)
                      ..+++|+|+|+ |.+|..+++.|.+.|++|++++|+++.........++.++.+|..+++.+.++ +.++|+||.+.+..
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~   95 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD   95 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence            45679999997 99999999999999999999999865532211133567788999888877765 67899999987641


Q ss_pred             CCCcccchhhHHHHHHHHHHHHH-cCCCEEEEEec
Q 029008          133 GSNSYMYKINGTANINAIRAASE-KGVKRFVYISA  166 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~-~~~~~~v~vSS  166 (200)
                                 .....+.+.++. .+..++|...+
T Consensus        96 -----------~~~~~~~~~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           96 -----------STNFFISMNARYMFNVENVIARVY  119 (155)
T ss_dssp             -----------HHHHHHHHHHHHTSCCSEEEEECS
T ss_pred             -----------HHHHHHHHHHHHHCCCCeEEEEEC
Confidence                       112334555665 55566666554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.83  E-value=3.2e-09  Score=89.96  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=75.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+++|+|+|+ |++|+.+++.|++. |++|++++|+.++........++.++.+|+.|.+++.++++++|+||||++..
T Consensus        21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~   99 (467)
T 2axq_A           21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT   99 (467)
T ss_dssp             --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred             CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence            35789999997 99999999999998 78999999986542211111356778899999999999999999999999864


Q ss_pred             CCC----------cccchhhH--HHHHHHHHHHHHcCC
Q 029008          133 GSN----------SYMYKING--TANINAIRAASEKGV  158 (200)
Q Consensus       133 ~~~----------~~~~~~n~--~~~~~~~~~a~~~~~  158 (200)
                      ...          ...+++++  .....+++.|+++|+
T Consensus       100 ~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv  137 (467)
T 2axq_A          100 FHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI  137 (467)
T ss_dssp             GHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence            211          12233332  334567788888776

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.82  E-value=2.1e-08  Score=77.09  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=54.6

Q ss_pred             CCCeEEEEcc----------------CchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH--
Q 029008           55 PSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK--  116 (200)
Q Consensus        55 ~~~~ilVtGa----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~--  116 (200)
                      .+|+|+||||                +|++|.+++++|+.+|++|+++.|......  ..+.++.++  |+...+++.  
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~--~~~~~~~~~--~v~s~~em~~~   77 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP--EPHPNLSIR--EITNTKDLLIE   77 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC--CCCTTEEEE--ECCSHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--cCCCCeEEE--EHhHHHHHHHH
Confidence            4789999999                899999999999999999999999754321  112355555  454544333  


Q ss_pred             --HHhcCCCEEEEccccC
Q 029008          117 --EALDGVTAVISCVGGF  132 (200)
Q Consensus       117 --~~~~~~d~vi~~ag~~  132 (200)
                        +.+.++|++||+||..
T Consensus        78 v~~~~~~~Dili~aAAvs   95 (232)
T 2gk4_A           78 MQERVQDYQVLIHSMAVS   95 (232)
T ss_dssp             HHHHGGGCSEEEECSBCC
T ss_pred             HHHhcCCCCEEEEcCccc
Confidence              3455799999999954

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.80  E-value=1.5e-08  Score=83.30  Aligned_cols=95  Identities=22%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ...|+|+|.|| |++|+.+++.|.+ .++|.+.+++.+...  .....+..+.+|+.|.+++.++++++|+||+++++.-
T Consensus        14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~--~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~   89 (365)
T 3abi_A           14 GRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLE--KVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFL   89 (365)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHH--HHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGG
T ss_pred             CCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHH--HHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcc
Confidence            45678999998 9999999998864 589999888754421  1134567789999999999999999999999987631


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                                  ...++++|.++|+ ++|=+|
T Consensus        90 ------------~~~v~~~~~~~g~-~yvD~s  108 (365)
T 3abi_A           90 ------------GFKSIKAAIKSKV-DMVDVS  108 (365)
T ss_dssp             ------------HHHHHHHHHHHTC-EEEECC
T ss_pred             ------------cchHHHHHHhcCc-ceEeee
Confidence                        1346677777765 555444

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.76  E-value=5.3e-08  Score=74.62  Aligned_cols=73  Identities=18%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcc----------------CchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHH
Q 029008           54 PPSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE  117 (200)
Q Consensus        54 ~~~~~ilVtGa----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~  117 (200)
                      ..+|+++||||                +|++|.+++++|+++|++|+++.+......    +.++.  ..|+.+.+++.+
T Consensus         6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~----~~g~~--~~dv~~~~~~~~   79 (226)
T 1u7z_A            6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT----PPFVK--RVDVMTALEMEA   79 (226)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC----CTTEE--EEECCSHHHHHH
T ss_pred             CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccccc----CCCCe--EEccCcHHHHHH
Confidence            46899999999                699999999999999999999887652211    22444  458877655543


Q ss_pred             H----hcCCCEEEEccccC
Q 029008          118 A----LDGVTAVISCVGGF  132 (200)
Q Consensus       118 ~----~~~~d~vi~~ag~~  132 (200)
                      .    +.++|++|||||..
T Consensus        80 ~v~~~~~~~Dili~~Aav~   98 (226)
T 1u7z_A           80 AVNASVQQQNIFIGCAAVA   98 (226)
T ss_dssp             HHHHHGGGCSEEEECCBCC
T ss_pred             HHHHhcCCCCEEEECCccc
Confidence            3    45799999999964

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.71  E-value=3.4e-08  Score=71.12  Aligned_cols=75  Identities=19%  Similarity=0.254  Sum_probs=60.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC---cccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS---SLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~  131 (200)
                      .++++|+|+ |.+|+.+++.|.+.|++|++++++++.   ........++.++.+|.+|++.+.++ ++++|+||.+.+.
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            468999997 999999999999999999999997421   11111234689999999999999887 8899999998653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.65  E-value=1.5e-07  Score=69.69  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=60.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH--hcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA--LDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~--~~~~d~vi~~ag  130 (200)
                      .+++|+|+|+ |.+|..+++.|.+. |++|++++++++.... ....++.++.+|.++++.+.++  ++++|+||.+.+
T Consensus        38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~-~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           38 GHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQ-HRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             TTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHH-HHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHH-HHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            4668999996 99999999999999 9999999998654221 1123677888999999888877  788999999765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.56  E-value=1.9e-07  Score=71.06  Aligned_cols=97  Identities=16%  Similarity=0.185  Sum_probs=70.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFGSN  135 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~~~~  135 (200)
                      |+|+|+|+ |.+|..+++.|.++|++|++++++++.........++.++.+|.++++.++++ ++++|+||.+.+..   
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d---   76 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD---   76 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH---
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc---
Confidence            47999997 99999999999999999999998865422111123678999999999999886 78899999876431   


Q ss_pred             cccchhhHHHHHHHHHHHHH-cCCCEEEEEe
Q 029008          136 SYMYKINGTANINAIRAASE-KGVKRFVYIS  165 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~-~~~~~~v~vS  165 (200)
                          ..|    ..+...+++ .+..++|...
T Consensus        77 ----~~n----~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           77 ----EVN----LFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             ----HHH----HHHHHHHHHTSCCCEEEECC
T ss_pred             ----HHH----HHHHHHHHHHcCCCeEEEEE
Confidence                112    233444554 4666666443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.55  E-value=1.3e-07  Score=67.10  Aligned_cols=76  Identities=18%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~  131 (200)
                      ...++|+|+|+ |.+|..+++.|.+.|++|++++++++.... ....++.++.+|.++++.++++ ++++|++|.+.+.
T Consensus         5 ~~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~-~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (140)
T 3fwz_A            5 DICNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDE-LRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPN   81 (140)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHH-HHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred             cCCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHH-HHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence            34568999997 999999999999999999999998654221 1124778899999999988875 5689999987653

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.54  E-value=3.5e-08  Score=80.14  Aligned_cols=107  Identities=13%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--c-----EEEeecCCCC-cc-------cccCCCCeeEEEccCCCHHHHHHHhc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--T-----VASLSRSGRS-SL-------RDSWANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~-----V~~~~r~~~~-~~-------~~~~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      .++|+||||+|++|..++..|+..|.  +     ++++++.... ..       .+....-.    .++...+...+.++
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~----~~~~~~~~~~~~~~   78 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL----KDVIATDKEEIAFK   78 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE----EEEEEESCHHHHTT
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc----CCEEEcCCcHHHhC
Confidence            36899999999999999999998875  5     8888886421 00       01111111    12222234567799


Q ss_pred             CCCEEEEccccCC----CCcccchhhHHHHHHHHHHHHHcCCC--EEEEEec
Q 029008          121 GVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKGVK--RFVYISA  166 (200)
Q Consensus       121 ~~d~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~~~--~~v~vSS  166 (200)
                      ++|+||++||...    .....++.|+..+..+++++.+.+.+  +++.+|.
T Consensus        79 daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN  130 (333)
T 5mdh_A           79 DLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN  130 (333)
T ss_dssp             TCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            9999999998643    33567899999999999999998875  5777765

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.50  E-value=2.1e-07  Score=75.01  Aligned_cols=106  Identities=15%  Similarity=0.129  Sum_probs=74.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcc----cccC-CCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL----RDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~----~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ++|.|+||+|++|..++..|+.+|  .+|.++++++....    .... ..+++.+.    ..++++++++++|+||+++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~~aDvVvi~a   76 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYL----GPEQLPDCLKGCDVVVIPA   76 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEE----SGGGHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEec----CCCCHHHHhCCCCEEEECC
Confidence            489999999999999999999888  68999998761100    0100 11122211    1235778899999999999


Q ss_pred             ccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          130 GGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       130 g~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      |....+    ...+..|+.....+++.+.+.+.+ .||++|-
T Consensus        77 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN  118 (314)
T 1mld_A           77 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (314)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence            864322    456788899999999998887655 6666653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.40  E-value=5.1e-07  Score=69.38  Aligned_cols=96  Identities=14%  Similarity=0.077  Sum_probs=69.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFG  133 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~~  133 (200)
                      ..++++|+|+ |.+|..+++.|.+.|+ |++++++++......  .++.++.+|.+|++.++++ ++++|.||.+.+.. 
T Consensus         8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d-   82 (234)
T 2aef_A            8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDLESD-   82 (234)
T ss_dssp             --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCH-
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCc-
Confidence            3568999998 9999999999999999 999988765422212  5688999999999999887 88999999876421 


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                            +.|    ..+...+++.+.+ ++|.-.
T Consensus        83 ------~~n----~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           83 ------SET----IHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             ------HHH----HHHHHHHHHHCSSSEEEEEC
T ss_pred             ------HHH----HHHHHHHHHHCCCCeEEEEE
Confidence                  122    2344556666654 555433

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.38  E-value=2.3e-07  Score=69.42  Aligned_cols=98  Identities=22%  Similarity=0.236  Sum_probs=63.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHH---Hhc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE---ALD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~~--~~d~vi~~  128 (200)
                      ..+++|+|+||+|++|..+++.+...|++|++++|++++..... ..+... ..|+.+.+..+.   ...  ++|++|+|
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~  114 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RLGVEY-VGDSRSVDFADEILELTDGYGVDVVLNS  114 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-TTCCSE-EEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCE-EeeCCcHHHHHHHHHHhCCCCCeEEEEC
Confidence            35689999999999999999999999999999998754321111 112222 236666543333   332  58999999


Q ss_pred             cccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          129 VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       129 ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      +|..     .       ....++.++..  +++|.+++.
T Consensus       115 ~g~~-----~-------~~~~~~~l~~~--G~~v~~g~~  139 (198)
T 1pqw_A          115 LAGE-----A-------IQRGVQILAPG--GRFIELGKK  139 (198)
T ss_dssp             CCTH-----H-------HHHHHHTEEEE--EEEEECSCG
T ss_pred             CchH-----H-------HHHHHHHhccC--CEEEEEcCC
Confidence            8731     1       12233433333  489988874

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.19  E-value=8.1e-07  Score=73.07  Aligned_cols=77  Identities=18%  Similarity=0.125  Sum_probs=57.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+++++|+|+ |.+|..+++.|...|++|++.+|+.++........+.. +.+|..+.+++.+++.++|+||++++..
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~l~~~~~~~DvVi~~~g~~  240 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR-VITLTATEANIKKSVQHADLLIGAVLVP  240 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS-EEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCce-EEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence            34689999999 99999999999999999999998865421110001111 4567778888999999999999999853

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.16  E-value=2.3e-06  Score=69.54  Aligned_cols=76  Identities=14%  Similarity=0.007  Sum_probs=53.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-----CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d~vi~~  128 (200)
                      ..+++|+|+|++|.+|..+++.+...|++|++++|+.++...... -+.. ...|+.+.+++.+.+.     ++|++|++
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~-~g~~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~~  245 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IGGE-VFIDFTKEKDIVGAVLKATDGGAHGVINV  245 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH-TTCC-EEEETTTCSCHHHHHHHHHTSCEEEEEEC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH-cCCc-eEEecCccHhHHHHHHHHhCCCCCEEEEC
Confidence            356899999999999999999999999999999987654211111 1222 1237764433433332     69999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       246 ~g~  248 (347)
T 2hcy_A          246 SVS  248 (347)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            884

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.15  E-value=5e-06  Score=69.38  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=71.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFGS  134 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~~~  134 (200)
                      .++|+|+|. |.+|+.+++.|.+.|++|++++++++.... ....++.++.+|.++++.++++ ++++|+||.+.+..  
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~-~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~--   79 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIET-LRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP--   79 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHH-HHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSH--
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHH-HHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCCh--
Confidence            468999997 999999999999999999999998665221 1124678899999999999887 78899999876421  


Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCC-EEEEE
Q 029008          135 NSYMYKINGTANINAIRAASEKGVK-RFVYI  164 (200)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~v  164 (200)
                               .....++..+++.+.+ ++|--
T Consensus        80 ---------~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           80 ---------QTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             ---------HHHHHHHHHHHHHCTTCEEEEE
T ss_pred             ---------HHHHHHHHHHHHhCCCCeEEEE
Confidence                     2233455566666554 44433

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.10  E-value=1.9e-06  Score=69.59  Aligned_cols=76  Identities=28%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh-----cCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-----DGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~d~vi~~  128 (200)
                      ..+++++|+||+|++|..+++.+...|++|++++++.++..... .-+.. ...|+.+.+++.+.+     .++|++|+|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~  221 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFD-AAFNYKTVNSLEEALKKASPDGYDCYFDN  221 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCS-EEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCc-EEEecCCHHHHHHHHHHHhCCCCeEEEEC
Confidence            45789999999999999999999999999999998754321111 01222 224776623333322     258999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       222 ~g~  224 (333)
T 1v3u_A          222 VGG  224 (333)
T ss_dssp             SCH
T ss_pred             CCh
Confidence            984

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.04  E-value=9.4e-07  Score=71.91  Aligned_cols=105  Identities=18%  Similarity=0.195  Sum_probs=71.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcc------ccc-CC-CCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL------RDS-WA-NNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~------~~~-~~-~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      .+++|.|+|++|++|..++..++.+|  .+|++++.+.++..      ... .. .++.+       ..++.+.++++|+
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-------t~d~~~al~dADv   79 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-------TSDIKEALTDAKY   79 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-------ESCHHHHHTTEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-------cCCHHHHhCCCCE
Confidence            35799999999999999999999998  48999998643211      010 11 12221       1345677899999


Q ss_pred             EEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCE--EEEEec
Q 029008          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKR--FVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~--~v~vSS  166 (200)
                      ||.++|....+    ...+..|......+++.+.+.+.+-  ++.+|.
T Consensus        80 VvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN  127 (343)
T 3fi9_A           80 IVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN  127 (343)
T ss_dssp             EEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence            99999864322    3457888888888999998887654  455553

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.99  E-value=2.5e-06  Score=68.69  Aligned_cols=75  Identities=20%  Similarity=0.168  Sum_probs=52.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH---hc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA---LD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~~--~~d~vi~~  128 (200)
                      ..+++|+|+||+|.+|..+++.+...|++|+++++++++...... .+... ..|..+.+..+++   ..  ++|++|+|
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~D~vi~~  216 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AGAWQ-VINYREEDLVERLKEITGGKKVRVVYDS  216 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCCE-EEECCCccHHHHHHHHhCCCCceEEEEC
Confidence            357899999999999999999999999999999987543211100 11111 2366555433333   32  58999999


Q ss_pred             cc
Q 029008          129 VG  130 (200)
Q Consensus       129 ag  130 (200)
                      +|
T Consensus       217 ~g  218 (327)
T 1qor_A          217 VG  218 (327)
T ss_dssp             SC
T ss_pred             Cc
Confidence            98

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.97  E-value=6.1e-06  Score=67.27  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH---HHhc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EALD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~~--~~d~vi~~  128 (200)
                      ..+++|+|+||+|.+|..+++.+...|++|+++++++++..... .-+... ..|..+.+..+   +...  ++|++|+|
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~  246 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHE-VFNHREVNYIDKIKKYVGEKGIDIIIEM  246 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSE-EEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHH-HcCCCE-EEeCCCchHHHHHHHHcCCCCcEEEEEC
Confidence            35789999999999999999999999999999998754421111 111221 23665544333   3333  69999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       247 ~G~  249 (351)
T 1yb5_A          247 LAN  249 (351)
T ss_dssp             CHH
T ss_pred             CCh
Confidence            984

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.95  E-value=1.1e-05  Score=64.76  Aligned_cols=77  Identities=12%  Similarity=0.201  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCC---Cccc---cc-CCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR---SSLR---DS-WANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~---~~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ...+++++|+|+ |++|++++..|.+.|. +|++..|+.+   +..+   .. ....+.+...++.+.+++.+.+.++|+
T Consensus       151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi  229 (315)
T 3tnl_A          151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI  229 (315)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence            356889999997 8999999999999998 8999999833   2111   00 001233444567777788888899999


Q ss_pred             EEEccc
Q 029008          125 VISCVG  130 (200)
Q Consensus       125 vi~~ag  130 (200)
                      ||++..
T Consensus       230 IINaTp  235 (315)
T 3tnl_A          230 FTNATG  235 (315)
T ss_dssp             EEECSS
T ss_pred             EEECcc
Confidence            999865

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.95  E-value=3.5e-06  Score=68.02  Aligned_cols=76  Identities=21%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHH---HHHHh--cCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEAL--DGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~--~~~d~vi~~  128 (200)
                      ..+++++|+||+|.+|..+++.+...|++|++++++.++...... -+.. ...|..+.+.   +.+..  .++|++|+|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g~~-~~~d~~~~~~~~~i~~~~~~~~~d~vi~~  221 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-LGCH-HTINYSTQDFAEVVREITGGKGVDVVYDS  221 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCS-EEEETTTSCHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCC-EEEECCCHHHHHHHHHHhCCCCCeEEEEC
Confidence            457899999999999999999999999999999987543211100 1112 1236655433   33333  268999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       222 ~g~  224 (333)
T 1wly_A          222 IGK  224 (333)
T ss_dssp             SCT
T ss_pred             CcH
Confidence            985

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.94  E-value=4.9e-06  Score=67.81  Aligned_cols=74  Identities=19%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHH---HHHHhc-CCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEALD-GVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~-~~d~vi~~ag~  131 (200)
                      ++|+|+||+|.+|..+++.+...|+ +|++++++.++.......-+.. ...|..+.+.   +.+... ++|++|+|+|.
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G~  240 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD-AAINYKKDNVAEQLRESCPAGVDVYFDNVGG  240 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS-EEEETTTSCHHHHHHHHCTTCEEEEEESCCH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-eEEecCchHHHHHHHHhcCCCCCEEEECCCH
Confidence            8999999999999999999999999 9999998754321111001222 2246655433   223222 59999999983

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.93  E-value=5e-06  Score=67.38  Aligned_cols=77  Identities=19%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH----HHHHHHh-cCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS----DSWKEAL-DGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~-~~~d~vi~~  128 (200)
                      ..+++|+|+||+|.+|..+++.+...|++|++++++.++.......-+... ..|..+.    +.+.+.. .++|++|+|
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~  232 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDD-AFNYKEESDLTAALKRCFPNGIDIYFEN  232 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSE-EEETTSCSCSHHHHHHHCTTCEEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCce-EEecCCHHHHHHHHHHHhCCCCcEEEEC
Confidence            357899999999999999999999999999999987544211110112221 2366543    2233332 269999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       233 ~g~  235 (345)
T 2j3h_A          233 VGG  235 (345)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            874

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.90  E-value=1.5e-05  Score=64.42  Aligned_cols=71  Identities=14%  Similarity=0.110  Sum_probs=59.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      .++++|+|+ |.+|+.+++.|.++|+ |++++++++...  ....++.++.+|.+|++.++++ ++++|.+|.+.+
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~--~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~  186 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK--VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE  186 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH--HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred             cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh--HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence            458999997 9999999999999999 999988765532  2235789999999999999987 788999998754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.89  E-value=1.3e-05  Score=64.75  Aligned_cols=77  Identities=18%  Similarity=0.129  Sum_probs=52.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh----cCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL----DGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----~~~d~vi~~a  129 (200)
                      ..+++|+|+|++|.+|..+++.+...|++|+++++++++.......-+... ..|..+.+..+.+.    .++|++|+|+
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~  226 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDG-AIDYKNEDLAAGLKRECPKGIDVFFDNV  226 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSE-EEETTTSCHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCE-EEECCCHHHHHHHHHhcCCCceEEEECC
Confidence            457899999999999999999999999999999987654221101112221 23555544333322    2599999999


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       227 g~  228 (336)
T 4b7c_A          227 GG  228 (336)
T ss_dssp             CH
T ss_pred             Cc
Confidence            84

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.89  E-value=5.5e-05  Score=61.08  Aligned_cols=104  Identities=16%  Similarity=0.244  Sum_probs=72.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------ccc---CCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RDS---WANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      ..++|.|+|+ |.+|..++..|+..|.  +|++++++.++..      ...   ....+.+...|       .+.++++|
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a~~~aD   75 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT-------YEDCKDAD   75 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC-------GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc-------HHHhCCCC
Confidence            3568999996 9999999999999986  8999998654311      111   11244444333       24688999


Q ss_pred             EEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      +||.++|....+    ...+..|..-...+++.+.+.+.+ .++.+|.
T Consensus        76 vVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           76 IVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            999999864432    345678888888888888887655 4554443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.87  E-value=6.5e-06  Score=69.63  Aligned_cols=74  Identities=15%  Similarity=0.253  Sum_probs=59.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      .|+|+|.|+ |-+|..+++.|.++|++|++++++++........-.+.++.+|-++++.++++ ++++|.+|-+.+
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~   77 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTN   77 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCS
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcC
Confidence            478999998 99999999999999999999998865422111123678999999999999986 578999987644

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.86  E-value=7.3e-07  Score=67.34  Aligned_cols=73  Identities=12%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEE-ccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQ-GNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++|+|+||+|.+|..+++.|++.|++|++.+|+.+.........+. .+. .|+. .+++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR-IAGDASIT-GMKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH-HHSSCCEE-EEEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-ccccCCCC-hhhHHHHHhcCCEEEEeCCh
Confidence            4799999889999999999999999999999875432110000000 000 1121 13455667789999998753

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.86  E-value=7.9e-05  Score=60.51  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC---cEEEee-cCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL---TVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +++|+|.||+|.+|+.+++.|.++++   +++.+. ++............+.+.  |+ |++    .++++|+||.|.|.
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~--~~-~~~----~~~~~DvV~~a~g~   78 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVG--DV-DSF----DFSSVGLAFFAAAA   78 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECE--EG-GGC----CGGGCSEEEECSCH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEe--cC-CHH----HhcCCCEEEEcCCc
Confidence            46899999999999999999997765   445544 222111101101112221  22 222    25689999999875


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            .....++.+.+.|++ +|-+|+
T Consensus        79 ~------------~s~~~a~~~~~aG~k-vId~Sa  100 (340)
T 2hjs_A           79 E------------VSRAHAERARAAGCS-VIDLSG  100 (340)
T ss_dssp             H------------HHHHHHHHHHHTTCE-EEETTC
T ss_pred             H------------HHHHHHHHHHHCCCE-EEEeCC
Confidence            2            124456666777774 666665

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.85  E-value=7.8e-06  Score=66.62  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=52.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH---HHhc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EALD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~~--~~d~vi~~  128 (200)
                      ..+++|+|+||+|.+|..+++.+...|++|+++++++++..... .-+.. ...|..+.+..+   +...  ++|++|+|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  238 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KLGAA-AGFNYKKEDFSEATLKFTKGAGVNLILDC  238 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCc-EEEecCChHHHHHHHHHhcCCCceEEEEC
Confidence            35789999999999999999999999999999998754321110 01122 124665544333   3332  68999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       239 ~G~  241 (354)
T 2j8z_A          239 IGG  241 (354)
T ss_dssp             SCG
T ss_pred             CCc
Confidence            985

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.85  E-value=3.3e-06  Score=66.50  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|+|+ |++|++++..|++.|++|++.+|+.++..+  ........+...|+   +.+.+  .++|+||++++.
T Consensus       117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~---~~~~~--~~~DivVn~t~~  190 (271)
T 1nyt_A          117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSM---DELEG--HEFDLIINATSS  190 (271)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCS---GGGTT--CCCSEEEECCSC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecH---HHhcc--CCCCEEEECCCC
Confidence            45789999998 889999999999999999999988644211  00001001112232   22222  589999999985

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.85  E-value=8.2e-05  Score=59.55  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             CCCe-EEEEc-cC-----------------chhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEK-LLVLG-GN-----------------GFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~-ilVtG-a~-----------------G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .+++ |+||+ +|                 |..|.+++++++.+|++|+.+.+...
T Consensus        35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s   90 (313)
T 1p9o_A           35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS   90 (313)
T ss_dssp             TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred             cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            4566 88884 56                 88999999999999999999998644

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.83  E-value=0.0001  Score=59.00  Aligned_cols=103  Identities=16%  Similarity=0.202  Sum_probs=68.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc------cc---CCCCeeEEE-ccCCCHHHHHHHhcCCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------DS---WANNVIWHQ-GNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~---~~~~~~~~~-~Dl~d~~~~~~~~~~~d~  124 (200)
                      +++|.|+|+ |.+|..++..|+..|+ +|.+++++.++...      ..   .....++.. .|      + +.++++|+
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d------~-~a~~~aD~   73 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN------Y-ADTANSDV   73 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC------G-GGGTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCC------H-HHHCCCCE
Confidence            469999998 9999999999999997 88888887543110      00   011222221 22      2 45789999


Q ss_pred             EEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ||.++|....+    ......|......+++.+.+.+.+.+|.+.|
T Consensus        74 Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  119 (309)
T 1ur5_A           74 IVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  119 (309)
T ss_dssp             EEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence            99999864322    2345667777778888888877665655554

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.82  E-value=0.00024  Score=57.42  Aligned_cols=104  Identities=17%  Similarity=0.148  Sum_probs=68.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc------c-----cCCCCeeEEEccCCCHHHHHHHhcCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------D-----SWANNVIWHQGNLLSSDSWKEALDGV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~  122 (200)
                      +.++|.|+|| |.+|..++..|+..|+ +|.+.+++++....      .     ....++.+.       .++++.++++
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-------~d~~ea~~~a   79 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE-------YSYEAALTGA   79 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE-------CSHHHHHTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe-------CCHHHHhCCC
Confidence            3469999998 9999999999999998 99999988643211      0     001122221       2345578899


Q ss_pred             CEEEEccccCCCC---------cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          123 TAVISCVGGFGSN---------SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       123 d~vi~~ag~~~~~---------~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |+||.++|....+         ......|..-...+++.+.+...+-++.+.|
T Consensus        80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  132 (331)
T 1pzg_A           80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  132 (331)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            9999999864322         2234556666677777777766554444443

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.81  E-value=1.4e-05  Score=62.99  Aligned_cols=33  Identities=18%  Similarity=0.400  Sum_probs=26.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC-CCcEEEeec
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLSR   88 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r   88 (200)
                      +++|+|+|++|.+|+.+++.+.+. |++++++..
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d   38 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALE   38 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEEC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            369999999999999999998854 777774443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.80  E-value=6.4e-05  Score=60.67  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------cc--cCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD--SWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      ..+++|.|+|+ |.+|..++..|+..|.  ++++++++.+...      .+  .....+.+...|       .+.++++|
T Consensus         7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~~~aD   78 (326)
T 3vku_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE-------YSDAKDAD   78 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GGGGTTCS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc-------HHHhcCCC
Confidence            35679999997 9999999999999886  8999988653211      01  111234444332       24688999


Q ss_pred             EEEEccccCCC----CcccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       124 ~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      +||.++|....    ....++.|..-...+.+.+.+.+.+ .++.+|
T Consensus        79 iVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt  125 (326)
T 3vku_A           79 LVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             EEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred             EEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            99999996432    2456777877778888888877655 344444

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.76  E-value=2.5e-05  Score=63.72  Aligned_cols=91  Identities=18%  Similarity=0.208  Sum_probs=58.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-----C-cEEEeecCCC--CcccccCC-----CCeeEEEccCCCHHHHHHHhcCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-----L-TVASLSRSGR--SSLRDSWA-----NNVIWHQGNLLSSDSWKEALDGV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-----~-~V~~~~r~~~--~~~~~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~  122 (200)
                      +++|.|.||+|++|+.+++.|.+++     + +++.+.++.+  +......+     ..+.+.  |+ +++    .+.++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~--~~-~~~----~~~~~   81 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE--PT-EAA----VLGGH   81 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE--EC-CHH----HHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec--cC-CHH----HhcCC
Confidence            4699999999999999999999887     4 6777654322  21111000     122222  22 222    35689


Q ss_pred             CEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          123 TAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       123 d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      |+||.|.|...            +..+++.+ +.|+ ++|-+|+.
T Consensus        82 DvVf~alg~~~------------s~~~~~~~-~~G~-~vIDlSa~  112 (352)
T 2nqt_A           82 DAVFLALPHGH------------SAVLAQQL-SPET-LIIDCGAD  112 (352)
T ss_dssp             SEEEECCTTSC------------CHHHHHHS-CTTS-EEEECSST
T ss_pred             CEEEECCCCcc------------hHHHHHHH-hCCC-EEEEECCC
Confidence            99999987642            23456666 6675 78888874

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.73  E-value=4.5e-05  Score=61.79  Aligned_cols=77  Identities=23%  Similarity=0.251  Sum_probs=51.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCC-HHHHHHHhc--CCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEALD--GVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~--~~d~vi~~ag  130 (200)
                      ..+.+|+|+||+|.+|...++.+...|++|++++++.++.........-.++..+ .+ .+.+.+...  ++|++|+|+|
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g  236 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMVVDPIG  236 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEEEECCc
Confidence            3578999999999999999999999999999999876542111111111223222 22 233344443  5999999998


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus       237 ~  237 (342)
T 4eye_A          237 G  237 (342)
T ss_dssp             -
T ss_pred             h
Confidence            5

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.69  E-value=2.1e-05  Score=63.73  Aligned_cols=98  Identities=18%  Similarity=0.116  Sum_probs=62.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHhc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~--~~d~vi~~  128 (200)
                      ..+++++|+|++|.+|..+++.+...|++|+++++++++...... -+... ..|..+.+   .+.+...  ++|++|++
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~ga~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~  242 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA-LGADE-TVNYTHPDWPKEVRRLTGGKGADKVVDH  242 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCSE-EEETTSTTHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCCCE-EEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence            356799999999999999999999999999999987544211110 11221 23665543   3334432  68999999


Q ss_pred             cccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          129 VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       129 ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      +|. ..           ....++.++..  ++++.+++.
T Consensus       243 ~g~-~~-----------~~~~~~~l~~~--G~~v~~g~~  267 (343)
T 2eih_A          243 TGA-LY-----------FEGVIKATANG--GRIAIAGAS  267 (343)
T ss_dssp             SCS-SS-----------HHHHHHHEEEE--EEEEESSCC
T ss_pred             CCH-HH-----------HHHHHHhhccC--CEEEEEecC
Confidence            982 21           12234444433  378888763

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.68  E-value=2.8e-05  Score=63.31  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHH---Hh-cCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE---AL-DGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~-~~~d~vi~~a  129 (200)
                      ..+.+|+|+||+|.+|..+++.+...|++|+++++++++...... -+... ..|..+.+..+.   .. .++|++|+|+
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~-~~~~~~~~~~~~~~~~~~~g~Dvvid~~  243 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-LGAKR-GINYRSEDFAAVIKAETGQGVDIILDMI  243 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCSE-EEETTTSCHHHHHHHHHSSCEEEEEESC
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCCE-EEeCCchHHHHHHHHHhCCCceEEEECC
Confidence            357899999999999999999999999999999987654211111 11111 134444432222   22 3699999999


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       244 g~  245 (353)
T 4dup_A          244 GA  245 (353)
T ss_dssp             CG
T ss_pred             CH
Confidence            85

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.68  E-value=4.8e-05  Score=61.50  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=52.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHhc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~--~~d~vi~~  128 (200)
                      ..+.+|+|+|++|.+|...++.+...|++|++++++.++...... -+... ..|..+.+   .+.+...  ++|++|+|
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lga~~-~~~~~~~~~~~~~~~~~~~~g~Dvvid~  220 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-LGAAY-VIDTSTAPLYETVMELTNGIGADAAIDS  220 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-CCCcE-EEeCCcccHHHHHHHHhCCCCCcEEEEC
Confidence            357899999999999999999999999999999988765321111 11111 12444433   3333333  68999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       221 ~g~  223 (340)
T 3gms_A          221 IGG  223 (340)
T ss_dssp             SCH
T ss_pred             CCC
Confidence            985

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.68  E-value=3.3e-05  Score=62.26  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHhc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~--~~d~vi~~  128 (200)
                      ..+.+|+|+||+|.+|...++.+...|++|++++++.++.........-.+  .|..+.+   .+.+...  ++|++|+|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~--~~~~~~~~~~~~~~~~~~~g~D~vid~  224 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYL--INASKEDILRQVLKFTNGKGVDASFDS  224 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEE--EeCCCchHHHHHHHHhCCCCceEEEEC
Confidence            457899999999999999999999999999999987544211111111122  2444433   3333332  58999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       225 ~g~  227 (334)
T 3qwb_A          225 VGK  227 (334)
T ss_dssp             CGG
T ss_pred             CCh
Confidence            985

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.66  E-value=5.7e-05  Score=57.26  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++++|.|+| +|.+|..+++.|.+.|++|++.+|+.+.... ....++.+.        ++.++++++|+||.+...
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~-~~~~g~~~~--------~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTAR-LFPSAAQVT--------FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHH-HSBTTSEEE--------EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHcCCcee--------cHHHHHhCCCEEEECCCh
Confidence            457899999 6999999999999999999999987543211 111233332        345677889999998764

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=97.66  E-value=5.6e-05  Score=54.51  Aligned_cols=66  Identities=9%  Similarity=0.128  Sum_probs=49.1

Q ss_pred             chhHHHHHHHHHHCCCcEEEeecCCCCccc--------ccCCCCeeEEEccCCCH--HHHHHHhc------CCCEEEEcc
Q 029008           66 GFVGSHICREALDRGLTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSS--DSWKEALD------GVTAVISCV  129 (200)
Q Consensus        66 G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~~~Dl~d~--~~~~~~~~------~~d~vi~~a  129 (200)
                      |.++.+.++.|.+.|++|++..|+......        .....++..+.+|++++  ++++++++      +-|++|||+
T Consensus        26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVnnA  105 (157)
T 3gxh_A           26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCL  105 (157)
T ss_dssp             BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEECS
T ss_pred             CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence            578899999999999999988876543211        01133567788999998  88877654      239999999


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       106 gg  107 (157)
T 3gxh_A          106 AN  107 (157)
T ss_dssp             BS
T ss_pred             CC
Confidence            86

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.65  E-value=7.3e-05  Score=61.13  Aligned_cols=75  Identities=16%  Similarity=0.077  Sum_probs=55.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+|+|+|+ |.+|..+++.+...|++|+++++++++.......-+... ..|..+.+.+.++..++|++|.++|.
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~-v~~~~~~~~~~~~~~~~D~vid~~g~  261 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADS-FLVSRDQEQMQAAAGTLDGIIDTVSA  261 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSE-EEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCce-EEeccCHHHHHHhhCCCCEEEECCCc
Confidence            5679999996 999999999999999999999987654221110112221 23667777777777789999999985

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.64  E-value=5.8e-05  Score=59.98  Aligned_cols=75  Identities=21%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+.+|+|+|++|.+|..+++.+...|++|+++++++++...... -+...+ .|..+.+++.+.+.++|++|+ +|.
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~ga~~~-~~~~~~~~~~~~~~~~d~vid-~g~  198 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-LGAEEA-ATYAEVPERAKAWGGLDLVLE-VRG  198 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-TTCSEE-EEGGGHHHHHHHTTSEEEEEE-CSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCCCEE-EECCcchhHHHHhcCceEEEE-CCH
Confidence            356899999999999999999999999999999987654221111 122221 355441334444578999999 875

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.63  E-value=2.2e-05  Score=63.12  Aligned_cols=76  Identities=22%  Similarity=0.160  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHhc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~--~~d~vi~~  128 (200)
                      ..+.+|+|+||+|.+|...++.+...|++|+++++++++...... -+... ..|..+.+   .+.+...  ++|++|+|
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~~-~~~~~~~~~~~~~~~~~~~~g~Dvvid~  216 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA-LGAWE-TIDYSHEDVAKRVLELTDGKKCPVVYDG  216 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEES
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCCE-EEeCCCccHHHHHHHHhCCCCceEEEEC
Confidence            457899999999999999999999999999999987544211111 11111 12444443   3333333  69999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       217 ~g~  219 (325)
T 3jyn_A          217 VGQ  219 (325)
T ss_dssp             SCG
T ss_pred             CCh
Confidence            985

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.62  E-value=1.6e-05  Score=65.03  Aligned_cols=74  Identities=20%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc--cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      .+++|+|+|+ |.+|..+++.+...|++|++.+|+.++....  .....+..   +..+.+++.+.+.++|+||++++..
T Consensus       166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~DvVI~~~~~~  241 (361)
T 1pjc_A          166 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVEL---LYSNSAEIETAVAEADLLIGAVLVP  241 (361)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEE---EECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEe---eeCCHHHHHHHHcCCCEEEECCCcC
Confidence            4479999999 9999999999999999999999986542111  11112222   2234566777788999999998753

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.61  E-value=0.00017  Score=60.76  Aligned_cols=95  Identities=15%  Similarity=0.265  Sum_probs=62.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-C---cEEEeecCCCCcccccCCCCeeEEEccCCCH---HHHHHHhcCCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-L---TVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEALDGVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~d~vi~~  128 (200)
                      .++|+|+|+ |.+|+.+++.|+++. .   +|++++...... ......++.+...++++.   +.+.+++++.|+|||+
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~   90 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-DVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDV   90 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-CHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhh-hHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEEC
Confidence            458999995 999999999999874 4   688887654432 111111456666666443   3355677767999985


Q ss_pred             cccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          129 VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       129 ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                      +-+..            ...++++|.+.|+ ++|-++
T Consensus        91 s~~~~------------~l~Im~acleaGv-~YlDTa  114 (480)
T 2ph5_A           91 SIGIS------------SLALIILCNQKGA-LYINAA  114 (480)
T ss_dssp             CSSSC------------HHHHHHHHHHHTC-EEEESS
T ss_pred             Ccccc------------CHHHHHHHHHcCC-CEEECC
Confidence            53321            2567899999987 444333

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.60  E-value=0.00049  Score=55.27  Aligned_cols=103  Identities=10%  Similarity=0.104  Sum_probs=66.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      +++|.|+|+ |++|..++..|+..|.  +|.+++.+.++...      ..  ....+.+..   .+    .+.++++|+|
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~----~~a~~~aDvV   78 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GD----YSDVKDCDVI   78 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE---CC----HHHhCCCCEE
Confidence            468999998 9999999999999987  89999987644211      10  111232221   12    3458899999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |.++|....+    ...+..|+.....+++.+.+.+.+-+|.+.|
T Consensus        79 ii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (318)
T 1y6j_A           79 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  123 (318)
T ss_dssp             EECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             EEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence            9999864322    2345677777788888887766554444444

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.59  E-value=0.00012  Score=57.57  Aligned_cols=72  Identities=17%  Similarity=0.174  Sum_probs=43.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC-CCcEEEe-ecCCCCcccc--cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRSSLRD--SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      +++|.|+|++|.+|+.+++.+.+. +.+++++ +|+.+.....  ....+...   ++.-.++++++++++|+||.+..
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~---gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQT---GVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCC---SCBCBCCHHHHHHHCSEEEECSC
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCC---CceecCCHHHHhcCCCEEEEcCC
Confidence            469999999999999999999876 5677664 5553321100  00001000   12122345566667899998753

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.59  E-value=8.8e-05  Score=58.52  Aligned_cols=69  Identities=19%  Similarity=0.093  Sum_probs=51.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++++|+|+ |++|++++..|.+.|+ +|++..|+.++.....  .++...     ..+++.+.+.++|+||++..
T Consensus       115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la--~~~~~~-----~~~~~~~~~~~aDiVInaTp  184 (277)
T 3don_A          115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWS--LNINKI-----NLSHAESHLDEFDIIINTTP  184 (277)
T ss_dssp             GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC--SCCEEE-----CHHHHHHTGGGCSEEEECCC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--Hhcccc-----cHhhHHHHhcCCCEEEECcc
Confidence            35789999997 8999999999999998 8999999866532211  122222     24556777888999999864

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.59  E-value=0.00063  Score=55.67  Aligned_cols=91  Identities=16%  Similarity=0.211  Sum_probs=51.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCC-cccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRS-SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +.+|.|.||||++|..+++.|.++++   ++..+...... ...........+.  ++. ++    .++++|+||.|.|.
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~--~~~-~~----~~~~~Dvvf~a~~~   74 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIE--ETT-ET----AFEGVDIALFSAGS   74 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEE--ECC-TT----TTTTCSEEEECSCH
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEe--eCC-HH----HhcCCCEEEECCCh
Confidence            56999999999999999999988765   33444322211 1111111112222  221 22    25789999999874


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            .+...+..+.+.|+ ++|-.|+
T Consensus        75 ~------------~s~~~a~~~~~~G~-~vIDlSa   96 (366)
T 3pwk_A           75 S------------TSAKYAPYAVKAGV-VVVDNTS   96 (366)
T ss_dssp             H------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             H------------hHHHHHHHHHHCCC-EEEEcCC
Confidence            2            12334444555565 4665555

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.58  E-value=0.00013  Score=58.50  Aligned_cols=77  Identities=14%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCC---ccc---cc-CCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS---SLR---DS-WANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~---~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ...+++++|+|+ |+.|++++..|.+.|. +|++..|+.++   ..+   .. ...+..+...++.+.+.+.+.+.++|+
T Consensus       145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di  223 (312)
T 3t4e_A          145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI  223 (312)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred             CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence            356789999997 9999999999999998 89999998432   111   00 011233334466565445667778999


Q ss_pred             EEEccc
Q 029008          125 VISCVG  130 (200)
Q Consensus       125 vi~~ag  130 (200)
                      |||+..
T Consensus       224 IINaTp  229 (312)
T 3t4e_A          224 LTNGTK  229 (312)
T ss_dssp             EEECSS
T ss_pred             EEECCc
Confidence            999865

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.58  E-value=0.00033  Score=56.98  Aligned_cols=94  Identities=15%  Similarity=0.160  Sum_probs=57.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccC-CCCeeE-EEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSW-ANNVIW-HQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~~~~~-~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      +++|.|.||+|++|+.+++.|.++.. +++.+.+..+....... ...+.- ....+.+.+   + +.++|+||.|.|..
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~---~-~~~vDvV~~a~g~~   79 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPE---K-LEPADILVLALPHG   79 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGG---G-CCCCSEEEECCCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchh---H-hcCCCEEEEcCCcH
Confidence            46899999999999999999998765 77776654322111000 000000 011122332   2 57899999998763


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            ....++.+.+.|+ ++|-.|+
T Consensus        80 ~------------s~~~a~~~~~aG~-~VId~Sa  100 (345)
T 2ozp_A           80 V------------FAREFDRYSALAP-VLVDLSA  100 (345)
T ss_dssp             H------------HHHTHHHHHTTCS-EEEECSS
T ss_pred             H------------HHHHHHHHHHCCC-EEEEcCc
Confidence            2            2344566667776 5887776

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.57  E-value=0.00049  Score=56.46  Aligned_cols=70  Identities=16%  Similarity=0.184  Sum_probs=56.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ..+++|+|.|+ |.+|+.+++.+.+.|++|++++..+.......   --.++..|..|.+.+.++.+.+|+|..
T Consensus        10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~---ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A           10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYV---AHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTGGG---SSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhhhh---CCEEEECCCCCHHHHHHHHHhCCccee
Confidence            45789999997 89999999999999999999987655432211   124667899999999999989998855

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.56  E-value=5.8e-05  Score=61.21  Aligned_cols=76  Identities=22%  Similarity=0.254  Sum_probs=52.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHH---HHHHh--cCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEAL--DGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~--~~~d~vi~  127 (200)
                      ..+++++|+|++|.+|..+++.+... |++|+++++++++...... -+... ..|..+.+.   +.++.  .++|++|+
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~  246 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-AGADY-VINASMQDPLAEIRRITESKGVDAVID  246 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-HTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCCE-EecCCCccHHHHHHHHhcCCCceEEEE
Confidence            35689999999889999999999999 9999999887544211100 01111 135555433   44555  36999999


Q ss_pred             cccc
Q 029008          128 CVGG  131 (200)
Q Consensus       128 ~ag~  131 (200)
                      ++|.
T Consensus       247 ~~g~  250 (347)
T 1jvb_A          247 LNNS  250 (347)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9985

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.56  E-value=5.1e-06  Score=58.93  Aligned_cols=71  Identities=13%  Similarity=0.093  Sum_probs=50.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      +++++|+|+ |.+|..+++.|.+.|++|++.+|+.++.......-++...  +   .+++.++++++|+||.+.+..
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~--~---~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYV--L---INDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEE--E---CSCHHHHHHTCSEEEECSCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceE--e---ecCHHHHhcCCCEEEEeCCCC
Confidence            689999997 9999999999999999998888876542111100112222  1   233566778999999998754

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.56  E-value=0.00035  Score=56.05  Aligned_cols=107  Identities=16%  Similarity=0.135  Sum_probs=70.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-C--CcEEEeecCCCCc---cc-ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-G--LTVASLSRSGRSS---LR-DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g--~~V~~~~r~~~~~---~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ++|.|+||+|.+|..++..|..+ +  .++++++..+...   .+ ........+... ..  ++..+.++++|+||.++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~-~~--~~~~~~~~~aDivii~a   77 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SG--EDATPALEGADVVLISA   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEE-CS--SCCHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEe-cC--CCcHHHhCCCCEEEEeC
Confidence            58999999999999999999875 5  4888888875110   00 011112222211 00  11246788999999999


Q ss_pred             ccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          130 GGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       130 g~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      |....+    ...++.|..-...+.+.+.+.+.+ .++.+|.
T Consensus        78 g~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN  119 (312)
T 3hhp_A           78 GVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (312)
T ss_dssp             SCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            965432    456788888888888888877655 4555553

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.56  E-value=5.9e-05  Score=60.13  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++++|+|+ |++|+.++..|++.|+ +|++..|+.++..+  ........    ++.+.+++.+.+.++|+||++.+
T Consensus       139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~----~~~~~~~~~~~~~~aDivIn~t~  213 (297)
T 2egg_A          139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS----AYFSLAEAETRLAEYDIIINTTS  213 (297)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC----CEECHHHHHHTGGGCSEEEECSC
T ss_pred             CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC----ceeeHHHHHhhhccCCEEEECCC
Confidence            46789999998 8999999999999998 89999988644211  01111100    11233557777889999999987


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus       214 ~  214 (297)
T 2egg_A          214 V  214 (297)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=97.54  E-value=0.00083  Score=57.98  Aligned_cols=68  Identities=15%  Similarity=0.263  Sum_probs=58.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      ++++|.|+ |-+|..+++.|.+.|++|++++++++...+.     ..++.+|.+|++.++++ ++++|.+|-+.+
T Consensus       349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~-----~~~i~gD~t~~~~L~~agi~~ad~vi~~~~  417 (565)
T 4gx0_A          349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESPVCND-----HVVVYGDATVGQTLRQAGIDRASGIIVTTN  417 (565)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCSSCCS-----SCEEESCSSSSTHHHHHTTTSCSEEEECCS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHHHhhc-----CCEEEeCCCCHHHHHhcCccccCEEEEECC
Confidence            79999998 9999999999999999999999987764321     18999999999999875 567999998765

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.52  E-value=0.00029  Score=56.02  Aligned_cols=37  Identities=24%  Similarity=0.444  Sum_probs=33.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      ++++|.|+||.|.+|..++..|.+.|++|++.+|+..
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            5678999997899999999999999999999987643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.51  E-value=4.2e-05  Score=62.97  Aligned_cols=74  Identities=20%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--cccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|+|+ |.+|..+++.+...|++|++.+|+.++..  .......+   ..+..+.+++.+.+.++|+||.+++.
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~---~~~~~~~~~l~~~l~~aDvVi~~~~~  241 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRI---HTRYSSAYELEGAVKRADLVIGAVLV  241 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSS---EEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCee---EeccCCHHHHHHHHcCCCEEEECCCc
Confidence            35789999998 99999999999999999999998765421  11111222   12344566788888899999999874

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.50  E-value=0.00077  Score=54.76  Aligned_cols=107  Identities=18%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCCc--------ccccC-CCCeeEEEccCCCHHHHHHH
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSS--------LRDSW-ANNVIWHQGNLLSSDSWKEA  118 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--------~~~~~-~~~~~~~~~Dl~d~~~~~~~  118 (200)
                      ...||.|+||+|.||+.++..|+....       ++.+++..+...        .+... +.....+..+     +..+.
T Consensus        23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~-----~~~~a   97 (345)
T 4h7p_A           23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA-----DPRVA   97 (345)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES-----CHHHH
T ss_pred             CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC-----ChHHH
Confidence            345999999999999999998887542       577777654211        01111 1112222221     23567


Q ss_pred             hcCCCEEEEccccCCCC----cccchhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 029008          119 LDGVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (200)
Q Consensus       119 ~~~~d~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~-~~-~~v~vSS  166 (200)
                      ++++|+||-+||....+    ++.++.|..-...+.+...+.. .. .++.+|.
T Consensus        98 ~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN  151 (345)
T 4h7p_A           98 FDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN  151 (345)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             hCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence            99999999999975433    4578888888888888887754 33 4555553

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.49  E-value=0.0001  Score=60.19  Aligned_cols=76  Identities=21%  Similarity=0.152  Sum_probs=50.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHh-cCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEAL-DGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~-~~~d~vi~~a  129 (200)
                      ..+.+|+|+||+|.+|..+++.+...|++|+++++++++...... -+...+ .|..+.+   .+.+.. .++|++|+|+
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~~~-~~~~~~~~~~~~~~~~~~g~D~vid~~  239 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRP-INYKTEPVGTVLKQEYPEGVDVVYESV  239 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEE-EETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-cCCcEE-EecCChhHHHHHHHhcCCCCCEEEECC
Confidence            356799999999999999999999999999999987543211111 122211 2444332   222222 2689999998


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       240 g~  241 (362)
T 2c0c_A          240 GG  241 (362)
T ss_dssp             CT
T ss_pred             CH
Confidence            84

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.48  E-value=0.00053  Score=53.15  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=64.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCc------------------cc-------ccCC-CCeeEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS------------------LR-------DSWA-NNVIWHQG  107 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~------------------~~-------~~~~-~~~~~~~~  107 (200)
                      ..++|+|+|+ |++|..+++.|...|. ++++++++.-..                  .+       ...+ .+++.+..
T Consensus        30 ~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           30 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            4579999997 9999999999999997 888888875110                  00       0011 13455555


Q ss_pred             cCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       108 Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ++. .+.+.+.++++|+||.+....           ..-..+.++|.+.++ .+|+.+.
T Consensus       109 ~~~-~~~~~~~~~~~DvVi~~~d~~-----------~~~~~l~~~~~~~~~-p~i~~~~  154 (249)
T 1jw9_B          109 LLD-DAELAALIAEHDLVLDCTDNV-----------AVRNQLNAGCFAAKV-PLVSGAA  154 (249)
T ss_dssp             CCC-HHHHHHHHHTSSEEEECCSSH-----------HHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             cCC-HhHHHHHHhCCCEEEEeCCCH-----------HHHHHHHHHHHHcCC-CEEEeee
Confidence            564 456778889999999985321           112345566666665 3555443

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.47  E-value=0.00075  Score=54.30  Aligned_cols=103  Identities=16%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc------ccc---CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL------RDS---WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~------~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      +++|.|+|+ |.+|..++..|+..|. +|+++++++++..      .+.   ......+...+  |    .+.++++|+|
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~--d----~~a~~~aDvV   77 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTN--D----YKDLENSDVV   77 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEES--C----GGGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcC--C----HHHHCCCCEE
Confidence            468999996 9999999999999988 9999998865421      010   01123332111  2    2478899999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      |.++|....+    ...+..|..-...+++.+.+.+.+ .++.+|
T Consensus        78 Ii~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt  122 (321)
T 3p7m_A           78 IVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT  122 (321)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             EEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            9999865433    234667888788888888777655 455554

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.47  E-value=0.00063  Score=54.82  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=70.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc------ccc---CCCCeeEE-EccCCCHHHHHHHhcCCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL------RDS---WANNVIWH-QGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~------~~~---~~~~~~~~-~~Dl~d~~~~~~~~~~~d~  124 (200)
                      +++|.|+|+ |.+|..++..|+..|+ +|+++++++++..      ...   ......+. ..|      + +.++++|+
T Consensus         7 ~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d------~-~a~~~aDi   78 (324)
T 3gvi_A            7 RNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND------Y-AAIEGADV   78 (324)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS------G-GGGTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC------H-HHHCCCCE
Confidence            469999998 9999999999999998 9999998875421      000   01122222 122      2 57889999


Q ss_pred             EEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      ||.++|....+    ...+..|..-...+++.+.+.+.+ .++.+|.
T Consensus        79 VIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           79 VIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             EEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            99999864322    345677888788888888777655 4555553

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.47  E-value=0.00043  Score=55.00  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=70.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------ccc---CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RDS---WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      |+|.|+|+ |.+|..++..|+..|+  +|.+.+++++...      .+.   ......+...+  |    .++++++|+|
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~--d----~~a~~~aDiV   73 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--D----YSLLKGSEII   73 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEES--C----GGGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeC--C----HHHhCCCCEE
Confidence            58999999 9999999999999997  8999998764421      000   11222332221  2    3578899999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      |.++|....+    ...+..|..-...+++.+.+.+.+ .++.+|.
T Consensus        74 Viaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            9999865433    345677877788888888887655 4555553

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.46  E-value=0.00027  Score=57.79  Aligned_cols=91  Identities=19%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccc----c-CCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD----S-WANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~----~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ++|.|.||+|++|+.+++.|.++.. +++.+.+..+.....    . ....+   ..|+.-.+  ++.++++|+||.|.+
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v---~~dl~~~~--~~~~~~vDvVf~atp   91 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQK---LPTLVSVK--DADFSTVDAVFCCLP   91 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSC---CCCCBCGG--GCCGGGCSEEEECCC
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcc---cccceecc--hhHhcCCCEEEEcCC
Confidence            5899999999999999999998864 777776543221110    0 01111   12332222  335678999999987


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ...            +...+..+ +.|+ ++|-.|+
T Consensus        92 ~~~------------s~~~a~~~-~aG~-~VId~sa  113 (359)
T 1xyg_A           92 HGT------------TQEIIKEL-PTAL-KIVDLSA  113 (359)
T ss_dssp             TTT------------HHHHHHTS-CTTC-EEEECSS
T ss_pred             chh------------HHHHHHHH-hCCC-EEEECCc
Confidence            532            13345555 6665 6777776

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.46  E-value=0.00021  Score=57.34  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=70.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCC-CCccc-------cc---CCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG-RSSLR-------DS---WANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~-~~~~~-------~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      .++|.|+|+ |.+|..++..|+..|+ +|+++++++ +...+       ..   ......+...+  |    .+.++++|
T Consensus         8 ~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d----~~a~~~aD   80 (315)
T 3tl2_A            8 RKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS--D----YADTADSD   80 (315)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES--C----GGGGTTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC--C----HHHhCCCC
Confidence            468999997 9999999999999999 999999873 11110       00   01112222111  1    24678999


Q ss_pred             EEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      +||.++|....+    ...+..|..-...+.+.+.+.+.+ .++.+|.
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            999999865433    345677888888888888877655 4555553

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.46  E-value=0.00041  Score=55.69  Aligned_cols=103  Identities=15%  Similarity=0.112  Sum_probs=69.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------ccc---CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RDS---WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      |+|.|+|+ |.+|..++..|+..|.  +|+++++++++..      .+.   ......+...|  +    .+.++++|+|
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~aDvV   73 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDSDVC   73 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCCCEE
Confidence            58999997 9999999999999886  8999998875421      000   01223333222  1    3468899999


Q ss_pred             EEccccCCC----CcccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      |.++|....    ....+..|..-...+.+.+.+.+.+ .++.+|.
T Consensus        74 ii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           74 IITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             EECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             EECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            999986532    2456678888888888888887655 4454443

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.44  E-value=0.00051  Score=54.60  Aligned_cols=103  Identities=15%  Similarity=0.071  Sum_probs=70.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------cc---cCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD---SWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      |||.|+|+ |.+|..++..|+.++.  ++.+++..++...      .+   .......+...+  |.    +.++++|+|
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~----~~~~~aDvV   73 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLKGSEII   73 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CG----GGGTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CH----HHhCCCCEE
Confidence            58999996 9999999999998874  7888887653211      00   012223333322  22    357899999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |-.||....+    ...+..|..-...+.+.+.+.+.+-++.+-|
T Consensus        74 vitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs  118 (294)
T 2x0j_A           74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             EECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             EEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            9999965433    5677889888888999998887664444443

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.44  E-value=0.001  Score=53.79  Aligned_cols=106  Identities=15%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------ccc--CCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RDS--WANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      ...++|.|+|+ |.+|..++..|+..|.  +|++++++.+...      .+.  .......+..+  |.   + .++++|
T Consensus        17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~--d~---~-~~~~aD   89 (331)
T 4aj2_A           17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSK--DY---S-VTANSK   89 (331)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECS--SG---G-GGTTEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcC--CH---H-HhCCCC
Confidence            35679999997 9999999999999986  8999988653211      010  11122222221  22   2 588999


Q ss_pred             EEEEccccCCC----CcccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      +||.++|....    ....++.|..-...+.+.+.+.+.+ .++.+|.
T Consensus        90 iVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99999996432    3467788888888888888887655 4555553

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.43  E-value=9.5e-05  Score=58.52  Aligned_cols=73  Identities=8%  Similarity=0.107  Sum_probs=51.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccc---cC--CCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD---SW--ANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~---~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ..+++++|+|+ |++|++++..|.+.|. +|++.+|+.++..+.   ..  ...+.+...++   +++.+.+.++|+||+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~---~~l~~~l~~~DiVIn  200 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA---RGIEDVIAAADGVVN  200 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS---TTHHHHHHHSSEEEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH---HHHHHHHhcCCEEEE
Confidence            46789999998 8999999999999998 699999886542210   00  01223333333   345667778999999


Q ss_pred             ccc
Q 029008          128 CVG  130 (200)
Q Consensus       128 ~ag  130 (200)
                      +..
T Consensus       201 aTp  203 (283)
T 3jyo_A          201 ATP  203 (283)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            875

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.43  E-value=0.00075  Score=54.63  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=56.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC---CcEEEeecCCCC-cccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRS-SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g---~~V~~~~r~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +++|.|.||+|++|+.+++.|.+++   .+++.+....+. .........+.+.  |+ |++    .++++|+||.|.|.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~--~~-~~~----~~~~vDvVf~a~g~   75 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQ--NV-EEF----DWSQVHIALFSAGG   75 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEE--EG-GGC----CGGGCSEEEECSCH
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEe--cC-ChH----HhcCCCEEEECCCc
Confidence            5789999999999999999999884   366666532211 1111111122332  22 122    34689999999875


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      .            .+...++.+.+.|+ ++|-.|+.
T Consensus        76 ~------------~s~~~a~~~~~~G~-~vId~s~~   98 (336)
T 2r00_A           76 E------------LSAKWAPIAAEAGV-VVIDNTSH   98 (336)
T ss_dssp             H------------HHHHHHHHHHHTTC-EEEECSST
T ss_pred             h------------HHHHHHHHHHHcCC-EEEEcCCc
Confidence            3            12345666667776 67777763

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.42  E-value=0.00013  Score=59.06  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=60.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHh--cCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEAL--DGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~--~~~d~vi~~ag  130 (200)
                      .++++|+||+|.+|...++.+...|++|++++++.++...... -+... ..|..+.+   .+.+..  .++|++|.|+|
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~~-~~~~~~~~~~~~v~~~~~~~g~D~vid~~g  242 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD-IGAAH-VLNEKAPDFEATLREVMKAEQPRIFLDAVT  242 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH-HTCSE-EEETTSTTHHHHHHHHHHHHCCCEEEESSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCCE-EEECCcHHHHHHHHHHhcCCCCcEEEECCC
Confidence            3799999999999999999999999999999987655211111 11211 12444433   233333  27999999998


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                      ..            .....++.++.  .++++.++..
T Consensus       243 ~~------------~~~~~~~~l~~--~G~iv~~G~~  265 (349)
T 3pi7_A          243 GP------------LASAIFNAMPK--RARWIIYGRL  265 (349)
T ss_dssp             HH------------HHHHHHHHSCT--TCEEEECCCS
T ss_pred             Ch------------hHHHHHhhhcC--CCEEEEEecc
Confidence            52            11223344333  3588888753

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=97.41  E-value=0.0014  Score=53.62  Aligned_cols=86  Identities=16%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHH-CCC---cEEEeecCCCC-cccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALD-RGL---TVASLSRSGRS-SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~-~g~---~V~~~~r~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      |++|.|.||+|++|+.+++.++. +++   .++.+..+... .........+.+  .|..|++.    ++++|+||.|.|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~--~~~~~~~~----~~~~DvVf~a~g   74 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTL--QDAFDLEA----LKALDIIVTCQG   74 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBC--EETTCHHH----HHTCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEE--EecCChHH----hcCCCEEEECCC
Confidence            46899999999999999995444 443   34444443211 111011112222  23444443    358999999987


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHHHcCCC
Q 029008          131 GFGSNSYMYKINGTANINAIRAASEKGVK  159 (200)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~a~~~~~~  159 (200)
                      ..            .+...+..+.+.|++
T Consensus        75 ~~------------~s~~~a~~~~~~G~k   91 (367)
T 1t4b_A           75 GD------------YTNEIYPKLRESGWQ   91 (367)
T ss_dssp             HH------------HHHHHHHHHHHTTCC
T ss_pred             ch------------hHHHHHHHHHHCCCC
Confidence            42            233455666677774

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.41  E-value=0.00032  Score=57.40  Aligned_cols=75  Identities=15%  Similarity=0.107  Sum_probs=50.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh--cCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL--DGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vi~~ag~  131 (200)
                      ..+.+|+|+||+|.+|...++.+...|++|+++++. ++ .+....-+... ..|..+.+..+++.  .++|++|.++|.
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~-~~-~~~~~~lGa~~-v~~~~~~~~~~~~~~~~g~D~vid~~g~  258 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQ-DA-SELVRKLGADD-VIDYKSGSVEEQLKSLKPFDFILDNVGG  258 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECG-GG-HHHHHHTTCSE-EEETTSSCHHHHHHTSCCBSEEEESSCT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCh-HH-HHHHHHcCCCE-EEECCchHHHHHHhhcCCCCEEEECCCC
Confidence            456799999999999999999999999999988743 22 11111112221 12555444333333  479999999885

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.40  E-value=0.0005  Score=56.08  Aligned_cols=93  Identities=18%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCC---cccccCC-----------CCeeEEEccCCCHHHHHHHh
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRS---SLRDSWA-----------NNVIWHQGNLLSSDSWKEAL  119 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~---~~~~~~~-----------~~~~~~~~Dl~d~~~~~~~~  119 (200)
                      |+++|.|.||+|++|+.+++.|.+++ .+|+++.++...   .......           ..+.+...   |++   +++
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~   80 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPT---DPK---HEE   80 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEES---CTT---SGG
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeC---CHH---HHh
Confidence            34699999999999999999998775 478777643211   1100000           01111111   222   234


Q ss_pred             c-CCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          120 D-GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       120 ~-~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      + ++|+||.+.+..            .....++.+.+.|+ ++|-.|+
T Consensus        81 ~~~~DvV~~atp~~------------~~~~~a~~~~~aG~-~VId~s~  115 (354)
T 1ys4_A           81 FEDVDIVFSALPSD------------LAKKFEPEFAKEGK-LIFSNAS  115 (354)
T ss_dssp             GTTCCEEEECCCHH------------HHHHHHHHHHHTTC-EEEECCS
T ss_pred             cCCCCEEEECCCch------------HHHHHHHHHHHCCC-EEEECCc
Confidence            6 899999998752            12344566667776 4666665

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.39  E-value=2.3e-05  Score=62.08  Aligned_cols=73  Identities=14%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc--CCCC---eeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS--WANN---VIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~---~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ..+++++|+|+ |++|++++..|++.| +|++.+|+.++..+..  ....   ...+.+|+.+.   .+.+.++|+||+|
T Consensus       126 l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~---~~~~~~~DilVn~  200 (287)
T 1nvt_A          126 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL---DVDLDGVDIIINA  200 (287)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT---TCCCTTCCEEEEC
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeH---HHhhCCCCEEEEC
Confidence            45789999998 599999999999999 9999988754321100  0000   00012233331   3445679999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       201 ag~  203 (287)
T 1nvt_A          201 TPI  203 (287)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            985

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=97.39  E-value=3e-05  Score=66.54  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=56.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHH-HhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE-ALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~~ag~~  132 (200)
                      ..+++++|||| |++|++++..|++.|++|+++.|+.++..+....-+..++  ++.|   +.+ ....+|++|||+|..
T Consensus       362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~~--~~~d---l~~~~~~~~DilVN~agvg  435 (523)
T 2o7s_A          362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKAL--SLTD---LDNYHPEDGMVLANTTSMG  435 (523)
T ss_dssp             ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC-CE--ETTT---TTTC--CCSEEEEECSSTT
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCcee--eHHH---hhhccccCceEEEECCCCC
Confidence            35679999999 7999999999999999999999875442110000011112  2222   222 123589999999852


Q ss_pred             C---------------CCcccchhhHHHH-HHHHHHHHHcCC
Q 029008          133 G---------------SNSYMYKINGTAN-INAIRAASEKGV  158 (200)
Q Consensus       133 ~---------------~~~~~~~~n~~~~-~~~~~~a~~~~~  158 (200)
                      .               .+...+++|+.+. ..+++.+++.|.
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~  477 (523)
T 2o7s_A          436 MQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGA  477 (523)
T ss_dssp             CTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTC
T ss_pred             CCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCC
Confidence            1               1123566765442 245666665564

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.38  E-value=0.0007  Score=47.65  Aligned_cols=87  Identities=17%  Similarity=0.274  Sum_probs=56.2

Q ss_pred             CCCeEEEEccC---chhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..++|.|+|++   |.+|..+++.|++.|++|+.+..+.++.      .++.++       .++.++.+.+|+++-+...
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i------~G~~~~-------~s~~el~~~vDlvii~vp~   79 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------EGLKCY-------RSVRELPKDVDVIVFVVPP   79 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEECB-------SSGGGSCTTCCEEEECSCH
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE------CCeeec-------CCHHHhCCCCCEEEEEeCH
Confidence            46789999987   8999999999999999977766543110      122221       1223344478988887542


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                                  .....+++.+.+.|++.++..++
T Consensus        80 ------------~~v~~v~~~~~~~g~~~i~~~~~  102 (138)
T 1y81_A           80 ------------KVGLQVAKEAVEAGFKKLWFQPG  102 (138)
T ss_dssp             ------------HHHHHHHHHHHHTTCCEEEECTT
T ss_pred             ------------HHHHHHHHHHHHcCCCEEEEcCc
Confidence                        12234556666778877666554

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.37  E-value=0.001  Score=52.98  Aligned_cols=101  Identities=17%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      ++|.|+|+ |.+|..++..|+..|+  +|++++++.++...      ..  ......+.. +  +.    +.++++|+||
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~--~~----~a~~~aDvVI   72 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-G--GH----SELADAQVVI   72 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-E--CG----GGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-C--CH----HHhCCCCEEE
Confidence            48999998 9999999999999998  99999987542110      00  011223322 1  22    3578999999


Q ss_pred             EccccCCC----CcccchhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 029008          127 SCVGGFGS----NSYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (200)
Q Consensus       127 ~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~-~v~vS  165 (200)
                      .+++....    ....+..|......+++.+.+.+.+. ++.+|
T Consensus        73 i~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t  116 (304)
T 2v6b_A           73 LTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS  116 (304)
T ss_dssp             ECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred             EcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            99975432    23455667777777777777665443 44444

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=97.36  E-value=0.0011  Score=54.25  Aligned_cols=69  Identities=22%  Similarity=0.266  Sum_probs=53.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      |++|+|+|+ |.+|+.+++.+.+.|++|++++..+....... .  -.++..|..|.+.+.++..++|+|+..
T Consensus         1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~~~-~--~~~~~~~~~d~~~l~~~~~~~d~v~~~   69 (380)
T 3ax6_A            1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAGQV-A--DEQIVAGFFDSERIEDLVKGSDVTTYD   69 (380)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTGGG-S--SEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchhhh-C--ceEEECCCCCHHHHHHHHhcCCEEEec
Confidence            478999997 89999999999999999999887644321111 1  135677899999998888899998864

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=97.36  E-value=0.00049  Score=57.36  Aligned_cols=70  Identities=23%  Similarity=0.204  Sum_probs=55.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ..+++|+|.|+ |.+|+.+++.+.+.|++|++++..+.......   .-.++..|+.|.+.+.++.+++|+|+.
T Consensus        33 ~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~---ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           33 LPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAGAV---ADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHHHH---SSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchhhh---CCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            35679999997 89999999999999999999976554322111   114566899999999999999999985

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.35  E-value=0.0017  Score=53.37  Aligned_cols=70  Identities=17%  Similarity=0.184  Sum_probs=55.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ..+++|+|.|+ |.+|+.+++.+.+.|++|++++..+......   ..-..+..|+.|.+.+.++.+.+|+|..
T Consensus        12 ~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~---~ad~~~~~~~~d~~~l~~~~~~~dvI~~   81 (389)
T 3q2o_A           12 LPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCAQ---VADIEIVASYDDLKAIQHLAEISDVVTY   81 (389)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTTT---TCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchHH---hCCceEecCcCCHHHHHHHHHhCCEeee
Confidence            46789999997 8899999999999999999998765432211   1113456789999999999999998854

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.35  E-value=0.00074  Score=56.86  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=48.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccC-------------------CCCeeEEEccCCCHHHHH
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW-------------------ANNVIWHQGNLLSSDSWK  116 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~Dl~d~~~~~  116 (200)
                      .++|.|+|+ |++|..++..|++.|++|++.++++++......                   ..++.+       ..+++
T Consensus         2 ~mkI~VIG~-G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-------t~d~~   73 (450)
T 3gg2_A            2 SLDIAVVGI-GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-------GTEIE   73 (450)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-------ESCHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-------ECCHH
Confidence            368999997 999999999999999999999998643111000                   011221       12345


Q ss_pred             HHhcCCCEEEEccccC
Q 029008          117 EALDGVTAVISCVGGF  132 (200)
Q Consensus       117 ~~~~~~d~vi~~ag~~  132 (200)
                      ++++++|+||.+.+..
T Consensus        74 ea~~~aDvViiaVptp   89 (450)
T 3gg2_A           74 QAVPEADIIFIAVGTP   89 (450)
T ss_dssp             HHGGGCSEEEECCCCC
T ss_pred             HHHhcCCEEEEEcCCC
Confidence            6778899999998653

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.34  E-value=0.0011  Score=53.76  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCC---CC--cccc----cCC-CCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSG---RS--SLRD----SWA-NNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~---~~--~~~~----~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      |++|.|+||+|++|+.+++.|.+. ..++..+..+.   ..  ....    ... ....+...  .+.+   ++++++|+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~~~~---~~~~~~Dv   78 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--SDIS---EFSPGVDV   78 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--SSGG---GTCTTCSE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEecc--CCHH---HHhcCCCE
Confidence            579999999999999999999985 45777765443   11  1110    111 12233222  0222   23378999


Q ss_pred             EEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          125 VISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ||.|.+..            .+...+..+.+.|+ ++|-.|+
T Consensus        79 vf~a~p~~------------~s~~~~~~~~~~g~-~vIDlSa  107 (337)
T 3dr3_A           79 VFLATAHE------------VSHDLAPQFLEAGC-VVFDLSG  107 (337)
T ss_dssp             EEECSCHH------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             EEECCChH------------HHHHHHHHHHHCCC-EEEEcCC
Confidence            99987642            12344556667776 6777776

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.32  E-value=0.0006  Score=57.57  Aligned_cols=99  Identities=18%  Similarity=0.340  Sum_probs=71.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-ccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~  132 (200)
                      ..++++|.|| |-+|.++++.| +++++|.++.++.++... ....++..++.+|-+|++-+.+. ++.+|++|-+.+. 
T Consensus       234 ~~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~-  310 (461)
T 4g65_A          234 PYRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALTNE-  310 (461)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECCSC-
T ss_pred             cccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcccC-
Confidence            3578999997 99999999997 456899999887655221 11235788999999999988864 6789999886542 


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                            -++|+...+    .|++.|++++|-.-.
T Consensus       311 ------De~Ni~~~l----lAk~~gv~kvIa~vn  334 (461)
T 4g65_A          311 ------DETNIMSAM----LAKRMGAKKVMVLIQ  334 (461)
T ss_dssp             ------HHHHHHHHH----HHHHTTCSEEEEECS
T ss_pred             ------cHHHHHHHH----HHHHcCCcccccccc
Confidence                  134554443    567788888775443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.31  E-value=0.00012  Score=57.81  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ++++|.|+|++|.+|..+++.|.+.|++|++.+|+++....... .++     +..+   ..++++++|+||.+..
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-~g~-----~~~~---~~~~~~~aDvVi~av~   76 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-MGI-----PLTD---GDGWIDEADVVVLALP   76 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-TTC-----CCCC---SSGGGGTCSEEEECSC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-cCC-----CcCC---HHHHhcCCCEEEEcCC
Confidence            45799999999999999999999999999998887543211100 111     1122   2345667898888764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.30  E-value=0.00017  Score=58.24  Aligned_cols=74  Identities=23%  Similarity=0.188  Sum_probs=50.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+|+|+|+ |.+|..+++.+...|++|+++++++++..... .-+... ..|..+.+   .+.++..++|++|+++|.
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~-~~d~~~~~~~~~~~~~~~~~d~vid~~g~  240 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADL-VVNPLKEDAAKFMKEKVGGVHAAVVTAVS  240 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSE-EECTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCE-EecCCCccHHHHHHHHhCCCCEEEECCCC
Confidence            4679999999 78999999999999999999998754421111 112221 23655432   333333579999999884

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.30  E-value=0.00011  Score=59.92  Aligned_cols=71  Identities=23%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC---CCcccccCCCCeeEEEccCCC--HHHHHHHhcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG---RSSLRDSWANNVIWHQGNLLS--SDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~---~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~d~vi~~ag  130 (200)
                      +++|+|+|+ |.+|..+++.+...|++|++++++.   ++. +....-++..+  | .+  .+.+.+.-.++|++|+++|
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~~~ga~~v--~-~~~~~~~~~~~~~~~d~vid~~g  255 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIEETKTNYY--N-SSNGYDKLKDSVGKFDVIIDATG  255 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHHHHTCEEE--E-CTTCSHHHHHHHCCEEEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHHHhCCcee--c-hHHHHHHHHHhCCCCCEEEECCC
Confidence            789999999 9999999999999999999999876   332 11111133433  4 43  2223331257999999998


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus       256 ~  256 (366)
T 2cdc_A          256 A  256 (366)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=97.30  E-value=0.00086  Score=55.53  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=55.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      +++|+|.|+ |.+|+.+++.+.+.|++|++++ ........ .......+.+|..|.+.+.++.+.+|+++.
T Consensus        24 ~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~-~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           24 SRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSPAKQ-ISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCTTGG-GCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCcHHH-hccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            579999997 8999999999999999999999 54332221 122234577899999999999999998875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.29  E-value=5.6e-05  Score=59.43  Aligned_cols=71  Identities=17%  Similarity=0.169  Sum_probs=47.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc--cCC--CCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--SWA--NNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+++++|+|+ |++|++++..|++.|++|++..|+.++..+.  ...  ..+..  .|+   +++.+  .++|+||+++
T Consensus       117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~--~~~---~~~~~--~~~DivIn~t  188 (272)
T 1p77_A          117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA--VSM---DSIPL--QTYDLVINAT  188 (272)
T ss_dssp             CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE--EEG---GGCCC--SCCSEEEECC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE--eeH---HHhcc--CCCCEEEECC
Confidence            46789999998 8999999999999999999999986542110  000  12222  232   11110  3799999998


Q ss_pred             ccC
Q 029008          130 GGF  132 (200)
Q Consensus       130 g~~  132 (200)
                      +..
T Consensus       189 ~~~  191 (272)
T 1p77_A          189 SAG  191 (272)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            753

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.28  E-value=0.00033  Score=56.98  Aligned_cols=75  Identities=21%  Similarity=0.035  Sum_probs=53.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++++.......-+... ..|..+.+.+.++..++|++|.++|.
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~-vi~~~~~~~~~~~~~g~D~vid~~g~  254 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADD-YVIGSDQAKMSELADSLDYVIDTVPV  254 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSC-EEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCce-eeccccHHHHHHhcCCCCEEEECCCC
Confidence            5679999996 999999999998899999999987665221110111211 12555666677666789999999985

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.28  E-value=0.001  Score=51.50  Aligned_cols=72  Identities=24%  Similarity=0.297  Sum_probs=47.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-----CCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d~vi~~ag  130 (200)
                      ++|.|+|++|.+|+.+++.+.+. +++++++........+.. ..... +..|++.++...+.+.     ++++|+-..|
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~-~~~~D-vvIDfT~p~a~~~~~~~a~~~g~~~VigTTG   78 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT-DGNTE-VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG   78 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH-HTTCC-EEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh-ccCCc-EEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence            47999999999999999999876 888887665432211111 11233 3457877766665432     6788877665

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.25  E-value=0.00025  Score=59.41  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ...+.+|+|+||+|.+|...++.+...|++|++++++.++
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~  257 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQK  257 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            3457899999999999999999999999999999876543

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.25  E-value=0.0031  Score=51.75  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             CCCeEEEEccCchhHHHHHH-HHHHCCC---cEEEeecCC-CCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICR-EALDRGL---TVASLSRSG-RSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~-~L~~~g~---~V~~~~r~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..++|.|.||||++|..+++ .|.++.+   ++..+..+. .+...........+.  |+.+++.    ++++|+||.|.
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v~--~~~~~~~----~~~vDvvf~a~   76 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLK--DATSIDD----LKKCDVIITCQ   76 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBCE--ETTCHHH----HHTCSEEEECS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEEE--eCCChhH----hcCCCEEEECC
Confidence            34689999999999999999 6665552   455444322 121111111111221  3333332    46899999998


Q ss_pred             ccCCCCcccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          130 GGFGSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       130 g~~~~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      |..            .+...+..+.+.|++ .+|=.|+
T Consensus        77 ~~~------------~s~~~~~~~~~~G~k~~VID~ss  102 (377)
T 3uw3_A           77 GGD------------YTNDVFPKLRAAGWNGYWIDAAS  102 (377)
T ss_dssp             CHH------------HHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ChH------------HHHHHHHHHHHCCCCEEEEeCCc
Confidence            752            123445556677874 5555554

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.24  E-value=0.0024  Score=51.33  Aligned_cols=102  Identities=14%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc------cc---CCCCeeEEE-ccCCCHHHHHHHhcCCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------DS---WANNVIWHQ-GNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~---~~~~~~~~~-~Dl~d~~~~~~~~~~~d~  124 (200)
                      +++|.|+|+ |.+|..++..|+..|+ +|++++++.+....      ..   ......+.. .|      + +.++++|+
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d------~-~al~~aD~   75 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT------Y-DDLAGADV   75 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECC------G-GGGTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCC------H-HHhCCCCE
Confidence            468999998 9999999999999998 88888887643210      00   011222221 22      3 45889999


Q ss_pred             EEEccccCCCC---------cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          125 VISCVGGFGSN---------SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       125 vi~~ag~~~~~---------~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      ||.++|....+         ......|..-...+++.+.+...+ .+|.+|
T Consensus        76 Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  126 (322)
T 1t2d_A           76 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  126 (322)
T ss_dssp             EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            99999864322         223445656666677777666544 344444

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.23  E-value=0.00065  Score=55.98  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=50.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCC----------------------CH
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLL----------------------SS  112 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~----------------------d~  112 (200)
                      .+++|+|+|+ |.+|..+++.+...|.+|++.+++..+...... -+.+++..|..                      +.
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~-~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH-TTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            5789999997 999999999999999999999988665221111 12222211211                      13


Q ss_pred             HHHHHHhcCCCEEEEcc
Q 029008          113 DSWKEALDGVTAVISCV  129 (200)
Q Consensus       113 ~~~~~~~~~~d~vi~~a  129 (200)
                      +.+.+.+.++|+||+++
T Consensus       249 ~~l~~~~~~aDvVi~~~  265 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTA  265 (384)
T ss_dssp             HHHHHHHTTCSEEEECC
T ss_pred             HHHHHHhCCCCEEEECC
Confidence            34777888999999988

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.22  E-value=0.0015  Score=52.47  Aligned_cols=103  Identities=11%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------c---cCCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D---SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~---~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      +++|.|+|+ |.+|..++..|+.+|.  +|.+++.+.++...      .   .....+.+.. |  +    .++++++|+
T Consensus         6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~aDv   77 (317)
T 3d0o_A            6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDADL   77 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCCCE
Confidence            469999998 9999999999998884  88888876432110      0   1112333332 2  2    345889999


Q ss_pred             EEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ||.++|....+    ...+..|..-...+.+.+.+.+.+-+|.+.|
T Consensus        78 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           78 VVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            99999865432    2345667777777788877776554444443

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.22  E-value=0.00038  Score=56.63  Aligned_cols=74  Identities=20%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH-HHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS-DSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++++...... -+...+ .|..+. +..+++..++|++|.++|.
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-lGa~~v-~~~~~~~~~~~~~~~~~D~vid~~g~  253 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MGADHY-IATLEEGDWGEKYFDTFDLIVVCASS  253 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCSEE-EEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCCCEE-EcCcCchHHHHHhhcCCCEEEECCCC
Confidence            5679999999 999999999999899999999987665321111 112211 244443 3334444589999999886

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.21  E-value=0.00093  Score=54.40  Aligned_cols=91  Identities=16%  Similarity=0.209  Sum_probs=55.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEee--cC-CCCcccc--cCC---------CCeeEEEccCCCHHHHHHHhc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLS--RS-GRSSLRD--SWA---------NNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~--r~-~~~~~~~--~~~---------~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      +.+|.|.||+|++|+.+++.|.+... +++.+.  ++ ..+....  .+.         ..+.+  .|+ |++.    ++
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-d~~~----~~   76 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPI--VST-NYED----HK   76 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBE--ECS-SGGG----GT
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEE--eeC-CHHH----hc
Confidence            46899999999999999999987653 777774  22 1111110  000         11222  232 3332    36


Q ss_pred             CCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       121 ~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ++|+||.|.+..            ....++..+.+.|+ ++|-.|+
T Consensus        77 ~vDvVf~atp~~------------~s~~~a~~~~~aG~-~VId~s~  109 (350)
T 2ep5_A           77 DVDVVLSALPNE------------LAESIELELVKNGK-IVVSNAS  109 (350)
T ss_dssp             TCSEEEECCCHH------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             CCCEEEECCChH------------HHHHHHHHHHHCCC-EEEECCc
Confidence            899999987652            13455677777787 4666665

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.21  E-value=0.00024  Score=57.54  Aligned_cols=75  Identities=21%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCC--HHHHHHHh-cCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEAL-DGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~-~~~d~vi~~ag~  131 (200)
                      .+.+|+|+||+|.+|...++.+...|++|+++++++++.........-.++  |..+  .+.+.+.- .++|++|.|+|.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~~~~~~~g~Dvv~d~~g~  227 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVL--NHKESLLNQFKTQGIELVDYVFCTFNT  227 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEE--CTTSCHHHHHHHHTCCCEEEEEESSCH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEE--ECCccHHHHHHHhCCCCccEEEECCCc
Confidence            567999999999999999999999999999998865442111101111222  3322  23333331 258999999875

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.21  E-value=0.0015  Score=52.38  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      ++|.|+|+ |.+|..++..|+..+.  ++.+++++.++...      ..  ....+.+.. |  +    .+.++++|+||
T Consensus         6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDvVi   77 (318)
T 1ez4_A            6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKDADLVV   77 (318)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCEEE
Confidence            69999998 9999999999998876  89999886432110      00  113344433 2  2    34588999999


Q ss_pred             EccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       127 ~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      .++|....+    ...+..|..-...+++.+.+.+.+ .++.+|
T Consensus        78 i~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  121 (318)
T 1ez4_A           78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (318)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            999864322    345677878788888888877655 444443

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.20  E-value=0.0031  Score=50.82  Aligned_cols=102  Identities=17%  Similarity=0.159  Sum_probs=65.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc------cc-----CCCCeeEEEccCCCHHHHHHHhcCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------DS-----WANNVIWHQGNLLSSDSWKEALDGV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~  122 (200)
                      ++++|.|+|| |.+|..++..|+..|+ +|++.+++.+....      ..     ...++... .|      + +.++++
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d------~-~al~~a   83 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NN------Y-EYLQNS   83 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SC------G-GGGTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CC------H-HHHCCC
Confidence            3469999998 9999999999999998 99999988654211      00     01122221 22      3 457899


Q ss_pred             CEEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 029008          123 TAVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (200)
Q Consensus       123 d~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~-~v~vS  165 (200)
                      |+||.++|....+    ......|..-...+++.+.+...+- ++++|
T Consensus        84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  131 (328)
T 2hjr_A           84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT  131 (328)
T ss_dssp             SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999999754322    2234456666666777776665443 44444

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.20  E-value=0.0004  Score=56.84  Aligned_cols=74  Identities=19%  Similarity=0.123  Sum_probs=52.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++++...... -+... ..|..+.+.++++..++|++|.++|.
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-lGa~~-vi~~~~~~~~~~~~~g~Dvvid~~g~  267 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LGADE-VVNSRNADEMAAHLKSFDFILNTVAA  267 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HTCSE-EEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCcE-EeccccHHHHHHhhcCCCEEEECCCC
Confidence            5679999998 889999999999999999999987654221111 11221 13566666555555689999999885

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.18  E-value=0.0045  Score=49.88  Aligned_cols=104  Identities=13%  Similarity=0.026  Sum_probs=70.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------cc--cCCCCeeEE-EccCCCHHHHHHHhcCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD--SWANNVIWH-QGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~--~~~~~~~~~-~~Dl~d~~~~~~~~~~~d  123 (200)
                      ..++|.|+|+ |.+|..++..|+..|.  +|++++.+.+...      ..  .......+. ..|+      + .++++|
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~------~-~~~daD   91 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY------S-VSAGSK   91 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS------C-SCSSCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH------H-HhCCCC
Confidence            4579999998 9999999999999986  8999988653211      00  111112222 2332      2 278999


Q ss_pred             EEEEccccCCC----CcccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                      +||-++|....    ....+..|..-...+++.+.+.+.+ .++.+|.
T Consensus        92 iVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           92 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             EEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            99999996442    2456788888888888888877655 4555553

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.18  E-value=0.00023  Score=57.69  Aligned_cols=74  Identities=19%  Similarity=0.154  Sum_probs=49.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHhc--CCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~--~~d~vi~~  128 (200)
                      .+.+|+|+|+ |.+|..+++.+...|+ +|+++++++++..... .-++..+ .|..+.+   .+.++..  ++|++|.+
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~Ga~~~-~~~~~~~~~~~v~~~~~g~g~D~vid~  243 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KVGADYV-INPFEEDVVKEVMDITDGNGVDVFLEF  243 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HHTCSEE-ECTTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEE-ECCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence            6779999999 9999999999999999 9999998754421111 1112211 2554432   2333332  68999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       244 ~g~  246 (348)
T 2d8a_A          244 SGA  246 (348)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            884

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.15  E-value=0.0039  Score=51.05  Aligned_cols=69  Identities=22%  Similarity=0.336  Sum_probs=40.4

Q ss_pred             CeEEEEccCchhHHHHHH-HHHHCCC---cEEEee-cCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICR-EALDRGL---TVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~-~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ++|.|.||||++|..+++ .|.++.+   ++..+. ++..+...........+.  |..+++    .++++|++|.|.|.
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~--~~~~~~----~~~~~Dvvf~a~~~   74 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLH--DAFDIE----SLKQLDAVITCQGG   74 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCE--ETTCHH----HHTTCSEEEECSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEE--ecCChh----HhccCCEEEECCCh
Confidence            479999999999999999 6666553   555443 332221111111112222  333333    25789999999874

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.15  E-value=0.00047  Score=53.60  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=49.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .+ +++|+|+ |+.|++++..|.+.|. +|++..|+.++..+.  ...+...  +   .+++.+.++++|+||++..
T Consensus       108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l--a~~~~~~--~---~~~~~~~~~~aDiVInatp  175 (253)
T 3u62_A          108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKAL--DFPVKIF--S---LDQLDEVVKKAKSLFNTTS  175 (253)
T ss_dssp             CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC--CSSCEEE--E---GGGHHHHHHTCSEEEECSS
T ss_pred             CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH--HHHcccC--C---HHHHHhhhcCCCEEEECCC
Confidence            56 9999997 9999999999999998 899999986542211  1122222  1   2446677889999999864

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.15  E-value=0.00025  Score=56.80  Aligned_cols=75  Identities=25%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+.+|+|+||+|.+|...++.+...|++|+++++..+.  +....-++.. ..|..+.+.+.+.+.++|++|.+.|.
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~--~~~~~lGa~~-~i~~~~~~~~~~~~~g~D~v~d~~g~  225 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNH--AFLKALGAEQ-CINYHEEDFLLAISTPVDAVIDLVGG  225 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHH--HHHHHHTCSE-EEETTTSCHHHHCCSCEEEEEESSCH
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchH--HHHHHcCCCE-EEeCCCcchhhhhccCCCEEEECCCc
Confidence            356799999999999999999999999999988754321  1111112221 23555555466667899999999884

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=97.14  E-value=0.0027  Score=51.49  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=52.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccC-CCHHHHHHHhcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNL-LSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl-~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ||+|+|+|+ |..|..++..+.+.|++|++++.+++...... .  -+++..|. .|.+.+....+++|+|+-..+
T Consensus         1 MK~I~ilGg-g~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~-a--D~~~~~~~~~d~~~~~~~~~~~D~v~~~~~   72 (363)
T 4ffl_A            1 MKTICLVGG-KLQGFEAAYLSKKAGMKVVLVDKNPQALIRNY-A--DEFYCFDVIKEPEKLLELSKRVDAVLPVNE   72 (363)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTTTT-S--SEEEECCTTTCHHHHHHHHTSSSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCChhHhh-C--CEEEECCCCcCHHHHHHHhcCCCEEEECCC
Confidence            689999996 89999999999999999999988765432211 1  13455565 466777777789999876543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=97.14  E-value=0.0031  Score=50.56  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...++++.|+|. |.||+.+++.|...|++|++.+|+....      ..+....    ..++++++++++|+|+.+...
T Consensus       136 ~l~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~~------~~~~~~~----~~~~l~ell~~aDiV~l~~Pl  203 (315)
T 3pp8_A          136 TREEFSVGIMGA-GVLGAKVAESLQAWGFPLRCWSRSRKSW------PGVESYV----GREELRAFLNQTRVLINLLPN  203 (315)
T ss_dssp             CSTTCCEEEECC-SHHHHHHHHHHHTTTCCEEEEESSCCCC------TTCEEEE----SHHHHHHHHHTCSEEEECCCC
T ss_pred             CcCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCchhh------hhhhhhc----ccCCHHHHHhhCCEEEEecCC
Confidence            356889999997 9999999999999999999999876532      1222221    236788999999999988654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.14  E-value=0.00066  Score=54.80  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHh-cCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEAL-DGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~-~~~d~vi~~a  129 (200)
                      .+.+|+|+|+ |.+|...++.+...|+ +|+++++++++.......  ... ..|..+.+   .+.++. .++|++|.++
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a~~-v~~~~~~~~~~~~~~~~~~g~D~vid~~  239 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--ADR-LVNPLEEDLLEVVRRVTGSGVEVLLEFS  239 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--CSE-EECTTTSCHHHHHHHHHSSCEEEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--HHh-ccCcCccCHHHHHHHhcCCCCCEEEECC
Confidence            6789999999 9999999999999999 999999875442111111  111 13554432   222222 3689999998


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       240 g~  241 (343)
T 2dq4_A          240 GN  241 (343)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.13  E-value=0.0017  Score=51.08  Aligned_cols=57  Identities=16%  Similarity=0.222  Sum_probs=47.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+++++|+|+++.+|+.++..|+..|+.|+++.++.                      .++++.++.+|+||...|.
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t----------------------~~L~~~~~~ADIVI~Avg~  213 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT----------------------KDLSLYTRQADLIIVAAGC  213 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------SCHHHHHTTCSEEEECSSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc----------------------hhHHHHhhcCCEEEECCCC
Confidence            45789999999989999999999999999999886542                      1356778889999998874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.12  E-value=0.0002  Score=59.42  Aligned_cols=73  Identities=19%  Similarity=0.230  Sum_probs=51.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+++|+|+|+ |.+|..+++.|...|. +|++.+|+.++..+....-++.++     +.+++.+.+.++|+||.+.+..
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~l~~~l~~aDvVi~at~~~  238 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAV-----RFDELVDHLARSDVVVSATAAP  238 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEEC-----CGGGHHHHHHTCSEEEECCSSS
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCcee-----cHHhHHHHhcCCCEEEEccCCC
Confidence            46789999998 9999999999999998 899999876442110000022221     2345677778999999997643

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.12  E-value=0.0015  Score=52.39  Aligned_cols=80  Identities=20%  Similarity=0.103  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc--cCCCCee-EEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--SWANNVI-WHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~-~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ...+++++|+|++.-+|+.+++.|+..|..|++++|+..+....  ....... ......++++++.+.+.++|+||.+.
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt  253 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV  253 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC
Confidence            46789999999977889999999999999999998873321110  0011111 11111134578899999999999998


Q ss_pred             ccC
Q 029008          130 GGF  132 (200)
Q Consensus       130 g~~  132 (200)
                      |..
T Consensus       254 g~p  256 (320)
T 1edz_A          254 PSE  256 (320)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            853

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.11  E-value=0.00017  Score=57.28  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=31.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      +++|.|+|+ |.+|..++..|.+.|++|++.+|+++
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~   37 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWPA   37 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            468999997 99999999999999999999998754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.11  E-value=0.00068  Score=53.17  Aligned_cols=65  Identities=20%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +++++|+|+ |+.|++++..|.+.|.+|++..|+.++..+.. .-++.+.  ++.+.       .++|+||++...
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~~~--~~~~l-------~~~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCDCF--MEPPK-------SAFDLIINATSA  182 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCEEE--SSCCS-------SCCSEEEECCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEe--cHHHh-------ccCCEEEEcccC
Confidence            789999997 99999999999999999999999877632211 1122332  22221       279999998653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.11  E-value=0.0032  Score=50.43  Aligned_cols=102  Identities=13%  Similarity=0.245  Sum_probs=66.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------c---cCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D---SWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~---~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      ++++|.|+|+ |.+|..++..|+..|.  +|++++++.+....      .   .....+.+.. |  +    .+.++++|
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~al~~aD   76 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D----YDDCRDAD   76 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C----GGGTTTCS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c----HHHhCCCC
Confidence            3569999998 9999999999988774  89999987542110      0   0111334332 2  2    24588999


Q ss_pred             EEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEE
Q 029008          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYI  164 (200)
Q Consensus       124 ~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~v  164 (200)
                      +||.+++....+    ...+..|..-...+++.+.+...+-++++
T Consensus        77 vViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv  121 (316)
T 1ldn_A           77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLV  121 (316)
T ss_dssp             EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             EEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEE
Confidence            999999864322    23455666666677777777655433333

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.11  E-value=0.00045  Score=55.19  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ..+++|.|+|. |.+|..+++.|++.|++|++.+|+++.
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~   56 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSK   56 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            45689999996 999999999999999999999988654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.10  E-value=0.00056  Score=54.82  Aligned_cols=72  Identities=21%  Similarity=0.094  Sum_probs=46.3

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH--HHHHHHh-cCCCEEEEcccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS--DSWKEAL-DGVTAVISCVGG  131 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~-~~~d~vi~~ag~  131 (200)
                      +|+|+|++|.+|...++.+...|++|+++++++++...... -+...+ .|..+.  +.+.++. .++|++|.++|.
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-lGa~~~-i~~~~~~~~~~~~~~~~~~d~vid~~g~  226 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-LGAKEV-LAREDVMAERIRPLDKQRWAAAVDPVGG  226 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-TTCSEE-EECC---------CCSCCEEEEEECSTT
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-cCCcEE-EecCCcHHHHHHHhcCCcccEEEECCcH
Confidence            79999999999999999999999999999988655221111 122211 244443  1222222 258999999885

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.10  E-value=0.0021  Score=51.79  Aligned_cols=103  Identities=12%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      +.++|.|+|+ |.+|..++..|+..+.  ++.+++++.++...      ..  ....+.+.. |  +    .+.++++|+
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~~~aDv   79 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--E----YSDAKDADL   79 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGGGCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCE
Confidence            3469999998 9999999999988875  78998886432110      00  112334433 2  2    345889999


Q ss_pred             EEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       125 vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      ||..+|....+    ...+..|+.-...+++.+.+.+.+ .++.+|
T Consensus        80 Vii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  125 (326)
T 2zqz_A           80 VVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             EEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            99999864432    234566777777778887777654 444444

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.09  E-value=0.00094  Score=52.83  Aligned_cols=74  Identities=19%  Similarity=0.222  Sum_probs=42.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC-CCcEEEe-ecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ++.+|.|.|++|.+|+.+++.+.+. +.+++++ +++.+....  .....++.  ..++.-.+++++++.++|++|.+..
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~--~~gv~v~~dl~~ll~~aDVvIDFT~   97 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD--FLGVRITDDPESAFSNTEGILDFSQ   97 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS--CCSCBCBSCHHHHTTSCSEEEECSC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC--cCCceeeCCHHHHhcCCCEEEEcCC
Confidence            4569999999999999999998865 5676655 454322100  00000000  0111112345667778888887653

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.08  E-value=0.00062  Score=55.05  Aligned_cols=73  Identities=26%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH---HHHHHHhc--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEALD--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~--~~d~vi~~  128 (200)
                      ..+.+|+|+||+|.+|...++.+...|++|+++ ++.++. +....-+...  .| .+.   +.+.+...  ++|++|.+
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~-~~~~~lGa~~--i~-~~~~~~~~~~~~~~~~g~D~vid~  223 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDL-EYVRDLGATP--ID-ASREPEDYAAEHTAGQGFDLVYDT  223 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHH-HHHHHHTSEE--EE-TTSCHHHHHHHHHTTSCEEEEEES
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHH-HHHHHcCCCE--ec-cCCCHHHHHHHHhcCCCceEEEEC
Confidence            357899999999999999999999999999988 554331 1111112333  33 222   23333333  68999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      +|.
T Consensus       224 ~g~  226 (343)
T 3gaz_A          224 LGG  226 (343)
T ss_dssp             SCT
T ss_pred             CCc
Confidence            884

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.08  E-value=0.00043  Score=58.00  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      |+|.|+|+ |++|..++..|++.|++|++++|++++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~~V~~~d~~~~~   35 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTK   35 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47999995 999999999999999999999987543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.07  E-value=0.00071  Score=53.75  Aligned_cols=72  Identities=22%  Similarity=0.243  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+++++|+|+ |.+|+.+++.|...|.+|++.+|+.++..... ..+++.+.     .++++++++++|+|+.+...
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~~-----~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARIT-EMGLVPFH-----TDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCEEEE-----GGGHHHHSTTCSEEEECCSS
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCCeEEc-----hhhHHHHhhCCCEEEECCCh
Confidence            356889999997 99999999999999999999998754321100 11233321     34577888999999998764

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.07  E-value=0.0018  Score=51.31  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH--HHhcCCCEEEEccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK--EALDGVTAVISCVG  130 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~--~~~~~~d~vi~~ag  130 (200)
                      ...+++++|+|+++-+|+.++..|+..|+.|+++.|+..                      +++  +.++.+|+||...|
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~----------------------~l~l~~~~~~ADIVI~Avg  219 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS----------------------TEDMIDYLRTADIVIAAMG  219 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC----------------------HHHHHHHHHTCSEEEECSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC----------------------CchhhhhhccCCEEEECCC
Confidence            357899999999888999999999999999999876421                      234  77889999999988


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus       220 ~  220 (300)
T 4a26_A          220 Q  220 (300)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=97.06  E-value=0.0041  Score=50.84  Aligned_cols=72  Identities=18%  Similarity=0.347  Sum_probs=54.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a  129 (200)
                      .++++|+|+|+ |.+|..+++.+.+.|++|++++..+.......   .-.++..|..|.+.+.++.+  ++|+|+...
T Consensus         9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~---~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~   82 (391)
T 1kjq_A            9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAMHV---AHRSHVINMLDGDALRRVVELEKPHYIVPEI   82 (391)
T ss_dssp             TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGGGG---SSEEEECCTTCHHHHHHHHHHHCCSEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCchhhh---ccceEECCCCCHHHHHHHHHHcCCCEEEECC
Confidence            45689999997 78999999999999999999987654422111   11356678888888888775  799998744

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.06  E-value=0.00098  Score=54.00  Aligned_cols=73  Identities=23%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-ccCCCCeeEEEccCCC----HHHHHHHh-----cCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLS----SDSWKEAL-----DGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d----~~~~~~~~-----~~~d~  124 (200)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++++... ...... .++  |..+    .+.+.+..     .++|+
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~~~--~~~~~~~~~~~i~~~~~~~~g~g~D~  243 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-VTL--VVDPAKEEESSIIERIRSAIGDLPNV  243 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-EEE--ECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-EEE--cCcccccHHHHHHHHhccccCCCCCE
Confidence            4679999997 999999999999999999988877544211 111111 222  4432    34455544     36999


Q ss_pred             EEEcccc
Q 029008          125 VISCVGG  131 (200)
Q Consensus       125 vi~~ag~  131 (200)
                      +|.++|.
T Consensus       244 vid~~g~  250 (352)
T 1e3j_A          244 TIDCSGN  250 (352)
T ss_dssp             EEECSCC
T ss_pred             EEECCCC
Confidence            9999875

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.06  E-value=0.004  Score=49.80  Aligned_cols=101  Identities=18%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccc------c-----CCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD------S-----WANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~------~-----~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      +++|.|+|+ |.+|..++..|+..|+ +|++.+++.+.....      .     ...++... .|      + +.++++|
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d------~-~a~~~aD   74 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-DD------Y-ADISGSD   74 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SC------G-GGGTTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-CC------H-HHhCCCC
Confidence            468999998 9999999999999998 999999876432110      0     01122211 12      2 3578999


Q ss_pred             EEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 029008          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (200)
Q Consensus       124 ~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~-~v~vS  165 (200)
                      +||.++|....+    ......|......+++.+.+...+. ++.+|
T Consensus        75 iVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~s  121 (317)
T 2ewd_A           75 VVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT  121 (317)
T ss_dssp             EEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            999999854322    1223344555555666665554443 44444

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.05  E-value=0.00044  Score=58.19  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ..+.+|+|+|++|.+|...++.+...|++|+++++++++
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~  265 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQK  265 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            456799999999999999999999999999998876443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.05  E-value=0.00073  Score=53.52  Aligned_cols=71  Identities=20%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ...+++++|+|+ |.+|+.+++.|...|.+|++.+|+.++..... ..++.++     +.++++++++++|+|+.+..
T Consensus       152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~-----~~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGMEPF-----HISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSEEE-----EGGGHHHHTTTCSEEEECCS
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCeec-----ChhhHHHHhcCCCEEEECCC
Confidence            356889999996 99999999999999999999998754321110 1123332     23457788899999999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.05  E-value=0.00049  Score=56.54  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=53.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccC------------------CCHHHHH
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNL------------------LSSDSWK  116 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl------------------~d~~~~~  116 (200)
                      .+.+|+|+|+ |.+|..+++.+...|.+|++.+|+..+..... .-+.+++..|+                  .+.+.+.
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR-SVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH-HTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            4579999998 99999999999999999999999876522111 12334433221                  1245677


Q ss_pred             HHhcCCCEEEEcccc
Q 029008          117 EALDGVTAVISCVGG  131 (200)
Q Consensus       117 ~~~~~~d~vi~~ag~  131 (200)
                      +.++++|+||.++..
T Consensus       261 e~l~~aDIVI~tv~i  275 (381)
T 3p2y_A          261 DAITKFDIVITTALV  275 (381)
T ss_dssp             HHHTTCSEEEECCCC
T ss_pred             HHHhcCCEEEECCCC
Confidence            888999999998743

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.05  E-value=0.00061  Score=55.13  Aligned_cols=71  Identities=21%  Similarity=0.175  Sum_probs=49.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+.+|+|+|+ |.+|...++.+...|++|+++++++++...... -+...+.   .+++.+.+   ++|++|.++|..
T Consensus       175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~v~---~~~~~~~~---~~D~vid~~g~~  245 (348)
T 3two_A          175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS-MGVKHFY---TDPKQCKE---ELDFIISTIPTH  245 (348)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH-TTCSEEE---SSGGGCCS---CEEEEEECCCSC
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh-cCCCeec---CCHHHHhc---CCCEEEECCCcH
Confidence            35779999997 999999999999999999999988765322111 1222221   34443322   899999998853

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.04  E-value=0.0027  Score=50.73  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      ++|.|+|+ |.+|..++..|+..+  .++.+++++.++...      ..  ....+.+.. +  +    .+.++++|+||
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD~Vi   72 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGARAVV   72 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTEEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCCCEEE
Confidence            58999998 999999999999887  589999987533110      00  012334433 2  2    34588999999


Q ss_pred             EccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       127 ~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      ..+|....+    ...+..|..-...+.+.+.+.+.+ .++.+|
T Consensus        73 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  116 (310)
T 2xxj_A           73 LAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT  116 (310)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             ECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            999865432    234566777777778887777655 444444

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.03  E-value=0.00026  Score=55.66  Aligned_cols=70  Identities=17%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|+|+ |.+|+.++..|.+.|++|++.+|+.++.......-++.+     .+  ++.+.++++|+||++...
T Consensus       127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~-----~~--~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          127 VKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEV-----VN--SPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEE-----CS--CGGGTGGGCSEEEECSST
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCee-----eh--hHHhhhcCCCEEEEeCCC
Confidence            35689999997 899999999999999999998887543211111112222     11  234566789999999764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.03  E-value=0.001  Score=50.75  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=52.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-CCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++|+|+|| |-+|...++.|++.|++|++++.......... ...+++++..++.+     ..++++|.||-+.+
T Consensus        29 L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~-----~dL~~adLVIaAT~  100 (223)
T 3dfz_A           29 LKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGE-----EDLLNVFFIVVATN  100 (223)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCG-----GGSSSCSEEEECCC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCH-----hHhCCCCEEEECCC
Confidence            46889999998 99999999999999999999987654322211 13467777766642     23678999986543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.02  E-value=0.0024  Score=45.19  Aligned_cols=85  Identities=15%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             CCeEEEEccC---chhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           56 SEKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      .++|.|+|++   |.+|..+++.|.+.|++|+.+...  .. + .  .++.++       .++.++-+.+|+++-+... 
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~--~~-~-i--~G~~~y-------~sl~~l~~~vDlvvi~vp~-   87 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK--YE-E-V--LGRKCY-------PSVLDIPDKIEVVDLFVKP-   87 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT--CS-E-E--TTEECB-------SSGGGCSSCCSEEEECSCH-
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCC--CC-e-E--CCeecc-------CCHHHcCCCCCEEEEEeCH-
Confidence            5789999998   899999999999999987655332  21 1 0  122221       1122333468888876432 


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                                 .....+++.|.+.|++.+++.+
T Consensus        88 -----------~~~~~vv~~~~~~gi~~i~~~~  109 (144)
T 2d59_A           88 -----------KLTMEYVEQAIKKGAKVVWFQY  109 (144)
T ss_dssp             -----------HHHHHHHHHHHHHTCSEEEECT
T ss_pred             -----------HHHHHHHHHHHHcCCCEEEECC
Confidence                       2234566777778887665443

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.02  E-value=0.0046  Score=50.68  Aligned_cols=108  Identities=14%  Similarity=0.089  Sum_probs=67.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--c---EEEeecCCCCc----------ccccCCCCeeEEEccCCCHHHHHHHh
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--T---VASLSRSGRSS----------LRDSWANNVIWHQGNLLSSDSWKEAL  119 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~---V~~~~r~~~~~----------~~~~~~~~~~~~~~Dl~d~~~~~~~~  119 (200)
                      ...+|.|+||+|.+|.+++-.|+..+.  +   +.+.+.+.+..          ..+....-..-+  .+.+  .-.+.+
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v--~i~~--~~y~~~  106 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREV--SIGI--DPYEVF  106 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEE--EEES--CHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCc--EEec--CCHHHh
Confidence            456999999999999999999998864  2   65544332221          001111111111  1111  135788


Q ss_pred             cCCCEEEEccccCCCC----cccchhhHHHHHHHHHHHHHc-CCC-EEEEEec
Q 029008          120 DGVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEK-GVK-RFVYISA  166 (200)
Q Consensus       120 ~~~d~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~-~~~-~~v~vSS  166 (200)
                      +++|+||.++|....+    ...++.|..-...+.+.+.+. +.+ .++.+|.
T Consensus       107 ~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN  159 (375)
T 7mdh_A          107 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  159 (375)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            9999999999864422    456788888888888888764 443 5555554

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.02  E-value=0.00081  Score=53.67  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcccc---------cCCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRD---------SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      |++|.|+| +|.+|..++..|+..|  ++|++.+++.+.....         .....+.+...|   .    +.++++|+
T Consensus         1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d---~----~~~~~aDv   72 (309)
T 1hyh_A            1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---W----AALADADV   72 (309)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---G----GGGTTCSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCC---H----HHhCCCCE
Confidence            36899999 5999999999999999  7999999875431110         001123332222   2    35778999


Q ss_pred             EEEccccCCC----C----cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          125 VISCVGGFGS----N----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       125 vi~~ag~~~~----~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      ||.+++....    +    ...+..|..-...+++.+.+...+ .+|.+|
T Consensus        73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t  122 (309)
T 1hyh_A           73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (309)
T ss_dssp             EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            9999876332    1    223455666666777777665544 344443

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.99  E-value=0.0037  Score=50.31  Aligned_cols=68  Identities=25%  Similarity=0.355  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...++++.|+|. |.||+.+++.|...|.+|++.+|+......      +...    ....+++++++++|+|+.+...
T Consensus       137 ~l~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~~~~----~~~~~l~ell~~aDvV~l~lPl  204 (324)
T 3hg7_A          137 GLKGRTLLILGT-GSIGQHIAHTGKHFGMKVLGVSRSGRERAG------FDQV----YQLPALNKMLAQADVIVSVLPA  204 (324)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCTT------CSEE----ECGGGHHHHHHTCSEEEECCCC
T ss_pred             ccccceEEEEEE-CHHHHHHHHHHHhCCCEEEEEcCChHHhhh------hhcc----cccCCHHHHHhhCCEEEEeCCC
Confidence            356889999997 999999999999999999999887633211      1111    1245678899999999998764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.0012  Score=54.73  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEcc----------------CCC------H
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGN----------------LLS------S  112 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D----------------l~d------~  112 (200)
                      .+.+|+|+|+ |-+|...++.+...|++|++.+++..+..... .-+..++..+                +++      .
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA-SLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH-HTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            3569999998 99999999999999999999999876521111 1122332222                222      3


Q ss_pred             HHHHHHhcCCCEEEEccccC
Q 029008          113 DSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus       113 ~~~~~~~~~~d~vi~~ag~~  132 (200)
                      +.+.++++++|+||.++...
T Consensus       267 ~~l~e~l~~aDVVI~tvlip  286 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIP  286 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCS
T ss_pred             hHHHHHhcCCCEEEECCcCC
Confidence            57788889999999987643

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.98  E-value=0.00043  Score=52.48  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEE-eecCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVAS-LSRSGRS   92 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~-~~r~~~~   92 (200)
                      +++|.|+| +|.+|..+++.|.+.|++|++ .+|++++
T Consensus        23 mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~   59 (220)
T 4huj_A           23 MTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPAS   59 (220)
T ss_dssp             SCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGG
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHH
Confidence            57999999 499999999999999999998 7777554

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.98  E-value=0.0029  Score=49.78  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+++++|+|+++-+|+.++..|+..|+.|+++.++.                      .++++.++.+|+||...|.
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t----------------------~~L~~~~~~ADIVI~Avg~  214 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT----------------------TDLKSHTTKADILIVAVGK  214 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------SSHHHHHTTCSEEEECCCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----------------------hhHHHhcccCCEEEECCCC
Confidence            35789999999988899999999999999998876541                      1356778899999998874

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.97  E-value=0.0038  Score=49.72  Aligned_cols=100  Identities=15%  Similarity=0.111  Sum_probs=62.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------ccc--CCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RDS--WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      +++|.|+|+ |.+|..++..|+..|+  +|++++|+.+...      ...  ......+...  .+.    +.++++|+|
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~aD~V   79 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRDADMV   79 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHhCCCCEE
Confidence            469999998 9999999999999998  9999998753311      000  0012222221  122    246789999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEE
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFV  162 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v  162 (200)
                      |.+++....+    ...+..|......+++.+.+.+.+.+|
T Consensus        80 ii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~v  120 (319)
T 1lld_A           80 VITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIY  120 (319)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            9999754322    223445555555666666655444333

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.96  E-value=0.00044  Score=55.29  Aligned_cols=102  Identities=12%  Similarity=0.025  Sum_probs=65.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC--CCcEEEeecCCCCcccc----cC-----CCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRD----SW-----ANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~----~~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      ++|.|+|+ |.+|..++..|+..  |++|++++++++.....    ..     .....+...  +|.   ++ ++++|+|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~---~~-l~~aDvV   73 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY---AD-TANSDIV   73 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG---GG-GTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC--CCH---HH-HCCCCEE
Confidence            47999998 99999999999985  78999999986532110    00     011122110  222   23 7899999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      |.+++....+    ...+..|..-...+++.+.+.+.+ .++.++
T Consensus        74 iiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t  118 (310)
T 1guz_A           74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (310)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            9999854322    234456667777777777766544 445554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.96  E-value=0.00087  Score=55.58  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCC-------------CH-------HH
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLL-------------SS-------DS  114 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~-------------d~-------~~  114 (200)
                      .+++|+|+|+ |.+|..+++.+...|.+|++.+++..+..... .-+.+++..|..             +.       +.
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~-~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          171 PPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH-HTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            4679999997 99999999999999999999998865422111 113333322221             11       14


Q ss_pred             HHHHhcCCCEEEEcccc
Q 029008          115 WKEALDGVTAVISCVGG  131 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~  131 (200)
                      +.+.+.++|+||.+++.
T Consensus       249 l~e~~~~aDvVI~~~~~  265 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALI  265 (401)
T ss_dssp             HHHHHHHCSEEEECCCC
T ss_pred             HHHHhCCCCEEEECCcc
Confidence            66777789999999643

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.96  E-value=0.00097  Score=53.53  Aligned_cols=101  Identities=17%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccccc--------CCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDS--------WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--------~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      ++|.|+|+ |.+|..++..|+..|+  +|++.+++++......        ......+..   +|.    +.++++|+||
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d~----~~~~~aDvVi   72 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GDY----ADLKGSDVVI   72 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CCG----GGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CCH----HHhCCCCEEE
Confidence            47999998 9999999999999998  9999998754311100        001122222   232    2468999999


Q ss_pred             EccccCCCC----cccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 029008          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (200)
Q Consensus       127 ~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vS  165 (200)
                      .+++....+    ......|..-...+++.+.+...+ .+|.+|
T Consensus        73 iav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t  116 (319)
T 1a5z_A           73 VAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (319)
T ss_dssp             ECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            999864422    223445555566667777665444 344444

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.95  E-value=0.0016  Score=51.56  Aligned_cols=65  Identities=20%  Similarity=0.151  Sum_probs=50.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..++++.|+|. |.||+.+++.|...|++|++.+|+......      +.       ..++++++++++|+|+.+....
T Consensus       120 l~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~~-------~~~~l~ell~~aDiV~l~~P~t  184 (290)
T 3gvx_A          120 LYGKALGILGY-GGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------DV-------ISESPADLFRQSDFVLIAIPLT  184 (290)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSCCCTTC------SE-------ECSSHHHHHHHCSEEEECCCCC
T ss_pred             eecchheeecc-CchhHHHHHHHHhhCcEEEEEecccccccc------cc-------ccCChHHHhhccCeEEEEeecc
Confidence            56889999997 999999999999999999999987654211      11       1234677888899999987643

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.95  E-value=0.0018  Score=48.65  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=31.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      ..+++|.|+|+ |.+|..++..|.+.|++|++.+|+++
T Consensus        17 ~~~~~I~iiG~-G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           17 FQGMEITIFGK-GNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35679999995 99999999999999999999988754

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.94  E-value=0.0005  Score=54.16  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=32.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ++|.|+|. |.+|..+++.|.+.|++|++.+|++++
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~   36 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEK   36 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence            68999996 999999999999999999999988655

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.94  E-value=0.0013  Score=55.22  Aligned_cols=38  Identities=24%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ..|.+|.|+|. |++|..++-.|++.|++|++++.++++
T Consensus        19 ~~m~~IaViGl-GYVGLp~A~~~A~~G~~V~g~Did~~k   56 (444)
T 3vtf_A           19 SHMASLSVLGL-GYVGVVHAVGFALLGHRVVGYDVNPSI   56 (444)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            46789999996 999999999999999999999987543

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=96.93  E-value=0.0017  Score=52.41  Aligned_cols=89  Identities=19%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEee----cCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLS----RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~----r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ++|.|.||+|.+|+.+++.|.++++++..+.    ++............+.+...|   ++   . + ++|+||.|.|.+
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~---~~---~-~-~~DvV~~a~g~~   72 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLP---EG---P-L-PVDLVLASAGGG   72 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECC---SS---C-C-CCSEEEECSHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCC---hh---h-c-CCCEEEECCCcc
Confidence            4799999999999999999998776543221    111110000001123333222   32   2 4 899999998853


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            +...+....+.|+ ++|-.|+
T Consensus        73 ~------------s~~~a~~~~~~G~-~vId~s~   93 (331)
T 2yv3_A           73 I------------SRAKALVWAEGGA-LVVDNSS   93 (331)
T ss_dssp             H------------HHHHHHHHHHTTC-EEEECSS
T ss_pred             c------------hHHHHHHHHHCCC-EEEECCC
Confidence            1            2334455556676 5776766

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.92  E-value=0.00055  Score=54.94  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=46.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..+++|.|+|. |.+|..+++.|++.|++|++.+|++++.... ...++.+       ..+++++++++|+||-+..
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l-~~~g~~~-------~~~~~e~~~~aDvVi~~vp   96 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASL-AALGATI-------HEQARAAARDADIVVSMLE   96 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HTTTCEE-------ESSHHHHHTTCSEEEECCS
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHH-HHCCCEe-------eCCHHHHHhcCCEEEEECC
Confidence            35679999997 9999999999999999999999886542111 1112222       1234456667777777654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.92  E-value=0.0029  Score=50.62  Aligned_cols=63  Identities=21%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...++++.|+|. |.||+.+++.|...|++|++.+|+.+...            .+.   .+++++++++|+|+.+...
T Consensus       141 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------~~~---~~l~ell~~aDvV~l~~p~  203 (311)
T 2cuk_A          141 DLQGLTLGLVGM-GRIGQAVAKRALAFGMRVVYHARTPKPLP------------YPF---LSLEELLKEADVVSLHTPL  203 (311)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSS------------SCB---CCHHHHHHHCSEEEECCCC
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHCCCEEEEECCCCcccc------------ccc---CCHHHHHhhCCEEEEeCCC
Confidence            356789999996 99999999999999999999888754421            122   2456778889999988654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.92  E-value=0.0031  Score=49.63  Aligned_cols=57  Identities=21%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+++++|.|+++-+|+.++..|+..|+.|+++.++.                      .++++.++.+|+||...|.
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T----------------------~~L~~~~~~ADIVI~Avg~  214 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT----------------------RDLADHVSRADLVVVAAGK  214 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC----------------------SCHHHHHHTCSEEEECCCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC----------------------cCHHHHhccCCEEEECCCC
Confidence            35789999999989999999999999999999886532                      1356778889999998874

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.91  E-value=0.00057  Score=55.28  Aligned_cols=74  Identities=14%  Similarity=0.052  Sum_probs=47.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEE------ccCC-CHHHHHHHhcCCCEEEEcc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQ------GNLL-SSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~------~Dl~-d~~~~~~~~~~~d~vi~~a  129 (200)
                      ++|.|+|+ |.+|..++..|.+.|++|++++|+++..........+.+..      ..+. ...++++++.++|+||.+.
T Consensus         5 mki~iiG~-G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence            68999997 99999999999999999999988754311100000111110      0110 1123456677899999987


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      ..
T Consensus        84 ~~   85 (359)
T 1bg6_A           84 PA   85 (359)
T ss_dssp             CG
T ss_pred             Cc
Confidence            63

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.91  E-value=0.002  Score=51.96  Aligned_cols=70  Identities=11%  Similarity=0.031  Sum_probs=50.4

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...+++|.|+|. |.+|+.+++.|...|++|++.+|+.+..... ...++..     .   +++++++++|+|+.+....
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~-----~---~l~e~l~~aDvVi~~vp~~  221 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-AEFQAEF-----V---STPELAAQSDFIVVACSLT  221 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-HTTTCEE-----C---CHHHHHHHCSEEEECCCCC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcchhHH-HhcCcee-----C---CHHHHHhhCCEEEEeCCCC
Confidence            356789999997 9999999999999999999999876532111 1112222     1   2456777899999987643

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.90  E-value=0.00083  Score=52.79  Aligned_cols=70  Identities=14%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ...+++++|+|+ |++|++++..|.+.|. +|++..|+.++..+   ......+.++  ++.+.   ..  .++|+||++
T Consensus       117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~--~~~~l---~~--~~~DivIna  188 (272)
T 3pwz_A          117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRIS--RYEAL---EG--QSFDIVVNA  188 (272)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEE--CSGGG---TT--CCCSEEEEC
T ss_pred             CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEe--eHHHh---cc--cCCCEEEEC
Confidence            356889999998 8999999999999996 89999998654221   1011123333  22222   11  679999998


Q ss_pred             cc
Q 029008          129 VG  130 (200)
Q Consensus       129 ag  130 (200)
                      ..
T Consensus       189 Tp  190 (272)
T 3pwz_A          189 TS  190 (272)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.89  E-value=0.0033  Score=50.51  Aligned_cols=73  Identities=10%  Similarity=-0.047  Sum_probs=52.0

Q ss_pred             CCCeEEEEccCchhHHH-HHHHHHHCCCcEEEeecCCCCcc-cccCCCCeeEEEccCCCHHHHHHHh-cCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSH-ICREALDRGLTVASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEAL-DGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~-l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~vi~~ag~  131 (200)
                      .+++|.|+|. |+.|.. +++.|.++|++|.+.+++..... +.....++.+..+.  +++.   +. .++|.||...|.
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~--~~~~---l~~~~~d~vV~Spgi   76 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGF--DAAQ---LDEFKADVYVIGNVA   76 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESC--CGGG---GGSCCCSEEEECTTC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCC--CHHH---cCCCCCCEEEECCCc
Confidence            4689999998 899995 99999999999999998764321 11222466766552  3432   33 479999998886


Q ss_pred             CC
Q 029008          132 FG  133 (200)
Q Consensus       132 ~~  133 (200)
                      ..
T Consensus        77 ~~   78 (326)
T 3eag_A           77 KR   78 (326)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.87  E-value=0.006  Score=48.25  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=27.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVAS   85 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~   85 (200)
                      ..++|+|.|++|..|+.+++.+.+.|++++.
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~   36 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTYGTKIVA   36 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHcCCeEEE
Confidence            4568999999999999999999999998553

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.87  E-value=0.0014  Score=46.43  Aligned_cols=87  Identities=14%  Similarity=0.082  Sum_probs=52.6

Q ss_pred             CCeEEEEccC---chhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           56 SEKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      .++|.|+|++   |.+|..+++.|.+.|++|+.+..+.....  .  .++.++ -++      .++.+.+|+++-+... 
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~--i--~G~~~~-~sl------~el~~~~Dlvii~vp~-   80 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT--L--LGQQGY-ATL------ADVPEKVDMVDVFRNS-   80 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE--E--TTEECC-SST------TTCSSCCSEEECCSCS-
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc--c--CCeecc-CCH------HHcCCCCCEEEEEeCH-
Confidence            4689999998   78999999999999999877665431010  0  122221 122      2233468888876532 


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                         ..        ...+++.+.+.|++.+++.+
T Consensus        81 ---~~--------v~~v~~~~~~~g~~~i~i~~  102 (145)
T 2duw_A           81 ---EA--------AWGVAQEAIAIGAKTLWLQL  102 (145)
T ss_dssp             ---TH--------HHHHHHHHHHHTCCEEECCT
T ss_pred             ---HH--------HHHHHHHHHHcCCCEEEEcC
Confidence               11        12345555566777655543

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.86  E-value=0.0088  Score=48.47  Aligned_cols=69  Identities=12%  Similarity=0.155  Sum_probs=40.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+|.|.||||++|..+++.|.++.+   ++..+......-....+. +.....-|+. +    ..++++|+||.|.+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~-~~~~~~~~~~-~----~~~~~~Dvvf~a~~~   73 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFR-GQEIEVEDAE-T----ADPSGLDIALFSAGS   73 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEET-TEEEEEEETT-T----SCCTTCSEEEECSCH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeec-CCceEEEeCC-H----HHhccCCEEEECCCh
Confidence            5899999999999999999888754   455554322211110111 1111112222 1    234689999998874

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.85  E-value=0.00085  Score=53.18  Aligned_cols=36  Identities=17%  Similarity=0.085  Sum_probs=32.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      .++|.|+|. |.+|..+++.|++.|++|++.+|++++
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            468999996 999999999999999999999998765

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.85  E-value=0.0027  Score=49.72  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=47.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++++|.|+++-+|+.++..|+..|+.|+++.++.                      .++++.++.+|+||...|.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t----------------------~~L~~~~~~ADIVI~Avg~  203 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT----------------------KDIGSMTRSSKIVVVAVGR  203 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------SCHHHHHHHSSEEEECSSC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc----------------------ccHHHhhccCCEEEECCCC
Confidence            6789999999988999999999999999999886531                      2356677788999998875

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.85  E-value=0.0027  Score=50.66  Aligned_cols=69  Identities=13%  Similarity=0.111  Sum_probs=50.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|+|. |.||+.+++.|...|++|++.+|+.+.....  ..++..     .   +++++++++|+|+.+....
T Consensus       139 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~--~~g~~~-----~---~l~ell~~aDvV~l~~p~~  207 (307)
T 1wwk_A          139 ELEGKTIGIIGF-GRIGYQVAKIANALGMNILLYDPYPNEERAK--EVNGKF-----V---DLETLLKESDVVTIHVPLV  207 (307)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHHH--HTTCEE-----C---CHHHHHHHCSEEEECCCCS
T ss_pred             ccCCceEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCCChhhHh--hcCccc-----c---CHHHHHhhCCEEEEecCCC
Confidence            356789999996 9999999999999999999999876542111  112222     1   3566778899999987643

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.83  E-value=0.0033  Score=51.02  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=51.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ..++++.|+|- |.||+.+++.|...|.+|++.+|+.....+    ..+.+.        +++++++++|+|+.+.....
T Consensus       146 l~gktvgIiGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~----~~~~~~--------~l~ell~~aDvV~l~~Plt~  212 (343)
T 2yq5_A          146 IYNLTVGLIGV-GHIGSAVAEIFSAMGAKVIAYDVAYNPEFE----PFLTYT--------DFDTVLKEADIVSLHTPLFP  212 (343)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCGGGT----TTCEEC--------CHHHHHHHCSEEEECCCCCT
T ss_pred             cCCCeEEEEec-CHHHHHHHHHHhhCCCEEEEECCChhhhhh----cccccc--------CHHHHHhcCCEEEEcCCCCH
Confidence            45789999996 999999999999999999999988654211    122221        46778889999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	3e-16
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	3e-13
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	1e-12
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	6e-12
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	9e-12
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	4e-11
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-10
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	1e-10
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	5e-10
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	1e-09
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	5e-09
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	1e-08
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	1e-08
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	4e-08
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	9e-08
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	1e-07
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	3e-07
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	3e-07
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	3e-07
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	3e-07
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	7e-07
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	2e-06
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	5e-06
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	8e-06
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	9e-06
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	2e-05
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	2e-05
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	2e-05
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	4e-05
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	9e-04

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 2/112 (1%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ + G  G  G     +A+  G  V  L R   S L            G++L +    +
Sbjct: 5   KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS-SRLPSEGPRPAHVVVGDVLQAADVDK 63

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADF 169
            + G  AVI  +G     S    +      N + A    GV + V  ++A  
Sbjct: 64  TVAGQDAVIVLLGTRNDLSPTT-VMSEGARNIVAAMKAHGVDKVVACTSAFL 114

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++L+ GG GFVGSH+  + +  G  V  +        + +  + +      L++ D  + 
Sbjct: 3   RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGR-KRNVEHWIGHENFELINHDVVEP 61

Query: 118 ALDGVTAVI-----SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYIS 165
               V  +      +    +  N     K N    +N +  A   G  R +  S
Sbjct: 62  LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 114

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++ + G  G VGS I R+   RG     L      +L DS A +  +            E
Sbjct: 4   RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFA----------SE 53

Query: 118 ALDGVTAVISCVGGFGSNSYM----YKINGTANINAIRAASEKGVKRFVYIS 165
            +D V    + VGG  +N+         N     N I AA +  V + +++ 
Sbjct: 54  RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLG 105

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 61.2 bits (147), Expect = 6e-12
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN--NVIWHQGNLLSSDSW 115
            + V+G  G  G+ + R A   G  V +   S +  + +      NV   QG LL++   
Sbjct: 5   TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPL 64

Query: 116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
            + L     +        +   +         +   AA   G  +    S
Sbjct: 65  MDTLFEGAHLAFINTTSQAGDEIA-----IGKDLADAAKRAGTIQHYIYS 109

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 60.6 bits (146), Expect = 9e-12
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 21/131 (16%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN----------NVIWH 105
           S+  L+ G  G  GS++    L++G  V  + R   S   +   +              H
Sbjct: 1   SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH 60

Query: 106 QGNLLSSDSWKEALDG--------VTAVISCVGGFGSNSYMYKIN--GTANI-NAIRAAS 154
            G+L  + +    L          + A+      F S  Y   ++  GT  +  AIR   
Sbjct: 61  YGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG 120

Query: 155 EKGVKRFVYIS 165
            +   RF   S
Sbjct: 121 LEKKTRFYQAS 131

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 58.6 bits (140), Expect = 4e-11
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 12/116 (10%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-------LRDSWANNVIWHQGNLL 110
           ++L++GG G++G  I   ++  G     L R    S       L           + +L 
Sbjct: 5   RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 64

Query: 111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA 166
                 +AL  V  VIS +        +   +    +  + A  E G  +    S 
Sbjct: 65  DHQRLVDALKQVDVVISAL-----AGGVLSHHILEQLKLVEAIKEAGNIKRFLPSE 115

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 57.3 bits (137), Expect = 1e-10
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTV---ASLSRSGRSSL---RDSWANNVIWHQGNLLS 111
           ++LV GG+G++GSH C + L  G  V    +L  S RS L         +  + +G++ +
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61

Query: 112 SDSWKEAL-----DGV--TAVISCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVY 163
                E L     D V   A +  VG         Y  N    +  I A     VK F++
Sbjct: 62  EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121

Query: 164 IS 165
            S
Sbjct: 122 SS 123

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---------SLSRSG-RSSLRDSWAN-NVIWHQ 106
           +LLV GG GF+GSH  R+ L                SL+ +G R++L    A+  + +  
Sbjct: 2   RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61

Query: 107 GNLLSSDSWKEALDGVTAVISC------VGGFGSNSYMYKINGTANINAIRAASEKGVKR 160
           G++  +      L GV A++               S   + N       ++ A + GV R
Sbjct: 62  GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121

Query: 161 FVYIS 165
            V++S
Sbjct: 122 VVHVS 126

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ + G  GF+ SHI R     G  V +     ++           +H  +L   ++  +
Sbjct: 17  KISITGAGGFIASHIARRLKHEGHYVIASDWK-KNEHMTEDMFCDEFHLVDLRVMENCLK 75

Query: 118 ALDGVTAVISC-------VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYI-SAADF 169
             +GV  V +             ++S +   N   + N I AA   G+KRF Y  SA  +
Sbjct: 76  VTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY 135

Query: 170 GVANYLLQGYYEGKDSNLSPL 190
                L       K+S+  P 
Sbjct: 136 PEFKQLETTNVSLKESDAWPA 156

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA-----NNVIWHQGNLLSS 112
           KLL+ GG GF+GS++   AL +G+ +       R    D+        N  +  G++ + 
Sbjct: 2   KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 61

Query: 113 DSWKEALDGV-------TAVISCVGGFGSN-SYMYKINGTANINAIRAASEKGVK-RFVY 163
           +     +           A    +     N    ++IN    +N + A  +       +Y
Sbjct: 62  NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121

Query: 164 IS 165
            S
Sbjct: 122 SS 123

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 5e-09
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 22/128 (17%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------LRDSWANNVIWHQGN 108
           L+ G  G  GS++    L++G  V  + R   S             +     N+  H G+
Sbjct: 5   LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGD 64

Query: 109 LLSSDSWKEALDG--------VTAVISCVGGFGSNSYMYKIN--GTANI-NAIRAASEKG 157
           L  S    + ++         + A       F    Y   ++  GT  + +A++      
Sbjct: 65  LTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLIN 124

Query: 158 VKRFVYIS 165
             +F   S
Sbjct: 125 SVKFYQAS 132

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 23/131 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLRDSWA--NNVIWHQGNLLS 111
           K+L+ GG GF+GS + R  +       + +  L+ +G        +  N   +   ++  
Sbjct: 2   KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61

Query: 112 SDSWKEALDGVT-------AVISCVGGFGSN-SYMYKINGTANINAIRAASEKGVK---- 159
           S       +          A  S V    +  +   + N       +  A +        
Sbjct: 62  SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121

Query: 160 -----RFVYIS 165
                RF +IS
Sbjct: 122 KKNNFRFHHIS 132

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 51.3 bits (121), Expect = 1e-08
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--------LRDSWANNVIWHQGNL 109
           ++L++G  G++G H+ + +LD G     L R   +S        L    A+      G++
Sbjct: 5   RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 64

Query: 110 LSSDSWKEALDGVTAVISCVGGFGSNSYMY 139
               S  EA+  V  VIS VG     S + 
Sbjct: 65  DDHASLVEAVKNVDVVISTVGSLQIESQVN 94

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 50.2 bits (118), Expect = 4e-08
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS 89
          P    +LV G NGFV SH+  + L+ G  V   +RS
Sbjct: 9  PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS 44

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.2 bits (113), Expect = 9e-08
 Identities = 9/59 (15%), Positives = 20/59 (33%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           ++L+ G  G  G H+    L        ++ + ++       +N +     LL      
Sbjct: 4   RVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS 62

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 48.4 bits (113), Expect = 1e-07
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 58  KLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           ++L+LG NGF+G+H+    L      V  L     +  R     +  + +G++     W 
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWI 61

Query: 117 EAL 119
           E  
Sbjct: 62  EYH 64

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.1 bits (110), Expect = 3e-07
 Identities = 11/80 (13%), Positives = 27/80 (33%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G +G  G  + ++  +      +      +  ++          G++  +DS   A 
Sbjct: 7   LVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAF 66

Query: 120 DGVTAVISCVGGFGSNSYMY 139
            G+ A++            +
Sbjct: 67  QGIDALVILTSAVPKMKPGF 86

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA-----SLSRSG-RSSLRDSWANNVIWHQGNLLS 111
            ++V GG GF+GS+      +    V       L+ +G +++L     + V    G++  
Sbjct: 4   NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 63

Query: 112 SDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAI 150
           ++   +      A++       +++ +   +   + N I
Sbjct: 64  AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFI 102

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANNVIWHQGNL 109
           S+ +LV GG G++GSH   E ++ G           S+      L     +++ +++ +L
Sbjct: 1   SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDL 60

Query: 110 LSSDSWKEAL-----DGVT--AVISCVGGFGSNSYMY-KINGTANINAIRAASEKGVKRF 161
                 ++       D V   A +  VG        Y   N    +  +    +  V +F
Sbjct: 61  CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 120

Query: 162 VY 163
           V+
Sbjct: 121 VF 122

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 47.2 bits (110), Expect = 3e-07
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSR--SGRSSLRDS--WANNVIWHQGNLLSSD 113
           ++ V G  GF G  +       G TV   S       SL ++   A+ +    G++   +
Sbjct: 10  RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN 69

Query: 114 SW 115
             
Sbjct: 70  KL 71

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 46.4 bits (108), Expect = 7e-07
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS 89
          K+L+ G NG +G  I ++   + + V      
Sbjct: 3  KILITGANGQLGREIQKQLKGKNVEVIPTDVQ 34

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 53  PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSR----------SGRSSLRDSWANNV 102
           P   +  L+ G  GF+GS++    L     V  L              RS + +   +N 
Sbjct: 13  PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNF 72

Query: 103 IWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSY------MYKINGTANINAIRAASEK 156
            + QG++ + D    A  GV  V+                     N    +N + AA + 
Sbjct: 73  KFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA 132

Query: 157 GVKRFVYI 164
            V+ F Y 
Sbjct: 133 KVQSFTYA 140

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA-----NNVIWHQGNLLSS 112
             LV G  G  G+++ +  L++G  V  L     S  R          ++ +  G++  +
Sbjct: 2   SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA 61

Query: 113 DSWKE 117
            S + 
Sbjct: 62  CSVQR 66

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 43.0 bits (99), Expect = 8e-06
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 13/65 (20%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
            +L+ G  G VG  + R     G  +A    S                 G+  +     E
Sbjct: 2   NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKE-------------FCGDFSNPKGVAE 48

Query: 118 ALDGV 122
            +  +
Sbjct: 49  TVRKL 53

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 9e-06
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSS---------LRDSWANNVI 103
           +EK+LV GG G++GSH   E L+ G       +   + R           +++    +V 
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61

Query: 104 WHQGNLLSSDSW 115
           + + ++L   + 
Sbjct: 62  FEEMDILDQGAL 73

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.3 bits (97), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 23/64 (35%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           +++V+GG+G+ G         +   V  +    R           +    ++    S  +
Sbjct: 3   RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 62

Query: 118 ALDG 121
           AL G
Sbjct: 63  ALTG 66

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
            + +LG +G  G  + +E L++GL         R    D  A   +  +         
Sbjct: 16  SVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDD 73

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 11/96 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSG-----------RSSLRDSWANNVIWHQ 106
             L+ G  G  GS++    L +G  V  L R                  +     +  H 
Sbjct: 3   IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62

Query: 107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKIN 142
            +L  + S +  +D +           S+  +    
Sbjct: 63  ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEI 98

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (94), Expect = 4e-05
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 60  LVLGGNGFVGSHICREALDRGLT----VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           +V GG GF+GS+I +   D+G+T    V +L    +              + + L     
Sbjct: 3   IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMA 62

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 37.1 bits (84), Expect = 9e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 58  KLLVLGGNGFVGSHICREAL-DRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           ++LV GG G++GSH  R  L D   +V  +     +  +             L  SD  K
Sbjct: 4   RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.92
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.92
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.91
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.91
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.91
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.9
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.9
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.89
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.88
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.88
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.88
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.88
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.88
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.88
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.88
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.87
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.87
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.87
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.87
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.87
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.87
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.87
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.86
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.86
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.86
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.86
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.86
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.86
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.86
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.86
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.86
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.86
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.86
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.86
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.86
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.86
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.86
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.85
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.85
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.85
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.85
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.85
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.85
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.85
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.85
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.85
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.84
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.84
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.84
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.83
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.83
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.83
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.83
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.83
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.82
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.82
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.82
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.82
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.82
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.81
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.81
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.81
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.81
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.81
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.81
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.81
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.81
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.8
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.8
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.79
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.79
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.78
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.78
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.78
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.77
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.77
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.76
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.76
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.76
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.75
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.75
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.73
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.73
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.72
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.7
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.68
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.65
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.63
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.59
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.59
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.55
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.55
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.55
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.51
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.47
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.46
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.41
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.76
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.57
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.56
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.38
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.3
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.29
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.27
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.22
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.13
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.11
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.09
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.03
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.02
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	98.01
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.01
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	98.01
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.95
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.92
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.89
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.89
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.85
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.84
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.83
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.81
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.81
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.8
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.79
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.78
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.78
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.77
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.75
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.74
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.74
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.72
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.71
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.7
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.69
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.69
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.69
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.65
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.63
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.63
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.6
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.59
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.52
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.51
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.51
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.49
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.49
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.47
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.41
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.4
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.37
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.32
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.31
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.3
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.25
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.24
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.23
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.22
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.21
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.14
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.14
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.07
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.06
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.05
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.03
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.0
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.99
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.95
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.95
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.94
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.92
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.9
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.89
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.88
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.85
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.85
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.83
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.83
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.82
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.81
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.8
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.77
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.75
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.74
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.72
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.72
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.71
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.71
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.69
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.69
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.69
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.68
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.67
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.67
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.65
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.62
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.61
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.57
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.55
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.53
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.51
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.49
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.47
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.47
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.43
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.43
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.41
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.41
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	96.39
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.34
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.34
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.33
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.33
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.32
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.31
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.3
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.29
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.29
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.28
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.26
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.22
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.21
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.19
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.17
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.16
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.14
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.12
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.03
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.98
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.88
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.88
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.87
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.83
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.81
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.72
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.69
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.69
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.63
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.47
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.46
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.44
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.36
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.31
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.26
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.26
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.22
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.16
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.14
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.12
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.96
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.94
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.6
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.54
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.48
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.45
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	94.44
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.38
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.36
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.33
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.32
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.29
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.25
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.24
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	94.1
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.08
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.06
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.95
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	93.94
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.93
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.9
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	93.9
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.85
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.82
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.74
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.61
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.55
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	93.54
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.44
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.25
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	93.21
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.11
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	93.09
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.03
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.82
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	92.76
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.64
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	92.52
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	92.28
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.24
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.13
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.12
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	92.03
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.01
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.86
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	91.84
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	91.66
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.56
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	91.43
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.37
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	91.31
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	91.23
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.09
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.09
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	90.92
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	90.77
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.77
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	90.57
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.51
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	90.39
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	90.37
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.35
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.05
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	89.96
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.95
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.81
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	89.57
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.43
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.14
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	88.99
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	88.96
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	88.69
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.51
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.34
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.99
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.74
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.74
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	87.69
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.63
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.51
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	87.48
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.48
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	87.45
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.78
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.74
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	86.67
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.53
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	86.46
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.32
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	86.29
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.28
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	86.16
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.9
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	85.81
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	85.68
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	85.67
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.14
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.81
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	84.39
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	83.86
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.36
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	83.21
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.19
d1qkia1	203	Glucose 6-phosphate dehydrogenase, N-terminal doma	82.67
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	82.6
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.48
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	82.33
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	82.3
d1weka_	208	Hypothetical protein TT1465 (TTHA1644) {Thermus th	82.2
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	81.93
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	81.85
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	81.73
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	81.67
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	81.66
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	81.61
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	81.59
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.43
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	80.87
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	80.37

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.9e-25  Score=181.85  Aligned_cols=138  Identities=20%  Similarity=0.225  Sum_probs=110.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc----c------cccCCCCeeEEEccCCCHHHHHHHhcC--CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----L------RDSWANNVIWHQGNLLSSDSWKEALDG--VT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~------~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d  123 (200)
                      .|++||||||||||++|+++|+++|++|++++|.....    .      ......+++++++|++|.+.+++++++  +|
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            37899999999999999999999999999999964320    0      112245899999999999999999985  59


Q ss_pred             EEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCC---EEEEEec-cccCcCC----------cCCcchhhhH
Q 029008          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVK---RFVYISA-ADFGVAN----------YLLQGYYEGK  183 (200)
Q Consensus       124 ~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~---~~v~vSS-~~~~~~~----------~~~~~Y~~sK  183 (200)
                      +|||+|+...      ++...+++|+.|+.+++++|++.+++   +||++|| ..||.++          .|.++|+.||
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK  160 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK  160 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCChHHHHH
Confidence            9999998643      33557899999999999999987654   7999999 5676532          3567899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      .++|++++.+
T Consensus       161 ~~~E~~~~~~  170 (357)
T d1db3a_         161 LYAYWITVNY  170 (357)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.6e-24  Score=174.80  Aligned_cols=137  Identities=23%  Similarity=0.303  Sum_probs=113.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------cccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      |+||||||+||||++|++.|+++|++|++++|......      +.....+++++++|++|.+.+.++++  ++|+|||+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl   80 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF   80 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence            57999999999999999999999999999987433211      11224589999999999999999987  79999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC-----------CcCCcchhhhHHhhHHHH
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA-----------NYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~-----------~~~~~~Y~~sK~~~E~~~  190 (200)
                      |+...      ++...+++|+.|+.+++++|++.++++||++|| .+|+..           ..|...|+.+|.+.|.++
T Consensus        81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~  160 (338)
T d1udca_          81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL  160 (338)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHHHH
T ss_pred             CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHHHHhhhhHHH
Confidence            98643      345678999999999999999999999999998 445322           145678999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      .++
T Consensus       161 ~~~  163 (338)
T d1udca_         161 TDL  163 (338)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.3e-24  Score=161.11  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=114.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~  134 (200)
                      .+|+|+||||||++|++++++|+++|++|++++|++++.. .....+++++.+|++|.+++.++++++|+|||++|... 
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~-~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~-   79 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP-SEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN-   79 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC-SSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc-cccccccccccccccchhhHHHHhcCCCEEEEEeccCC-
Confidence            3689999999999999999999999999999999876632 23356899999999999999999999999999998743 


Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCC---cCCcchhhhHHhhHHHHHhh
Q 029008          135 NSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVAN---YLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~~---~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .....+++..++.++++++++++++|||++||. .++.+.   .....|...|...|+++++.
T Consensus        80 ~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~  142 (205)
T d1hdoa_          80 DLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRES  142 (205)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccccccccccchHHHHHHHHHHhc
Confidence            334557888999999999999999999999984 333332   22346889999999999875

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6e-24  Score=171.95  Aligned_cols=137  Identities=19%  Similarity=0.226  Sum_probs=113.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------cccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      |.||||||+||||++|+++|+++|++|+++++......      ......+++++.+|++|.+.++.+++  ++|+|||+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   81 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence            67999999999999999999999999999986433211      12234689999999999999999887  78999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC--------------CcCCcchhhhHHhhH
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA--------------NYLLQGYYEGKDSNL  187 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~--------------~~~~~~Y~~sK~~~E  187 (200)
                      |+...      .+.....+|+.++.+++++|++.++++||++|| .+||..              ..|.+.|+.+|.++|
T Consensus        82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E  161 (347)
T d1z45a2          82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIE  161 (347)
T ss_dssp             CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHHHH
T ss_pred             cccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHHHHH
Confidence            98653      335667899999999999999999999999999 456532              135678999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      ++++++
T Consensus       162 ~~~~~~  167 (347)
T d1z45a2         162 NILNDL  167 (347)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.4e-23  Score=170.58  Aligned_cols=142  Identities=22%  Similarity=0.226  Sum_probs=117.4

Q ss_pred             CCCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           51 VPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        51 ~~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      -++.+.|+||||||+||||++|+++|+++|++|+++++....... .......+..+|+.|.+.+..+++++|+|||+|+
T Consensus        10 ~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~   88 (363)
T d2c5aa1          10 YWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT-EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA   88 (363)
T ss_dssp             SCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC-GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh-hhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence            355678899999999999999999999999999999876554322 2234668888999999999999999999999997


Q ss_pred             cCC-------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcC-----------------CcCCcchhhhHHh
Q 029008          131 GFG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVA-----------------NYLLQGYYEGKDS  185 (200)
Q Consensus       131 ~~~-------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~-----------------~~~~~~Y~~sK~~  185 (200)
                      ...       .+...+.+|+.++.++++++.+.++++||++||. .|+..                 ..|.+.|+.+|.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~~  168 (363)
T d2c5aa1          89 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLA  168 (363)
T ss_dssp             CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHHHH
Confidence            543       3355778999999999999999999999999994 45422                 1356789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      +|++++++
T Consensus       169 ~E~~~~~~  176 (363)
T d2c5aa1         169 TEELCKHY  176 (363)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=168.88  Aligned_cols=137  Identities=19%  Similarity=0.243  Sum_probs=109.6

Q ss_pred             CeE-EEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-----------cccCCCCeeEEEccCCCHHHHHHHhc--CC
Q 029008           57 EKL-LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------RDSWANNVIWHQGNLLSSDSWKEALD--GV  122 (200)
Q Consensus        57 ~~i-lVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~  122 (200)
                      |+| |||||+||||++|+++|+++||+|++++|......           ......+++++.+|++|++.+.+++.  ++
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   80 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP   80 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence            567 99999999999999999999999999999754210           11113478999999999999999986  56


Q ss_pred             CEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCC---CEEEEEec-cccCcCC----------cCCcchhhh
Q 029008          123 TAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGV---KRFVYISA-ADFGVAN----------YLLQGYYEG  182 (200)
Q Consensus       123 d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~---~~~v~vSS-~~~~~~~----------~~~~~Y~~s  182 (200)
                      ++++|+++...      .+...+++|+.|+.++++++++.+.   ++||++|| ..||.+.          .|.++|+.|
T Consensus        81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~~~Yg~s  160 (347)
T d1t2aa_          81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAA  160 (347)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred             ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCCCHHHHH
Confidence            89999987543      3455679999999999999998875   38999998 5676532          346789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |.++|++++++
T Consensus       161 K~~aE~~~~~~  171 (347)
T d1t2aa_         161 KLYAYWIVVNF  171 (347)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.8e-24  Score=162.31  Aligned_cols=141  Identities=18%  Similarity=0.246  Sum_probs=117.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ++++|+||||||++|++|+++|+++|+  +|++++|++..... .....+.+..+|+.+.+++.++++++|++||++|..
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~-~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-EAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-GGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc-cccceeeeeeeccccccccccccccccccccccccc
Confidence            457899999999999999999999995  89999998655322 234578888899999999999999999999999864


Q ss_pred             C---CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh-ccCcc
Q 029008          133 G---SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC-YSLCC  198 (200)
Q Consensus       133 ~---~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~-~~~~~  198 (200)
                      .   .+....++|+.++.+++++|.+.++++||++|+.  +....+.+.|+.+|+.+|+.+.+. ++.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~--~~~~~~~~~Y~~~K~~~E~~l~~~~~~~~~  159 (232)
T d2bkaa1          92 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSK--GADKSSNFLYLQVKGEVEAKVEELKFDRYS  159 (232)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT--TCCTTCSSHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             ccccchhhhhhhcccccceeeecccccCccccccCCcc--ccccCccchhHHHHHHhhhccccccccceE
Confidence            3   3455678999999999999999999999999995  344455678999999999999885 44443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=6.2e-23  Score=158.15  Aligned_cols=136  Identities=20%  Similarity=0.189  Sum_probs=110.6

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ++.++|+++||||+++||+++++.|+++|++|++++|+.+..      .++..+++|++|+++++++++       ++|+
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   76 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP------KGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEV   76 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC------TTSEEEECCTTCHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh------cCceEEEEecCCHHHHHHHHHHHHHhcCCceE
Confidence            456899999999999999999999999999999999986552      467789999999999888765       5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .|+..+++|+.+++.+.+++    ++.+.++||++||...-.+.+....|+.+|++++.+.
T Consensus        77 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt  156 (237)
T d1uzma1          77 LVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMA  156 (237)
T ss_dssp             EEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHHHHHHHH
T ss_pred             EEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCcccHHHHHHHHHHHHHH
Confidence            999999532          35678899999998776654    5556679999999654445566789999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       157 ~~l  159 (237)
T d1uzma1         157 RSI  159 (237)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.88  E-value=1.1e-22  Score=164.39  Aligned_cols=138  Identities=17%  Similarity=0.177  Sum_probs=111.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC------cccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS------SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      +||+||||||+||||++|+++|+++|++|.++.++...      ........+++++.+|+.|.+.+..++.+.|.|+|+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            47899999999999999999999999987666553211      111223468999999999999999999999999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------------------CcCCcch
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------------------NYLLQGY  179 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------------------~~~~~~Y  179 (200)
                      |+...      ++...+++|+.|+.++++++...+. ++|++|| ..||..                      ..|.+.|
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            98643      4567889999999999999999886 6777776 556531                      1345789


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|.++|.+++.+
T Consensus       160 ~~sK~~~E~~~~~~  173 (346)
T d1oc2a_         160 SSTKAASDLIVKAW  173 (346)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.88  E-value=1.1e-22  Score=165.70  Aligned_cols=137  Identities=19%  Similarity=0.196  Sum_probs=107.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEE-eecCCCCc-c----cccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVAS-LSRSGRSS-L----RDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~-~~r~~~~~-~----~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      |+||||||+||||++|+++|+++|++|++ +++..... .    ......+++++.+|++|++.+.++++  .+|+|||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   80 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence            58999999999999999999999998555 44332211 1    11223589999999999999999887  58999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcC---------CCEEEEEec-cccCcC--------------------
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKG---------VKRFVYISA-ADFGVA--------------------  172 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~---------~~~~v~vSS-~~~~~~--------------------  172 (200)
                      |+...      ++...+++|+.|+.+++++|.+.+         +++||++|| ..||..                    
T Consensus        81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~  160 (361)
T d1kewa_          81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA  160 (361)
T ss_dssp             CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred             ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCCC
Confidence            98654      456688999999999999997764         458999999 456532                    


Q ss_pred             CcCCcchhhhHHhhHHHHHhh
Q 029008          173 NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ..|.+.|+.+|.++|.+++.+
T Consensus       161 ~~p~s~Yg~sK~~~E~~~~~~  181 (361)
T d1kewa_         161 YAPSSPYSASKASSDHLVRAW  181 (361)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            134567999999999999875

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.5e-24  Score=169.32  Aligned_cols=133  Identities=20%  Similarity=0.228  Sum_probs=102.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .|+||||||+||||++|+++|+++|++|++++|........    ....++.+...|+     ++.++.++|+|||+|+.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~~d~VihlAa~   75 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV-----VEPLYIEVDQIYHLASP   75 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCT-----TSCCCCCCSEEEECCSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHH-----HHHHHcCCCEEEECccc
Confidence            47999999999999999999999999999998744332211    1123455555554     34456789999999986


Q ss_pred             CC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------cCCcchhhhHHhhHHH
Q 029008          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------YLLQGYYEGKDSNLSP  189 (200)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~---------------~~~~~Y~~sK~~~E~~  189 (200)
                      ..      ++...+++|+.++.+++++|++.++ ++||+|| .+|+.+.               .|.+.|+.+|.++|.+
T Consensus        76 ~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~  154 (312)
T d2b69a1          76 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETM  154 (312)
T ss_dssp             CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHH
Confidence            43      3456789999999999999999887 8999998 5565421               3567899999999999


Q ss_pred             HHhhc
Q 029008          190 LLACY  194 (200)
Q Consensus       190 ~~~~~  194 (200)
                      ++.+.
T Consensus       155 ~~~~~  159 (312)
T d2b69a1         155 CYAYM  159 (312)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.88  E-value=1.8e-22  Score=156.53  Aligned_cols=140  Identities=12%  Similarity=0.124  Sum_probs=115.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      .++|+++||||+++||+++++.|+++|++|++.+|++.+..+   .....++.++.+|++|+++++++++       ++|
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999999999999999998654221   2234578999999999999988764       589


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ++|||||...          .|+..+++|+.+++.+.+++    ++++.++||++||.....+.+....|+++|++++.+
T Consensus        83 ilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~l  162 (247)
T d2ew8a1          83 ILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGF  162 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCcccccchhhhccHHHH
Confidence            9999999642          45678899999999887776    455667999999965555666678999999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       163 tk~l  166 (247)
T d2ew8a1         163 TRAL  166 (247)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=2.3e-22  Score=162.05  Aligned_cols=139  Identities=21%  Similarity=0.200  Sum_probs=116.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc----------cccCCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----------RDSWANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----------~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      .+|+||||||+||||++|+++|+++|++|++++|......          ......+++++.+|+.|...+.......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~   94 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY   94 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccccc
Confidence            5689999999999999999999999999999997543211          111235789999999999999999999999


Q ss_pred             EEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhH
Q 029008          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNL  187 (200)
Q Consensus       125 vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E  187 (200)
                      ++|+++...      ++...+++|+.|+.+++++|.+.++++||++|| ..||..          ..|.+.|+.+|.++|
T Consensus        95 v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E  174 (341)
T d1sb8a_          95 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNE  174 (341)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHH
T ss_pred             cccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCCCCCCCCcchHHHHHHH
Confidence            999987532      345678999999999999999999999999999 556643          246689999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      ++++.+
T Consensus       175 ~~~~~~  180 (341)
T d1sb8a_         175 LYADVF  180 (341)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998865

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.5e-22  Score=163.02  Aligned_cols=137  Identities=18%  Similarity=0.242  Sum_probs=108.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHH-HhcCCCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE-ALDGVTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~~ag~~~-  133 (200)
                      |+||||||+||||++|+++|+++| ++|+++++............+++++.+|+++.+.+.+ +++++|+|||+|+... 
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~~~   80 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATP   80 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccccccc
Confidence            589999999999999999999999 4899998865543333345689999999988765554 6778999999999654 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchhhhHHhhHHHH
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~-----------------~~~~~Y~~sK~~~E~~~  190 (200)
                           .+...+++|+.|+.+++++|.+.+.+ ++++|| ..|+...                 .|...|+.+|..+|+++
T Consensus        81 ~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~-~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~  159 (342)
T d2blla1          81 IEYTRNPLRVFELDFEENLRIIRYCVKYRKR-IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVI  159 (342)
T ss_dssp             HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCE-EEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             cccccCCcccccccccccccccccccccccc-ccccccccccccccccccccccccccccccCCCcchhhhcccchhhhh
Confidence                 33467899999999999999998874 456665 4444321                 23467999999999999


Q ss_pred             Hhhc
Q 029008          191 LACY  194 (200)
Q Consensus       191 ~~~~  194 (200)
                      +.+.
T Consensus       160 ~~~~  163 (342)
T d2blla1         160 WAYG  163 (342)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            8753

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.2e-22  Score=159.04  Aligned_cols=139  Identities=23%  Similarity=0.288  Sum_probs=112.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------------cccCCCCeeEEEccCCCHHHHHHHhcC-
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------------RDSWANNVIWHQGNLLSSDSWKEALDG-  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~~~Dl~d~~~~~~~~~~-  121 (200)
                      |.||||||||+||||++|+++|+++|++|+++++......            ......++.++.+|++|.+.+.+++.+ 
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   80 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccc
Confidence            4579999999999999999999999999999986322110            011246789999999999999998864 


Q ss_pred             -CCEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcC-----------CcCCcchhhh
Q 029008          122 -VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVA-----------NYLLQGYYEG  182 (200)
Q Consensus       122 -~d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~-----------~~~~~~Y~~s  182 (200)
                       +++++|+|+...      ++...+++|+.++.++++++++.++++||++||+ .|+..           ..+.++|+.+
T Consensus        81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~  160 (346)
T d1ek6a_          81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKS  160 (346)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHH
T ss_pred             ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccccccccCChHHHH
Confidence             568999998643      3456789999999999999999999999999984 34432           2456789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |..+|+.++++
T Consensus       161 k~~~e~~~~~~  171 (346)
T d1ek6a_         161 KFFIEEMIRDL  171 (346)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=1.5e-22  Score=156.54  Aligned_cols=141  Identities=19%  Similarity=0.199  Sum_probs=114.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ..++|+++||||+++||+++++.|+++|++|++.+|+.++..+  .....++.++.+|++|+++++++++       .+|
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            3578999999999999999999999999999999998654211  1223578899999999999887765       589


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ++|||||...          .|+..+++|+.+++.+.+++    ++++..+||++||.....+.+....|+.+|++++.+
T Consensus        83 ilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~l  162 (244)
T d1nffa_          83 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGL  162 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHH
T ss_pred             EEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccccccchhhHHHHHHHH
Confidence            9999999642          35678899999999888765    444567999999965445556678999999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       163 tk~l  166 (244)
T d1nffa_         163 TKST  166 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.3e-22  Score=160.15  Aligned_cols=123  Identities=20%  Similarity=0.229  Sum_probs=102.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~  133 (200)
                      .|+||||||+||||++|+++|+++|+.|+++++..+               +|+.|.+.+.++++  .+|.|+|+++...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~v~~~a~~~~   66 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE---------------LNLLDSRAVHDFFASERIDQVYLAAAKVG   66 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh---------------ccccCHHHHHHHHhhcCCCEEEEcchhcc
Confidence            579999999999999999999999999887765421               48999999998876  5899999987543


Q ss_pred             -------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------cCCcchhhhHHhhHHHH
Q 029008          134 -------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------YLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       134 -------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~~---------------~~~~~Y~~sK~~~E~~~  190 (200)
                             .....+++|+.++.+++++|.+.++++|||+|| .+||...               ++.++|+.+|.++|+++
T Consensus        67 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~  146 (315)
T d1e6ua_          67 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLC  146 (315)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHHHH
Confidence                   234567899999999999999999999999999 5566321               22357999999999999


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +++
T Consensus       147 ~~~  149 (315)
T d1e6ua_         147 ESY  149 (315)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.9e-22  Score=156.47  Aligned_cols=139  Identities=16%  Similarity=0.077  Sum_probs=112.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++|+++||||+++||+++++.|+++|++|++.+|+.+.. +.....+..++++|++|+++++++++       ++|++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGK-EVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHH-HHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            4789999999999999999999999999999999986542 11112356789999999998887765       589999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          +|+..+++|+.+++++.+++.    +++..+||++||...-.+.+....|+.+|++++.+.+.
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~ltk~  161 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRS  161 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHHHHHHHHHH
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence            9999542          346688999999998888774    44566999999965455566778999999999999886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       162 l  162 (248)
T d2d1ya1         162 L  162 (248)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.87  E-value=3.3e-22  Score=160.02  Aligned_cols=138  Identities=21%  Similarity=0.235  Sum_probs=111.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEee------cCCCC-----cccccCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLS------RSGRS-----SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~------r~~~~-----~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      |+|+||||+||||++|+++|+++|++|.+++      +....     ........+++++.+|+.+..........+|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            5899999999999999999999998765433      22111     111122458999999999999999999999999


Q ss_pred             EEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhHH
Q 029008          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNLS  188 (200)
Q Consensus       126 i~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E~  188 (200)
                      +|+|+...      .+...+++|+.++.+++++|.+.++++||++|| ..|+..          ..|.+.|+.+|.++|.
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~  160 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDL  160 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            99997643      456678999999999999999999999999999 456543          2456789999999999


Q ss_pred             HHHhhc
Q 029008          189 PLLACY  194 (200)
Q Consensus       189 ~~~~~~  194 (200)
                      +++.+.
T Consensus       161 ~~~~~~  166 (322)
T d1r6da_         161 VARAYH  166 (322)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.87  E-value=2.8e-22  Score=155.93  Aligned_cols=140  Identities=15%  Similarity=0.162  Sum_probs=114.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .++|+++||||+++||.+++++|+++|++|++.+|+.++..+  .....++.++++|++|+++++++++       ++|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccE
Confidence            578999999999999999999999999999999998654221  1223578999999999999988765       5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .|+..+++|+.+++.+.+++    ++++..+||++||...-.+.+....|+.+|++++.+.
T Consensus        83 lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt  162 (254)
T d1hdca_          83 LVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLS  162 (254)
T ss_dssp             EEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHH
T ss_pred             EEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccchhhHHHHHHHHHHHH
Confidence            999999642          34567899999999888876    3456679999999654455566789999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       163 ~~l  165 (254)
T d1hdca_         163 KLA  165 (254)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.2e-22  Score=154.74  Aligned_cols=142  Identities=12%  Similarity=0.051  Sum_probs=114.6

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ....+|+++||||+++||++++++|+++|++|++.+|+.++..+     .....++..+.+|++|+++++++++      
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            44689999999999999999999999999999999998654211     1224578999999999999888765      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                       .+|++|||||...          .++..+++|+.+++.+.+++    .+++.++||++||...-.+.+....|+.||++
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  162 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFA  162 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHHHH
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCCcHHHHHHHHH
Confidence             5899999999642          24568899999999887765    45667799999996545555666789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       163 l~~~~~~L  170 (244)
T d1yb1a_         163 AVGFHKTL  170 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988863

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=4.7e-22  Score=154.45  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=112.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+++||+++++.|+++|++|++++|+.++..+      .....++.++.+|++|+++++++++       
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999998654211      1224578899999999999888765       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCc-CCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGV-ANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~-~~~~~~~Y~~sK~~  185 (200)
                      ++|++|||||...          .|+..+++|+.+++.+.+++.    +++..++|++||..... +.+....|+.+|++
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~~~~Y~asKaa  162 (251)
T d1vl8a_          83 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGG  162 (251)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCccccchHHHHHh
Confidence            5899999999532          346678999999998888764    44566999999854433 44556789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       163 l~~lt~~l  170 (251)
T d1vl8a_         163 VASLTKAL  170 (251)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.86  E-value=3.6e-22  Score=155.55  Aligned_cols=140  Identities=11%  Similarity=0.108  Sum_probs=113.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .++|+++||||+++||+++++.|+++|++|++.+|+.+...+  .....++.++.+|++|+++++++++       ++|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            568999999999999999999999999999999998654211  1224678999999999999998775       5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHH----Hc-CCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAAS----EK-GVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~-~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||||...          .|+..+++|+.+++.+.+++.    +. ...+||++||...-.+.+....|+.+|++++.+
T Consensus        83 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l  162 (256)
T d1k2wa_          83 LVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISL  162 (256)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccccchhhhhhHHHHH
Confidence            999999642          346678999999998887653    22 346999999965455666778999999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       163 t~~l  166 (256)
T d1k2wa_         163 TQSA  166 (256)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8863

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.86  E-value=3.2e-22  Score=156.16  Aligned_cols=140  Identities=15%  Similarity=0.163  Sum_probs=113.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++|+++||||+++||++++++|+++|++|++.+|+.....+       .....++.++.+|++|+++++++++      
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            368999999999999999999999999999999997543211       1124578899999999999988775      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                       ++|++|||||...          +|+..+++|+.+++.+.+++    ++++..+||++||...-.+.+....|+.+|++
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  161 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHG  161 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccCCcchhhhhhhh
Confidence             5899999999542          34678899999998877765    45566799999996544555667889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       162 l~~lt~~l  169 (260)
T d1x1ta1         162 VVGFTKVT  169 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhHHHH
Confidence            99998864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.3e-22  Score=156.86  Aligned_cols=140  Identities=17%  Similarity=0.083  Sum_probs=113.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .++|+++||||+++||+++++.|+++|++|++.+|+++...+  .....++..+.+|++|+++++++++       ++|+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcce
Confidence            468999999999999999999999999999999998654211  1123568889999999999888775       5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...          .|+..+++|+.+++.+.+++    ++++.++||++||...-.+.+....|+.+|++++.+.
T Consensus        82 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt  161 (243)
T d1q7ba_          82 LVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFS  161 (243)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred             ehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHHHHHHHH
Confidence            999998542          34667899999999888876    4456679999999543445566789999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       162 ~~l  164 (243)
T d1q7ba_         162 KSL  164 (243)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.86  E-value=8.1e-22  Score=153.66  Aligned_cols=140  Identities=12%  Similarity=0.062  Sum_probs=113.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++|+++||||+++||+++++.|+++|++|++.+|+.+...+       .....++.++.+|++|+++++++++      
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999998654211       1123478899999999999988764      


Q ss_pred             -CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 -GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 -~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                       ++|++|||||...           +|+..+++|+.+++.+.+++    ++.+.++||++||...-.+.+....|+.+|+
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKa  161 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKH  161 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHHH
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCCchHHHHHHH
Confidence             5899999999532           34567899999999888876    3456679999999654455667789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       162 al~~lt~~l  170 (258)
T d1iy8a_         162 GVVGLTRNS  170 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998863

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.86  E-value=6.9e-22  Score=153.50  Aligned_cols=140  Identities=16%  Similarity=0.169  Sum_probs=112.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc----cccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..++|+++||||+++||+++++.|+++|++|++.+|+.+...    +.....++.++.+|++|+++++++++       +
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            367899999999999999999999999999999999764321    11224578999999999999887765       5


Q ss_pred             CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcCCC-EEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVK-RFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~-~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||||...          +|+..+++|+.+++.+.+++.    +++.+ +||++||...-.+.+....|+.+|+++
T Consensus        83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~~~Y~asKaal  162 (251)
T d1zk4a1          83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAV  162 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCchhHHHHHHHH
Confidence            899999999642          345688999999998888764    34443 899999965444556678999999999


Q ss_pred             HHHHHh
Q 029008          187 LSPLLA  192 (200)
Q Consensus       187 E~~~~~  192 (200)
                      +.+.+.
T Consensus       163 ~~lt~~  168 (251)
T d1zk4a1         163 RIMSKS  168 (251)
T ss_dssp             HHHHHH
T ss_pred             hcchHH
Confidence            988775

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.86  E-value=2.8e-22  Score=161.87  Aligned_cols=140  Identities=24%  Similarity=0.268  Sum_probs=110.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      +.+|+||||||+||||++|+++|+++|++|++++|+.++...       ........++.+|+.|.+.+.+++.++|.++
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            468999999999999999999999999999999997543110       1112334568899999999999999999999


Q ss_pred             EccccCC---CCcccchhhHHHHHHHHHHHHHc-CCCEEEEEeccc--cC-c----------------------------
Q 029008          127 SCVGGFG---SNSYMYKINGTANINAIRAASEK-GVKRFVYISAAD--FG-V----------------------------  171 (200)
Q Consensus       127 ~~ag~~~---~~~~~~~~n~~~~~~~~~~a~~~-~~~~~v~vSS~~--~~-~----------------------------  171 (200)
                      |+++...   .+...+.+|+.|+.+++++|.+. ++++||++||..  ++ .                            
T Consensus        89 ~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~  168 (342)
T d1y1pa1          89 HIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESD  168 (342)
T ss_dssp             ECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTS
T ss_pred             hhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccccccccC
Confidence            9998644   33456788999999999999886 689999999942  11 1                            


Q ss_pred             CCcCCcchhhhHHhhHHHHHhh
Q 029008          172 ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 ~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +..+..+|+.+|..+|++++.+
T Consensus       169 ~~~p~~~Y~~sK~~~E~~~~~~  190 (342)
T d1y1pa1         169 PQKSLWVYAASKTEAELAAWKF  190 (342)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCcccchhHhHHHHHHHh
Confidence            1123357999999999988765

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=7.4e-22  Score=152.51  Aligned_cols=139  Identities=13%  Similarity=0.055  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi  126 (200)
                      .++|+++||||+++||.++++.|+++|++|++++|+.++..+....-+++++.+|++|+++++++++       ++|++|
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            5689999999999999999999999999999999986543222223467899999999999988765       589999


Q ss_pred             EccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          127 SCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       127 ~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      ||||...          .|+..+++|+.+++.+.+++.+    .+...++++||. ...+.+....|+.+|++++.+.+.
T Consensus        83 nnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~-~~~~~~~~~~Y~asKaal~~ltk~  161 (242)
T d1ulsa_          83 HYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR-VYLGNLGQANYAASMAGVVGLTRT  161 (242)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG-GGGCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccc-cccCCCCCcchHHHHHHHHHHHHH
Confidence            9999642          3567889999999988887643    344467777764 344555678999999999999886


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       162 l  162 (242)
T d1ulsa_         162 L  162 (242)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.86  E-value=3.2e-22  Score=155.36  Aligned_cols=142  Identities=15%  Similarity=0.083  Sum_probs=114.4

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ...++|+++||||+++||+++++.|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++      
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            34578999999999999999999999999999999997644211     1224578999999999999988775      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                       ++|++|||||...          +|+..+++|+.+++.+.+++    ++++.++||++||...-.+.+....|+.+|++
T Consensus        86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaa  165 (251)
T d2c07a1          86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAG  165 (251)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHH
T ss_pred             CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHHHHH
Confidence             5899999999532          35678899999998887765    45566799999996444455667799999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       166 l~~ltr~l  173 (251)
T d2c07a1         166 VIGFTKSL  173 (251)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.86  E-value=8.8e-22  Score=153.53  Aligned_cols=142  Identities=20%  Similarity=0.075  Sum_probs=114.3

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      +..++|+++||||+++||+++++.|+++|++|++.+|+.++..+     .....++.++.+|++|+++++++++      
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            34689999999999999999999999999999999997654211     1123578899999999988887653      


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                        .+|++|||||...          +|+..+++|+.+++.+.+++    ++.+.++||++||.....+.+....|+.+|+
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKa  163 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKG  163 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccccccchHHHHH
Confidence              4899999999532          34678899999999887776    4445679999999655556667789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       164 al~~lt~~l  172 (259)
T d2ae2a_         164 AMDQLTRCL  172 (259)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=8.9e-22  Score=152.07  Aligned_cols=140  Identities=14%  Similarity=0.040  Sum_probs=113.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-ccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~a  129 (200)
                      .++|+++||||+++||++++++|+++|++|++++|+.++..+ .....++..+.+|++|++.++++++   ++|++||||
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnA   82 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA   82 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECC
Confidence            578999999999999999999999999999999998654211 1123478899999999999999887   479999999


Q ss_pred             ccCC----------CCcccchhhHHHHHHHHHHHHH-----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          130 GGFG----------SNSYMYKINGTANINAIRAASE-----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       130 g~~~----------~~~~~~~~n~~~~~~~~~~a~~-----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...          .|+..+++|+.+++.+.+++.+     .+..++|++||.....+.+....|+.+|++++.+.+..
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~l  161 (242)
T d1cyda_          83 ALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAM  161 (242)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccchHHHHHHHHHHH
Confidence            9642          3466789999999988876532     23458999999655555566788999999999998864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=9.7e-22  Score=161.24  Aligned_cols=138  Identities=14%  Similarity=0.200  Sum_probs=105.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC----------CCC--cc----------cccCCCCeeEEEccCCCHH
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRS----------GRS--SL----------RDSWANNVIWHQGNLLSSD  113 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~----------~~~--~~----------~~~~~~~~~~~~~Dl~d~~  113 (200)
                      +|+||||||+||||++|+++|+++||+|++++.-          ...  ..          ......+++++.+|++|.+
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   80 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   80 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence            5899999999999999999999999999998621          000  00          0011357899999999999


Q ss_pred             HHHHHhc--CCCEEEEccccCC------C---CcccchhhHHHHHHHHHHHHHcCCC-EEEEEecc-ccCc---------
Q 029008          114 SWKEALD--GVTAVISCVGGFG------S---NSYMYKINGTANINAIRAASEKGVK-RFVYISAA-DFGV---------  171 (200)
Q Consensus       114 ~~~~~~~--~~d~vi~~ag~~~------~---~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS~-~~~~---------  171 (200)
                      .++++++  ++|+|||+|+...      +   +...+++|+.|+.+++++|++.+++ ++++.||. .|+.         
T Consensus        81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~  160 (393)
T d1i24a_          81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY  160 (393)
T ss_dssp             HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred             HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccccccccc
Confidence            9999997  4699999998532      1   1245789999999999999998866 56666664 3332         


Q ss_pred             --------------CCcCCcchhhhHHhhHHHHHhh
Q 029008          172 --------------ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 --------------~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                    +..|.+.|+.+|..+|.++..+
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~  196 (393)
T d1i24a_         161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFT  196 (393)
T ss_dssp             EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccHHHHHhhhhccccccc
Confidence                          1234567999999999998765

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.8e-22  Score=153.85  Aligned_cols=140  Identities=13%  Similarity=0.135  Sum_probs=113.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+++||.+++++|+++|++|++++|+.++..+     .....++.++++|++|+++++++++       +
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999997644211     1224578999999999999887765       5


Q ss_pred             CCEEEEccccCC---------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHH
Q 029008          122 VTAVISCVGGFG---------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLS  188 (200)
Q Consensus       122 ~d~vi~~ag~~~---------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~  188 (200)
                      +|++|||||...         +|+..+++|+.+++.+.+++    ++.+..++|++||.....+.+....|+.+|++++.
T Consensus        89 iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~  168 (255)
T d1fmca_          89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASH  168 (255)
T ss_dssp             CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHH
T ss_pred             CCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccccccccchhHHHHHHH
Confidence            899999999642         34667899999999887766    34456689999996545556677899999999999


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +.+..
T Consensus       169 lt~~l  173 (255)
T d1fmca_         169 LVRNM  173 (255)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98863

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.86  E-value=8.7e-22  Score=153.40  Aligned_cols=139  Identities=18%  Similarity=0.103  Sum_probs=113.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~  122 (200)
                      .+|+++||||+++||+++++.|+++|++|++.+|+.+...+     .....++.++++|++|+++++++++       ++
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            36889999999999999999999999999999998543211     1224578999999999999988765       58


Q ss_pred             CEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH------cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASE------KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       123 d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~------~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      |++|||||...          .|+..+++|+.+++.+.+++.+      .+..+||++||...-.+.+....|+++|+++
T Consensus        81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~asKaal  160 (257)
T d2rhca1          81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV  160 (257)
T ss_dssp             SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHHHHHH
Confidence            99999999532          3467889999999999998754      3456899999965455566778999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       161 ~~ltk~l  167 (257)
T d2rhca1         161 VGFTKAL  167 (257)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=1.1e-21  Score=152.89  Aligned_cols=143  Identities=14%  Similarity=0.083  Sum_probs=108.5

Q ss_pred             CCCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           51 VPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        51 ~~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      .++.++|+++||||+++||.++++.|+++|++|++++|+.++..+     .....++..+.+|++|+++++++++     
T Consensus         3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence            355689999999999999999999999999999999998654211     1224578999999999988877653     


Q ss_pred             ---CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 ---GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 ---~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                         .+|++|||||...          +|+..+++|+.+++.+.+++    ++.+..+||++||...-.+.+....|+.+|
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asK  162 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATK  162 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHHH
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccccccccccccc
Confidence               3899999999532          35678899999999888776    445667999999965445556678899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+.+..
T Consensus       163 aal~~lt~~l  172 (259)
T d1xq1a_         163 GALNQLARNL  172 (259)
T ss_dssp             HHHHHHHHHH
T ss_pred             cchhhhhHHH
Confidence            9999998863

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.86  E-value=1.9e-21  Score=155.55  Aligned_cols=136  Identities=19%  Similarity=0.269  Sum_probs=107.6

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVG  130 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~ag  130 (200)
                      |||||||+||||++|+++|+++|++|+++++-......     .....+++++.+|++|.+.+.+++++  +|+|||+|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            79999999999999999999999999998754332111     12246899999999999999999875  699999998


Q ss_pred             cCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cc-cCcC--------------------------CcCC
Q 029008          131 GFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-AD-FGVA--------------------------NYLL  176 (200)
Q Consensus       131 ~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~-~~~~--------------------------~~~~  176 (200)
                      ...      ++...+++|+.|+.++++++.+.+++++|+.|| .. ++.+                          ..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (338)
T d1orra_          82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFH  161 (338)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCCC
T ss_pred             cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCccccc
Confidence            754      346778999999999999999999887666666 32 2211                          1245


Q ss_pred             cchhhhHHhhHHHHHhh
Q 029008          177 QGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       177 ~~Y~~sK~~~E~~~~~~  193 (200)
                      +.|+.+|...|.++...
T Consensus       162 ~~y~~~k~~~e~~~~~~  178 (338)
T d1orra_         162 SPYGCSKGAADQYMLDY  178 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhh
Confidence            67999999999987764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=4.2e-21  Score=153.01  Aligned_cols=137  Identities=18%  Similarity=0.156  Sum_probs=109.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhcC--CCEEEEcc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCV  129 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~a  129 (200)
                      |+||||||+||||++|+++|+++||+|++++|.......     .....+++++.+|++|.+.+.+.+..  .++++|++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~a   80 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLA   80 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccccc
Confidence            689999999999999999999999999999997654221     11235799999999999999987764  67888888


Q ss_pred             ccCC------CCcccchhhHHHHHHHHHHHHHcCCC-EEEEEecc-ccCcC----------CcCCcchhhhHHhhHHHHH
Q 029008          130 GGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISAA-DFGVA----------NYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       130 g~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS~-~~~~~----------~~~~~~Y~~sK~~~E~~~~  191 (200)
                      +...      .+...+++|+.|+.+++++|++.+.+ +|++.||. .|+..          ..+.+.|+.+|.++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~  160 (321)
T d1rpna_          81 AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITV  160 (321)
T ss_dssp             SCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHH
T ss_pred             ccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHHHHHHHHHHHH
Confidence            7532      34566899999999999999998865 77777774 34322          1356899999999999998


Q ss_pred             hh
Q 029008          192 AC  193 (200)
Q Consensus       192 ~~  193 (200)
                      ++
T Consensus       161 ~~  162 (321)
T d1rpna_         161 NY  162 (321)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.85  E-value=1.1e-21  Score=153.13  Aligned_cols=140  Identities=14%  Similarity=0.106  Sum_probs=112.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+...+     .....++.++.+|++|+++++++++       +
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999998643211     1224578999999999998888765       5


Q ss_pred             CCEEEEccccCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       122 ~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      +|++|||||...           .|+..+++|+.+++.+.+++    .+++..+||++||...-.+.+....|+.+|+++
T Consensus        83 iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal  162 (260)
T d1zema1          83 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAI  162 (260)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHHHHH
T ss_pred             CCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCcchHHHHHHHHHH
Confidence            899999999532           24567899999999887776    344567999999954334455667899999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       163 ~~ltk~l  169 (260)
T d1zema1         163 IALTETA  169 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=150.81  Aligned_cols=140  Identities=14%  Similarity=0.001  Sum_probs=112.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-ccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~a  129 (200)
                      .++|+++||||+++||+++++.|+++|++|++++|+.++..+ .....++..+.+|++|+++++++++   ++|++||||
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA   84 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence            578999999999999999999999999999999998654211 1112468889999999999999887   579999999


Q ss_pred             ccCC----------CCcccchhhHHHHHHHHHHHHH-----cCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          130 GGFG----------SNSYMYKINGTANINAIRAASE-----KGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       130 g~~~----------~~~~~~~~n~~~~~~~~~~a~~-----~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      |...          +|+..+++|+.+++.+.+++.+     .+..+||++||.....+.+....|+.+|++++.+.+..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~l  163 (244)
T d1pr9a_          85 AVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVM  163 (244)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhhhhHHHHHHHHHHH
Confidence            9642          3466789999999988776532     34569999999654455566788999999999998863

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.3e-22  Score=153.24  Aligned_cols=141  Identities=13%  Similarity=0.118  Sum_probs=112.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      ..++|+++||||+++||+++++.|+++|++|++++|+.+...+ .....++.++.+|++|+++++++++       ++|+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi   82 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDC   82 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            3578999999999999999999999999999999998654211 1123578899999999999988765       5899


Q ss_pred             EEEccccCC-----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          125 VISCVGGFG-----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       125 vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      +|||||...           .|+..+++|+.+++.+.+++.+.   +..++|++||.....+.+....|+.+|++++.+.
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt  162 (250)
T d1ydea1          83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMT  162 (250)
T ss_dssp             EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred             EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccccCcchhHHHHhhHHHHH
Confidence            999999532           24567899999999888876422   2369999999644445566789999999999998


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       163 ~~l  165 (250)
T d1ydea1         163 KAL  165 (250)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.85  E-value=7.3e-21  Score=155.52  Aligned_cols=138  Identities=19%  Similarity=0.223  Sum_probs=109.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHH-CCCcEEEeecCCCC-----c-----------------ccccCCCCeeEEEccCCCH
Q 029008           56 SEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRS-----S-----------------LRDSWANNVIWHQGNLLSS  112 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~r~~~~-----~-----------------~~~~~~~~~~~~~~Dl~d~  112 (200)
                      .|+||||||+||||++|+++|++ .|++|+++++-...     .                 ........+.++.+|++|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            45999999999999999999986 68999998742110     0                 0011234688999999999


Q ss_pred             HHHHHHhc---CCCEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCc-----------
Q 029008          113 DSWKEALD---GVTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGV-----------  171 (200)
Q Consensus       113 ~~~~~~~~---~~d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~-----------  171 (200)
                      +.++++++   ++|+|||+|+...      .+...+++|+.++.++++++++.+++++++.|+. .|+.           
T Consensus        82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  161 (383)
T d1gy8a_          82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE  161 (383)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred             HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence            99999885   5799999998653      3345678999999999999999999999999874 3331           


Q ss_pred             ------CCcCCcchhhhHHhhHHHHHhh
Q 029008          172 ------ANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       172 ------~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                            +..|.+.|+.+|...|.+++++
T Consensus       162 ~~~e~~~~~p~~~Y~~sK~~~e~~~~~~  189 (383)
T d1gy8a_         162 PIDINAKKSPESPYGESKLIAERMIRDC  189 (383)
T ss_dssp             CBCTTSCCBCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHhhHhHHHHHHHHH
Confidence                  1245688999999999999875

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.85  E-value=2.1e-21  Score=151.49  Aligned_cols=140  Identities=13%  Similarity=0.073  Sum_probs=112.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+++||.+++++|+++|++|++.+|+.++..+      .....++.++++|++|+++++++++       
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999998643211      1224578899999999999888775       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCC-CEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGV-KRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~-~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      ++|++|||||...          +|+..+++|+.+++.+.+++    .+++. .+||++||.....+.+....|+.+|++
T Consensus        85 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~~~Y~asKaa  164 (261)
T d1geea_          85 KLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGG  164 (261)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccccccccCCcc
Confidence            5899999999643          34677899999999887775    34443 468999996544555667889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       165 l~~lt~~l  172 (261)
T d1geea_         165 MKLMTETL  172 (261)
T ss_dssp             HHHHHHHH
T ss_pred             chhhHHHH
Confidence            99998864

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.85  E-value=2.8e-21  Score=150.33  Aligned_cols=137  Identities=18%  Similarity=0.165  Sum_probs=109.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      |.++||||+++||++++++|+++|++|++.+|+.++..+     .....++.++.+|++|+++++++++       ++|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            567999999999999999999999999999998654211     1124578899999999999888765       5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~-~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      +|||||...          .|+..+++|+.+++.+.+++.    +.+ ..+||++||...-.+.+....|+.+|++++.+
T Consensus        82 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l  161 (255)
T d1gega_          82 IVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGL  161 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHH
T ss_pred             EEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhCHHHHHhh
Confidence            999999532          346788999999998888753    333 45799999865445566678899999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       162 tk~l  165 (255)
T d1gega_         162 TQTA  165 (255)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8863

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.85  E-value=4.7e-21  Score=150.05  Aligned_cols=141  Identities=12%  Similarity=0.108  Sum_probs=110.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------C
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~  121 (200)
                      ..++|+++||||+++||.+++++|+++|++|++++|+.++..+    ......+.++.+|++|+++++++++       +
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999999997644211    1123568889999999999988775       5


Q ss_pred             CCEEEEccccCC------------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcC-CcchhhhHH
Q 029008          122 VTAVISCVGGFG------------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYL-LQGYYEGKD  184 (200)
Q Consensus       122 ~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~-~~~Y~~sK~  184 (200)
                      +|++|||||...            .|+..+++|+.+++.+.+++.    +++..++|++||........+ ...|+++|+
T Consensus        83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~~~~Y~asKa  162 (268)
T d2bgka1          83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKH  162 (268)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHHHH
T ss_pred             cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccccccccchhHH
Confidence            899999999532            234578999999998887763    445669999998543333333 347999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       163 al~~lt~~l  171 (268)
T d2bgka1         163 AVLGLTTSL  171 (268)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHhCHHHH
Confidence            999998863

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.6e-21  Score=150.41  Aligned_cols=138  Identities=12%  Similarity=0.079  Sum_probs=110.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .+|+++||||+++||+++++.|+++|++|++++|+.++..+       .....++.++.+|++|+++++++++       
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            47999999999999999999999999999999998654111       1123478899999999999888775       


Q ss_pred             CCCEEEEccccC--CCCcccchhhHHHHHHHHHHHH----HcC---CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHH
Q 029008          121 GVTAVISCVGGF--GSNSYMYKINGTANINAIRAAS----EKG---VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLL  191 (200)
Q Consensus       121 ~~d~vi~~ag~~--~~~~~~~~~n~~~~~~~~~~a~----~~~---~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (200)
                      ++|++|||||..  .+|+..+++|+.+++.+.+++.    +++   ..+||++||...-.+.+....|+++|++++.+.+
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltr  161 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTR  161 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHH
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCccchHHHHHHHHHHHH
Confidence            589999999975  3678889999999887766663    322   2479999996544555667889999999999887


Q ss_pred             h
Q 029008          192 A  192 (200)
Q Consensus       192 ~  192 (200)
                      .
T Consensus       162 s  162 (254)
T d2gdza1         162 S  162 (254)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.84  E-value=2e-21  Score=151.04  Aligned_cols=140  Identities=15%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ..++|+++||||+++||.++++.|+++|++|++.+|+.+...+  .....+..++.+|++|+++++++++       ++|
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            3578999999999999999999999999999999997644211  1224578899999999998887765       589


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                      ++|||||...          +|+..+++|+.+++.+.+++.+.   ...+||++||.....+.+....|+.+|++++.+.
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt  162 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALT  162 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCccccccccchhHHHHHHH
Confidence            9999999642          34678899999999888876432   2368999999654455566789999999999988


Q ss_pred             Hh
Q 029008          191 LA  192 (200)
Q Consensus       191 ~~  192 (200)
                      +.
T Consensus       163 ~~  164 (253)
T d1hxha_         163 RA  164 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.84  E-value=2.7e-21  Score=149.18  Aligned_cols=137  Identities=12%  Similarity=0.028  Sum_probs=109.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCc-------EEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc----
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLT-------VASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      +.|+||||+++||++++++|+++|++       |++.+|+.++..+     .....++.++.+|++|+++++++++    
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35899999999999999999999998       7888887544211     1123578899999999999888765    


Q ss_pred             ---CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 ---GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 ---~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                         ++|++|||||...          .|+..+++|+.+++.+.+++    ++++.+++|++||...-.+.+....|+++|
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asK  161 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSK  161 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCChHHHHHH
Confidence               5899999999642          34678899999999887776    455667999999965455556678999999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+.+..
T Consensus       162 ~al~~lt~~l  171 (240)
T d2bd0a1         162 FGQRGLVETM  171 (240)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988863

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.84  E-value=1.5e-21  Score=150.98  Aligned_cols=137  Identities=15%  Similarity=0.113  Sum_probs=109.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      +.++||||+++||++++++|+++|++|++.+++.++..+      .....++.++++|++|+++++++++       ++|
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            589999999999999999999999999987665433211      1124578899999999999988765       589


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHH
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~  189 (200)
                      ++|||||...          .|+..+++|+.+++.+.+++    ++++..+||++||...-.+.+....|+.+|++++.+
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~l  161 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGF  161 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCCHHHHHHHHHHHHC
Confidence            9999999542          35678899999999887776    445667999999964334555678999999999999


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      .+..
T Consensus       162 tk~l  165 (244)
T d1edoa_         162 SKTA  165 (244)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            8864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=1.2e-20  Score=151.30  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=107.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc-----------ccccCCCCeeEEEccCCCHHHHHHHhc--CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------LRDSWANNVIWHQGNLLSSDSWKEALD--GV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~  122 (200)
                      .|++|||||+||||++|+++|+++||+|++++|..+..           ........+.++.+|+.+.+.+.+.++  ++
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~   80 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP   80 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence            47999999999999999999999999999999964321           001123468899999999999999886  67


Q ss_pred             CEEEEccccCC------CCcccchhhHHHHHHHHHHHHHcC-----CCEEEEEeccc-cCcC---------CcCCcchhh
Q 029008          123 TAVISCVGGFG------SNSYMYKINGTANINAIRAASEKG-----VKRFVYISAAD-FGVA---------NYLLQGYYE  181 (200)
Q Consensus       123 d~vi~~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~-----~~~~v~vSS~~-~~~~---------~~~~~~Y~~  181 (200)
                      |+|||+|+...      .+...+++|+.++.+++++++..+     ..++++.||.. ++..         ..|.+.|+.
T Consensus        81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~~~~~p~~~Y~~  160 (339)
T d1n7ha_          81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAA  160 (339)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCSHHHH
T ss_pred             chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCCCCCCCcchhhH
Confidence            99999998643      445678899999999999986542     34677777743 3321         246789999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|.+.|+++..+
T Consensus       161 sK~~~E~~~~~~  172 (339)
T d1n7ha_         161 SKCAAHWYTVNY  172 (339)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.83  E-value=2.2e-20  Score=145.13  Aligned_cols=140  Identities=16%  Similarity=0.065  Sum_probs=111.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCC-CHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLL-SSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~-d~~~~~~~~~------  120 (200)
                      .++|+++||||+++||.+++++|+++|++|+++.|+.++...      .....++.++.+|++ +.++++++++      
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999999888765321      112347889999997 5556666554      


Q ss_pred             -CCCEEEEccccCC--CCcccchhhHHHHHHHHHHHHHc-------CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          121 -GVTAVISCVGGFG--SNSYMYKINGTANINAIRAASEK-------GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       121 -~~d~vi~~ag~~~--~~~~~~~~n~~~~~~~~~~a~~~-------~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                       ++|++|||||...  .|+..+++|+.+++++.+++.+.       ...+||++||...-.+.+....|+++|+++..+.
T Consensus        83 g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~~t  162 (254)
T d1sbya1          83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFT  162 (254)
T ss_dssp             SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCCHHHHHHHHHHHHHH
Confidence             6899999999754  67889999999999888876432       2357999999654456667789999999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       163 ~~l  165 (254)
T d1sbya1         163 NSL  165 (254)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.83  E-value=6.3e-21  Score=149.95  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=111.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .++|+++||||+++||+++++.|+++|++|++++|+.++..+  .....++..+.+|++|+++++++++       .+|+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            578999999999999999999999999999999998654221  1123578999999999998888764       5899


Q ss_pred             EEEccccCC---------------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          125 VISCVGGFG---------------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       125 vi~~ag~~~---------------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                      +|||||...               .|+..+++|+.+++.+.+++.    +.+ .++|+++|.....+.+....|+.+|++
T Consensus        83 lvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~~~~~~Y~asKaa  161 (276)
T d1bdba_          83 LIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPNGGGPLYTAAKHA  161 (276)
T ss_dssp             EECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTTSSCHHHHHHHHH
T ss_pred             ccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCCCCCchHHHHHHH
Confidence            999999532               145678999999998877763    333 689999986444555667789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       162 l~~ltr~l  169 (276)
T d1bdba_         162 IVGLVREL  169 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998863

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.83  E-value=1.7e-20  Score=146.15  Aligned_cols=142  Identities=17%  Similarity=0.063  Sum_probs=114.4

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      +..++|+++||||+++||++++++|+++|++|++++|++++..+     ......+.++.+|++|+++++++++      
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            34678999999999999999999999999999999998644211     1224578899999999998887664      


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                        .+|++|||||...          +|+..+++|+.+++.+.+++    .+.+..++|++||.....+.+....|+.+|+
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~  161 (258)
T d1ae1a_          82 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKG  161 (258)
T ss_dssp             TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence              3799999999643          34667899999999887765    3446679999999655556667789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       162 al~~lt~~l  170 (258)
T d1ae1a_         162 AINQMTKSL  170 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=1.6e-20  Score=147.37  Aligned_cols=141  Identities=13%  Similarity=0.062  Sum_probs=108.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhc----
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      ..++|+++||||+++||+++++.|+++|++|++++|+.++..+      ..  ...++.++.+|++|+++++++++    
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999998653111      11  12368899999999999888775    


Q ss_pred             ---CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEecccc-CcCCcCCcch
Q 029008          121 ---GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADF-GVANYLLQGY  179 (200)
Q Consensus       121 ---~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~-~~~~~~~~~Y  179 (200)
                         ++|++|||||...              .|+..+++|+.+++.+.+++.+.   +...+|+++|+.. -.+.+....|
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~~~~~Y  161 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYY  161 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCSSHHH
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCCCCcchh
Confidence               5899999999532              13456789999999888876432   2346666666432 3345567789


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +.+|++++.+.+..
T Consensus       162 ~asKaal~~ltk~l  175 (272)
T d1xkqa_         162 AIAKAALDQYTRST  175 (272)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999998863

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.82  E-value=1e-19  Score=146.70  Aligned_cols=139  Identities=16%  Similarity=0.128  Sum_probs=110.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      ++|+||||||+||||++|+++|+++|++|++++|.......    .....+++++.+|++|++.+.++++  .+|+|+|+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~   86 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   86 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhh
Confidence            67999999999999999999999999999999998765322    1224579999999999999999887  57999999


Q ss_pred             cccCC------CCcccchhhHHHHHHHHHHHHHcCCC-EEEEEeccc-cCc-----------CCcCCcchhhhHHhhHHH
Q 029008          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISAAD-FGV-----------ANYLLQGYYEGKDSNLSP  189 (200)
Q Consensus       129 ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS~~-~~~-----------~~~~~~~Y~~sK~~~E~~  189 (200)
                      ++...      .+...+++|+.++.++++++.+.+.. .+++.|+.. +..           +..|..+|+.+|...|..
T Consensus        87 aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~~e~~  166 (356)
T d1rkxa_          87 AAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELV  166 (356)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHHHH
T ss_pred             hccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCccccccccchhh
Confidence            98643      34567899999999999999887654 555555532 211           123567899999999988


Q ss_pred             HHhh
Q 029008          190 LLAC  193 (200)
Q Consensus       190 ~~~~  193 (200)
                      +..+
T Consensus       167 ~~~~  170 (356)
T d1rkxa_         167 TSSY  170 (356)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            7753

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.7e-20  Score=147.99  Aligned_cols=142  Identities=15%  Similarity=0.087  Sum_probs=109.7

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc-----------CCCCeeEEEccCCCHHHHHHHhc
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-----------WANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-----------~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      +..++|+++||||+++||+++++.|+++|++|++.+|+.+......           .........+|+.|.++++++++
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence            4567899999999999999999999999999999988754321100           01234566788888877766553


Q ss_pred             -------CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcch
Q 029008          121 -------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGY  179 (200)
Q Consensus       121 -------~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y  179 (200)
                             ++|++|||||...          +|+..+++|+.+++.+.+++    ++++.++||++||...-.+.+....|
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~~~~Y  162 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANY  162 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHH
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCCCcHHH
Confidence                   6899999999642          35678899999999887775    45566799999995433455667899


Q ss_pred             hhhHHhhHHHHHhh
Q 029008          180 YEGKDSNLSPLLAC  193 (200)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (200)
                      +++|++++.+.+..
T Consensus       163 ~asKaal~~lt~~l  176 (302)
T d1gz6a_         163 SAAKLGLLGLANTL  176 (302)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=5.4e-20  Score=142.34  Aligned_cols=139  Identities=14%  Similarity=0.109  Sum_probs=107.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHH---CCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           55 PSEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .||+|+||||+++||.+++++|++   +|++|++.+|+.++..+    .....++.++.+|++|+++++++++       
T Consensus         1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   80 (248)
T d1snya_           1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK   80 (248)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence            378999999999999999999974   69999999999776322    1124689999999999988886544       


Q ss_pred             --CCCEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----c-----------CCCEEEEEecccc---
Q 029008          121 --GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----K-----------GVKRFVYISAADF---  169 (200)
Q Consensus       121 --~~d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~-----------~~~~~v~vSS~~~---  169 (200)
                        ++|++|||||...           .++..+++|+.+++.+.+++..    .           +..++|++||...   
T Consensus        81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~  160 (248)
T d1snya_          81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ  160 (248)
T ss_dssp             GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred             cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence              4899999999632           1345789999999988777532    1           3468999999532   


Q ss_pred             CcCCcCCcchhhhHHhhHHHHHhh
Q 029008          170 GVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       170 ~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +.+.+....|++||+++..+.+..
T Consensus       161 ~~~~~~~~~Y~aSKaal~~lt~~l  184 (248)
T d1snya_         161 GNTDGGMYAYRTSKSALNAATKSL  184 (248)
T ss_dssp             TCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHH
Confidence            233445568999999999988763

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=2.6e-20  Score=146.22  Aligned_cols=140  Identities=11%  Similarity=0.013  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------cc--CCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      .++|+++||||+++||+++++.|+++|++|++++|+.++..+      ..  ...++.++.+|++|+++++++++     
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999998643111      11  12368899999999999888765     


Q ss_pred             --CCCEEEEccccCC------------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 --GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 --~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                        ++|++|||||...            .|+..+++|+.+++.+.+++.    +.+.++++++||...-.+.+....|+.+
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~~~~Y~as  161 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACA  161 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTSHHHHHH
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCCCCceehhh
Confidence              5899999998421            245678999999998887764    3455577777775433445566789999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++++.+.+..
T Consensus       162 Kaal~~ltk~l  172 (274)
T d1xhla_         162 KAALDQYTRCT  172 (274)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            99999998863

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.4e-20  Score=143.66  Aligned_cols=139  Identities=18%  Similarity=0.164  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------cc-CCCCeeEEEccCCCHHHHHHHhc------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~-~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      .++|+++||||+++||.++++.|+++|++|++.+|+.++..+      .. ...++.++++|++|+++++++++      
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            467999999999999999999999999999999998643111      11 13478899999999999888765      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcC--CCEEEEEecccc--CcCCcCCcchhh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKG--VKRFVYISAADF--GVANYLLQGYYE  181 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~--~~~~v~vSS~~~--~~~~~~~~~Y~~  181 (200)
                       ++|++|||||...          .|+..+++|+.+.+.+.+++    ++++  ..+||++||...  +.+......|+.
T Consensus        88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~~~~~Y~~  167 (257)
T d1xg5a_          88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSA  167 (257)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHHH
T ss_pred             CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCcccHHHHH
Confidence             5899999999632          34567899999998876665    3443  469999999532  234445567999


Q ss_pred             hHHhhHHHHHh
Q 029008          182 GKDSNLSPLLA  192 (200)
Q Consensus       182 sK~~~E~~~~~  192 (200)
                      +|++++.+.+.
T Consensus       168 sKaal~~ltr~  178 (257)
T d1xg5a_         168 TKYAVTALTEG  178 (257)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhCHHH
Confidence            99999999875

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=2.5e-20  Score=140.64  Aligned_cols=134  Identities=16%  Similarity=0.210  Sum_probs=101.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~  132 (200)
                      .|+|+|||||||+|++|+++|+++|+  +|+++.|++...     ...+.   .+..|..++... ...+|+||||+|..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-----~~~~~---~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-----HPRLD---NPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-----CTTEE---CCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-----ccccc---ccccchhhhhhccccchheeeeeeeee
Confidence            48999999999999999999999998  667777654332     12333   344444444433 34589999999864


Q ss_pred             ----CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh-ccCccc
Q 029008          133 ----GSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC-YSLCCL  199 (200)
Q Consensus       133 ----~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~-~~~~~~  199 (200)
                          .....+.++|+.++.+++++|++.++++|+++||.  +....+.+.|..+|+.+|+.+++. ++++++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~--~~~~~~~~~y~~~K~~~E~~l~~~~~~~~~I  143 (212)
T d2a35a1          74 IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSAL--GADAKSSIFYNRVKGELEQALQEQGWPQLTI  143 (212)
T ss_dssp             HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT--TCCTTCSSHHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             ccccccccccccchhhhhhhccccccccccccccccccc--ccccccccchhHHHHHHhhhcccccccccee
Confidence                23456788999999999999999999999999995  333455678999999999999874 554443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=3.4e-20  Score=144.79  Aligned_cols=140  Identities=15%  Similarity=0.049  Sum_probs=107.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------c--cCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D--SWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~--~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      .++|+++||||+++||++++++|+++|++|++++|+.++..+      .  ....++.++.+|++|+++++++++     
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999998654211      1  112368999999999999988775     


Q ss_pred             --CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHc---CCCEEEEEeccccC-cCCcCCcchh
Q 029008          121 --GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFG-VANYLLQGYY  180 (200)
Q Consensus       121 --~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~---~~~~~v~vSS~~~~-~~~~~~~~Y~  180 (200)
                        ++|++|||||...              .|+..+++|+.+++.+.+++.+.   +...+|+++|...+ .+.+....|+
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~~~~~Y~  162 (264)
T d1spxa_          83 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYS  162 (264)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCTTSHHHH
T ss_pred             hCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccCCCchhhh
Confidence              5899999998521              24567899999999888877432   23467777764333 3455567899


Q ss_pred             hhHHhhHHHHHhh
Q 029008          181 EGKDSNLSPLLAC  193 (200)
Q Consensus       181 ~sK~~~E~~~~~~  193 (200)
                      .+|++++.+.+..
T Consensus       163 asKaal~~lt~~l  175 (264)
T d1spxa_         163 IAKAAIDQYTRNT  175 (264)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHH
Confidence            9999999998863

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=6.9e-20  Score=140.63  Aligned_cols=135  Identities=17%  Similarity=0.070  Sum_probs=108.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH-HHHHHHhcCCCEEEEccccCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS-DSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ++|+++||||+++||+++++.|+++|++|++++|+.+...    ....+++.+|+++. +.+.+.+.++|++|||||...
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~----~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~~   78 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGPK   78 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH----hcCCcEEEcchHHHHHHHHHHhCCCcEEEecccccC
Confidence            6799999999999999999999999999999999854321    23456788999763 555566678999999999532


Q ss_pred             ----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          134 ----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       134 ----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                                +|+..+++|+.+++.+.+++    ++.+..++|++||.....+.+....|+.+|++++.+.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~~~~Y~asKaal~~ltk~l  152 (234)
T d1o5ia_          79 AGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTL  152 (234)
T ss_dssp             CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccccccccchhHHHHHHHHHHHH
Confidence                      34567899999998877776    4456679999999765666677789999999999988863

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-19  Score=143.91  Aligned_cols=140  Identities=16%  Similarity=0.074  Sum_probs=111.2

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----------ccCCCCeeEEEccCCCHHHHHHHhc--
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----------DSWANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      ..++|+++||||+++||.++++.|+++|++|++++|+.++..+          .....++.++.+|++|+++++++++  
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999999998643110          1123578999999999999888765  


Q ss_pred             -----CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchhh
Q 029008          121 -----GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYE  181 (200)
Q Consensus       121 -----~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~~~~~~v~vSS~~~~~~~~~~~~Y~~  181 (200)
                           ++|++|||||...          .|+..+++|+.+++.+.+++.+    .+..++|++|+.. ....+....|+.
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~-~~~~~~~~~Y~a  167 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPLAVHSGA  167 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCTTCHHHHH
T ss_pred             HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccc-cccccccccchh
Confidence                 5899999998532          3566889999999998888743    3455788887643 233455678999


Q ss_pred             hHHhhHHHHHhh
Q 029008          182 GKDSNLSPLLAC  193 (200)
Q Consensus       182 sK~~~E~~~~~~  193 (200)
                      +|++++.+.+..
T Consensus       168 sKaal~~ltk~l  179 (297)
T d1yxma1         168 ARAGVYNLTKSL  179 (297)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998863

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.81  E-value=4e-20  Score=142.56  Aligned_cols=139  Identities=15%  Similarity=0.142  Sum_probs=109.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCCE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~  124 (200)
                      .++|+++||||+++||.++++.|+++|++|++.+|+.++..+  .....++.++++|++|+++++++++       ++|+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            578999999999999999999999999999999998654221  2224578899999999999987765       5899


Q ss_pred             EEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       125 vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      +|||||...          .|+..+++|+.+.+.+.+++....  .+.++++|+.. ....+....|+.+|+++|.+.+.
T Consensus        83 LinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a-~~~~~~~~~Y~~sK~al~~lt~~  161 (241)
T d2a4ka1          83 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA-GLGAFGLAHYAAGKLGVVGLART  161 (241)
T ss_dssp             EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT-TCCHHHHHHHHHCSSHHHHHHHH
T ss_pred             eccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccc-cccccCccccchhhHHHHHHHHH
Confidence            999998532          346778999999999998876543  23555555532 33435567899999999999987


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       162 l  162 (241)
T d2a4ka1         162 L  162 (241)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.81  E-value=4.1e-20  Score=143.94  Aligned_cols=142  Identities=15%  Similarity=0.066  Sum_probs=110.7

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      .|..+|+++||||+++||.++++.|+++|++|++..++.++..+      .....++..+.+|++|+++++++++     
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999987776544221      1224578999999999999888765     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCc-CCcCCcchhhhHHh
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGV-ANYLLQGYYEGKDS  185 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~-~~~~~~~Y~~sK~~  185 (200)
                        ++|++|||||...          .|+..+++|+.+.+.+++++.++-  -+++++++|..... +.+....|+.+|++
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~~~~~~Y~asK~a  161 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNHALYAGSKAA  161 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCCSCHHHHHHHHH
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCCCCchhHHHHHHH
Confidence              5899999999642          235678999999999998886542  23677776643222 34567789999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+++..
T Consensus       162 l~~l~r~l  169 (259)
T d1ja9a_         162 VEGFCRAF  169 (259)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.81  E-value=6.4e-20  Score=142.92  Aligned_cols=141  Identities=18%  Similarity=0.209  Sum_probs=108.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc------
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~------  120 (200)
                      ..++|+++||||+++||.++++.|+++|++|++++|+.++..+      .....++.++.+|++|+++++++++      
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999998766322      1124578999999999999988775      


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH----c-CCCEEEEEeccccCc-------CCcCCc
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----K-GVKRFVYISAADFGV-------ANYLLQ  177 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~----~-~~~~~v~vSS~~~~~-------~~~~~~  177 (200)
                       ++|++|||||...          +|+..+++|+.+++.+.+++.+    . +.+.++.+++.....       +.+...
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~~~~~~~  165 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQV  165 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCH
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccccCcccc
Confidence             5899999998542          3466789999999988776532    2 344666666642211       123456


Q ss_pred             chhhhHHhhHHHHHhh
Q 029008          178 GYYEGKDSNLSPLLAC  193 (200)
Q Consensus       178 ~Y~~sK~~~E~~~~~~  193 (200)
                      .|+.+|++++.+.+..
T Consensus       166 ~Y~asKaal~~lt~~l  181 (260)
T d1h5qa_         166 FYNSSKAACSNLVKGL  181 (260)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHH
Confidence            8999999999998863

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=140.34  Aligned_cols=140  Identities=7%  Similarity=-0.018  Sum_probs=112.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc---CCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~ag  130 (200)
                      ..+|+++||||+++||+++++.|+++|++|++++|++++..+.....++.+..+|+.+.+.++...+   ++|++|||+|
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag   83 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEeccc
Confidence            5789999999999999999999999999999999986553333334578899999998877776554   6899999999


Q ss_pred             cCC----------CCcccchhhHHHHHHHHHHHH----HcCCCEEEEEeccccC-cCCcCCcchhhhHHhhHHHHHhh
Q 029008          131 GFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFG-VANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~----------~~~~~~~~n~~~~~~~~~~a~----~~~~~~~v~vSS~~~~-~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...          .|+..+++|+.+++.+.+++.    +.+..++|++||.... .+.+....|+.+|++++.+++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~~Y~~sKaal~~l~r~l  161 (245)
T d2ag5a1          84 FVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSV  161 (245)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCccchhHHHHHHHHHHHHHHHH
Confidence            542          345678999999998877764    4456699999985433 34566678999999999999864

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=142.84  Aligned_cols=138  Identities=12%  Similarity=0.029  Sum_probs=107.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeec---CCCCccc--------ccCCCCeeEEEccCCCHHHHHHHhc----
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSR---SGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALD----  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r---~~~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~----  120 (200)
                      .|.|+||||+++||+++++.|+++|++|+.+.+   +.+....        .....++.++.+|++|+++++++++    
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            467899999999999999999999998665543   3222110        1224579999999999999998875    


Q ss_pred             -CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHh
Q 029008          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 -~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~  185 (200)
                       .+|++|||+|...          .|+..+++|+.|++++.+++    ++++.++||++||...-.+.+....|++||++
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~~~Y~asKaa  161 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFA  161 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHHHH
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCchHHHHHHHH
Confidence             4799999998532          34567899999999887775    55667799999996555566667889999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+.+..
T Consensus       162 l~~l~~~l  169 (285)
T d1jtva_         162 LEGLCESL  169 (285)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988863

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.80  E-value=1.7e-19  Score=141.37  Aligned_cols=142  Identities=15%  Similarity=0.077  Sum_probs=111.8

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ...++|+++||||+++||+++++.|+++|++|++++|+.++..+      .....++.++.+|++|+++++++++     
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999887544211      1234578999999999999888765     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccc-cCcCCcCCcchhhhHHh
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAAD-FGVANYLLQGYYEGKDS  185 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~-~~~~~~~~~~Y~~sK~~  185 (200)
                        ++|++|||+|...          .++..+++|+.+++.+.+++.+.-  -+++++++|.. ...+.+....|+.+|++
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~~~~~~Y~asKaa  173 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGA  173 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCSSCHHHHHHHHH
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccccccchhhHHHHHHH
Confidence              5899999998542          345678999999999999986642  34788888743 33344556779999999


Q ss_pred             hHHHHHhh
Q 029008          186 NLSPLLAC  193 (200)
Q Consensus       186 ~E~~~~~~  193 (200)
                      ++.+++..
T Consensus       174 l~~ltk~l  181 (272)
T d1g0oa_         174 IETFARCM  181 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998863

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=1.3e-19  Score=140.71  Aligned_cols=140  Identities=11%  Similarity=0.031  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+|  +||++++++|+++|++|++.+|+.....+    ........++++|++|+++++++++       
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            5789999999987  89999999999999999988887543211    1123467889999999999888765       


Q ss_pred             CCCEEEEccccCC--------------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~--------------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      ++|++|||||...              +|...+++|+.+.+.+.+++...-  .+++|++||.....+.+....|+.+|+
T Consensus        86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKa  165 (256)
T d1ulua_          86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKA  165 (256)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTCHHHHHHHH
T ss_pred             CceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCCCchHHHHHHH
Confidence            5899999998531              123467899999999888875432  248999999655555667789999999


Q ss_pred             hhHHHHHhh
Q 029008          185 SNLSPLLAC  193 (200)
Q Consensus       185 ~~E~~~~~~  193 (200)
                      +++.+.+..
T Consensus       166 al~~ltr~l  174 (256)
T d1ulua_         166 ALEASVRYL  174 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998863

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.79  E-value=4.3e-19  Score=137.89  Aligned_cols=138  Identities=22%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc--c------ccCCCCeeEEEccCCCHHHHHHHhcC-----
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL--R------DSWANNVIWHQGNLLSSDSWKEALDG-----  121 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--~------~~~~~~~~~~~~Dl~d~~~~~~~~~~-----  121 (200)
                      ..+++||||+|+||.+++++|+++|+ +|+++.|+.....  +      .....++.++.+|++|+++++++++.     
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~   88 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV   88 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence            35999999999999999999999999 4777888642211  1      11235789999999999999988763     


Q ss_pred             -CCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHH
Q 029008          122 -VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPL  190 (200)
Q Consensus       122 -~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (200)
                       +|.||||+|...          .+...+++|+.+..++.+++...+.++||++||...-.+.+....|+++|++.+.+.
T Consensus        89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~~~~YaAaka~l~~la  168 (259)
T d2fr1a1          89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYLDGLA  168 (259)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTCTTTHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCcccHHHHHHHHhHHHHH
Confidence             689999999643          124467899999999999988888889999999644445566788999999999988


Q ss_pred             Hhh
Q 029008          191 LAC  193 (200)
Q Consensus       191 ~~~  193 (200)
                      +..
T Consensus       169 ~~~  171 (259)
T d2fr1a1         169 QQR  171 (259)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3.3e-19  Score=138.72  Aligned_cols=141  Identities=13%  Similarity=0.033  Sum_probs=111.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHH---CCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhc--
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      ...+|.++||||+++||.+++++|++   +|++|++++|+.++..+       .....++.++.+|++|+++++++++  
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~   82 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            45789999999999999999999986   79999999998654211       1113478899999999999888763  


Q ss_pred             ---------CCCEEEEccccCC-------------CCcccchhhHHHHHHHHHHHHHc----C--CCEEEEEeccccCcC
Q 029008          121 ---------GVTAVISCVGGFG-------------SNSYMYKINGTANINAIRAASEK----G--VKRFVYISAADFGVA  172 (200)
Q Consensus       121 ---------~~d~vi~~ag~~~-------------~~~~~~~~n~~~~~~~~~~a~~~----~--~~~~v~vSS~~~~~~  172 (200)
                               .+|++|||||...             .|+..+++|+.+++.+.+++.+.    +  ..+||++||...-.+
T Consensus        83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~  162 (259)
T d1oaaa_          83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP  162 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred             HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCC
Confidence                     3579999998532             23457899999999999988654    2  248999999654455


Q ss_pred             CcCCcchhhhHHhhHHHHHhh
Q 029008          173 NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+....|+++|++++.+.+..
T Consensus       163 ~~~~~~Y~asKaal~~lt~~l  183 (259)
T d1oaaa_         163 YKGWGLYCAGKAARDMLYQVL  183 (259)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHH
Confidence            667789999999999988863

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=4.1e-19  Score=136.37  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=101.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh-------c--CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-------D--GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~--~~d~v  125 (200)
                      ++|+|+||||+|+||.++++.|+++|++|.++++...+..     .......+|..+.+..+.+.       .  ++|++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~l   75 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAI   75 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceEE
Confidence            4799999999999999999999999999999988765431     23344555665554444322       2  48999


Q ss_pred             EEccccCC-----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          126 ISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       126 i~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      |||||.+.           .++..+++|+.+++++.+++.+.  +.++||++||...-.+.+....|+.||++++.+.+.
T Consensus        76 InnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~  155 (236)
T d1dhra_          76 LCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQS  155 (236)
T ss_dssp             EECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHH
T ss_pred             EECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCccCCcccHHHHHHHHHHHHH
Confidence            99998532           23457899999999988888653  235899999965445556678999999999999997


Q ss_pred             h
Q 029008          193 C  193 (200)
Q Consensus       193 ~  193 (200)
                      .
T Consensus       156 l  156 (236)
T d1dhra_         156 L  156 (236)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=3.9e-19  Score=136.41  Aligned_cols=133  Identities=23%  Similarity=0.202  Sum_probs=100.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-------h--cCCCEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-------L--DGVTAVI  126 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-------~--~~~d~vi  126 (200)
                      ..+|+||||+++||.+++++|+++|++|++++|+.++..     .....+.+|+.+.+.....       +  .++|++|
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~li   76 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVF   76 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-----cccceeccccCchhHHHHHHHHHHHHhcCCCeeEEE
Confidence            357899999999999999999999999999999865432     2334455666555443322       2  2489999


Q ss_pred             EccccCC-----------CCcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          127 SCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       127 ~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ||||.+.           .++..+++|+.+++.+.+++...  +..+||++||.....+.+....|+++|++++.+.+..
T Consensus        77 nnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~l  156 (235)
T d1ooea_          77 CVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSL  156 (235)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcccccchHHHHHHHHHHHHHH
Confidence            9999532           13456899999999888888654  2258999999654555667789999999999999874

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.77  E-value=2.9e-19  Score=140.10  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=97.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~-  133 (200)
                      |+||||||+||||++|+++|.++|+.| +++++...            +.+|++|.+.++++++  ++|+|||+||... 
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~------------~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~   67 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE------------FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAV   67 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS------------SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc------------ccCcCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence            579999999999999999999998754 44544322            2369999999999987  4699999998543 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcC----------CcCCcchhhhHHhhHHHHHhhcc
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVA----------NYLLQGYYEGKDSNLSPLLACYS  195 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~-~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~~  195 (200)
                           .+...+++|+.++.++++++++.+. +++++||. .|+..          ..|.+.|+.+|..+|..++.+..
T Consensus        68 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y~~~k~~~e~~~~~~~~  144 (298)
T d1n2sa_          68 DKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCP  144 (298)
T ss_dssp             HHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHHHHHHCS
T ss_pred             cccccCccccccccccccccchhhhhcccc-ccccccccccccCCCCCCCccccccCCCchHhhhhhhhhhhHHhhhc
Confidence                 3455778999999999999988876 57777764 33321          23567899999999999987644

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.77  E-value=5.8e-20  Score=142.55  Aligned_cols=135  Identities=15%  Similarity=0.004  Sum_probs=102.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-------CCCEEEEccc
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISCVG  130 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~vi~~ag  130 (200)
                      +++||||+++||+++++.|+++|++|++.+|+.+...+ .......+..+|++|.++++++++       ++|++|||||
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~-~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg   80 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDE-LEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   80 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHH-HHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            68999999999999999999999999999987655221 111122345678888777666554       6899999998


Q ss_pred             cCC-----------CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          131 GFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       131 ~~~-----------~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...           +|+..+++|+.+++.+.+++    ++++..+||++||...-.+.+....|+.+|++++.+.+..
T Consensus        81 ~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~~~Y~asKaal~~lt~~l  158 (252)
T d1zmta1          81 FAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANAL  158 (252)
T ss_dssp             CCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccccccccccccccHHHHHHHH
Confidence            532           24567789999998877775    4556679999999654445556678999999999998864

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.76  E-value=2.6e-18  Score=132.89  Aligned_cols=138  Identities=13%  Similarity=0.068  Sum_probs=103.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc---------CC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD---------GV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~---------~~  122 (200)
                      +|+|+||||+++||.+++++|+++|+  +|++..|+.++..+  .....++.++.+|++|.++++++++         ++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            48999999999999999999999996  67888888655322  2234689999999999988887653         38


Q ss_pred             CEEEEccccCC-----------CCcccchhhHHHHHHHHHHHHH----c-----------CCCEEEEEecccc-------
Q 029008          123 TAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----K-----------GVKRFVYISAADF-------  169 (200)
Q Consensus       123 d~vi~~ag~~~-----------~~~~~~~~n~~~~~~~~~~a~~----~-----------~~~~~v~vSS~~~-------  169 (200)
                      |++|||||...           .++..+++|+.+++.+.+.+..    .           ...+++.+|+...       
T Consensus        83 dilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~  162 (250)
T d1yo6a1          83 SLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTS  162 (250)
T ss_dssp             CEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTCCS
T ss_pred             EEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccCCcc
Confidence            99999999632           1345789999999988777532    1           1247888887321       


Q ss_pred             CcCCcCCcchhhhHHhhHHHHHhh
Q 029008          170 GVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       170 ~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +....+...|+.||+++..+.+..
T Consensus       163 ~~~~~~~~aY~aSKaal~~l~~~l  186 (250)
T d1yo6a1         163 GSAQFPVLAYRMSKAAINMFGRTL  186 (250)
T ss_dssp             TTSSSCBHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHH
Confidence            122334456999999999988863

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.7e-19  Score=139.56  Aligned_cols=111  Identities=19%  Similarity=0.099  Sum_probs=88.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCccc-----ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      +.++||||+++||.+++++|+++ |++|++.+|+.++..+     .....++.++.+|++|.++++++++       ++|
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iD   83 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD   83 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCcE
Confidence            34599999999999999999986 8999999998755211     1224578999999999999887664       589


Q ss_pred             EEEEccccCC----------CCcccchhhHHHHHHHHHHHHHcC--CCEEEEEecc
Q 029008          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAA  167 (200)
Q Consensus       124 ~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~~~--~~~~v~vSS~  167 (200)
                      ++|||||...          .++..+++|+.+++.+.+.+...-  -.++|++||.
T Consensus        84 iLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~  139 (275)
T d1wmaa1          84 VLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  139 (275)
T ss_dssp             EEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             EEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence            9999999642          234578999999999999986542  2489999984

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-18  Score=136.52  Aligned_cols=140  Identities=15%  Similarity=0.069  Sum_probs=109.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|+++||||+++||++++++|+++|++|++++|+.++..+      ......+..+.+|+.+.+.+....+       
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999998654211      1224567889999998877765443       


Q ss_pred             CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchhhhHHhhH
Q 029008          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKDSNL  187 (200)
Q Consensus       121 ~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~~---~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E  187 (200)
                      .+|++++|+|...          .++..+++|+.++..+.+.+..   .+.+++|++||...-.+.+....|+.||++++
T Consensus        92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p~~~~Y~asKaal~  171 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALD  171 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTCHHHHHHHHHHH
T ss_pred             CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCCCchHHHHHHHHHH
Confidence            5899999998532          2245689999999887777632   23468999999654555667789999999999


Q ss_pred             HHHHhh
Q 029008          188 SPLLAC  193 (200)
Q Consensus       188 ~~~~~~  193 (200)
                      .+.+..
T Consensus       172 ~~~~~L  177 (269)
T d1xu9a_         172 GFFSSI  177 (269)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=136.25  Aligned_cols=142  Identities=12%  Similarity=-0.013  Sum_probs=106.4

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc------ccCCCCeeEEEccCCCHHHHHHHhc-----
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-----  120 (200)
                      ...++|+++||||+|+||++++++|+++|++|++++|+.++..+      ......+.++.+|++|.++++++++     
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence            35688999999999999999999999999999999998654211      1224578899999999999887654     


Q ss_pred             --CCCEEEEccccCC----------CCcccchhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 --~~d~vi~~ag~~~----------~~~~~~~~n~~~~~~~~~~a~-----~~~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                        ++|++|||||...          .+...+.+|......+...+.     ..+...++.+||.....+.+....|+.+|
T Consensus       101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~~~YsasK  180 (294)
T d1w6ua_         101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAK  180 (294)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHHH
T ss_pred             ccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcccccchHHHHH
Confidence              5899999999643          123456777777766655432     22344677777654344555667899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+.+..
T Consensus       181 aal~~ltk~l  190 (294)
T d1w6ua_         181 AGVEAMSKSL  190 (294)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=6.8e-18  Score=127.93  Aligned_cols=137  Identities=18%  Similarity=0.196  Sum_probs=103.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCc--EEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLT--VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      .+++||||||+|+||++++++|+++|++  |+++.|+++..  .....+++++.+|+.|.+.+.++++++|+|||+++..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~   79 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK--EKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV   79 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH--HHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH--HhccCCcEEEEeeeccccccccccccceeeEEEEeec
Confidence            4789999999999999999999999986  45556654332  2234578999999999999999999999999999853


Q ss_pred             C-------------------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcC-----CcchhhhHHhhHH
Q 029008          133 G-------------------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYL-----LQGYYEGKDSNLS  188 (200)
Q Consensus       133 ~-------------------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~-----~~~Y~~sK~~~E~  188 (200)
                      .                   .+.....+|+.++.+++..+...+.+.+.+.|+.....+..+     ...|...+...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (252)
T d2q46a1          80 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQ  159 (252)
T ss_dssp             CEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCGGGGGGGCCHHHHHHHHHH
T ss_pred             cccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcccccccccchhhhhhhhhh
Confidence            2                   123445788999999999999888999999988543333322     3345556666665


Q ss_pred             HHHhh
Q 029008          189 PLLAC  193 (200)
Q Consensus       189 ~~~~~  193 (200)
                      +....
T Consensus       160 ~~~~~  164 (252)
T d2q46a1         160 YLADS  164 (252)
T ss_dssp             HHHHS
T ss_pred             hhhcc
Confidence            55543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-17  Score=128.73  Aligned_cols=141  Identities=14%  Similarity=0.155  Sum_probs=109.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhc-------CCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d  123 (200)
                      ..++|+++||||+++||.+++++|+++|++|++++|+.+...+  ............|+.+.+.++....       ..|
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVD   81 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCccccccccccccccccccccccccccccc
Confidence            3578999999999999999999999999999999998765322  1224578888999999877765443       478


Q ss_pred             EEEEccccCC----------------CCcccchhhHHHHHHHHHHHHHc----------CCCEEEEEeccccCcCCcCCc
Q 029008          124 AVISCVGGFG----------------SNSYMYKINGTANINAIRAASEK----------GVKRFVYISAADFGVANYLLQ  177 (200)
Q Consensus       124 ~vi~~ag~~~----------------~~~~~~~~n~~~~~~~~~~a~~~----------~~~~~v~vSS~~~~~~~~~~~  177 (200)
                      .++++++...                .|+..+++|+.+++++.+++...          +..+||++||.....+.+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~  161 (248)
T d2o23a1          82 VAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQA  161 (248)
T ss_dssp             EEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCH
T ss_pred             ccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCCCCch
Confidence            8888875321                23567899999999999887442          234899999965445556678


Q ss_pred             chhhhHHhhHHHHHhh
Q 029008          178 GYYEGKDSNLSPLLAC  193 (200)
Q Consensus       178 ~Y~~sK~~~E~~~~~~  193 (200)
                      .|+.+|++++.+.+..
T Consensus       162 ~Y~asKaal~~lt~~l  177 (248)
T d2o23a1         162 AYSASKGGIVGMTLPI  177 (248)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.73  E-value=3.9e-17  Score=131.53  Aligned_cols=134  Identities=16%  Similarity=0.066  Sum_probs=106.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCH-HHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSS-DSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~-~~~~~~~~~~d~vi~~ag~  131 (200)
                      +.|+|+||||||++|++++++|+++||+|+++.|+......  .....+++++.+|+.|. +.++.++.++|+++++...
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            46899999999999999999999999999999998765322  12345899999999985 4577899999999887543


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEecccc--CcCCcCCcchhhhHHhhHHHHHhhc
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADF--GVANYLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~--~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                            ....++..+.+++++|.+.|++++++.||...  .....+...|..+|...|.++++..
T Consensus        82 ------~~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~  140 (350)
T d1xgka_          82 ------QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLG  140 (350)
T ss_dssp             ------TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSS
T ss_pred             ------ccchhhhhhhHHHHHHHHhCCCceEEEeeccccccCCcccchhhhhhHHHHHHHHHhhc
Confidence                  22356778889999999999888888888432  2233455688899999999988753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.72  E-value=3.3e-17  Score=128.82  Aligned_cols=134  Identities=19%  Similarity=0.135  Sum_probs=104.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      +++|||||||||++|++|+++|+++|++|++++|+......       .....+++++.+|+.|.+.+.+.+.+++++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            35689999999999999999999999999999997654221       12246799999999999999999999999999


Q ss_pred             ccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccc-cC----cCCcCCcchhhhHHhhHHHHHhh
Q 029008          128 CVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD-FG----VANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       128 ~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~-~~----~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      +++..     ....|..+..++++++.+.+..++++.||.. +.    .+..+...|...|..++...++.
T Consensus        82 ~~~~~-----~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
T d1qyda_          82 ALAGG-----VLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAA  147 (312)
T ss_dssp             CCCCS-----SSSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCCCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred             hhhhc-----ccccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcccccchhhhhhHHHHHHHHhhccc
Confidence            98753     2345666677888999888877777787742 21    22344556778888888877764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.70  E-value=4.4e-17  Score=126.76  Aligned_cols=124  Identities=21%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccccCC-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~~~-  133 (200)
                      |+||||||+||||++|+++|.++|++|++++|+.                +|+.|.+.++++++  ++|+|||+++... 
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~----------------~D~~d~~~~~~~l~~~~~d~vih~a~~~~~   65 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD----------------LDITNVLAVNKFFNEKKPNVVINCAAHTAV   65 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT----------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh----------------ccCCCHHHHHHHHHHcCCCEEEeecccccc
Confidence            5799999999999999999999999999998862                48999999999987  5799999998653 


Q ss_pred             -----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchhhhHHhhHHHHHhhccCc
Q 029008          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKDSNLSPLLACYSLC  197 (200)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~~~~  197 (200)
                           .+...+..|+.....+.+.+...+. .+++.|| ..|+.+          ..+...|+.+|...|+++++.....
T Consensus        66 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~~~~k~~~e~~~~~~~~~~  144 (281)
T d1vl0a_          66 DKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKY  144 (281)
T ss_dssp             HHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCSSE
T ss_pred             ccccccchhhcccccccccccccccccccc-cccccccceeeeccccccccccccccchhhhhhhhhHHHHHHHHhCCCc
Confidence                 2344567788888888888877654 5666665 444332          2455679999999999999865433

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.68  E-value=1.5e-16  Score=124.52  Aligned_cols=138  Identities=12%  Similarity=0.034  Sum_probs=99.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCC-----------------CeeEEEccCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWAN-----------------NVIWHQGNLLS  111 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~-----------------~~~~~~~Dl~d  111 (200)
                      ++.++||||+++||+++++.|+++|++|++.+++.....+       .....                 .+..+.+|+++
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence            5689999999999999999999999999998876533111       01112                 23445667888


Q ss_pred             HHHHHHHhc-------CCCEEEEccccCCC----------Cc--------------ccchhhHHHHHHHHHHHHHc----
Q 029008          112 SDSWKEALD-------GVTAVISCVGGFGS----------NS--------------YMYKINGTANINAIRAASEK----  156 (200)
Q Consensus       112 ~~~~~~~~~-------~~d~vi~~ag~~~~----------~~--------------~~~~~n~~~~~~~~~~a~~~----  156 (200)
                      .++++++++       ++|++|||||....          ++              ..+.+|+.+.+.+.+++.+.    
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  161 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT  161 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence            888887764       68999999996421          11              24678888888887775321    


Q ss_pred             ------CCCEEEEEeccccCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          157 ------GVKRFVYISAADFGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       157 ------~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                            +..++|+++|.....+.+....|+.+|++++.+.+..
T Consensus       162 ~~~~~~~~~~ii~~~s~~~~~~~~~~~~Y~asKaal~~lt~~l  204 (284)
T d1e7wa_         162 PAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSA  204 (284)
T ss_dssp             CGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcccccccccccCCccceeeeccccccchhhhHHH
Confidence                  2347888888766666677789999999999998864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.65  E-value=5.9e-16  Score=120.73  Aligned_cols=130  Identities=25%  Similarity=0.337  Sum_probs=99.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--------ccCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      .+||||||||||++|++++++|+++|++|++++|+......        .....+++++.+|+.+.+.+.+.+++++.++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi   81 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   81 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence            46899999999999999999999999999999998655321        1124578999999999999999999999999


Q ss_pred             EccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcC----CcchhhhHHhhHHHHHhh
Q 029008          127 SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYL----LQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       127 ~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~~~~----~~~Y~~sK~~~E~~~~~~  193 (200)
                      |+++..         +..++.++++++...+++++++.|+..+.....+    ...|...+...+..+++.
T Consensus        82 ~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (307)
T d1qyca_          82 STVGSL---------QIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAE  143 (307)
T ss_dssp             ECCCGG---------GSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             eccccc---------ccchhhHHHHHHHHhccccceeeeccccccccccccccccccccccccccchhhcc
Confidence            988753         2334456788888888889999888543332222    234666667777777664

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=9.6e-16  Score=117.07  Aligned_cols=130  Identities=19%  Similarity=0.181  Sum_probs=98.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc------CCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD------GVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d~vi~~ag  130 (200)
                      |+++||||+++||++++++|+++|++|++++|+.+.       .+....++|+.+......+..      ..+.++++++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG-------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   74 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS-------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc-------ccceEeeccccchhhhHHHHHhhhccccccchhhhhh
Confidence            799999999999999999999999999999998644       345678899998877666543      3455556554


Q ss_pred             cCC--------------CCcccchhhHHHHHHHHHHHHH----------cCCCEEEEEeccccCcCCcCCcchhhhHHhh
Q 029008          131 GFG--------------SNSYMYKINGTANINAIRAASE----------KGVKRFVYISAADFGVANYLLQGYYEGKDSN  186 (200)
Q Consensus       131 ~~~--------------~~~~~~~~n~~~~~~~~~~a~~----------~~~~~~v~vSS~~~~~~~~~~~~Y~~sK~~~  186 (200)
                      ...              .++..+++|+.+...+.+.+..          .+..+||++||...-.+.+....|+.+|+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal  154 (241)
T d1uaya_          75 VGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGV  154 (241)
T ss_dssp             CCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCchhhHHHHHHH
Confidence            211              2345678898888877766532          2345899999964444556678999999999


Q ss_pred             HHHHHhh
Q 029008          187 LSPLLAC  193 (200)
Q Consensus       187 E~~~~~~  193 (200)
                      +.+.+..
T Consensus       155 ~~lt~~l  161 (241)
T d1uaya_         155 VALTLPA  161 (241)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.5e-15  Score=117.60  Aligned_cols=132  Identities=18%  Similarity=0.194  Sum_probs=89.2

Q ss_pred             EEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc-ccCCCCeeEEEccCCCHHH-HHHHh-----cCCCEEEEccc
Q 029008           59 LLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDS-WKEAL-----DGVTAVISCVG  130 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d~~~-~~~~~-----~~~d~vi~~ag  130 (200)
                      ||||||+||||++|+++|+++|+ +|+++++-...... ......    ..|..+.+. ....+     ..+++++|+|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN----IADYMDKEDFLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSC----CSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccc----hhhhccchHHHHHHhhhhcccchhhhhhhcc
Confidence            89999999999999999999996 78888644322111 010111    112222222 22222     35799999987


Q ss_pred             cCC----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCcC----------CcCCcchhhhHHhhHHHHHhhc
Q 029008          131 GFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVA----------NYLLQGYYEGKDSNLSPLLACY  194 (200)
Q Consensus       131 ~~~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~  194 (200)
                      ...    +.......|+.++.++++++...+++.+++.|+..+..+          ..+.+.|+.+|...|.+++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~  155 (307)
T d1eq2a_          78 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQIL  155 (307)
T ss_dssp             CCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHHHHHHHHHG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence            543    234456778999999999999999876666665543322          2466789999999999999763

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.7e-15  Score=115.95  Aligned_cols=140  Identities=12%  Similarity=0.005  Sum_probs=102.7

Q ss_pred             CCCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      ..+|+++||||+|  +||.++++.|+++|++|++.+|+.+....    .........+..|+.+..++...+.       
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            4689999999998  89999999999999999999998543211    1123467788889999887776654       


Q ss_pred             CCCEEEEccccCCC---------------CcccchhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchhhhH
Q 029008          121 GVTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGK  183 (200)
Q Consensus       121 ~~d~vi~~ag~~~~---------------~~~~~~~n~~~~~~~~~~a~~~--~~~~~v~vSS~~~~~~~~~~~~Y~~sK  183 (200)
                      .+|++||+++....               +...+.+|+.+...+.+++...  ..+.+|++||.....+.+....|+.+|
T Consensus        83 ~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~~~~Y~~sK  162 (258)
T d1qsga_          83 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAK  162 (258)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHHHH
T ss_pred             ccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCCCcHHHHHHH
Confidence            46999999975321               1223456677777777766543  234688888864444555667899999


Q ss_pred             HhhHHHHHhh
Q 029008          184 DSNLSPLLAC  193 (200)
Q Consensus       184 ~~~E~~~~~~  193 (200)
                      ++++.+++..
T Consensus       163 aal~~ltr~l  172 (258)
T d1qsga_         163 ASLEANVRYM  172 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.55  E-value=1.2e-14  Score=112.76  Aligned_cols=140  Identities=13%  Similarity=-0.006  Sum_probs=96.6

Q ss_pred             CCCCeEEEEccC--chhHHHHHHHHHHCCCcEEEeecCCCCccc---ccCCCCeeEEEccCCCHHHHHHHhc--------
Q 029008           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD--------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~--------  120 (200)
                      ..+|+++||||+  .+||.+++++|+++|++|++.+|+..+..+   +....+...+++|+.++++++.+++        
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~   83 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   83 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcccc
Confidence            578999999965  479999999999999999999988654211   3334578889999999877665543        


Q ss_pred             --CCCEEEEccccCC----CC-----------cccchhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcCCcCCcchhhh
Q 029008          121 --GVTAVISCVGGFG----SN-----------SYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVANYLLQGYYEG  182 (200)
Q Consensus       121 --~~d~vi~~ag~~~----~~-----------~~~~~~n~~~~~~~~~~a~~~~-~~~~v~vSS~~~~~~~~~~~~Y~~s  182 (200)
                        .+|+++||+|...    ..           ...+.+|........+...... ...+++++|.......+....|+.+
T Consensus        84 ~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p~~~~y~~s  163 (268)
T d2h7ma1          84 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVA  163 (268)
T ss_dssp             TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTTTHHHHHH
T ss_pred             CCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCcccchhhcc
Confidence              3799999998532    11           1123444555554555544332 2244555554444555667889999


Q ss_pred             HHhhHHHHHhh
Q 029008          183 KDSNLSPLLAC  193 (200)
Q Consensus       183 K~~~E~~~~~~  193 (200)
                      |++.+.+.+..
T Consensus       164 K~a~~~ltr~l  174 (268)
T d2h7ma1         164 KSALESVNRFV  174 (268)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccchhhccccc
Confidence            99999998863

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.55  E-value=2.2e-17  Score=122.72  Aligned_cols=141  Identities=16%  Similarity=0.017  Sum_probs=93.3

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      ....+|+++||||+|+||..+++.|+++|++|++++|+.++..+    .....++.+..+|+.|.+.+++++.++|+|||
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            34678999999999999999999999999999999999655221    01123566788999999999999999999999


Q ss_pred             ccccCC------CCcccchhhHHHHHHHHHHHHHcCC---CEEEEEe-ccccCcCCcCCcchhhhHHhhHHHHHh
Q 029008          128 CVGGFG------SNSYMYKINGTANINAIRAASEKGV---KRFVYIS-AADFGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       128 ~ag~~~------~~~~~~~~n~~~~~~~~~~a~~~~~---~~~v~vS-S~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      |+|...      .|+..+++|+.+..+....+.....   .....++ +..++....+...|..+|.+.+++..+
T Consensus        99 ~Ag~g~~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~y~~sk~a~~~l~~s  173 (191)
T d1luaa1          99 AGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHRACIAKLFES  173 (191)
T ss_dssp             CCCTTCCCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTTCEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cCccccccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhccCcEEecceEEEeccCcCcHHHHHHHHHHHHHHhc
Confidence            998532      2233445554443332222111111   1222222 222333222334699999998887654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.55  E-value=1.2e-14  Score=113.20  Aligned_cols=139  Identities=12%  Similarity=0.009  Sum_probs=93.4

Q ss_pred             CCCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCCccc----ccCCCCeeEEEccCCCHHHHHHHhc-------
Q 029008           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (200)
Q Consensus        54 ~~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~-------  120 (200)
                      .++|++|||||+|  +||.+++++|+++|++|++++|++.....    ........++.+|+++.++++++++       
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            4789999999877  89999999999999999999998543111    1123467788999999988887764       


Q ss_pred             CCCEEEEccccCCCC----------cccc----hhhHHHHHHHHHHHHHc-CCCE-EEEEeccccCcCCcCCcchhhhHH
Q 029008          121 GVTAVISCVGGFGSN----------SYMY----KINGTANINAIRAASEK-GVKR-FVYISAADFGVANYLLQGYYEGKD  184 (200)
Q Consensus       121 ~~d~vi~~ag~~~~~----------~~~~----~~n~~~~~~~~~~a~~~-~~~~-~v~vSS~~~~~~~~~~~~Y~~sK~  184 (200)
                      .+|++|||+|.....          ...+    .++......+.....+. +... ++.+|+.....+.+....|+.+|+
T Consensus        83 ~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~y~asK~  162 (274)
T d2pd4a1          83 SLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKA  162 (274)
T ss_dssp             CEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHHHHHH
T ss_pred             CCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccccccccccchhhhHHHH
Confidence            589999999964311          1111    11222223333333222 2223 555555433444555678999999


Q ss_pred             hhHHHHHh
Q 029008          185 SNLSPLLA  192 (200)
Q Consensus       185 ~~E~~~~~  192 (200)
                      +++.+++.
T Consensus       163 al~~ltr~  170 (274)
T d2pd4a1         163 ALESAVRY  170 (274)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999886

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.51  E-value=4.3e-14  Score=109.26  Aligned_cols=137  Identities=15%  Similarity=0.168  Sum_probs=92.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCC----HHHHHHHh------
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLS----SDSWKEAL------  119 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d----~~~~~~~~------  119 (200)
                      ++++||||+++||.+++++|+++|++|++++|+.++..+       ............|+.+    .+.+.+++      
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999998654211       1224466667766654    33343333      


Q ss_pred             -cCCCEEEEccccCCCC---------------------cccchhhHHHHHHHHHHHHHc---------CCCEEEEEeccc
Q 029008          120 -DGVTAVISCVGGFGSN---------------------SYMYKINGTANINAIRAASEK---------GVKRFVYISAAD  168 (200)
Q Consensus       120 -~~~d~vi~~ag~~~~~---------------------~~~~~~n~~~~~~~~~~a~~~---------~~~~~v~vSS~~  168 (200)
                       .++|++|||||.....                     ...+..|..+...........         ....++.+|+..
T Consensus        82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (266)
T d1mxha_          82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM  161 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred             hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence             3699999999954210                     112344545444444443221         123566777655


Q ss_pred             cCcCCcCCcchhhhHHhhHHHHHhh
Q 029008          169 FGVANYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       169 ~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      ...+.+....|+.||++++.+.+..
T Consensus       162 ~~~~~~~~~~Y~asKaal~~lt~~l  186 (266)
T d1mxha_         162 TDLPLPGFCVYTMAKHALGGLTRAA  186 (266)
T ss_dssp             GGSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCcchhhhhhhHHHHhhhHHHH
Confidence            5556667789999999999998864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.47  E-value=2.1e-13  Score=107.04  Aligned_cols=141  Identities=5%  Similarity=-0.099  Sum_probs=92.2

Q ss_pred             CCCCCCeEEEEccCc--hhHHHHHHHHHHCCCcEEEeecCCCC------------ccccc----CCCCe-eEEEcc--C-
Q 029008           52 PPPPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRS------------SLRDS----WANNV-IWHQGN--L-  109 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G--~iG~~l~~~L~~~g~~V~~~~r~~~~------------~~~~~----~~~~~-~~~~~D--l-  109 (200)
                      ...++|+++||||+|  +||.++++.|+++|++|++.+|+...            .....    ..... ....+|  + 
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence            456889999999887  99999999999999999998875311            00000    00111 122222  1 


Q ss_pred             -----------------CCHHHHH-------HHhcCCCEEEEccccCC------------CCcccchhhHHHHHHHHHHH
Q 029008          110 -----------------LSSDSWK-------EALDGVTAVISCVGGFG------------SNSYMYKINGTANINAIRAA  153 (200)
Q Consensus       110 -----------------~d~~~~~-------~~~~~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a  153 (200)
                                       .+...++       +.+.++|++|||||...            .|...+++|+.+.+.+.+++
T Consensus        84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~  163 (297)
T d1d7oa_          84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF  163 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence                             1221222       23347899999998532            23457789999999999988


Q ss_pred             HHcCC--CEEEEEeccc-cCcCCcCCcchhhhHHhhHHHHHh
Q 029008          154 SEKGV--KRFVYISAAD-FGVANYLLQGYYEGKDSNLSPLLA  192 (200)
Q Consensus       154 ~~~~~--~~~v~vSS~~-~~~~~~~~~~Y~~sK~~~E~~~~~  192 (200)
                      .....  +.++.+++.. .....+....|..+|++++.+.+.
T Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~y~~aKaa~~~l~~~  205 (297)
T d1d7oa_         164 LPIMNPGGASISLTYIASERIIPGYGGGMSSAKAALESDTRV  205 (297)
T ss_dssp             GGGEEEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCcceeeeehhhcccccccccceecccccccccccc
Confidence            65432  2455555533 333445667899999999988875

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.46  E-value=1.2e-13  Score=110.39  Aligned_cols=138  Identities=9%  Similarity=-0.031  Sum_probs=93.2

Q ss_pred             CCeEEEEc--cCchhHHHHHHHHHHCCCcEEEeecCCCCc------------cc-----ccCCCCeeEEE----------
Q 029008           56 SEKLLVLG--GNGFVGSHICREALDRGLTVASLSRSGRSS------------LR-----DSWANNVIWHQ----------  106 (200)
Q Consensus        56 ~~~ilVtG--a~G~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~-----~~~~~~~~~~~----------  106 (200)
                      .|.+||||  ++.+||.++++.|+++|++|++..+.....            ..     ...........          
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence            57899999  447999999999999999999987653210            00     00011112222          


Q ss_pred             ----------ccCCCHHHHHHH-------hcCCCEEEEccccCC------------CCcccchhhHHHHHHHHHHHHHcC
Q 029008          107 ----------GNLLSSDSWKEA-------LDGVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASEKG  157 (200)
Q Consensus       107 ----------~Dl~d~~~~~~~-------~~~~d~vi~~ag~~~------------~~~~~~~~n~~~~~~~~~~a~~~~  157 (200)
                                +|+.+.++++++       +.++|++|||+|...            +|+..+++|+.+.+.+.+++.+.-
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m  161 (329)
T d1uh5a_          82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM  161 (329)
T ss_dssp             CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred             cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence                      255555444444       347899999998532            234567899999999989886652


Q ss_pred             --CCEEEEEeccccCcCCc-CCcchhhhHHhhHHHHHhh
Q 029008          158 --VKRFVYISAADFGVANY-LLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       158 --~~~~v~vSS~~~~~~~~-~~~~Y~~sK~~~E~~~~~~  193 (200)
                        .++||++||.......+ ....|+.+|++++.+++..
T Consensus       162 ~~~GsIv~iss~~~~~~~p~y~~~y~asKaal~~ltr~l  200 (329)
T d1uh5a_         162 KPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTRVL  200 (329)
T ss_dssp             EEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHH
T ss_pred             ccccccccceeehhcccccccchhhhhhhccccccchhh
Confidence              24899999854333322 2467999999999998863

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.41  E-value=1.2e-12  Score=100.42  Aligned_cols=126  Identities=13%  Similarity=0.093  Sum_probs=86.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh--------cCCCEEEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL--------DGVTAVIS  127 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--------~~~d~vi~  127 (200)
                      ||.|+||||+++||++++++|+++|++|++++|+..+.            ..|+.+.+......        ..+|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~------------~~d~~~~~~~~~~~~~~~~~~~~~id~lv~   68 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV------------IADLSTAEGRKQAIADVLAKCSKGMDGLVL   68 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE------------ECCTTSHHHHHHHHHHHHTTCTTCCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH------------HHHhcCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            68999999999999999999999999999999875432            34777765554432        24899999


Q ss_pred             ccccCC---CCcccchhhHHHHHHHHHHH----HHcCCCEEEEEeccccC----------------------------cC
Q 029008          128 CVGGFG---SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFG----------------------------VA  172 (200)
Q Consensus       128 ~ag~~~---~~~~~~~~n~~~~~~~~~~a----~~~~~~~~v~vSS~~~~----------------------------~~  172 (200)
                      |||...   .+.....+|..+...+.+..    .+........+++....                            ..
T Consensus        69 ~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~  148 (257)
T d1fjha_          69 CAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGE  148 (257)
T ss_dssp             CCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCT
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCC
Confidence            998643   23345567777766655543    33334455555542100                            01


Q ss_pred             CcCCcchhhhHHhhHHHHHhh
Q 029008          173 NYLLQGYYEGKDSNLSPLLAC  193 (200)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~  193 (200)
                      .+....|+.+|++++.+.+..
T Consensus       149 ~~~~~~Y~asKaal~~ltr~l  169 (257)
T d1fjha_         149 QGGNLAYAGSKNALTVAVRKR  169 (257)
T ss_dssp             THHHHHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHhhhhhcccccc
Confidence            112346999999999999863

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.76  E-value=1.3e-08  Score=69.93  Aligned_cols=96  Identities=14%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccccCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFGSN  135 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag~~~~~  135 (200)
                      |+|+|+|+ |.+|+.+++.|.++|++|++++++++.........+..++.+|.+|++.++++ ++.+|.++-+...    
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~----   75 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK----   75 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC----
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc----
Confidence            68999998 99999999999999999999999865422111112678999999999999987 5789988885332    


Q ss_pred             cccchhhHHHHHHHHHHHHHcCCCEEEEE
Q 029008          136 SYMYKINGTANINAIRAASEKGVKRFVYI  164 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~~~~~~~v~v  164 (200)
                         -+.|+..    ...++..+.+++|-.
T Consensus        76 ---d~~N~~~----~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          76 ---EEVNLMS----SLLAKSYGINKTIAR   97 (132)
T ss_dssp             ---HHHHHHH----HHHHHHTTCCCEEEE
T ss_pred             ---HHHHHHH----HHHHHHcCCceEEEE
Confidence               1334332    335566777776643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=2.1e-07  Score=63.66  Aligned_cols=72  Identities=17%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      |+++|+|+ |.+|+.+++.|.++|++|++++.+++...+ .......++.+|.++++.+.++ ++++|.+|-+.+
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~-~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNA-YASYATHAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHH-TTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHH-HHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence            57899987 999999999999999999999988655322 2234567888999999999887 778998887654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.56  E-value=1.6e-07  Score=65.48  Aligned_cols=108  Identities=17%  Similarity=0.206  Sum_probs=75.5

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc-ccC-CCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR-DSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ||.|+||+|.+|..++..|..+|.  ++++++.++.+... ... ...+.....-+ ...+..+.++++|+||.++|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~-~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYL-GPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEE-SGGGHHHHHTTCSEEEECCSCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEE-cCCChHHHhCCCCEEEECCCcCC
Confidence            789999999999999999998885  78888875432110 111 11111111112 34566788899999999999543


Q ss_pred             ----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          134 ----SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       134 ----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                          .....++.|......+++.+.+++.+-+|.+-|
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt  117 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS  117 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence                235678899999999999999998775555554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.38  E-value=4.4e-07  Score=64.58  Aligned_cols=74  Identities=19%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .|+|+|.|| |.+|..+++.|.++|++|++++|+.++.... ...........+..+.......+...|.++.+..
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~   76 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP   76 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence            589999997 9999999999999999999999997653321 1223455566677777888888888898887654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=7.8e-06  Score=52.17  Aligned_cols=87  Identities=21%  Similarity=0.281  Sum_probs=62.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ..+|+|+|.|. |..|..+++.|.++|++|++.+.+............+.+..... +.    ..+.++|.||..-|...
T Consensus         3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1           3 YQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSL-ND----EWLMAADLIVASPGIAL   76 (93)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBC-CH----HHHHHCSEEEECTTSCT
T ss_pred             cCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeeccc-ch----hhhccCCEEEECCCCCC
Confidence            46789999998 88999999999999999999998766543333334555555543 22    34567899999888632


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCC
Q 029008          134 SNSYMYKINGTANINAIRAASEKGV  158 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~  158 (200)
                      +.            .+++.|+++|+
T Consensus        77 ~~------------~~~~~a~~~gi   89 (93)
T d2jfga1          77 AH------------PSLSAAADAGI   89 (93)
T ss_dssp             TS------------HHHHHHHHTTC
T ss_pred             CC------------HHHHHHHHcCC
Confidence            11            34677777776

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.29  E-value=2.2e-06  Score=59.64  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=72.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcc------c--ccCCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL------R--DSWANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~------~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      ..+||.|+|+ |.+|..++..|+.+|  .+|++++++++...      +  ........+...|+       +.++++|+
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-------~~~~~adi   75 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-------SDCKDADL   75 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-------GGGTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-------HHhccccE
Confidence            3569999996 999999999999988  58999998764311      0  11122344555553       24678999


Q ss_pred             EEEccccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          125 VISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       125 vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ||.++|....    ....+..|..-...+++...+.+.+-++.+-|
T Consensus        76 vvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            9999986432    34567888888888999999888776665554

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.27  E-value=4.9e-06  Score=57.68  Aligned_cols=105  Identities=14%  Similarity=0.056  Sum_probs=72.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcc-c----------ccCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL-R----------DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~----------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      +||.|+||+|.+|..++..|+.+|  .++.+++++++... +          ......++....--.|    .+.++++|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d----~~~l~~aD   76 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN----LRIIDESD   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC----GGGGTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch----HHHhccce
Confidence            579999999999999999999998  48899888743210 0          1112233332211112    24677999


Q ss_pred             EEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       124 ~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                      +||.+||....+    ...++.|..-...+++...+.+.+.++.+|
T Consensus        77 vVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivVt  122 (145)
T d1hyea1          77 VVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT  122 (145)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECS
T ss_pred             EEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEEc
Confidence            999999964432    345788888888889998888776665553

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=7.2e-06  Score=56.86  Aligned_cols=97  Identities=16%  Similarity=0.251  Sum_probs=55.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-C---cEEEeecCCCCcccccC-CCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-L---TVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ||+|.|.||||++|+.+++.|+++. +   +++++.++......... ....  ...++.+.+    .++++|++|.+++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~--~~~~~~~~~----~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTG--TLQDAFDLE----ALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCC--BCEETTCHH----HHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCce--eeecccchh----hhhcCcEEEEecC
Confidence            6799999999999999999888764 2   55655554333111111 1111  112233332    3578999999886


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccC
Q 029008          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG  170 (200)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~  170 (200)
                      ..            -...+...+.+.|++-+|.=.|+.|.
T Consensus        75 ~~------------~s~~~~~~~~~~g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          75 GD------------YTNEIYPKLRESGWQGYWIDAASSLR  102 (146)
T ss_dssp             HH------------HHHHHHHHHHHTTCCCEEEECSSTTT
T ss_pred             ch------------HHHHhhHHHHhcCCCeecccCCcccc
Confidence            41            12345666667776533333334443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=5.2e-06  Score=57.54  Aligned_cols=105  Identities=17%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-C--CcEEEeecCCCCccc-----ccC-CCCeeEEEccCCCHHHHHHHhcCCCEEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-G--LTVASLSRSGRSSLR-----DSW-ANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~-----~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~  127 (200)
                      +||.|+|++|.+|..++..|..+ +  .++.+++..+....+     +.. ......+    ...+++ +.+++.|+||.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~----~~~~~~-~~~~~aDvvvi   75 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF----SGEDAT-PALEGADVVLI   75 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEE----CSSCCH-HHHTTCSEEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEE----EcCCCc-cccCCCCEEEE
Confidence            58999999999999999887643 3  688888875322110     110 1112221    112223 36789999999


Q ss_pred             ccccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          128 CVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       128 ~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ++|....    ....+..|..-...+++.+.+.+.+.+|.+-|
T Consensus        76 taG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt  118 (145)
T d2cmda1          76 SAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT  118 (145)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence            9996432    24677889988899999998887665444433

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.11  E-value=1.1e-05  Score=56.03  Aligned_cols=102  Identities=14%  Similarity=0.275  Sum_probs=72.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------c---ccCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------R---DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      .++||.|+|+ |.+|..++..|+.+|.  ++.+++++++...      .   ......+.+...|.       +.++++|
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~daD   76 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDAD   76 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTCS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccce
Confidence            4679999997 9999999999999875  7999888754311      0   11123444544443       3577899


Q ss_pred             EEEEccccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEE
Q 029008          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYI  164 (200)
Q Consensus       124 ~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~v  164 (200)
                      +||.++|....    ....+..|..-...+++...+.+.+.++.+
T Consensus        77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~iv  121 (148)
T d1ldna1          77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLV  121 (148)
T ss_dssp             EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEE
Confidence            99999996432    345677888888888888888876644444

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.09  E-value=3.1e-05  Score=54.03  Aligned_cols=107  Identities=18%  Similarity=0.165  Sum_probs=73.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      .+.+||.|+|+ |.+|..++..|..++. ++++++.+++....         ............     .+.++.+++.|
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~ad   78 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE-----YSYEAALTGAD   78 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE-----CSHHHHHTTCS
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc-----CchhhhhcCCC
Confidence            35679999997 9999999988888884 88888877653211         001112222211     12456788999


Q ss_pred             EEEEccccCCC---------CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          124 AVISCVGGFGS---------NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~~---------~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +|+.++|....         ....+..|..-...+++.+.+.+.+-++.+-|
T Consensus        79 iVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          79 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             eEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            99999986432         23466778888888999998888776666555

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.03  E-value=1.3e-06  Score=62.70  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      |||.|+||+|.+|.++++.|+++|++|++.+|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            578999888999999999999999999999998654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.02  E-value=3.1e-05  Score=53.27  Aligned_cols=102  Identities=11%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc------c--cCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D--SWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      +||.|+|+ |.+|..++..|+.+|.  ++.+++++.+....      +  ..........+|       .+.++++|+||
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~-------~~~~~~adivv   73 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD-------YSDVKDCDVIV   73 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C-------GGGGTTCSEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc-------HHHhCCCceEE
Confidence            58999997 9999999999999975  89999987754211      1  111233333332       23577899999


Q ss_pred             EccccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          127 SCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       127 ~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .++|....    ....+..|..-...+++.+.+.+.+-++.+-|
T Consensus        74 itag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          74 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             ECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             EecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            99996432    23456788888888899988887765444443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=7.9e-06  Score=56.88  Aligned_cols=73  Identities=19%  Similarity=0.260  Sum_probs=59.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc---ccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS---LRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~ag  130 (200)
                      .+|+|+|. |-+|..+++.|.++|++|++++.+++..   .+.....++.++.+|.+|++.++++ ++.+|.+|-+.+
T Consensus         4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~   80 (153)
T d1id1a_           4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccc
Confidence            47999998 8999999999999999999998876431   1222346899999999999998865 567999988753

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.01  E-value=2.1e-05  Score=54.20  Aligned_cols=102  Identities=16%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------c----ccCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------R----DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~----~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      ||.|+||+|.+|..++..|..+|.  ++.+++.......      +    ........+...|.   +    .++++|+|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~----~~~~aDiV   74 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---E----DTAGSDVV   74 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---G----GGTTCSEE
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---H----HhhhcCEE
Confidence            789999999999999999999985  6888775322100      0    11234455554443   2    35799999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |.+||....+    ...++.|..-...+++...+.+.+-++.+-|
T Consensus        75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence            9999965433    3467888888888899998887665444433

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=4.1e-05  Score=50.42  Aligned_cols=70  Identities=19%  Similarity=0.351  Sum_probs=56.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~  127 (200)
                      +...+|.|.|| |.+|+-++....+.|++|++++.+++.+...   -.-+++.+|+.|.+.+.++..  ++|+|-.
T Consensus         9 ~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~~---va~~~i~~~~~d~~~l~~~~~~~~~DviT~   80 (111)
T d1kjqa2           9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAMH---VAHRSHVINMLDGDALRRVVELEKPHYIVP   80 (111)
T ss_dssp             TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGGG---GSSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchhh---cCCeEEECCCCCHHHHHHHHHhhCCceEEE
Confidence            34568999997 9999999999999999999999887654321   123678899999999988774  5799965

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.95  E-value=3.7e-05  Score=52.84  Aligned_cols=103  Identities=12%  Similarity=0.033  Sum_probs=70.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      +||.|+|+ |.+|..++..|+.+|  .++.+++.+++....         ........+...+  |.    +.++++|++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~--~~----~~~~dadvv   73 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSN--DY----ADTANSDIV   73 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEES--CG----GGGTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecC--CH----HHhcCCeEE
Confidence            57999996 999999999999997  489999987754211         0012233443322  22    346799999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |.++|....+    ...++.|..-...+++...+.+.+-++.+-|
T Consensus        74 vitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1guza1          74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (142)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             EEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence            9999964322    3456778877888888888887665555443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6.8e-06  Score=58.46  Aligned_cols=76  Identities=20%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh---c--CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL---D--GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~--~~d~vi~~  128 (200)
                      ..+.+|+|+||+|.+|...++.+...|++|+++++++++. +....-++..+ .|..+++..+++.   .  ++|++|.+
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~-~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCEEEEEeccccccccccccccccCccccccccccccc-ccccccCcccc-cccccccHHHHhhhhhccCCceEEeec
Confidence            3567999999999999999999999999999999875432 11111122211 2666655444433   2  48999998


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      .|.
T Consensus       105 ~g~  107 (174)
T d1yb5a2         105 LAN  107 (174)
T ss_dssp             CHH
T ss_pred             ccH
Confidence            874

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.89  E-value=9.1e-06  Score=57.75  Aligned_cols=74  Identities=22%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .+.+|+|+||+|.+|...++.+...|++|+++++++++..... .-+++.+ .|..+.........++|+||.+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-~lGa~~~-i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEA-ATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEE-EEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-cccccee-eehhhhhhhhhccccccccccccc
Confidence            5679999999999999999999999999999998765422111 1122211 244443322334467999999877

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.89  E-value=1.5e-05  Score=55.10  Aligned_cols=91  Identities=14%  Similarity=0.147  Sum_probs=52.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .++|.|.||||++|+.+++.|.+++|   ++..+..+...-... .......+.  ++   +  ...+.++|++|.+++.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~--~~---~--~~~~~~~d~vf~a~p~   74 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVG--DV---D--SFDFSSVGLAFFAAAA   74 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECE--EG---G--GCCGGGCSEEEECSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhc--cc---h--hhhhccceEEEecCCc
Confidence            47899999999999999999987654   666654433221111 001111111  11   1  1235678999988754


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            ........+.+.|+ ++|-.|+
T Consensus        75 ~------------~s~~~~~~~~~~g~-~VID~Ss   96 (144)
T d2hjsa1          75 E------------VSRAHAERARAAGC-SVIDLSG   96 (144)
T ss_dssp             H------------HHHHHHHHHHHTTC-EEEETTC
T ss_pred             c------------hhhhhccccccCCc-eEEeech
Confidence            1            12334455555564 6666665

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=3.5e-05  Score=52.86  Aligned_cols=102  Identities=18%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCccc--------ccCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      +||.|+|+ |.+|..++..|+.++  .++.+++.+++....        ............|   .    +.++++|+||
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~----~~~~~adivv   72 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---Y----ADLKGSDVVI   72 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---G----GGGTTCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---H----HHhcCCCEEE
Confidence            58899997 999999999999887  488888877543110        0112234444433   2    3477999999


Q ss_pred             EccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       127 ~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .++|....+    ...+..|..-...+++...+.+.+-++.+-|
T Consensus        73 itag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          73 VAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             ECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence            999974432    3456778877888888888888776665544

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.84  E-value=4.8e-05  Score=52.57  Aligned_cols=102  Identities=15%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcc------c---ccCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL------R---DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~------~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      |||.|+|+ |.+|..++..|+.+|  .++.+++.+++...      .   ............|   .    +.++++|+|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~----~~l~~adiV   73 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---W----AALADADVV   73 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---G----GGGTTCSEE
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---H----HHhccccEE
Confidence            78999996 999999999999887  47888887654311      0   1112233444433   2    346789999


Q ss_pred             EEccccCC--------CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFG--------SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~--------~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |.++|...        .....++.|..-...+++...+.+.+-++.+-|
T Consensus        74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            99999543        113356778888888888888888765555554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.83  E-value=3.1e-05  Score=54.95  Aligned_cols=74  Identities=15%  Similarity=0.052  Sum_probs=49.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      .|+|.|+|+ |.+|..++..|.++|++|.+.+|+++....       ..................++.+.++++|++|.+
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            379999998 999999999999999999999997543111       000111111111111123457788899999997


Q ss_pred             cc
Q 029008          129 VG  130 (200)
Q Consensus       129 ag  130 (200)
                      ..
T Consensus        80 v~   81 (184)
T d1bg6a2          80 VP   81 (184)
T ss_dssp             SC
T ss_pred             Ec
Confidence            64

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=6.3e-05  Score=55.66  Aligned_cols=65  Identities=17%  Similarity=0.143  Sum_probs=46.6

Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH----HHhcCCCEEEEccccCC
Q 029008           63 GGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK----EALDGVTAVISCVGGFG  133 (200)
Q Consensus        63 Ga~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~----~~~~~~d~vi~~ag~~~  133 (200)
                      -.+|.+|.+|++++..+|++|+++.-......    +..+..+..  ...+++.    +.+..+|++|++|+..+
T Consensus        29 ~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~----p~~~~~~~~--~t~~~m~~~~~~~~~~~D~~i~aAAvsD   97 (223)
T d1u7za_          29 HSSGKMGFAIAAAAARRGANVTLVSGPVSLPT----PPFVKRVDV--MTALEMEAAVNASVQQQNIFIGCAAVAD   97 (223)
T ss_dssp             CCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC----CTTEEEEEC--CSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             CCcHHHHHHHHHHHHHcCCchhhhhcccccCc----cccccccee--hhhHHHHHHHHhhhccceeEeeeechhh
Confidence            45899999999999999999999876544321    345666543  3443333    44568999999998643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.81  E-value=0.00017  Score=50.39  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=71.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------cc---cCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD---SWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      +.++|.|+|+ |.+|..++..|..+|.  ++.+++++++...      .+   ...........|   .    +.++++|
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d---~----~~~~~ad   90 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD---Y----SVTANSK   90 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS---G----GGGTTCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc---h----hhccccc
Confidence            4569999996 9999999999999985  8998888754311      00   112222222233   2    3477899


Q ss_pred             EEEEccccCCC----CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +||.+||....    ....++.|..-...++....+.+.+-++.+-|
T Consensus        91 iVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            99999996542    24566778888888888888887664444443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.80  E-value=4.4e-06  Score=58.85  Aligned_cols=72  Identities=19%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+++|+|+|+ |.+|..+++.|.+.|. ++++..|+.++.......-+..+     .+.+++.+.+.++|+||.+.+.
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~-----~~~~~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEA-----VRFDELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEE-----CCGGGHHHHHHTCSEEEECCSS
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhccc-----ccchhHHHHhccCCEEEEecCC
Confidence            57889999998 9999999999999998 58888887554221111112222     2345678888999999999775

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.79  E-value=1.5e-05  Score=57.05  Aligned_cols=78  Identities=21%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-ccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag  130 (200)
                      ..+.+|+|+||+|.+|...++.....|++|+++++++++... ........+..-|-...+.+.+...  ++|+||.+.|
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG  107 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  107 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence            357799999999999999999999999999999987654211 1111122222222222333333333  5999999987


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus       108 ~  108 (182)
T d1v3va2         108 G  108 (182)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.78  E-value=8e-05  Score=51.20  Aligned_cols=103  Identities=16%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------cc--cCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD--SWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      .||.|+|+ |.+|..++..|+.+|.  ++.+++++++...      ++  .......+...+  +   + +.++++|+||
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~---~-~~~~daDvVV   74 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--D---P-EICRDADMVV   74 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--C---G-GGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--C---H-HHhhCCcEEE
Confidence            47999997 9999999999999985  8999888764311      00  011223333222  1   2 3467899999


Q ss_pred             EccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       127 ~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .++|....+    ...+..|..-...+++...+.+.+.++.+-|
T Consensus        75 itaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          75 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            999975432    3567788888888888888888765554443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.78  E-value=0.00012  Score=52.09  Aligned_cols=106  Identities=13%  Similarity=0.093  Sum_probs=66.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC---C----cEEEeecCCCCcc--------cccCCCCe-eEEEccCCCHHHHHHH
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG---L----TVASLSRSGRSSL--------RDSWANNV-IWHQGNLLSSDSWKEA  118 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g---~----~V~~~~r~~~~~~--------~~~~~~~~-~~~~~Dl~d~~~~~~~  118 (200)
                      ...+|.||||+|.+|..++..|+...   .    .+.+++.......        +....... ..+..     .+..+.
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~-----~~~~~~   97 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-----IDPYEV   97 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-----SCHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc-----ccchhh
Confidence            34589999999999999999998753   2    3444444332110        01111111 11111     124678


Q ss_pred             hcCCCEEEEccccCCC----CcccchhhHHHHHHHHHHHHHcCC-C-EEEEEe
Q 029008          119 LDGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKGV-K-RFVYIS  165 (200)
Q Consensus       119 ~~~~d~vi~~ag~~~~----~~~~~~~n~~~~~~~~~~a~~~~~-~-~~v~vS  165 (200)
                      ++++|+||..+|....    ....++.|..-...+.+++.+... . +++.+|
T Consensus        98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            8999999999986543    355778888888888999888643 3 444444

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=5.7e-05  Score=52.21  Aligned_cols=41  Identities=22%  Similarity=0.385  Sum_probs=36.8

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      .+..+++|.|+||.|.+|..+++.|.+.||+|.+.+|+...
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~   45 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA   45 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence            34678899999999999999999999999999999987654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.75  E-value=0.0001  Score=50.59  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=68.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhcCCCEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  126 (200)
                      ++|.|+|+ |.+|..++..|+.++. ++.+++.+++....         ........+...+  |.    +.+++.|+||
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~--d~----~~~~~advvv   74 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTN--NY----ADTANSDVIV   74 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEES--CG----GGGTTCSEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecC--cH----HHhcCCCEEE
Confidence            68999997 9999999999988874 88888877654211         0011222333211  12    2456899999


Q ss_pred             EccccCC----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          127 SCVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       127 ~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      -+||...    .....+..|..-...+++...+.+.+-++.+.|
T Consensus        75 itag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          75 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             ECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             EeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence            9999643    234567888888888899998887766655544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=4.8e-05  Score=54.41  Aligned_cols=76  Identities=14%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc------c-cCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      ..+++|+|.|+ |+.|++++..|.+.|. ++++..|+.+....      . ...........|+.+.+.+...+..+|+|
T Consensus        16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii   94 (182)
T d1vi2a1          16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL   94 (182)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence            46789999998 8999999999999997 67788887654211      0 01123445667899999999999999999


Q ss_pred             EEccc
Q 029008          126 ISCVG  130 (200)
Q Consensus       126 i~~ag  130 (200)
                      ||+..
T Consensus        95 IN~Tp   99 (182)
T d1vi2a1          95 TNGTK   99 (182)
T ss_dssp             EECSS
T ss_pred             ccccC
Confidence            99965

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.74  E-value=0.00016  Score=47.49  Aligned_cols=94  Identities=18%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+++|+|+|+ |.+|..-++.|++.|++|++++....+.... ....+++++..++.+.     .+.+++.|+.+.+..
T Consensus        10 l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----dl~~~~lv~~at~d~   83 (113)
T d1pjqa1          10 LRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET-----LLDSCWLAIAATDDD   83 (113)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGG-----GGTTCSEEEECCSCH
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHH-----HhCCCcEEeecCCCH
Confidence            46899999998 9999999999999999999988766543322 2235678887666432     356788888764321


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                                 .-...+.+.|++.|+  +|++..
T Consensus        84 -----------~~n~~i~~~a~~~~i--lVNv~D  104 (113)
T d1pjqa1          84 -----------TVNQRVSDAAESRRI--FCNVVD  104 (113)
T ss_dssp             -----------HHHHHHHHHHHHTTC--EEEETT
T ss_pred             -----------HHHHHHHHHHHHcCC--EEEeCC
Confidence                       112345677777754  777664

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.72  E-value=1.7e-05  Score=56.61  Aligned_cols=76  Identities=22%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCH-HHHHHHh--cCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS-DSWKEAL--DGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~--~~~d~vi~~ag  130 (200)
                      ..+.+|||+||+|++|...++.+...|.+|++..+++++........--.++  |..+. +......  +++|+||.+.|
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi--~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVL--AREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEE--ECC---------CCSCCEEEEEECST
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceee--ecchhHHHHHHHhhccCcCEEEEcCC
Confidence            3467999999999999999999999999999999887663221111111222  22221 1111222  26899999988


Q ss_pred             c
Q 029008          131 G  131 (200)
Q Consensus       131 ~  131 (200)
                      .
T Consensus       108 g  108 (176)
T d1xa0a2         108 G  108 (176)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=6.2e-05  Score=48.18  Aligned_cols=74  Identities=14%  Similarity=0.156  Sum_probs=52.6

Q ss_pred             CCCCCeEEEEccCchhH-HHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVG-SHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG-~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ....++|.+.|- |++| .+|++.|.++|++|.+.++......+.....++.+..++  +++    .+++.|.||...+.
T Consensus         5 ~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~--~~~----~i~~~d~vV~S~AI   77 (96)
T d1p3da1           5 MRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGH--AEE----HIEGASVVVVSSAI   77 (96)
T ss_dssp             CTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESC--CGG----GGTTCSEEEECTTS
T ss_pred             chhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECC--ccc----cCCCCCEEEECCCc
Confidence            346789999996 6666 668999999999999999876543333334566666544  233    24678999998876


Q ss_pred             CC
Q 029008          132 FG  133 (200)
Q Consensus       132 ~~  133 (200)
                      ..
T Consensus        78 ~~   79 (96)
T d1p3da1          78 KD   79 (96)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.70  E-value=0.00052  Score=47.18  Aligned_cols=93  Identities=19%  Similarity=0.276  Sum_probs=52.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC-C---cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG-L---TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      |+|.|.||||++|+.+++.|++.. |   ++..+..+.............. ...+..+.    ..++++|++|.|.+..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~-~~~~~~~~----~~~~~~DvvF~alp~~   75 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAG-MLHDAFDI----ESLKQLDAVITCQGGS   75 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCC-BCEETTCH----HHHTTCSEEEECSCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcce-eeecccch----hhhccccEEEEecCch
Confidence            579999999999999999888753 3   4444443322211111111111 11122232    3467899999987541


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 029008          133 GSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (200)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~a~~~~~~-~~v~vSS  166 (200)
                                  -+..+...+.+.|.+ .+|=.|+
T Consensus        76 ------------~s~~~~~~l~~~g~~~~VIDlSs   98 (147)
T d1mb4a1          76 ------------YTEKVYPALRQAGWKGYWIDAAS   98 (147)
T ss_dssp             ------------HHHHHHHHHHHTTCCSEEEESSS
T ss_pred             ------------HHHHHhHHHHHcCCceEEEeCCc
Confidence                        123456666677765 3554454

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.69  E-value=0.00019  Score=49.69  Aligned_cols=104  Identities=15%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      +.||.|+|+ |.+|..++..|..++. ++.+++++++....         ........+...+  +    .+.+++.|+|
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~----~~~~~~advv   75 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--T----YDDLAGADVV   75 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--C----GGGGTTCSEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--c----ccccCCCcEE
Confidence            358999996 9999999988777763 88888887654211         0011233333322  1    2456789999


Q ss_pred             EEccccCCC---------CcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFGS---------NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~---------~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |.++|....         ....+..|..-...+++..++.+.+-++.+-|
T Consensus        76 vitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          76 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            999995432         23457888888888999998888776555544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=6.9e-06  Score=57.62  Aligned_cols=70  Identities=14%  Similarity=0.115  Sum_probs=46.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc--CCC-CeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS--WAN-NVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~-~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      |||+|+|+ |.+|..++..|.+.|++|.+++|.........  ... ..........+.    .....+|+||.+.-.
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~D~iii~vka   73 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDP----DFLATSDLLLVTLKA   73 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCH----HHHHTCSEEEECSCG
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchh----hhhcccceEEEeecc
Confidence            68999998 99999999999999999999999876532211  011 111111111122    344578999987643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=0.00013  Score=51.04  Aligned_cols=104  Identities=14%  Similarity=0.071  Sum_probs=70.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCcc------c---ccCCCCeeEEEccCCCHHHHHHHhcCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------R---DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      ...+|.|+|+ |.+|..++..|..+|.  ++.+++++++...      .   ............|.       +.++++|
T Consensus        18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-------~~~~~ad   89 (159)
T d2ldxa1          18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-------NVSANSK   89 (159)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-------GGGTTEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-------hhhcccc
Confidence            3458999996 9999999999999975  7999887754311      0   01112222333332       3457899


Q ss_pred             EEEEccccCC----CCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          124 AVISCVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +||.++|...    .....++.|..-...+++...+.+.+-++.+-|
T Consensus        90 ivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             EEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            9999998643    234567888888888888888777665444443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=9.9e-06  Score=57.71  Aligned_cols=75  Identities=21%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHH---Hhc--CCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE---ALD--GVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~~--~~d~vi~~a  129 (200)
                      .+.+|+|+||+|.+|..+++.+...|++|+++++++++........--+++  |..+++..++   +-.  ++|+++.+.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi--~~~~~d~~~~v~~~t~g~g~d~v~d~~  105 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVI--NYREEDLVERLKEITGGKKVRVVYDSV  105 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEE--ECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence            467999999999999999999999999999999987653211111111233  5655543333   332  479999998


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       106 g~  107 (179)
T d1qora2         106 GR  107 (179)
T ss_dssp             CG
T ss_pred             cH
Confidence            75

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=2.4e-05  Score=55.77  Aligned_cols=75  Identities=24%  Similarity=0.232  Sum_probs=51.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHH---HHh--cCCCEEEEcc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EAL--DGVTAVISCV  129 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~--~~~d~vi~~a  129 (200)
                      .+.+|+|+||+|.+|...++.+...|.+|+++++++++. +.....++..+ .|..+++-.+   +..  +++|++|.+.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~-~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~g~d~v~d~~  102 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLNSL  102 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccc-ccccccccccc-ccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence            467999999999999999999999999999998875432 11111222222 2455544333   333  3599999998


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       103 g~  104 (183)
T d1pqwa_         103 AG  104 (183)
T ss_dssp             CT
T ss_pred             cc
Confidence            74

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.63  E-value=0.00013  Score=50.00  Aligned_cols=103  Identities=15%  Similarity=0.067  Sum_probs=70.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhcCCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  125 (200)
                      |||.|+|+ |.+|..++..|+.+|.  ++.+++.+++....         ........+...+  |.    +.+++.|+|
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~--d~----~~~~~adiV   73 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLKGSEII   73 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEES--CG----GGGTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCC--CH----HHhccccEE
Confidence            58899997 9999999999998874  78988877544110         0112223333321  12    367789999


Q ss_pred             EEccccCCCC----cccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       126 i~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |..+|....+    ...+..|..-...+++.+.+.+.+.++.+-|
T Consensus        74 vitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             EEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            9999864432    3456778888888888888887766655555

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=2.7e-05  Score=55.12  Aligned_cols=100  Identities=14%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccC--CCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSW--ANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      ..+|+|+|.|+ |+.+++++..|.+.|.+|+++.|+.++...  ...  ...+..+  ++.+.     ....+|+|||+.
T Consensus        16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~-----~~~~~dliIN~T   87 (170)
T d1nyta1          16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL--SMDEL-----EGHEFDLIINAT   87 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGG-----TTCCCSEEEECC
T ss_pred             CCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc--ccccc-----cccccceeeccc
Confidence            46789999997 999999999999999999999988655221  111  1223332  22221     124689999986


Q ss_pred             ccC--CC-----------CcccchhhHHH-HHHHHHHHHHcCCCEE
Q 029008          130 GGF--GS-----------NSYMYKINGTA-NINAIRAASEKGVKRF  161 (200)
Q Consensus       130 g~~--~~-----------~~~~~~~n~~~-~~~~~~~a~~~~~~~~  161 (200)
                      ...  .+           ....+++.+.. .-.+++.|++.|++.+
T Consensus        88 p~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~  133 (170)
T d1nyta1          88 SSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRN  133 (170)
T ss_dssp             SCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHHHHHHHHTTCCEE
T ss_pred             ccCcccCCCCCcHHHhccCcEEEEeecCCCCCHHHHHHHHcCCCcc
Confidence            421  11           11123443322 1246777888776533

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=3.1e-05  Score=47.50  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=34.5

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ..+.+++|+||+|++|...++.+...|++|+++.+++++
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            356789999999999999999999999999999987654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.52  E-value=3.5e-05  Score=54.08  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=31.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      |+|.|+|. |.+|..+++.|.+.|++|++.+|+++.
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~   35 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQST   35 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            57999987 999999999999999999999987543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=8.6e-05  Score=46.76  Aligned_cols=83  Identities=17%  Similarity=0.060  Sum_probs=56.9

Q ss_pred             CeEEEEccCchhHH-HHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCCCC
Q 029008           57 EKLLVLGGNGFVGS-HICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSN  135 (200)
Q Consensus        57 ~~ilVtGa~G~iG~-~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~  135 (200)
                      ++|.++|- |++|. .|++.|.++|++|.+.++......+.+...++.+..+  .+++.    ++++|.||...+...+.
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~g--h~~~~----i~~~d~vV~SsAI~~~n   74 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVP--HSADN----WYDPDLVIKTPAVRDDN   74 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESS--CCTTS----CCCCSEEEECTTCCTTC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEee--ecccc----cCCCCEEEEecCcCCCC
Confidence            67888886 66776 6899999999999999988655434444456666544  23333    35799999988864332


Q ss_pred             cccchhhHHHHHHHHHHHHHcCC
Q 029008          136 SYMYKINGTANINAIRAASEKGV  158 (200)
Q Consensus       136 ~~~~~~n~~~~~~~~~~a~~~~~  158 (200)
                      .            -+++|++.|+
T Consensus        75 p------------el~~A~~~gI   85 (89)
T d1j6ua1          75 P------------EIVRARMERV   85 (89)
T ss_dssp             H------------HHHHHHHTTC
T ss_pred             H------------HHHHHHHcCC
Confidence            1            1556677765

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=0.0002  Score=49.70  Aligned_cols=106  Identities=14%  Similarity=0.102  Sum_probs=65.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC----c-E--EEeecCCCCcc--------cccCCCCeeEEEccCCCHHHHHHHhc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL----T-V--ASLSRSGRSSL--------RDSWANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~----~-V--~~~~r~~~~~~--------~~~~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      .++|.|+||+|.+|+.++..|+..+.    . +  .++.-......        ..........+...    ....+.++
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   79 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEAT----DDPKVAFK   79 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE----SCHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccC----Cchhhhcc
Confidence            45999999999999999999998753    1 1  11111111100        01111222222222    22357889


Q ss_pred             CCCEEEEccccCCCC----cccchhhHHHHHHHHHHHHHcCC-C-EEEEEe
Q 029008          121 GVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEKGV-K-RFVYIS  165 (200)
Q Consensus       121 ~~d~vi~~ag~~~~~----~~~~~~n~~~~~~~~~~a~~~~~-~-~~v~vS  165 (200)
                      +.|+||.++|....+    ...+..|+.-...+.+...+... . .++.+|
T Consensus        80 ~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            999999999975432    34677788888888888887543 3 344444

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.49  E-value=5.3e-05  Score=51.00  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=54.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHH-hcCCCEEEEcc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCV  129 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~a  129 (200)
                      |+++|+|. |-+|..+++.|  +|++|.+++.+++.. +.....++.++.+|.++++.++++ +++++.+|-+.
T Consensus         1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~-~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVR-KKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHH-HHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHH-HHHHhcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence            57899997 89999999998  467888888776542 222245789999999999999875 56789988764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.49  E-value=5.1e-05  Score=55.17  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      |+|.|+|. |++|..++..|++.|++|++.+.+.
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            57999986 9999999999999999999999764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=8.7e-05  Score=52.17  Aligned_cols=76  Identities=20%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..+.+|+|.|+ |.+|...++.+...|+++++++++.++..... .-+... ..|..+.+......+++|++|.+.|..
T Consensus        29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~-~lGad~-~i~~~~~~~~~~~~~~~D~vid~~g~~  104 (168)
T d1uufa2          29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADE-VVNSRNADEMAAHLKSFDFILNTVAAP  104 (168)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSE-EEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred             CCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHh-ccCCcE-EEECchhhHHHHhcCCCceeeeeeecc
Confidence            35679999996 89999999999999999999888765521111 112221 136677776667777899999998753

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.41  E-value=0.00026  Score=49.11  Aligned_cols=106  Identities=11%  Similarity=0.005  Sum_probs=65.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-------cEEEeecCCCCcc-c-------ccCCCCeeEEEccCCCHHHHHHHhc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSL-R-------DSWANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~-~-------~~~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      .++|.|+||+|.+|.+++..|+..+-       +++..+.+..... +       .........+..    ..+..+.++
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~   78 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIA----TDKEEIAFK   78 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEE----ESCHHHHTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccccccccc----CcccccccC
Confidence            46999999999999999999987542       2344443322110 0       111112221111    112357888


Q ss_pred             CCCEEEEccccCC----CCcccchhhHHHHHHHHHHHHHc-CCC-EEEEEe
Q 029008          121 GVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEK-GVK-RFVYIS  165 (200)
Q Consensus       121 ~~d~vi~~ag~~~----~~~~~~~~n~~~~~~~~~~a~~~-~~~-~~v~vS  165 (200)
                      ++|+||-++|...    .....++.|..-...+.+...+. +.. .+|.+|
T Consensus        79 ~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          79 DLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             TCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence            9999999999643    23456788888888888888665 433 334444

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.40  E-value=0.00044  Score=49.27  Aligned_cols=65  Identities=25%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ..++++.|.|. |.||+.+++.+...|.+|++.+|.......              .-.++++++++.+|+|+.+.....
T Consensus        40 l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~~~--------------~~~~~l~ell~~sDiv~~~~pl~~  104 (181)
T d1qp8a1          40 IQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEGPW--------------RFTNSLEEALREARAAVCALPLNK  104 (181)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCSSS--------------CCBSCSHHHHTTCSEEEECCCCST
T ss_pred             ccCceEEEecc-ccccccceeeeeccccccccccccccccce--------------eeeechhhhhhccchhhccccccc
Confidence            57899999997 999999999999999999999887543211              111246789999999998776543

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.37  E-value=8e-05  Score=53.09  Aligned_cols=32  Identities=19%  Similarity=0.453  Sum_probs=26.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-CcEEEee
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLS   87 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~   87 (200)
                      |++|.|.||||++|+.+++.|.++. .++..+.
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~   33 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT   33 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence            6799999999999999999999874 4665443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.32  E-value=0.00032  Score=49.86  Aligned_cols=73  Identities=16%  Similarity=0.217  Sum_probs=49.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc------cccCC-CCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWA-NNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      |+|.|.|+ |..|.+++..|.++|++|.+..|..+...      ..... -.......++.-.++++++++++|+||.+.
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            68999998 99999999999999999999988533210      00000 011111112233566788899999999876


Q ss_pred             c
Q 029008          130 G  130 (200)
Q Consensus       130 g  130 (200)
                      .
T Consensus        80 p   80 (180)
T d1txga2          80 S   80 (180)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.31  E-value=2.6e-05  Score=55.19  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=34.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      .+.+|||+||+|++|...++.....|++|+++++++++
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            34579999999999999999999999999999998765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.00011  Score=51.56  Aligned_cols=75  Identities=20%  Similarity=0.214  Sum_probs=51.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCe-eEEEccCC-CHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNV-IWHQGNLL-SSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~Dl~-d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+.+++|+|+ |.+|...++.+...|++|+++++++++...... -+. .++  |.. +.+..+...+++|.++.+.+.
T Consensus        26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~-lGa~~~i--~~~~~~~~~~~~~~~~d~vi~~~~~  101 (168)
T d1piwa2          26 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MGADHYI--ATLEEGDWGEKYFDTFDLIVVCASS  101 (168)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCSEEE--EGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             CCCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhc-cCCcEEe--eccchHHHHHhhhcccceEEEEecC
Confidence            35679999997 999999999888899999999998765322111 112 222  222 334445566679999999775


Q ss_pred             C
Q 029008          132 F  132 (200)
Q Consensus       132 ~  132 (200)
                      .
T Consensus       102 ~  102 (168)
T d1piwa2         102 L  102 (168)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00036  Score=48.98  Aligned_cols=76  Identities=20%  Similarity=0.150  Sum_probs=50.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-----CCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d~vi~~  128 (200)
                      .+.+|+|+|+ |.+|...+..+...|+ +|+++++++.+........--.++..+-.+.....+.++     ++|++|.+
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            4568999987 9999999999999998 799988876552211111111233333344544444432     68999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      .|.
T Consensus       105 ~G~  107 (171)
T d1pl8a2         105 TGA  107 (171)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            885

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.00023  Score=50.57  Aligned_cols=73  Identities=10%  Similarity=0.175  Sum_probs=42.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCC--cccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~--~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      |++|.|.||||++|+.+++.|.+..+ ++..+..+...  ......+....-......+.+   .+.+++|++|.+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~---~~~~~~dvvf~a~p~   76 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE---KVSKNCDVLFTALPA   76 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHH---HHHHHCSEEEECCST
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHh---HhccccceEEEcccc
Confidence            57999999999999999999988654 66555433221  111111111111111222333   345579999987654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=4.8e-05  Score=54.61  Aligned_cols=76  Identities=20%  Similarity=0.137  Sum_probs=46.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEe-ecCCCCccccc-CCCCeeEEEccCCCHHH---HHHHh-cCCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLRDS-WANNVIWHQGNLLSSDS---WKEAL-DGVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~-~~~~~~~~~~Dl~d~~~---~~~~~-~~~d~vi~  127 (200)
                      ....+|+|+||+|.+|...++.+...|.++++. +.+.++..... ....-.++  |..+++.   ++++. +++|++|.
T Consensus        29 G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi--~~~~~~~~~~~~~~~~~GvDvv~D  106 (187)
T d1vj1a2          29 GSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAV--NYKTGNVAEQLREACPGGVDVYFD  106 (187)
T ss_dssp             TSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEE--ETTSSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEe--eccchhHHHHHHHHhccCceEEEe
Confidence            345789999999999999999999999875554 44433221111 11112222  4544332   23322 26999999


Q ss_pred             cccc
Q 029008          128 CVGG  131 (200)
Q Consensus       128 ~ag~  131 (200)
                      +.|.
T Consensus       107 ~vGg  110 (187)
T d1vj1a2         107 NVGG  110 (187)
T ss_dssp             SSCH
T ss_pred             cCCc
Confidence            9874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.22  E-value=0.00037  Score=48.75  Aligned_cols=75  Identities=24%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc-cCCCCeeEEEccC--CCHHHHHHHh-----cCCCEEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNL--LSSDSWKEAL-----DGVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~Dl--~d~~~~~~~~-----~~~d~vi  126 (200)
                      .+.+++|+| +|.+|...++.+...|++|+++++++++.... ....... +..|-  .+.+.+.+.+     .++|++|
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~-~~~~~~~~~~~~~~~~~~~~~g~g~D~vi  103 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVT-LVVDPAKEEESSIIERIRSAIGDLPNVTI  103 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEE-EECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEE-EeccccccccchhhhhhhcccccCCceee
Confidence            456899998 59999999999999999999999886653211 1111222 22222  2333333333     2589999


Q ss_pred             Ecccc
Q 029008          127 SCVGG  131 (200)
Q Consensus       127 ~~ag~  131 (200)
                      .++|.
T Consensus       104 d~~g~  108 (170)
T d1e3ja2         104 DCSGN  108 (170)
T ss_dssp             ECSCC
T ss_pred             ecCCC
Confidence            99885

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=0.00029  Score=49.99  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCC--HHHH-H---HHhc--CCCEE
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSW-K---EALD--GVTAV  125 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d--~~~~-~---~~~~--~~d~v  125 (200)
                      .+.+|+|+|+ |.+|...++.+...|+ +|+++++++++........--.++  |..+  ..+. +   +...  ++|+|
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~~~~i~~~~~~~g~Dvv  104 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTL--NRRETSVEERRKAIMDITHGRGADFI  104 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCCEEEEECC-CccchhheecccccccccccccccccccccccccccceEEE--eccccchHHHHHHHHHhhCCCCceEE
Confidence            4679999997 9999999999999998 799998876542111111111233  3332  2222 2   2222  58999


Q ss_pred             EEcccc
Q 029008          126 ISCVGG  131 (200)
Q Consensus       126 i~~ag~  131 (200)
                      |.+.|.
T Consensus       105 id~vG~  110 (182)
T d1vj0a2         105 LEATGD  110 (182)
T ss_dssp             EECSSC
T ss_pred             eecCCc
Confidence            999876

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.14  E-value=6.4e-05  Score=53.89  Aligned_cols=33  Identities=21%  Similarity=0.468  Sum_probs=27.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEee
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLS   87 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~   87 (200)
                      ++.||.|.||||++|+.+++.|.+..+ ++..+.
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            456899999999999999999998754 655554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00078  Score=48.15  Aligned_cols=73  Identities=22%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ..++++.|.|. |.||+.+++.+..-|.+|...++.......     ..  ..     .++++++++..|+|+.+.....
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----~~--~~-----~~~l~ell~~sDii~i~~plt~  108 (188)
T d1sc6a1          42 ARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPLG-----NA--TQ-----VQHLSDLLNMSDVVSLHVPENP  108 (188)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCCT-----TC--EE-----CSCHHHHHHHCSEEEECCCSST
T ss_pred             ccceEEEEeec-ccchhhhhhhcccccceEeeccccccchhh-----hh--hh-----hhhHHHHHhhccceeecccCCc
Confidence            56789999996 999999999999999999999876443211     11  11     1357788889999988876544


Q ss_pred             CCcccc
Q 029008          134 SNSYMY  139 (200)
Q Consensus       134 ~~~~~~  139 (200)
                      ....++
T Consensus       109 ~T~~li  114 (188)
T d1sc6a1         109 STKNMM  114 (188)
T ss_dssp             TTTTCB
T ss_pred             chhhhc
Confidence            333333

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.07  E-value=0.00038  Score=50.32  Aligned_cols=67  Identities=15%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ..++++.|.|- |.||+.+++.|..-|.+|++.++........           +....++++++++.+|+|+.+....
T Consensus        41 l~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~-----------~~~~~~~l~~~l~~sDii~~~~plt  107 (197)
T d1j4aa1          41 VRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELEK-----------KGYYVDSLDDLYKQADVISLHVPDV  107 (197)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHHH-----------TTCBCSCHHHHHHHCSEEEECSCCC
T ss_pred             ccCCeEEEecc-cccchhHHHhHhhhcccccccCccccccccc-----------ceeeeccccccccccccccccCCcc
Confidence            46889999996 9999999999999999999987664332111           1112345778888899888876543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.06  E-value=0.00038  Score=47.96  Aligned_cols=66  Identities=20%  Similarity=0.166  Sum_probs=45.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      |||.|+|. |.+|+.+++.|+++|++|++.++.......... .++.+.       ++..++++.+|+||.+...
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~-~~~~~~-------~~~~e~~~~~diIi~~v~~   66 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPSTIERA-RTVGVT-------ETSEEDVYSCPVVISAVTP   66 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHH-HHHTCE-------ECCHHHHHTSSEEEECSCG
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhh-hccccc-------ccHHHHHhhcCeEEEEecC
Confidence            57999986 999999999999999999988876554221110 111111       1234567789999988653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.05  E-value=0.00021  Score=49.89  Aligned_cols=36  Identities=14%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      |++|.++|- |.+|..+++.|++.||+|.+.+|+.++
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~   36 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSA   36 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhh
Confidence            578999986 999999999999999999999887544

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.03  E-value=7.8e-05  Score=53.68  Aligned_cols=68  Identities=15%  Similarity=0.212  Sum_probs=48.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc-------------cccCCCCeeEEEccCCCHHHHHHHhcC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-------------RDSWANNVIWHQGNLLSSDSWKEALDG  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------------~~~~~~~~~~~~~Dl~d~~~~~~~~~~  121 (200)
                      .|++|.|.|+ |..|.+++..|.+.|++|.+.+|+++...             ....+.++.+       ..++++++++
T Consensus         6 ~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-------t~~l~~a~~~   77 (189)
T d1n1ea2           6 YLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-------TSDVEKAYNG   77 (189)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-------ESCHHHHHTT
T ss_pred             eeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccccccccc-------chhhhhccCC
Confidence            4578999998 99999999999999999999998753210             0111223332       2346788889


Q ss_pred             CCEEEEccc
Q 029008          122 VTAVISCVG  130 (200)
Q Consensus       122 ~d~vi~~ag  130 (200)
                      .|+||.+..
T Consensus        78 ad~iiiavP   86 (189)
T d1n1ea2          78 AEIILFVIP   86 (189)
T ss_dssp             CSCEEECSC
T ss_pred             CCEEEEcCc
Confidence            999988754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.00  E-value=0.00059  Score=44.78  Aligned_cols=36  Identities=28%  Similarity=0.558  Sum_probs=32.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .+++++|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            3479999998 99999999999999999999998754

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.99  E-value=0.00043  Score=47.92  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=21.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL   81 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~   81 (200)
                      +|.|.||||++|..+++.|.+..+
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~f   26 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTL   26 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCS
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCC
Confidence            799999999999999999888754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.95  E-value=0.00071  Score=44.80  Aligned_cols=37  Identities=30%  Similarity=0.606  Sum_probs=33.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ..++++|.|| |++|..++..|.++|.+|+++.+.+.-
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccceEEEEeecccc
Confidence            3579999998 999999999999999999999987543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.95  E-value=0.00081  Score=44.60  Aligned_cols=36  Identities=19%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      ..++++|.|| |++|..++..|.+.|.+|+++.+.+.
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence            4679999997 99999999999999999999988753

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00052  Score=47.96  Aligned_cols=32  Identities=19%  Similarity=0.433  Sum_probs=26.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHC-CCcEEEe
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASL   86 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~   86 (200)
                      ...+|.|.|++|.+|+.+++.+.+. +.++.+.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~   35 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAA   35 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence            3468999999999999999999886 5565443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.92  E-value=0.0002  Score=49.95  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      |+|.|+|- |.+|..+++.|++.|++|++.+|++++
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~   35 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEA   35 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcch
Confidence            57999996 999999999999999999999988654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.90  E-value=0.00035  Score=49.38  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=46.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc--cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--SWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a  129 (200)
                      +.+|.|+|- |.+|..+++.|++.|++|++.+|++++..+.  .........  -....+++.+.+...|.++-+.
T Consensus         2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVL--GAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCE--ECSSHHHHHHHBCSSCEEEECS
T ss_pred             CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccccccc--chhhhhhhhhhhcccceEEEec
Confidence            468999997 9999999999999999999999987542211  000000000  0224455556666666666654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.89  E-value=0.00091  Score=48.06  Aligned_cols=71  Identities=18%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ....++++.|.|. |.||+.+++.|...|.+|.+.++.........  .       ++...++++++++.+|+|+.+...
T Consensus        45 ~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~--~-------~~~~~~~l~~ll~~sD~i~~~~pl  114 (193)
T d1mx3a1          45 ARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDGVERA--L-------GLQRVSTLQDLLFHSDCVTLHCGL  114 (193)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH--H-------TCEECSSHHHHHHHCSEEEECCCC
T ss_pred             eeeeCceEEEecc-ccccccceeeeeccccceeeccCcccccchhh--h-------ccccccchhhccccCCEEEEeecc
Confidence            3357899999997 99999999999999999999887654421110  0       111223567788889988877654


Q ss_pred             C
Q 029008          132 F  132 (200)
Q Consensus       132 ~  132 (200)
                      .
T Consensus       115 t  115 (193)
T d1mx3a1         115 N  115 (193)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.88  E-value=0.00037  Score=48.75  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~~   91 (200)
                      ||+|+|+|. |.+|..+++.|.+.|+  +|++.+++.+
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            578999996 9999999999999996  6777777653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.85  E-value=0.0001  Score=51.07  Aligned_cols=66  Identities=18%  Similarity=0.090  Sum_probs=45.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      |+|.++|+ |-+|.++++.|.+.|++|++..|+.++..+.....++.+.       .+.+++++.+|+||-+.-
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~-------~~~~~~~~~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYA-------MSHQDLIDQVDLVILGIK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBC-------SSHHHHHHTCSEEEECSC
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeee-------chhhhhhhccceeeeecc
Confidence            57999996 9999999999999999999998875542211101112111       134566778898888764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.85  E-value=0.0011  Score=47.77  Aligned_cols=67  Identities=13%  Similarity=0.078  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|.|. |.||+.+++.|..-|.+|++.++.......    ..+.        ..+++++++.+|+|+.+....
T Consensus        42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~----~~~~--------~~~l~~l~~~~D~v~~~~plt  108 (199)
T d1dxya1          42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGDH----PDFD--------YVSLEDLFKQSDVIDLHVPGI  108 (199)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSCC----TTCE--------ECCHHHHHHHCSEEEECCCCC
T ss_pred             cccceeeeeeec-ccccccccccccccceeeeccCCccchhhh----cchh--------HHHHHHHHHhcccceeeeccc
Confidence            346789999997 999999999999999999999886544211    1111        224677888899888876543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.83  E-value=0.00083  Score=44.20  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .++++|.|| |++|..++..|.+.|.+|+++.|...
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence            479999998 99999999999999999999998753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.83  E-value=0.00025  Score=50.18  Aligned_cols=75  Identities=21%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCH---HHHHHHhc--CCCEEEEc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEALD--GVTAVISC  128 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~--~~d~vi~~  128 (200)
                      .+.+|+|.|+ |.+|...++.+...|+ +|+++++++++........-.+++  |..+.   +.+.+...  ++|++|.+
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i--~~~~~~~~~~v~~~t~g~G~D~vid~  103 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDIL--NYKNGHIEDQVMKLTNGKGVDRVIMA  103 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEE--CGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccc--cccchhHHHHHHHHhhccCcceEEEc
Confidence            4668999987 9999999999999997 788888876542111111112233  33332   33444443  48999999


Q ss_pred             cccC
Q 029008          129 VGGF  132 (200)
Q Consensus       129 ag~~  132 (200)
                      +|..
T Consensus       104 ~g~~  107 (174)
T d1jqba2         104 GGGS  107 (174)
T ss_dssp             SSCT
T ss_pred             cCCH
Confidence            9863

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00092  Score=44.28  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      .++++|+|| |++|..++..|.+.|.+|+++.+.+.-
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecccc
Confidence            479999998 999999999999999999999987543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.00028  Score=49.55  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS   92 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~   92 (200)
                      ..++|+|.|+ |+.+++++..|.+.|. +|.++.|+.++
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence            4679999998 9999999999999996 78888888654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0014  Score=46.48  Aligned_cols=40  Identities=25%  Similarity=0.386  Sum_probs=35.1

Q ss_pred             CCCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           51 VPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        51 ~~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .+....|+|+|+|| |..|...+..|.++||+|+++.+.+.
T Consensus        38 ~~~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          38 LPAVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSCSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence            34456789999998 99999999999999999999998753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.001  Score=43.64  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      +++++|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence            478999998 99999999999999999999988753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.77  E-value=0.0011  Score=43.25  Aligned_cols=36  Identities=25%  Similarity=0.470  Sum_probs=32.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .+++++|.|| |++|..++..|.+.|.+|+++.+.+.
T Consensus        20 ~p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          20 LPQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence            3479999998 99999999999999999999988753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.0026  Score=42.45  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=27.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASL   86 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~   86 (200)
                      ++|.|.|++|.+|+.|.+.+.+.|+++.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~   30 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK   30 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence            579999999999999999999999987754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.74  E-value=0.00048  Score=48.51  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEE-eecCCCCcccccCCCCeeEEEccCCCHHHHH---HHhc-CCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVAS-LSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EALD-GVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~~-~~d~vi~~  128 (200)
                      ..+.+|+|.|+ |.+|...++.+...|+++++ .++++.+........-.+++  |..+++..+   ++.. ++|++|.|
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i--~~~~~~~~~~i~~~t~gg~D~vid~  103 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI--NSKTQDPVAAIKEITDGGVNFALES  103 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred             CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEE--eCCCcCHHHHHHHHcCCCCcEEEEc
Confidence            45678999997 99999999999888986654 45544331111111122343  444433333   3332 58999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      .|.
T Consensus       104 ~G~  106 (174)
T d1f8fa2         104 TGS  106 (174)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            885

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.72  E-value=0.0013  Score=43.24  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .+++++|+|| |++|..++..|.+.|.+|+++.+...
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence            4479999998 99999999999999999999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.0011  Score=46.69  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc----cCCCCeeEEEccCCCHHHHHHHhcCCCEEEEc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~  128 (200)
                      ...+++|+|.|+ |+.+++++..|.+.+.+|+++.|+.++....    ....++..+..|-.       .+..+|++||+
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~-------~~~~~diiIN~   86 (171)
T d1p77a1          15 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSI-------PLQTYDLVINA   86 (171)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC-------CCSCCSEEEEC
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccc-------cccccceeeec
Confidence            356789999997 8999999999999888999999986542210    11123444444321       24578999999


Q ss_pred             cccCC--C-----------CcccchhhHHH--HHHHHHHHHHcCCCEE
Q 029008          129 VGGFG--S-----------NSYMYKINGTA--NINAIRAASEKGVKRF  161 (200)
Q Consensus       129 ag~~~--~-----------~~~~~~~n~~~--~~~~~~~a~~~~~~~~  161 (200)
                      ....-  .           ....+++++..  ...+++.|++.|++.+
T Consensus        87 tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g~~~v  134 (171)
T d1p77a1          87 TSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNV  134 (171)
T ss_dssp             CCC-------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCE
T ss_pred             ccccccccccchhhhhhcccceeeeeeccCcccHHHHHHHHHcCCCcc
Confidence            75321  0           11234444422  1245677777776443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0006  Score=48.31  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=33.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      +.+++|+||+|++|...++.+...|++|+++++++++
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence            4589999999999999999999999999999998665

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0013  Score=43.72  Aligned_cols=35  Identities=11%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .++++|+|| |++|..++..|.+.|.+|+++.|...
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence            479999998 99999999999999999999999753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.69  E-value=0.0012  Score=43.57  Aligned_cols=34  Identities=26%  Similarity=0.620  Sum_probs=31.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      .++++|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            468999998 9999999999999999999998764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.69  E-value=0.0014  Score=47.98  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=32.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ..++|+|+|| |..|...+..|.++|++|+++.|..
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4568999998 9999999999999999999999864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.69  E-value=0.0011  Score=46.18  Aligned_cols=75  Identities=23%  Similarity=0.223  Sum_probs=49.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCe-eEEEccCCCHHHHHHHh-----cCCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNV-IWHQGNLLSSDSWKEAL-----DGVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~-----~~~d~vi  126 (200)
                      ..+.+|+|+|++|.+|...+..+...|. +|+++++++++..... .-+. .++  |..+.+..++..     .++|++|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~Ga~~~i--~~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVI--NASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEE--ETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-HcCCceee--ccCCcCHHHHHHHHhhcccchhhh
Confidence            3567999999999999999999998885 8888887754421111 1122 233  334433333333     2489999


Q ss_pred             Ecccc
Q 029008          127 SCVGG  131 (200)
Q Consensus       127 ~~ag~  131 (200)
                      .++|.
T Consensus       103 d~~g~  107 (170)
T d1jvba2         103 DLNNS  107 (170)
T ss_dssp             ESCCC
T ss_pred             ccccc
Confidence            99885

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.68  E-value=0.0015  Score=43.26  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      .+++++|+|| |++|..++..|.+.|.+|+++.|+
T Consensus        19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            3468999998 999999999999999999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.67  E-value=0.0052  Score=42.86  Aligned_cols=78  Identities=12%  Similarity=0.083  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEE-EccCCC-HHHHHHHh--cCCCEEEE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWH-QGNLLS-SDSWKEAL--DGVTAVIS  127 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~Dl~d-~~~~~~~~--~~~d~vi~  127 (200)
                      ...+.+|+|.|+ |++|...+..+...|. +|+++++++++............+ ..|-.+ .+...+..  .++|++|.
T Consensus        26 vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid  104 (176)
T d2jhfa2          26 VTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE  104 (176)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEe
Confidence            345679999999 7799999999999985 788888876653221111112222 122211 12222222  36999999


Q ss_pred             cccc
Q 029008          128 CVGG  131 (200)
Q Consensus       128 ~ag~  131 (200)
                      +.|.
T Consensus       105 ~~G~  108 (176)
T d2jhfa2         105 VIGR  108 (176)
T ss_dssp             CSCC
T ss_pred             cCCc
Confidence            9886

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.67  E-value=0.0041  Score=43.63  Aligned_cols=77  Identities=18%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCC--HHHHHHHh--cCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEAL--DGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~--~~~d~vi~~  128 (200)
                      ..+.+|+|+|+ |.+|...+..+...|+ +|++.++++++........-..++...-.|  .+.+.+..  .++|++|.|
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            45679999986 9999999999999998 577777766552211111122233221112  22223222  369999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      .|.
T Consensus       106 ~G~  108 (174)
T d1e3ia2         106 AGT  108 (174)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            986

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0011  Score=40.38  Aligned_cols=51  Identities=14%  Similarity=0.165  Sum_probs=38.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLL  110 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~  110 (200)
                      +|+|.|.|+ |-+|+-++....+.|++|++++-+.+.+..   .....++..+..
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~---~~a~dvIT~e~E   51 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAEPAAV---PFQQSVITAEIE   51 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSCGGGS---CGGGSEEEESSS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCCCccc---ccccceEEEeec
Confidence            579999997 999999999999999999999876554322   123345555554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.62  E-value=0.0014  Score=45.88  Aligned_cols=73  Identities=21%  Similarity=0.224  Sum_probs=56.4

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc--ccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      .-+++|.|+ |-.|..-++.+...|.+|.+++.+.++..+  ......++..   ..+.+.+++.++++|+||.++-..
T Consensus        32 pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~---~~~~~~l~~~~~~aDivI~aalip  106 (168)
T d1pjca1          32 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELL---YSNSAEIETAVAEADLLIGAVLVP  106 (168)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEE---ECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceee---hhhhhhHHHhhccCcEEEEeeecC
Confidence            459999998 999999999999999999999988654221  1112334443   456888999999999999998643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.61  E-value=0.0023  Score=44.30  Aligned_cols=74  Identities=18%  Similarity=0.156  Sum_probs=46.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHH---HHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+|+|.|+ |.+|...++.+...|++|+++++++++........-..++  |..+.+   .+.+...+.+.+|-+.+.
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i--~~~~~~~~~~~~~~~~g~~~~i~~~~~  103 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTV--NARQEDPVEAIQRDIGGAHGVLVTAVS  103 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHHHHHHHSSEEEEEECCSC
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccc--cccchhHHHHHHHhhcCCccccccccc
Confidence            4678999986 9999999999999999999999886552211111112233  444433   333444456666666553

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.57  E-value=0.0018  Score=43.43  Aligned_cols=36  Identities=28%  Similarity=0.673  Sum_probs=32.7

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      ..++++|+|| |++|..++..|.+.|.+|+++.+.+.
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence            4579999998 99999999999999999999998754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.55  E-value=0.0018  Score=47.74  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=33.1

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      +..+||+|+|| |..|..++..|.++|++|+++.|++.
T Consensus         2 ~~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           2 PTTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            35679999998 99999999999999999999998654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.53  E-value=0.00067  Score=46.63  Aligned_cols=35  Identities=17%  Similarity=0.378  Sum_probs=30.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRS   92 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~   92 (200)
                      |+|.++|+ |-+|.++++.|++.| ++|++.+|++++
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~   36 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEK   36 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHH
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhH
Confidence            57999997 999999999999887 899999988654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.0021  Score=45.63  Aligned_cols=70  Identities=11%  Similarity=0.012  Sum_probs=50.4

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|.|. |.||+.+++.+..-|.+|++.++...+.....  ..++        ..+++++++.+|+|+.+....
T Consensus        41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~--~~~~--------~~~l~ell~~sDiv~~~~Plt  109 (184)
T d1ygya1          41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ--LGIE--------LLSLDDLLARADFISVHLPKT  109 (184)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH--HTCE--------ECCHHHHHHHCSEEEECCCCS
T ss_pred             cccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHhh--cCce--------eccHHHHHhhCCEEEEcCCCC
Confidence            356789999996 99999999999999999999887654321110  1111        234678888999888877654


Q ss_pred             C
Q 029008          133 G  133 (200)
Q Consensus       133 ~  133 (200)
                      .
T Consensus       110 ~  110 (184)
T d1ygya1         110 P  110 (184)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.49  E-value=0.0013  Score=43.57  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      .+++++|+|| |++|..++..|.+.|.+|+++.|.+.-
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            3479999998 999999999999999999999987544

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.47  E-value=0.0036  Score=41.80  Aligned_cols=87  Identities=18%  Similarity=0.200  Sum_probs=58.6

Q ss_pred             CCCeEEEEccC---chhHHHHHHHHHHCC-CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           55 PSEKLLVLGGN---GFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      ..++|.|+|++   +..|..+.+.|.+.| ++|+.+..+.+.      -.+..++. ++.      ++-..+|.++-+..
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~------i~G~~~y~-sl~------dlp~~vDlvvi~vp   73 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE------VQGVKAYK-SVK------DIPDEIDLAIIVVP   73 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE------ETTEECBS-STT------SCSSCCSEEEECSC
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc------cCCeEeec-chh------hcCCCCceEEEecC
Confidence            56799999998   999999999988766 588877543221      01222221 232      22336898887654


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      .            ..+..+++.|.+.|++.++.+|+
T Consensus        74 ~------------~~~~~~~~~~~~~g~~~~vi~s~   97 (129)
T d2csua1          74 K------------RFVKDTLIQCGEKGVKGVVIITA   97 (129)
T ss_dssp             H------------HHHHHHHHHHHHHTCCEEEECCC
T ss_pred             h------------HHhHHHHHHHHHcCCCEEEEecc
Confidence            3            23456788888889998888887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.002  Score=46.14  Aligned_cols=36  Identities=28%  Similarity=0.484  Sum_probs=32.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      +-++|.|.|+ |.+|..++..++..|++|++.+++++
T Consensus         3 ~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           3 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence            3479999998 99999999999999999999998864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0044  Score=43.14  Aligned_cols=57  Identities=21%  Similarity=0.302  Sum_probs=44.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+|+|+|.|.+.-+|+.++..|.++|+.|+.+.....                      ++.+..++.|++|.++|.
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~----------------------~l~~~~~~ADivI~a~G~   90 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK----------------------NLRHHVENADLLIVAVGK   90 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS----------------------CHHHHHHHCSEEEECSCC
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhccccccccccc----------------------hhHHHHhhhhHhhhhccC
Confidence            457899999999999999999999999999987754321                      134555677888887774

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0012  Score=45.98  Aligned_cols=69  Identities=16%  Similarity=0.088  Sum_probs=48.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ...+|+++|+|- |.+|+.+++.|...|.+|.+...++.+..+.. -...++.        .+++++...|++|-+.|.
T Consensus        21 ~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-~dG~~v~--------~~~~a~~~adivvtaTGn   89 (163)
T d1li4a1          21 MIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPINALQAA-MEGYEVT--------TMDEACQEGNIFVTTTGC   89 (163)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC--------CHHHHTTTCSEEEECSSC
T ss_pred             eecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccchhHHhh-cCceEee--------ehhhhhhhccEEEecCCC
Confidence            357899999995 99999999999999999999988764432211 1122221        245566666777776663

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0077  Score=42.04  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=44.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      +..+|+|+|+|.+.-+|+.++..|+++|+.|+.+......                      +.+..++.|++|..+|.
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~----------------------l~~~~~~aDivi~a~G~   92 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH----------------------LDEEVNKGDILVVATGQ   92 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS----------------------HHHHHTTCSEEEECCCC
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEeccccc----------------------HHHHHhhccchhhcccc
Confidence            4689999999999999999999999999999987654322                      23445567777776664

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.41  E-value=0.002  Score=44.98  Aligned_cols=75  Identities=21%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCC-CHHHHHHHh-----cCCCEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLL-SSDSWKEAL-----DGVTAVI  126 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~-----~~~d~vi  126 (200)
                      ..+.+|+|.|+ |++|...++.+...|. .|+++++++++........--.++  |.. +.+.+.+.+     .++|++|
T Consensus        27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i--~~~~~~~~~~~~~~~~~~~g~D~vi  103 (176)
T d2fzwa2          27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI--NPQDFSKPIQEVLIEMTDGGVDYSF  103 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE--CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEE--eCCchhhHHHHHHHHHcCCCCcEee
Confidence            35679999998 6899999999999997 455555554442111111112222  221 112222222     3699999


Q ss_pred             Ecccc
Q 029008          127 SCVGG  131 (200)
Q Consensus       127 ~~ag~  131 (200)
                      .+.|.
T Consensus       104 d~~G~  108 (176)
T d2fzwa2         104 ECIGN  108 (176)
T ss_dssp             ECSCC
T ss_pred             ecCCC
Confidence            99885

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.028  Score=36.66  Aligned_cols=91  Identities=20%  Similarity=0.224  Sum_probs=61.7

Q ss_pred             CCCeEEEEccCc----------hhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CC
Q 029008           55 PSEKLLVLGGNG----------FVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GV  122 (200)
Q Consensus        55 ~~~~ilVtGa~G----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~  122 (200)
                      ..++|+|.|+..          +.+.+.++.|.+.|++++.+..+++.-...  ..-..-+..+-...+.+.++++  ++
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd--~d~aD~lYfeplt~e~v~~Ii~~E~p   80 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD--YDTSDRLYFEPVTLEDVLEIVRIEKP   80 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS--TTSSSEEECCCCSHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC--hhhcCceEEccCCHHHHHHHHHHhCC
Confidence            457999999832          778899999999999999998887663221  1222333445556777877664  68


Q ss_pred             CEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCC
Q 029008          123 TAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVK  159 (200)
Q Consensus       123 d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~  159 (200)
                      |.|+-..|.            +..+++...+.+.|++
T Consensus        81 ~~ii~~~GG------------Qtalnla~~L~~~gv~  105 (121)
T d1a9xa4          81 KGVIVQYGG------------QTPLKLARALEAAGVP  105 (121)
T ss_dssp             SEEECSSST------------HHHHTTHHHHHHTTCC
T ss_pred             CEEEeehhh------------hhHHHHHHHHHHcCCc
Confidence            888877664            2234555556666763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.34  E-value=0.0061  Score=42.61  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCC--HHHHHHHh--cCCCEEEE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEAL--DGVTAVIS  127 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~--~~~d~vi~  127 (200)
                      ...+.+|+|.|+ |.+|...++.+...|+ +|+++++++++........-..++...-.|  .+.+....  .++|++|-
T Consensus        25 ~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid  103 (174)
T d1p0fa2          25 VTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE  103 (174)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEE
Confidence            345679999996 9999999999999996 688888876653221111222233211112  12222323  26899999


Q ss_pred             cccc
Q 029008          128 CVGG  131 (200)
Q Consensus       128 ~ag~  131 (200)
                      +.|.
T Consensus       104 ~~g~  107 (174)
T d1p0fa2         104 CAGR  107 (174)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            9886

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.0019  Score=44.09  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      ..++|+++|+|| |.+|..-++.|++.|.+|++++..
T Consensus        10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999998 999999999999999999999654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.33  E-value=0.0091  Score=38.93  Aligned_cols=84  Identities=18%  Similarity=0.299  Sum_probs=55.2

Q ss_pred             CeEEEEccC---chhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           57 EKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        57 ~~ilVtGa~---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      |+|.|+|++   +..|..+.+.|++.|++|+.+..+.+.      -.+..++       .++.++-..+|+++-+...  
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~------i~G~~~y-------~sl~~lp~~~D~vvi~vp~--   66 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE------IEGLKCY-------RSVRELPKDVDVIVFVVPP--   66 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE------ETTEECB-------SSGGGSCTTCCEEEECSCH--
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc------ccCcccc-------ccchhccccceEEEEEeCH--
Confidence            689999987   779999999999999998877433211      0122222       2233333468988876543  


Q ss_pred             CCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          134 SNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                                ..+..+++.|.+.|++.+++-+
T Consensus        67 ----------~~~~~~l~~~~~~g~k~v~~~~   88 (116)
T d1y81a1          67 ----------KVGLQVAKEAVEAGFKKLWFQP   88 (116)
T ss_dssp             ----------HHHHHHHHHHHHTTCCEEEECT
T ss_pred             ----------HHHHHHHHHHHhcCCceEEecc
Confidence                      2345667888888988766543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.008  Score=42.02  Aligned_cols=79  Identities=20%  Similarity=0.163  Sum_probs=53.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCC-CCeeEEEccC--CCHHHHHHHhcCCCEEEEcc
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA-NNVIWHQGNL--LSSDSWKEALDGVTAVISCV  129 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~Dl--~d~~~~~~~~~~~d~vi~~a  129 (200)
                      +..+|+++|+|.+.-+|+-++..|+++|+.|+.+..+.......... .-......|+  ..++.+++....+|++|..+
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsav  105 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV  105 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEcc
Confidence            46899999999999999999999999999998776542221110000 0001111222  34677888888899999988


Q ss_pred             cc
Q 029008          130 GG  131 (200)
Q Consensus       130 g~  131 (200)
                      |.
T Consensus       106 G~  107 (171)
T d1edza1         106 PS  107 (171)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.32  E-value=0.0035  Score=44.73  Aligned_cols=71  Identities=14%  Similarity=0.074  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|.|. |.||+.+++.+...|.+|...++..........   .     .....+++++++..+|+|+.+....
T Consensus        44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~---~-----~~~~~~~l~~ll~~sD~v~l~~plt  114 (191)
T d1gdha1          44 KLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS---Y-----QATFHDSLDSLLSVSQFFSLNAPST  114 (191)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH---H-----TCEECSSHHHHHHHCSEEEECCCCC
T ss_pred             eecccceEEeec-ccchHHHHHHHHhhccccccccccccccchhhc---c-----cccccCCHHHHHhhCCeEEecCCCC
Confidence            356899999997 999999999999999999998876543211100   0     0111245778888899887766543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.31  E-value=0.0075  Score=40.70  Aligned_cols=87  Identities=15%  Similarity=0.106  Sum_probs=56.6

Q ss_pred             CCCeEEEEccC---chhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..++|.|+|++   +..|..+++.|.+.|++|+.+..+...-      .+..++       .++.++-..+|.++-+..+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i------~G~~~~-------~sl~dlp~~iD~v~i~vp~   84 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV------LGRKCY-------PSVLDIPDKIEVVDLFVKP   84 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEECB-------SSGGGCSSCCSEEEECSCH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc------CCCccc-------ccccccCccceEEEEEeCH
Confidence            35799999988   7899999999999999988775432110      112221       1123333467888776443


Q ss_pred             CCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                                  .....+++.|.+.|++.+++..+
T Consensus        85 ------------~~~~~~~~e~~~~g~k~v~~~~G  107 (139)
T d2d59a1          85 ------------KLTMEYVEQAIKKGAKVVWFQYN  107 (139)
T ss_dssp             ------------HHHHHHHHHHHHHTCSEEEECTT
T ss_pred             ------------HHHHHHHHHHHHhCCCEEEEecc
Confidence                        23456677887888876665443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.30  E-value=0.0031  Score=44.90  Aligned_cols=72  Identities=10%  Similarity=-0.028  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~  132 (200)
                      ...++++.|.|. |.||+.+++.|...|.+|...++.......... .+       +....+++++++.+|+|+.+....
T Consensus        41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~-~~-------~~~~~~l~~~l~~sD~v~~~~plt  111 (188)
T d2naca1          41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE-LN-------LTWHATREDMYPVCDVVTLNCPLH  111 (188)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH-HT-------CEECSSHHHHGGGCSEEEECSCCC
T ss_pred             eccccceeeccc-cccchhhhhhhhccCceEEEEeecccccccccc-cc-------ccccCCHHHHHHhccchhhccccc
Confidence            357889999997 999999999999999999999886543211100 01       112344677888899887776543


Q ss_pred             C
Q 029008          133 G  133 (200)
Q Consensus       133 ~  133 (200)
                      .
T Consensus       112 ~  112 (188)
T d2naca1         112 P  112 (188)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.29  E-value=0.0023  Score=47.43  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=31.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      +|+|+|+|| |.-|...+.+|.+.|++|+++.+++
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            489999998 9999999999999999999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.29  E-value=0.0037  Score=40.83  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .+++++|+|| |++|..++..|.+.|.+|.++.|.+.
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            3579999998 99999999999999999999998754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.28  E-value=0.0026  Score=42.23  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=31.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .++++|.|| |++|..++..|.+.|.+|+++.+.+.
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            479999998 99999999999999999999988753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.26  E-value=0.0025  Score=44.83  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~   91 (200)
                      .++||+|+|| |..|...+..|.++|+ +|+++.|...
T Consensus         3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            3589999998 9999999999999998 5999988753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.22  E-value=0.0026  Score=44.37  Aligned_cols=76  Identities=16%  Similarity=0.064  Sum_probs=45.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag~  131 (200)
                      .+.+|+|.|+ |.+|...++.+...|. .|+++++++++..........+++.-+=.+.+.+.+...  ++|++|.++|.
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~  110 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS  110 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence            4568999986 9999999999988886 556666665432111111222344322112233333332  58999999985

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.21  E-value=0.0072  Score=40.57  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=23.9

Q ss_pred             eEEEEccCchhHHHHHHHHHHC-CCcEEEe
Q 029008           58 KLLVLGGNGFVGSHICREALDR-GLTVASL   86 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~   86 (200)
                      ||.|.|++|.+|+.+++.+.+. ++++.+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~   30 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE   30 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence            6899999999999999998775 4566543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.19  E-value=0.0033  Score=44.42  Aligned_cols=74  Identities=14%  Similarity=0.071  Sum_probs=51.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEcc--------------------C--CCHHH
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGN--------------------L--LSSDS  114 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D--------------------l--~d~~~  114 (200)
                      -+|+|.|| |-.|..-++-....|.+|.+++.+.....+.. .....++..+                    +  ...+.
T Consensus        30 a~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~-~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          30 ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHHHH
T ss_pred             cEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH-HhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            49999998 99999999999999999999998876532211 0111111111                    1  12455


Q ss_pred             HHHHhcCCCEEEEccccC
Q 029008          115 WKEALDGVTAVISCVGGF  132 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~  132 (200)
                      +.+.+.++|+||-.+-..
T Consensus       108 l~~~l~~aDlVI~talip  125 (183)
T d1l7da1         108 VLKELVKTDIAITTALIP  125 (183)
T ss_dssp             HHHHHTTCSEEEECCCCT
T ss_pred             HHHHHHhhhhheeeeecC
Confidence            667788999999987643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.17  E-value=0.0032  Score=48.37  Aligned_cols=35  Identities=31%  Similarity=0.628  Sum_probs=32.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      +|+|+|+|| |.-|...|..|.+.|++|.++.++..
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            689999998 99999999999999999999987753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.16  E-value=0.0028  Score=47.01  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -|+|+|| |..|..++.+|+++|++|+++.+..
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3999998 9999999999999999999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.14  E-value=0.0032  Score=47.46  Aligned_cols=37  Identities=19%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ....|+|+|+|| |..|...+..|.++|++|+++.++.
T Consensus        27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            345679999998 9999999999999999999998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.12  E-value=0.0026  Score=45.16  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      -++|.|+|+ |.+|..++..++..|++|++.+++++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            468999998 99999999999999999999998754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.03  E-value=0.004  Score=42.83  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=29.8

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~~   90 (200)
                      +|||+|+|| |+.|..++..|.+.+.  +|+++.+++
T Consensus         2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            689999998 9999999999999885  678877664

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.98  E-value=0.013  Score=40.63  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=40.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .||.|.|. |.+|+..++.+.+. +.+++++.........     ...+...     .++..+.+++|+|+.+...
T Consensus         4 irvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~D~Vvi~tp~   68 (170)
T d1f06a1           4 IRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDT-----KTPVFDV-----ADVDKHADDVDVLFLCMGS   68 (170)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSS-----SSCEEEG-----GGGGGTTTTCSEEEECSCT
T ss_pred             ceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccccc-----ccccccc-----hhhhhhccccceEEEeCCC
Confidence            47899996 99999999999876 5676665543332111     1122211     1233455689999988764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.94  E-value=0.012  Score=38.92  Aligned_cols=92  Identities=12%  Similarity=0.095  Sum_probs=59.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHH-CCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc-CCCEEEEccccCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-GVTAVISCVGGFGS  134 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~~ag~~~~  134 (200)
                      .+++|.|| |.+|..+++++.. .|+++++..-+..... ...-.++.++..     +.+.++.+ .+++++-+...   
T Consensus         4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~-G~~I~Gi~V~~~-----~~l~~~~~~~i~iai~~i~~---   73 (126)
T d2dt5a2           4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKV-GRPVRGGVIEHV-----DLLPQRVPGRIEIALLTVPR---   73 (126)
T ss_dssp             EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTT-TCEETTEEEEEG-----GGHHHHSTTTCCEEEECSCH---
T ss_pred             ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhc-CCEECCEEEecH-----HHHHHHHhhcccEEEEeCCH---
Confidence            48999998 9999999998753 4778887765433321 111235666533     34555554 46666655432   


Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 029008          135 NSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (200)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~  167 (200)
                               .....+++.+.+.|++.+...+..
T Consensus        74 ---------~~~~~I~d~l~~~gIk~I~~f~~~   97 (126)
T d2dt5a2          74 ---------EAAQKAADLLVAAGIKGILNFAPV   97 (126)
T ss_dssp             ---------HHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             ---------HHHHHHHHHHHHcCCCEEeecCce
Confidence                     223457788888899988887764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.88  E-value=0.011  Score=41.28  Aligned_cols=77  Identities=12%  Similarity=0.109  Sum_probs=49.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEE-ccCCC-HHHHHHHh--cCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQ-GNLLS-SDSWKEAL--DGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~Dl~d-~~~~~~~~--~~~d~vi~~  128 (200)
                      ..+.+|+|+|+ |.+|...++.+...|. +|+++++++++........-..++. -|-.+ .+.+.+..  .++|++|.+
T Consensus        28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            45678999997 9999999999999995 7999998876632111111112221 12211 23333333  369999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      .|.
T Consensus       107 ~g~  109 (176)
T d1d1ta2         107 IGH  109 (176)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            886

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.055  Score=35.58  Aligned_cols=76  Identities=16%  Similarity=0.335  Sum_probs=54.8

Q ss_pred             CCCCeEEEEccC----------chhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--C
Q 029008           54 PPSEKLLVLGGN----------GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--G  121 (200)
Q Consensus        54 ~~~~~ilVtGa~----------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~  121 (200)
                      ...++|+|.|+.          -+.+.+.++.|.+.|++++.+..+++.-....  .-..-+..+....+.+.++++  +
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~--d~aD~lYfePlt~e~v~~Ii~~E~   82 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP--EMADATYIEPIHWEVVRKIIEKER   82 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG--GGSSEEECSCCCHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh--hhcceeeeecCCHHHHHHHHHHhC
Confidence            456899999983          36788999999999999999988876632211  122233445566788888775  7


Q ss_pred             CCEEEEcccc
Q 029008          122 VTAVISCVGG  131 (200)
Q Consensus       122 ~d~vi~~ag~  131 (200)
                      +|.|+-..|.
T Consensus        83 pd~il~~~GG   92 (127)
T d1a9xa3          83 PDAVLPTMGG   92 (127)
T ss_dssp             CSEEECSSSH
T ss_pred             cCCeEEEeee
Confidence            8999877664

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.87  E-value=0.0034  Score=43.48  Aligned_cols=68  Identities=16%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEcccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~  131 (200)
                      ..+|+++|.|- |++|+.+++.|...|.+|++...++-...+.. -+++++..        ++++++..|++|-+.|-
T Consensus        21 laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~-mdGf~v~~--------~~~a~~~aDi~vTaTGn   88 (163)
T d1v8ba1          21 ISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFNVVT--------LDEIVDKGDFFITCTGN   88 (163)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCEECC--------HHHHTTTCSEEEECCSS
T ss_pred             ecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhhHHHH-hcCCccCc--------hhHccccCcEEEEcCCC
Confidence            57899999996 99999999999999999999988765433321 23444332        35666667777776663

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.83  E-value=0.0046  Score=42.58  Aligned_cols=74  Identities=22%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCC---HHHHHHHhcCCCEEEEcccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS---SDSWKEALDGVTAVISCVGG  131 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~~~d~vi~~ag~  131 (200)
                      .+.+|+|.|+ |.+|...+..+...|++|+++++++++.... ..-++..+. |..+   .+.+.....+.|.+|.+++.
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~-k~~Ga~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~  103 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVV-NPLKEDAAKFMKEKVGGVHAAVVTAVS  103 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEE-CTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhh-hhcCcceec-ccccchhhhhcccccCCCceEEeecCC
Confidence            4568999876 9999999999999999999998876542111 111222222 2222   23344555666767666653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.81  E-value=0.0095  Score=43.34  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=32.9

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ...++|+|+|| |..|...+..|.++|++|+++.++.
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence            46789999998 9999999999999999999998765

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.72  E-value=0.015  Score=43.05  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      -|+|+|| |..|..++.+|+++|++|+++.+...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3899998 99999999999999999999998643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.69  E-value=0.0056  Score=45.15  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.4

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      |+|+|+|| |.-|...+.+|.++|++|+++.++.
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            57999998 9999999999999999999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0078  Score=44.99  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      +.++|+|+|| |.-|...+.+|.++|++|+++-.+.
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4568999998 9999999999999999999987653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.63  E-value=0.0071  Score=43.13  Aligned_cols=75  Identities=20%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccCCCH---HHHHHHhc--CCCEEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEALD--GVTAVIS  127 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~--~~d~vi~  127 (200)
                      ..+.+|+|.|+ |.+|...+..+...|. +|+++++++++... ...-+...+. |..+.   +.+.++..  ++|++|.
T Consensus        24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~-a~~~Ga~~~~-~~~~~~~~~~i~~~t~g~g~D~vid  100 (195)
T d1kola2          24 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAH-AKAQGFEIAD-LSLDTPLHEQIAALLGEPEVDCAVD  100 (195)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHTTCEEEE-TTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHh-hhhccccEEE-eCCCcCHHHHHHHHhCCCCcEEEEE
Confidence            35679999986 9999988888888887 78888877544211 1112233322 33333   33344443  5899999


Q ss_pred             cccc
Q 029008          128 CVGG  131 (200)
Q Consensus       128 ~ag~  131 (200)
                      +.|.
T Consensus       101 ~vG~  104 (195)
T d1kola2         101 AVGF  104 (195)
T ss_dssp             CCCT
T ss_pred             Cccc
Confidence            9884

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.47  E-value=0.0086  Score=41.78  Aligned_cols=35  Identities=23%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      |+|.|+|- |.+|..+++.|++.|++|.+.+|++++
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~   36 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSK   36 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred             CEEEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence            57999996 999999999999999999999987644

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.46  E-value=0.024  Score=39.53  Aligned_cols=98  Identities=10%  Similarity=0.113  Sum_probs=55.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCc-ccccCCCCeeEEEccCCC-----------HHHHHHHhcC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSS-LRDSWANNVIWHQGNLLS-----------SDSWKEALDG  121 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~-~~~~~~~~~~~~~~Dl~d-----------~~~~~~~~~~  121 (200)
                      |..||.|-|- |.||+.+++.+..+. .+|+.+.-..+.. .......+...+..+...           ...+..++.+
T Consensus         1 M~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (172)
T d2czca2           1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK   79 (172)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             CcEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhcc
Confidence            4579999996 999999999998875 4666554322221 111111122222222211           2234455668


Q ss_pred             CCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          122 VTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       122 ~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +|+|+-|.|.+..            ..-++.-.++|+ +.|++|+
T Consensus        80 vDvViEcTG~f~~------------~~~~~~hl~~G~-k~Vi~s~  111 (172)
T d2czca2          80 VDIIVDATPGGIG------------AKNKPLYEKAGV-KAIFQGG  111 (172)
T ss_dssp             CSEEEECCSTTHH------------HHHHHHHHHHTC-EEEECTT
T ss_pred             CCEEEECCCCCCC------------HHHHHHHHHcCC-CEEEECC
Confidence            9999999997531            122333346676 5666665

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.44  E-value=0.017  Score=36.76  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=32.0

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ..+|+|+|.|+ |.-|.-++..|.+.+.+|+.+.|+...
T Consensus        30 f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~~~   67 (107)
T d2gv8a2          30 FVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLGGG   67 (107)
T ss_dssp             GTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             cCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecCcc
Confidence            46899999997 899999999999988888777776543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.36  E-value=0.012  Score=40.76  Aligned_cols=35  Identities=11%  Similarity=0.228  Sum_probs=29.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ..++|+|+|| |++|..++..|.+.|.+|.++.+..
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            3578999998 9999999999999999877765554

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.31  E-value=0.012  Score=44.82  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      |+....|+|+|| |..|...+.+|.++|.+|+++.+.+
T Consensus         4 p~~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           4 PPEEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             CCSEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            445668999998 9999999999999999999998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.01  Score=42.27  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -|+|+|| |.-|...+..|+++|++|.++.++.
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            3799997 9999999999999999999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.26  E-value=0.084  Score=36.16  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=46.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEc-cCCC-HHHHHHHh--cCCCEEEEc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQG-NLLS-SDSWKEAL--DGVTAVISC  128 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~-Dl~d-~~~~~~~~--~~~d~vi~~  128 (200)
                      ..+.+|+|+|+ |.+|...+..+...|. +|+++++++++........--+++.. +-.+ .+.+....  .++|++|-+
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~  105 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC  105 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence            45678999997 7788888888888876 68888877665322111122233321 1111 22333333  369999999


Q ss_pred             ccc
Q 029008          129 VGG  131 (200)
Q Consensus       129 ag~  131 (200)
                      .|.
T Consensus       106 ~G~  108 (175)
T d1cdoa2         106 VGN  108 (175)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            986

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.22  E-value=0.011  Score=44.49  Aligned_cols=33  Identities=24%  Similarity=0.666  Sum_probs=29.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~   90 (200)
                      .+|+|+|| |.+|..++.+|+++|+ +|+++.|+.
T Consensus         2 ~dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            37999998 9999999999999996 699998874

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.16  E-value=0.0089  Score=44.58  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      .+|+|+|| |-.|..++..|.+.|++|.++.+++
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            37999998 8999999999999999999999875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0093  Score=45.20  Aligned_cols=35  Identities=14%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      |..|+|+|| |.-|..+++.|++.|++|.++.++..
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            457999998 99999999999999999999987653

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.12  E-value=0.012  Score=41.47  Aligned_cols=97  Identities=5%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCccc-c--cCCCCee--------EEEccCCCHHHHHHHhcCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR-D--SWANNVI--------WHQGNLLSSDSWKEALDGVT  123 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-~--~~~~~~~--------~~~~Dl~d~~~~~~~~~~~d  123 (200)
                      |-||.|-| .|.||+.+++.+.+++ .+|+++....+.... .  .......        +-...+.-...+..++.++|
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD   79 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD   79 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence            45899999 5999999999999875 577776543322110 0  0000000        00001111123455566799


Q ss_pred             EEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          124 AVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       124 ~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +||-|.|.+..            ..-++...++| +++|+.++
T Consensus        80 iViecTG~f~~------------~e~a~~hl~~G-~KvIi~~~  109 (178)
T d1b7go1          80 IVVDTTPNGVG------------AQYKPIYLQLQ-RNAIFQGG  109 (178)
T ss_dssp             EEEECCSTTHH------------HHHHHHHHHTT-CEEEECTT
T ss_pred             EEEECCCCcCC------------HHHHHHHHHcC-CEEEEECC
Confidence            99999987421            12234445667 46776544

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.96  E-value=0.015  Score=41.62  Aligned_cols=33  Identities=18%  Similarity=0.465  Sum_probs=29.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~   90 (200)
                      ++|+|+|| |.-|...+..|.++|+ +|+++.++.
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            47999998 9999999999999996 799998764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.94  E-value=0.016  Score=44.36  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSG   90 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~   90 (200)
                      +.+|+|+|+|| |.-|...+..|+++|  ++|+++.|+.
T Consensus         2 ~~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           2 PTIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            35789999998 999999999999887  5999998875

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.60  E-value=0.028  Score=40.19  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ...+++|+|-|- |.+|.++++.|.+.|.+|++.+.+.
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchH
Confidence            467899999996 9999999999999999999887654

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.48  E-value=0.16  Score=36.23  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=55.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEccC-------------------CCHHH
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNL-------------------LSSDS  114 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dl-------------------~d~~~  114 (200)
                      ...+|.|+|- |+-|..++..|.+.|. .|-.+.-+.+............+..+.-                   .+.+.
T Consensus        14 ~~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~~~   92 (209)
T d2vapa1          14 TKAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEE   92 (209)
T ss_dssp             TCCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTHHH
T ss_pred             cCCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHHHHH
Confidence            3468999997 9999999999999875 3433332222111111111122211111                   23356


Q ss_pred             HHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCC
Q 029008          115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV  158 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~  158 (200)
                      +.+.+++.|.||-+||....      +.--++..+++.+++.+.
T Consensus        93 I~~~l~~~d~vfi~AGlGGG------TGsgaapvia~~ake~g~  130 (209)
T d2vapa1          93 IKAAIQDSDMVFITCGLGGG------TGTGSAPVVAEISKKIGA  130 (209)
T ss_dssp             HHHHHTTCSEEEEEEETTSS------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHhccCCCEEEEEEeCCCC------ccccHHHHHHHHHHHcCC
Confidence            77788899999999986431      111223345677777665

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.45  E-value=0.036  Score=37.44  Aligned_cols=35  Identities=14%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             CCeEEEE-ccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           56 SEKLLVL-GGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVt-Ga~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ++.++|. .++|++|..++..|.++|.+|+++.+..
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            4456665 2459999999999999999999999875

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.07  Score=40.25  Aligned_cols=34  Identities=24%  Similarity=0.173  Sum_probs=28.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -|.+=--.||..|.+|+++++.+|++|+++.+..
T Consensus        37 VR~ItN~SSGk~G~alA~~~~~~Ga~V~li~g~~   70 (290)
T d1p9oa_          37 VRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR   70 (290)
T ss_dssp             SEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             ceEeCCCCchHHHHHHHHHHHHcCCEEEEEecCC
Confidence            3555556789999999999999999999997653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.38  E-value=0.012  Score=40.83  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=27.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeec
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSR   88 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r   88 (200)
                      |..+|+|+|| |++|..++..|.+.|.+|.++.+
T Consensus         2 m~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           2 LKAPVVVLGA-GLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             CCSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCCCEEEECc-cHHHHHHHHHHHhcCCceEEEEE
Confidence            4457999997 99999999999999987655543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.36  E-value=0.023  Score=40.13  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=27.5

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      |+|.|+| .|++|..++..| ++|++|++.+-+++
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHH
Confidence            5799998 499999998655 67999999987753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.031  Score=44.62  Aligned_cols=72  Identities=15%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc----c---------------------ccC-CCCeeEEEcc
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL----R---------------------DSW-ANNVIWHQGN  108 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----~---------------------~~~-~~~~~~~~~D  108 (200)
                      ..+|+|+|+ |++|..+++.|...|. ++++++.+.=...    +                     ... .-++..+..+
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  115 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK  115 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence            458999998 8899999999999997 7888876531100    0                     001 1245566655


Q ss_pred             CCCHHHHHHHhcCCCEEEEccc
Q 029008          109 LLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus       109 l~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      +.+..  ...++++|+||.+..
T Consensus       116 i~~~~--~~~~~~~DlVi~~~D  135 (426)
T d1yovb1         116 IQDFN--DTFYRQFHIIVCGLD  135 (426)
T ss_dssp             GGGBC--HHHHTTCSEEEECCS
T ss_pred             ccchH--HHHHHhcchheeccC
Confidence            54433  357788999988743

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.32  E-value=0.0047  Score=44.63  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=24.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVA   84 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~   84 (200)
                      |+|+|+|| |-+|...+.+|+++|++|+
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCce
Confidence            58999998 9999999999999998653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.29  E-value=0.031  Score=40.77  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=30.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR   91 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~   91 (200)
                      .+|+|+|| |..|..++..|.+.|. +|.++.+++.
T Consensus         2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            58999998 9999999999999995 8888888654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.25  E-value=0.034  Score=35.79  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=28.9

Q ss_pred             CCeEEEEccCchhHHHHHHHHHH---CCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~---~g~~V~~~~r~~~   91 (200)
                      +++++|+|| |++|-.++..|.+   .|.+|+++.|.+.
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence            479999998 9999999976654   4889999988653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.24  E-value=0.026  Score=36.44  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=28.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC---CCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR---GLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~---g~~V~~~~r~~~   91 (200)
                      +++++|.|| |++|..++..|.+.   |.+|+++.|.+.
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            479999998 99999999766654   567999988643

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.10  E-value=0.035  Score=38.92  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             CCeEEE-EccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           56 SEKLLV-LGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        56 ~~~ilV-tGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      +.+++| +||+|.+|...++.....|.+|++++|+.+.
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~   66 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN   66 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccc
Confidence            456666 5899999999999999999999999987654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.08  E-value=0.012  Score=43.13  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ....+++|+|-|- |-+|.++++.|.+.|++|++.+.+.
T Consensus        35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~   72 (230)
T d1leha1          35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNK   72 (230)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccH
Confidence            3467899999997 9999999999999999999877653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.95  E-value=0.03  Score=38.89  Aligned_cols=37  Identities=11%  Similarity=0.202  Sum_probs=31.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ..+|+|+|.|+ |+.+++++..|.+.| +|+++.|+.++
T Consensus        16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~k   52 (177)
T d1nvta1          16 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEK   52 (177)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhH
Confidence            46789999997 899999999997766 89999888654

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=93.94  E-value=0.32  Score=34.16  Aligned_cols=93  Identities=19%  Similarity=0.259  Sum_probs=54.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCCcccccCCCCeeEEEcc-C------------------CCHHH
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQGN-L------------------LSSDS  114 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~D-l------------------~d~~~  114 (200)
                      .||.|+|- |+-|..++.+|.+.|.   +.+++.-+  ...........++.-+. +                  .+.+.
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD--~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~~~   77 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTD--LQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEK   77 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESC--HHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHHH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCC--HHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHHHH
Confidence            37899997 9999999999999874   33444432  21111111122222211 1                  23466


Q ss_pred             HHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCC
Q 029008          115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV  158 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~  158 (200)
                      +.+.+++.|.||-+||....      +.--++-.+++.|++.+.
T Consensus        78 I~~~l~~~d~vfi~AGlGGg------TGtgaapviA~~ake~g~  115 (194)
T d1w5fa1          78 IREVLQDTHMVFITAGFGGG------TGTGASPVIAKIAKEMGI  115 (194)
T ss_dssp             HHHHTTTCSEEEEEEETTSS------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCeEEEEEecCCC------cccchHHHHHHHHHHcCC
Confidence            77888899999999985431      111223356677777665

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.93  E-value=0.16  Score=38.18  Aligned_cols=36  Identities=25%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      ...+++|+|-|- |-+|.++++.|.+.|++|++++-.
T Consensus        33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcc
Confidence            467899999997 999999999999999999887643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.90  E-value=0.033  Score=37.80  Aligned_cols=31  Identities=16%  Similarity=0.374  Sum_probs=26.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ||+|+|| |++|..++..|. ++.+|+++.+.+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence            7899998 999999999885 578999998754

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=93.90  E-value=0.034  Score=37.80  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=29.5

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHC--CCcEEEeecCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~   90 (200)
                      +|+|.|.|+||.||....+-+.+.  .++|.+++-+.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            589999999999999999988876  47888877554

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.85  E-value=0.069  Score=36.21  Aligned_cols=38  Identities=29%  Similarity=0.343  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCc-EEEeecCC
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSG   90 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~-V~~~~r~~   90 (200)
                      .+..+++|+|+|| |..|.-.+..+.+.|++ |+++.|+.
T Consensus        41 ~p~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          41 LPSIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cccCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3345678999998 99999999999999975 77777764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.036  Score=41.64  Aligned_cols=31  Identities=32%  Similarity=0.550  Sum_probs=28.7

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      |+|+|| |.-|...+..|.++|++|+++.++.
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            789998 9999999999999999999998764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.74  E-value=0.13  Score=35.53  Aligned_cols=105  Identities=12%  Similarity=0.054  Sum_probs=62.1

Q ss_pred             CCeEEEEccCchhHHH--HHHHHHHC----CCcEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhc
Q 029008           56 SEKLLVLGGNGFVGSH--ICREALDR----GLTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      .+||.|+|| |.+|..  ++..|+..    +.++++++.++++...         .......++...     .+.+++++
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~-----td~~eaL~   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT-----MNLDDVII   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHHT
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe-----CChhhccc
Confidence            469999997 888864  34445433    3589999988654210         111223333322     23567889


Q ss_pred             CCCEEEEccccCCCC----------------------cc--------cchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          121 GVTAVISCVGGFGSN----------------------SY--------MYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       121 ~~d~vi~~ag~~~~~----------------------~~--------~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      ++|+||+.++.....                      ..        ....|+.-...+++..++...+-++++-|
T Consensus        76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T  151 (171)
T d1obba1          76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA  151 (171)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence            999999998742100                      00        01236666677788888877664444433

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.045  Score=36.33  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             CCeEEEEccCchhHHHHHHHHH----HCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGSHICREAL----DRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~----~~g~~V~~~~r~~~   91 (200)
                      .++++|.|| |++|..++..|.    +.|.+|+++.+.+.
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            579999998 999999998885    45899999887643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.55  E-value=0.04  Score=38.59  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=27.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~   90 (200)
                      |||+|+|| |++|..++..|.+.+  .+|+++.|..
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999998 999999999998875  5788887754

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.12  Score=36.60  Aligned_cols=73  Identities=10%  Similarity=-0.021  Sum_probs=45.3

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccccc---------CCCCeeEEE-ccCCCHHHHHHHhc-CCCEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS---------WANNVIWHQ-GNLLSSDSWKEALD-GVTAV  125 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~~-~Dl~d~~~~~~~~~-~~d~v  125 (200)
                      |+|+|.|. +..|..+.+.|.+.|++|.++...+++.....         ...++.++. .|+.+++.++.+-+ ++|++
T Consensus         1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dli   79 (203)
T d2blna2           1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVI   79 (203)
T ss_dssp             CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEE
T ss_pred             CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhcccce
Confidence            57888875 77899999999999999977664433211111         012455544 45666665544332 68988


Q ss_pred             EEccc
Q 029008          126 ISCVG  130 (200)
Q Consensus       126 i~~ag  130 (200)
                      |....
T Consensus        80 i~~g~   84 (203)
T d2blna2          80 FSFYY   84 (203)
T ss_dssp             EEESC
T ss_pred             eeeec
Confidence            87654

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.049  Score=37.00  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=29.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~   90 (200)
                      ||+|.|.|+||.||.....-+.+..  ++|.+++-+.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~   37 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK   37 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            6899999999999999999888763  6888876544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.25  E-value=0.2  Score=34.57  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=54.0

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc-cccCCCCeeEEEcc-----------CCCHHHHHHHhcCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL-RDSWANNVIWHQGN-----------LLSSDSWKEALDGV  122 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~~~~~~~~~~~~D-----------l~d~~~~~~~~~~~  122 (200)
                      |++|.|-|- |.||+.+.+.+..++. +|+.+.-..+... ......+......+           +.-...+..++.++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence            578999995 9999999999988874 6665543222210 00000111111111           11112345566789


Q ss_pred             CEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          123 TAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       123 d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |+||-|.|.+..            ..-++.-.++|+ ++|++|+
T Consensus        80 DvViEcTG~f~~------------~~~~~~hl~~G~-K~vi~~~  110 (171)
T d1cf2o1          80 DIVIDCTPEGIG------------AKNLKMYKEKGI-KAIFQGG  110 (171)
T ss_dssp             SEEEECCSTTHH------------HHHHHHHHHTTC-EEEECTT
T ss_pred             CEEEEccCCCCC------------HHHHHHHHHcCC-CEEEECC
Confidence            999999987531            111333345675 6676665

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.21  E-value=0.41  Score=36.50  Aligned_cols=108  Identities=17%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc--cccCCCCeeEEEccCCCHHH---HHHHhcCCCEEEE
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDS---WKEALDGVTAVIS  127 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~Dl~d~~~---~~~~~~~~d~vi~  127 (200)
                      |..+-+|+=.+- ..-|-...+.|+..|++|+=+-+......  ......+=+.+..|+.+++.   +.++++++|+||+
T Consensus         3 PL~girVld~~~-~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~   81 (359)
T d1x74a1           3 PLSGLRVVELAG-IGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIE   81 (359)
T ss_dssp             TTTTCEEEEECC-STHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCCEEEEcCC-chHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEe
Confidence            456667766653 56677888888999999998865432111  11123455788899988754   5567789999999


Q ss_pred             ccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCc
Q 029008          128 CVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV  171 (200)
Q Consensus       128 ~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~  171 (200)
                      |-.+..    +-+..+     =.+.+++.+. ++|++|-..||.
T Consensus        82 n~~pg~----~~~lgl-----~~~~l~~~nP-~lI~~sisgfG~  115 (359)
T d1x74a1          82 GYRPGV----TERLGL-----GPEECAKVND-RLIYARMTGWGQ  115 (359)
T ss_dssp             CSCTTH----HHHHTC-----SHHHHHHHCT-TCEEEEEESSCS
T ss_pred             cCCCCc----hhhcCC-----CHHHHHhhcC-CceEEEEeCCCC
Confidence            865421    000000     0223334443 688888766664

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.11  E-value=0.057  Score=38.96  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=30.0

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      -|+|+|| |-.|...+..|.++|++|.++.+...
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5899998 99999999999999999999988753

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.7  Score=35.74  Aligned_cols=109  Identities=12%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCccc-------ccCCCCeeEEEccCCCHHH---HHHHhcC
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDS---WKEALDG  121 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~Dl~d~~~---~~~~~~~  121 (200)
                      .|..+-+|+=.+. ..-|-...+.|+..|++|+=+-+.......       .....+-+.+..|+.+++.   +.++++.
T Consensus         7 gPL~GirVld~~~-~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~   85 (402)
T d1xk7a1           7 GPLAGLRVVFSGI-EIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMET   85 (402)
T ss_dssp             STTTTCEEEEECC-SSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEeCC-hhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhh
Confidence            3567778886663 566888889999999999988754311110       1113456788999988754   5577889


Q ss_pred             CCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCc
Q 029008          122 VTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV  171 (200)
Q Consensus       122 ~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~  171 (200)
                      +|+||+|--+...  .-+...       .+.+++.+ .++|++|-+.||.
T Consensus        86 aDv~i~n~rpg~~--~~lGl~-------~~~L~~~n-P~lI~~sisgfG~  125 (402)
T d1xk7a1          86 TDIFIEASKGPAF--ARRGIT-------DEVLWQHN-PKLVIAHLSGFGQ  125 (402)
T ss_dssp             CSEEEEECSSSHH--HHTTCC-------HHHHHHHC-TTCEEEEEESSCS
T ss_pred             cCCceeeeccccc--cccccc-------ccchhhcc-ccccceeeecccC
Confidence            9999998543210  000000       22333444 3799999877775

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.048  Score=39.84  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=58.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcc----c--------------------ccCCCCeeEEEccC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL----R--------------------DSWANNVIWHQGNL  109 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----~--------------------~~~~~~~~~~~~Dl  109 (200)
                      ...+|+|.|+ |++|.+++..|+..|. ++++++.+.=+..    +                    ......+.+...+.
T Consensus        29 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~  107 (247)
T d1jw9b_          29 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  107 (247)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence            4569999997 9999999999999997 7777775431100    0                    00112333333232


Q ss_pred             -CCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          110 -LSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       110 -~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                       -+.+.....+...|++|.+...           ...-..+-++|.++++. +|+.+
T Consensus       108 ~~~~~~~~~~~~~~divid~~d~-----------~~~~~~in~~~~~~~ip-~i~g~  152 (247)
T d1jw9b_         108 LLDDAELAALIAEHDLVLDCTDN-----------VAVRNQLNAGCFAAKVP-LVSGA  152 (247)
T ss_dssp             CCCHHHHHHHHHTSSEEEECCSS-----------HHHHHHHHHHHHHHTCC-EEEEE
T ss_pred             hhhhccccccccccceeeeccch-----------hhhhhhHHHHHHHhCCC-ccccc
Confidence             2345556677788888876422           12223445666676653 55544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.82  E-value=0.044  Score=40.39  Aligned_cols=35  Identities=14%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CCeEEEEccCchhHH-----HHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGS-----HICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~-----~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      |++|.|+| -|++|+     .|+..|+++|++|.+++-++.
T Consensus         1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            67899998 799998     467789999999999998864

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=92.76  E-value=0.42  Score=37.32  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC-ccc--------------ccCCCCeeEEEccCCCHHH---
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS-SLR--------------DSWANNVIWHQGNLLSSDS---  114 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~--------------~~~~~~~~~~~~Dl~d~~~---  114 (200)
                      |..+-+||=.+. ..-|-...+.|+..|++|+=+.+.... ...              .....+=+.+.+|+.+++.   
T Consensus         3 PL~GirVld~~~-~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~   81 (427)
T d2vjma1           3 PLDGINVLDFTH-VQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKEL   81 (427)
T ss_dssp             TTTTCEEEECCC-TTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHH
T ss_pred             CCCCCEEEEcCC-hhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHH
Confidence            567777776663 566778888999999999998754211 000              1113356788999988754   


Q ss_pred             HHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCc
Q 029008          115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV  171 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~  171 (200)
                      +.++++.+|+||+|-.+....  -+.+.       .+.+++.+. ++|++|-+.||.
T Consensus        82 ~~~Lv~~aDv~i~n~~pg~~~--rlGL~-------~~~l~~~NP-~LI~~sisgfG~  128 (427)
T d2vjma1          82 LEQMIKKADVMVENFGPGALD--RMGFT-------WEYIQELNP-RVILASVKGYAE  128 (427)
T ss_dssp             HHHHHHHCSEEEECCSTTHHH--HTTCC-------HHHHHHHCT-TCEEEEEESSCT
T ss_pred             HHHHHHhCCeeeECCCcchHH--HcCCC-------chhhhhhCC-ccceeeeecccc
Confidence            567788999999996542100  00000       223334443 699999776664

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.64  E-value=0.25  Score=33.81  Aligned_cols=105  Identities=13%  Similarity=0.020  Sum_probs=59.0

Q ss_pred             CeEEEEccC-chhHHHHHHHHHHCC----CcEEEeecCCCCccc-----------ccCCCCeeEEEccCCCHHHHHHHhc
Q 029008           57 EKLLVLGGN-GFVGSHICREALDRG----LTVASLSRSGRSSLR-----------DSWANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        57 ~~ilVtGa~-G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~-----------~~~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      +||.|+||. .+.+..++..+....    .++.+++.+++....           ........+..  .+|   ..+.++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~--~td---~~~al~   76 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL--TLD---RRRALD   76 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE--ESC---HHHHHT
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee--cCC---chhhcC
Confidence            589999972 244455555554432    378888876543111           00112222222  122   356788


Q ss_pred             CCCEEEEccccCCCC--c--c--------------------cchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          121 GVTAVISCVGGFGSN--S--Y--------------------MYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       121 ~~d~vi~~ag~~~~~--~--~--------------------~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      +.|+||.+++....+  .  .                    ....|+.-...+++...+...+-++++-|
T Consensus        77 gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt  146 (169)
T d1s6ya1          77 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT  146 (169)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            999999999854311  0  0                    01235555667777888887776665554

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.52  E-value=0.85  Score=32.00  Aligned_cols=92  Identities=17%  Similarity=0.197  Sum_probs=55.2

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC---cEEEeecCCCCcccccCCCCeeEEEcc-----------C--------CCHHHH
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQGN-----------L--------LSSDSW  115 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~D-----------l--------~d~~~~  115 (200)
                      +|-|+|- |+.|..++.+|.+.|.   +.+++.-+.+..  ...+...++..++           .        .+.+.+
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~~L--~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~~I   79 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQAL--KNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRERI   79 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTGGG--SSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHHHH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHHHH--hcCCccceeccccccccCCCCCCChHHHHHHHHHHHHHH
Confidence            5788887 9999999999999874   445544432221  1111122222111           1        244667


Q ss_pred             HHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCC
Q 029008          116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV  158 (200)
Q Consensus       116 ~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~  158 (200)
                      .+.+++.|.||-+||....-      .--++-.+++.|++.+.
T Consensus        80 ~~~l~~~d~vfi~AGlGGGT------GtgaapviA~~ake~g~  116 (198)
T d1ofua1          80 SEVLEGADMVFITTGMGGGT------GTGAAPIIAEVAKEMGI  116 (198)
T ss_dssp             HHHHTTCSEEEEEEETTSSH------HHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCCCeEEEEecCCCCc------cccHHHHHHHHHHHcCC
Confidence            78888999999999864311      11223346777777765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.26  Score=35.18  Aligned_cols=72  Identities=10%  Similarity=-0.000  Sum_probs=43.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCc-----------------------ccccCCCCeeEEEccCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------------------LRDSWANNVIWHQGNLL  110 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------------------~~~~~~~~~~~~~~Dl~  110 (200)
                      ..+.+||..|++.  | ..+..|+++|++|++++-++..-                       .......+++++.+|+.
T Consensus        44 ~~~~rvLd~GCG~--G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          44 KSGLRVFFPLCGK--A-VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             CCSCEEEETTCTT--C-THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCEEEEeCCCC--c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            3567999999742  3 44677788999999998764210                       00112347888888875


Q ss_pred             CHHHHHHHhcCCCEEEEccc
Q 029008          111 SSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus       111 d~~~~~~~~~~~d~vi~~ag  130 (200)
                      +...  ..-...|+|+-...
T Consensus       121 ~l~~--~~~~~fd~i~~~~~  138 (229)
T d2bzga1         121 DLPR--TNIGKFDMIWDRGA  138 (229)
T ss_dssp             GGGG--SCCCCEEEEEESSS
T ss_pred             hccc--cccCceeEEEEEEE
Confidence            4331  11123577766544

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.24  E-value=0.57  Score=32.95  Aligned_cols=94  Identities=19%  Similarity=0.173  Sum_probs=54.0

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCC-cEEEeecCCCCcccccCCCCeeEEEc-----------c--------CCCHHHHHH
Q 029008           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQG-----------N--------LLSSDSWKE  117 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~-----------D--------l~d~~~~~~  117 (200)
                      +|-|+|- |+-|..++.++.+.|. .|-.+.-+.+...........++..+           |        ..+.+.+.+
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~~~I~~   81 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDEIEE   81 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTHHHHHH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchHHHHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHHHHHHH
Confidence            4677886 8889999999999875 34333333222111111112222222           1        134567778


Q ss_pred             HhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCC
Q 029008          118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV  158 (200)
Q Consensus       118 ~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~  158 (200)
                      .+++.|.||-+||....      +..-++--+++.|++.|+
T Consensus        82 ~l~~~d~vfi~AGlGGg------TGtGaaPviA~iake~g~  116 (198)
T d1rq2a1          82 LLRGADMVFVTAGEGGG------TGTGGAPVVASIARKLGA  116 (198)
T ss_dssp             HHTTCSEEEEEEETTSS------HHHHHHHHHHHHHHHHTC
T ss_pred             HhcCCCEEEEEEecCCC------CCcchHHHHHHHHHHcCC
Confidence            88899999999986431      111223345677777665

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.13  E-value=0.11  Score=38.10  Aligned_cols=36  Identities=19%  Similarity=0.136  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      ...+++|+|-|. |-+|.++++.|.+.|++|++++-.
T Consensus        28 ~l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence            357899999996 999999999999999999887643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.12  E-value=0.095  Score=37.32  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             CCCeEEEEccCchhHH-----HHHHHHHHCCCcEEEeecC
Q 029008           55 PSEKLLVLGGNGFVGS-----HICREALDRGLTVASLSRS   89 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~-----~l~~~L~~~g~~V~~~~r~   89 (200)
                      |+|.|.|+|+.|++|+     .++..|+++|.+|.+++-+
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            4678999999999998     5788888999999999855

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=92.03  E-value=0.082  Score=40.46  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=28.4

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      -|+|+|+ |+-|..++.+|.+.|++|.++-+-
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcCeEEEEecC
Confidence            4789996 999999999999999999999874

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.15  Score=37.45  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCchhHHH-----HHHHHHHCCCcEEEeecCCCC
Q 029008           55 PSEKLLVLGGNGFVGSH-----ICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~-----l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      .+++|+|+.|-|++|+.     |+..|+++|++|.+++-++..
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            46788888889999995     578999999999999998654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.86  E-value=0.093  Score=39.13  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -|+|+|+ |..|...+..|+++|.+|+++.+..
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            6899997 9999999999999999999998764

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=91.84  E-value=1.1  Score=34.72  Aligned_cols=109  Identities=15%  Similarity=0.112  Sum_probs=66.7

Q ss_pred             CCCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC-Cccc--------------ccCCCCeeEEEccCCCHHH--
Q 029008           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR-SSLR--------------DSWANNVIWHQGNLLSSDS--  114 (200)
Q Consensus        52 ~~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~--------------~~~~~~~~~~~~Dl~d~~~--  114 (200)
                      .|..+-+||=.+. ..-|-...+.|+..|++|+=+-+... ....              .....+=+-+..|+.+++.  
T Consensus         3 ~PL~GirVld~~~-~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~   81 (417)
T d1q7ea_           3 TPLQGIKVLDFTG-VQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKE   81 (417)
T ss_dssp             CTTTTCEEEECCC-TTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHH
T ss_pred             CCCCCCEEEEcCC-hhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHH
Confidence            3566777776663 56677888888999999998875321 1000              1113456788999988755  


Q ss_pred             -HHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEeccccCc
Q 029008          115 -WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV  171 (200)
Q Consensus       115 -~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS~~~~~  171 (200)
                       +.++++++|++|+|--+..-..-  ...       .+.+++.+ .++|++|-+.||.
T Consensus        82 ~~~~Li~~aDv~i~n~~pg~~~rl--Gl~-------~~~l~~~n-P~lI~~sisgfG~  129 (417)
T d1q7ea_          82 VMEKLIREADILVENFHPGAIDHM--GFT-------WEHIQEIN-PRLIFGSIKGFDE  129 (417)
T ss_dssp             HHHHHHHHCSEEEECCCC---------CC-------HHHHHHHC-TTCEEEEEESSCT
T ss_pred             HHHHHHhcCcccEeccCCCcHhhc--CCC-------HHHHHhhC-CCEEEEeeecccc
Confidence             44778899999999654211100  000       12233334 4799999777764

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=91.66  E-value=0.17  Score=33.51  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=29.1

Q ss_pred             CCCeEEEEccC---chhHHHHHHHHHHCCCcEEEeec
Q 029008           55 PSEKLLVLGGN---GFVGSHICREALDRGLTVASLSR   88 (200)
Q Consensus        55 ~~~~ilVtGa~---G~iG~~l~~~L~~~g~~V~~~~r   88 (200)
                      ..|+|.|+|++   +..|..+.+.|.+.|++++.+.-
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~   48 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNP   48 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECG
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEe
Confidence            35789999988   67999999999999999887654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.56  E-value=0.096  Score=37.26  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=30.4

Q ss_pred             CCeEEEEccCchhHH-----HHHHHHHHCCCcEEEeecCC
Q 029008           56 SEKLLVLGGNGFVGS-----HICREALDRGLTVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~-----~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ||.|.|+++-|++|+     +++..|+++|.+|.+++-+.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            578999999999998     57888999999999998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=91.43  E-value=0.17  Score=34.61  Aligned_cols=70  Identities=13%  Similarity=0.035  Sum_probs=42.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc---c---------------ccCCCCeeEEEccCCCHHHH
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---R---------------DSWANNVIWHQGNLLSSDSW  115 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~---------------~~~~~~~~~~~~Dl~d~~~~  115 (200)
                      ..+.+||..|++  .|. .+..|+++|++|++++.++.--.   +               ........++.+|..+... 
T Consensus        19 ~~~~rvLd~GCG--~G~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-   94 (201)
T d1pjza_          19 VPGARVLVPLCG--KSQ-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA-   94 (201)
T ss_dssp             CTTCEEEETTTC--CSH-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH-
T ss_pred             CCCCEEEEecCc--CCH-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc-
Confidence            356799999963  333 55577778999999987742100   0               0012356788888876542 


Q ss_pred             HHHhcCCCEEEEc
Q 029008          116 KEALDGVTAVISC  128 (200)
Q Consensus       116 ~~~~~~~d~vi~~  128 (200)
                       ......|+|+..
T Consensus        95 -~~~~~~D~i~~~  106 (201)
T d1pjza_          95 -RDIGHCAAFYDR  106 (201)
T ss_dssp             -HHHHSEEEEEEE
T ss_pred             -ccccceeEEEEE
Confidence             222346776653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.37  E-value=0.12  Score=37.44  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .|+|+|| |-.|...+..|.++|.+|.++.+.+.
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5899998 99999999999999999999998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=91.31  E-value=0.12  Score=38.14  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.1

Q ss_pred             eEEEEccCchhHHHHHHHHHHC-CCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDR-GLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~~r~~   90 (200)
                      -|+|+|| |.-|...+.+|+++ |++|.++.+.+
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCCeEEEEecCC
Confidence            5999998 99999999999875 99999999875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=91.23  E-value=0.11  Score=39.12  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=29.2

Q ss_pred             eEEEEccCchhHHHHHHHHH-----HCCCcEEEeecCCCC
Q 029008           58 KLLVLGGNGFVGSHICREAL-----DRGLTVASLSRSGRS   92 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~-----~~g~~V~~~~r~~~~   92 (200)
                      -|+|+|| |-.|..++..|+     +.|++|+++.|++..
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4899998 999999999996     469999999987543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.09  E-value=0.083  Score=37.08  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=27.0

Q ss_pred             CeEEEEccCchhHH-----HHHHHHHHCCCcEEEee
Q 029008           57 EKLLVLGGNGFVGS-----HICREALDRGLTVASLS   87 (200)
Q Consensus        57 ~~ilVtGa~G~iG~-----~l~~~L~~~g~~V~~~~   87 (200)
                      |+++|||-..++|+     .|+..|.++|++|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            78999997559998     58899999999999986

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.09  E-value=0.13  Score=36.65  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=29.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC--CCcEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDR--GLTVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~--g~~V~~~~r~~   90 (200)
                      ++|.|+|| |--|...+.+|.++  |++|+++.+.+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999998 99999999999875  78999998875

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=90.92  E-value=0.09  Score=35.84  Aligned_cols=96  Identities=13%  Similarity=0.000  Sum_probs=53.3

Q ss_pred             CeEEEEccCchhHHH-HHHHHHHC-CCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHh-cCCCEEEEccccCC
Q 029008           57 EKLLVLGGNGFVGSH-ICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-DGVTAVISCVGGFG  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~-l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~vi~~ag~~~  133 (200)
                      ++|.|+|+ |.+|+. ....|.+. +.++.+++++++........-++.....|+   +   +++ .++|+|+-+.....
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~---~ll~~~iD~V~I~tp~~~   74 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDY---R---DVLQYGVDAVMIHAATDV   74 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSST---T---GGGGGCCSEEEECSCGGG
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccH---H---Hhcccccceecccccccc
Confidence            58999997 888865 45566555 346666655543311110001111111222   2   233 36899888765321


Q ss_pred             -----------C----CcccchhhHHHHHHHHHHHHHcCCC
Q 029008          134 -----------S----NSYMYKINGTANINAIRAASEKGVK  159 (200)
Q Consensus       134 -----------~----~~~~~~~n~~~~~~~~~~a~~~~~~  159 (200)
                                 .    -+..+..+......+.+++++.+..
T Consensus        75 H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          75 HSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence                       0    1233466778888889988888764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.15  Score=35.81  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=28.3

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      -++|+|| |..|...+.++.+.|.+|.++.+.
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCEEEEEecc
Confidence            3789998 999999999999999999999875

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.57  E-value=0.59  Score=31.86  Aligned_cols=71  Identities=18%  Similarity=0.125  Sum_probs=41.8

Q ss_pred             CCeEEEEccCchhHHH-HHHHHHHC-----CCcEEEeecCCCCccc---------ccCCCCeeEEEccCCCHHHHHHHhc
Q 029008           56 SEKLLVLGGNGFVGSH-ICREALDR-----GLTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALD  120 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~  120 (200)
                      ..+|.|+|| |.+|.. ++..++.+     +.++++++.++++...         ........+...     .+.+++++
T Consensus         3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal~   76 (167)
T d1u8xx1           3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFT   76 (167)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHS
T ss_pred             CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhccC
Confidence            458999998 555553 33444432     2378998887654210         001122232221     13567889


Q ss_pred             CCCEEEEccccC
Q 029008          121 GVTAVISCVGGF  132 (200)
Q Consensus       121 ~~d~vi~~ag~~  132 (200)
                      +.|+||..+|..
T Consensus        77 ~AD~Vvitag~~   88 (167)
T d1u8xx1          77 DVDFVMAHIRVG   88 (167)
T ss_dssp             SCSEEEECCCTT
T ss_pred             CCCEEEECCCcC
Confidence            999999999863

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=90.51  E-value=1.5  Score=30.01  Aligned_cols=92  Identities=15%  Similarity=0.253  Sum_probs=52.1

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC----CcEEEeecCCCCccc------------ccCCC--------------CeeEEE
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLR------------DSWAN--------------NVIWHQ  106 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~------------~~~~~--------------~~~~~~  106 (200)
                      ++|.|=|- |.||+.+.+.+++++    .+|+++.- ... .+            -.+..              .+.++ 
T Consensus         2 ikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd-~~~-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~-   77 (173)
T d1obfo1           2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAIND-LGD-PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVD-   77 (173)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEEC-SSC-HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEE-
T ss_pred             eEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcC-CCC-hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEE-
Confidence            47888885 999999999999754    24444332 111 10            00111              12222 


Q ss_pred             ccCCCHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                       .-.|++.+.-.--++|+|+-|.|.+...+            -++.-.+.|++++|...
T Consensus        78 -~~~~p~~i~W~~~gvDiViEcTG~f~~~~------------~a~~hl~~GakkViiSA  123 (173)
T d1obfo1          78 -ANRNPAQLPWGALKVDVVLECTGFFTTKE------------KAGAHIKGGAKKVIISA  123 (173)
T ss_dssp             -CCSCGGGSCTTTTTCSEEEECSSSCCSHH------------HHHHHHHHTCSEEEESS
T ss_pred             -ecCCHHHCcccccccceEEEecccccCHH------------HHHHHhccCCcceEEec
Confidence             22456655444447899999999764221            12222345888888754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=90.39  E-value=0.14  Score=39.16  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=28.3

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      -++|+|+ |.-|..++.+|.+.|++|.++-+-
T Consensus         9 dvIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGS-GYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5799997 999999999999999999999874

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.24  Score=33.39  Aligned_cols=94  Identities=13%  Similarity=-0.012  Sum_probs=53.6

Q ss_pred             CeEEEEccCchhHHH-HHHHHHHC-CCcEEEee-cCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccccCC
Q 029008           57 EKLLVLGGNGFVGSH-ICREALDR-GLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~-l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag~~~  133 (200)
                      ++|.|+|. |.+|.. ....+... +.+++++. ++.++.......-++.     ..  ++++.+.+++|+|+-+.....
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~-----~~--~~~~~l~~~~D~V~I~tp~~~   73 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP-----YA--DSLSSLAASCDAVFVHSSTAS   73 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC-----BC--SSHHHHHTTCSEEEECSCTTH
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccccc-----cc--ccchhhhhhcccccccccchh
Confidence            58999996 899975 45556554 56776554 4443321111111222     22  224555678999887754211


Q ss_pred             ----------C-----CcccchhhHHHHHHHHHHHHHcCC
Q 029008          134 ----------S-----NSYMYKINGTANINAIRAASEKGV  158 (200)
Q Consensus       134 ----------~-----~~~~~~~n~~~~~~~~~~a~~~~~  158 (200)
                                .     -+..+-.+..-...+++++++.+.
T Consensus        74 h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~  113 (164)
T d1tlta1          74 HFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKL  113 (164)
T ss_dssp             HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccccceeeccccccCCHHHHHHHHHHHHHcCC
Confidence                      0     123345667777778888887765

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.35  E-value=0.15  Score=37.53  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeec
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSR   88 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r   88 (200)
                      ..++++++|-|. |-+|.++++.|.+.|++|++++-
T Consensus        33 ~l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          33 TLVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             CSTTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEec
Confidence            467889999996 99999999999999999988753

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.05  E-value=0.15  Score=38.59  Aligned_cols=31  Identities=26%  Similarity=0.518  Sum_probs=28.2

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      -++|+|+ |.-|..++.+|++.|++|.++-+.
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCCeEEEEecC
Confidence            4789997 999999999999999999999764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.96  E-value=0.12  Score=35.76  Aligned_cols=94  Identities=17%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC-CCcEEEe-ecCCCCccc---c-cCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEc
Q 029008           57 EKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~---~-~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~  128 (200)
                      .++.|+|+ |.+|+..++.+... +.+|+++ +++.++...   . ..+....++       ++++++++  ++|+|+-+
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH-------GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEE-------SSHHHHHHCTTCCEEEEC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeec-------CcHHHhhhccccceeeec
Confidence            48999996 89999999998876 5577765 444332111   1 111222222       22455553  68999877


Q ss_pred             cccCC----------C-----CcccchhhHHHHHHHHHHHHHcCC
Q 029008          129 VGGFG----------S-----NSYMYKINGTANINAIRAASEKGV  158 (200)
Q Consensus       129 ag~~~----------~-----~~~~~~~n~~~~~~~~~~a~~~~~  158 (200)
                      .....          .     -+..+..+......+++.+++.+.
T Consensus        74 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~  118 (184)
T d1ydwa1          74 LPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV  118 (184)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred             ccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence            54321          0     123345677788888888887765

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.95  E-value=0.15  Score=37.85  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=29.8

Q ss_pred             CCeEEEEccCchhHH-----HHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGS-----HICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~-----~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      |++|.|.| -|++|+     +|+..|+++|++|.+++-+++
T Consensus         2 Mr~Iaisg-KGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYG-KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             ccEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            67888887 799998     478889999999999998754

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=89.81  E-value=0.55  Score=32.08  Aligned_cols=95  Identities=21%  Similarity=0.249  Sum_probs=56.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcc----------cccCC------CC------eeEEEccCCCHHH
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----------RDSWA------NN------VIWHQGNLLSSDS  114 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----------~~~~~------~~------~~~~~~Dl~d~~~  114 (200)
                      ++|.|=|- |.||+.+.+.|.+++.+|+++.-..+...          ...+.      .+      -.+....-.|++.
T Consensus         1 ikigINGf-GRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             CEEEEECC-cHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            47888886 99999999999999988887653211100          00000      01      1111122346666


Q ss_pred             HHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEE
Q 029008          115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYI  164 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~v  164 (200)
                      +.-.-.++|+|+-|.|.+...+            .++.-.+.|++++|..
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~------------~~~~hl~~gakkViiS  117 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDAD------------KAKAHLEGGAKKVIIT  117 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHH------------HHTHHHHTTCSEEEES
T ss_pred             CcccccCCceeEeccccccchH------------Hhhhhhccccceeeec
Confidence            5544457899999999764321            1223335688888874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=89.57  E-value=0.18  Score=37.79  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=29.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      --|+|+|+ |..|...+..|+++|++|+++.+.+
T Consensus        24 ~DVvVIG~-G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGS-GGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECS-SHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            35899997 9999999999999999999998764

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.43  E-value=1.2  Score=30.36  Aligned_cols=93  Identities=15%  Similarity=0.212  Sum_probs=52.6

Q ss_pred             eEEEEccCchhHHHHHHHHHHCC---CcEEEeecCCCCcc----------cccCC--------------CCeeEEEccCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSL----------RDSWA--------------NNVIWHQGNLL  110 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~----------~~~~~--------------~~~~~~~~Dl~  110 (200)
                      ||.|=|- |.||+.+.+.++++.   .+|+.+.-..+...          .-.+.              ..+.+.  .-.
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~--~~~   78 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVF--AEP   78 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEE--CCS
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEE--eCC
Confidence            6788885 999999999999753   46655532111000          00011              112222  234


Q ss_pred             CHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       111 d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                      +++++.---.++|+|+-|.|.+...+            -++.-.+.|++++|...
T Consensus        79 ~p~~i~W~~~gvD~ViEcTG~f~t~~------------~~~~hl~~GakkViiSA  121 (169)
T d1hdgo1          79 DPSKLPWKDLGVDFVIESTGVFRNRE------------KAELHLQAGAKKVIITA  121 (169)
T ss_dssp             SGGGSCHHHHTCCEEEECSSSCCBHH------------HHTHHHHTTCSEEEESS
T ss_pred             ChhhCCccccCCCEEEEecceecccc------------chhhhccCCCceEEEec
Confidence            56655433337999999999865321            12222356888888733

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.14  E-value=0.21  Score=34.95  Aligned_cols=32  Identities=22%  Similarity=0.473  Sum_probs=28.9

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -++|+|| |..|...+..+.+.|.+|.++.+..
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            4789998 9999999999999999999998754

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.99  E-value=0.55  Score=31.80  Aligned_cols=94  Identities=20%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC--CcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccc
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVG  130 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag  130 (200)
                      ...+|.|+|. |.+|+..++.|.+..  ..+.+++....+....  ......  .      +++++++  ++|+|+-+..
T Consensus         6 ~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~------~~~e~l~~~~iD~V~I~tp   74 (172)
T d1lc0a1           6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGS--LDEVRQ--I------SLEDALRSQEIDVAYICSE   74 (172)
T ss_dssp             CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCE--ETTEEB--C------CHHHHHHCSSEEEEEECSC
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccchHHHHH--hhccCc--C------CHHHHHhCCCcchhhhccc
Confidence            4558999997 999999888776542  2233333222221110  111211  1      2455554  5788887764


Q ss_pred             cCC-----------C----CcccchhhHHHHHHHHHHHHHcCCC
Q 029008          131 GFG-----------S----NSYMYKINGTANINAIRAASEKGVK  159 (200)
Q Consensus       131 ~~~-----------~----~~~~~~~n~~~~~~~~~~a~~~~~~  159 (200)
                      ...           .    -+..+-.|+.....+++.+++.+..
T Consensus        75 ~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          75 SSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             GGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             ccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            321           0    0233456788888889998888753

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.96  E-value=0.36  Score=33.35  Aligned_cols=68  Identities=21%  Similarity=0.215  Sum_probs=49.8

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHHHHHhcCCCEEEEccc
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .++|+|.|+|- |.-|.+=+.-|...|.+|++--|......+.....++++.        ++.++.+..|+|.....
T Consensus        14 ik~k~IaViGY-GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~--------~~~eA~~~aDiim~L~P   81 (182)
T d1np3a2          14 IQGKKVAIIGY-GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA--------DVKTAVAAADVVMILTP   81 (182)
T ss_dssp             HHTSCEEEECC-SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE--------CHHHHHHTCSEEEECSC
T ss_pred             HCCCEEEEEee-CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc--------cHHHHhhhcCeeeeecc
Confidence            35789999996 9999999999999999999988876543222223455543        35667778888877653

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=88.69  E-value=0.24  Score=38.12  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=23.5

Q ss_pred             CeEEEEcc------CchhH---HHHHHHHHHCCCcEEEeec
Q 029008           57 EKLLVLGG------NGFVG---SHICREALDRGLTVASLSR   88 (200)
Q Consensus        57 ~~ilVtGa------~G~iG---~~l~~~L~~~g~~V~~~~r   88 (200)
                      |||++++.      +|++|   ..|+++|.++||+|+++..
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp   41 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP   41 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence            45666553      36666   5679999999999999874

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.51  E-value=0.18  Score=34.79  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      +.+.|+|+|| |..|..-+..+.+.|.+|+++.+..
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEeec
Confidence            3468999998 9999999999999999999998654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.34  E-value=0.26  Score=34.06  Aligned_cols=34  Identities=15%  Similarity=0.084  Sum_probs=30.2

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      .++|+|+|| |..|...+..|.+.|.+|+++.+..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCCcEEEEEeec
Confidence            468999998 9999999999999999999997654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.99  E-value=0.24  Score=37.16  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=29.8

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      --|+|+|+ |..|...+.++.++|.+|+++.+..
T Consensus        20 ~DVvVIGa-G~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGA-GSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46999997 9999999999999999999998764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.74  E-value=0.32  Score=32.96  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=28.5

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -|+|+|| |..|...+..+.+.|.+|.++.++.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCCeEEEEEEec
Confidence            3789998 9999999999999999999998753

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.74  E-value=2.9  Score=28.41  Aligned_cols=97  Identities=16%  Similarity=0.149  Sum_probs=52.7

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC---CcEEEeecCCCCcc----------------c-ccCC------CCeeEEEccCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSL----------------R-DSWA------NNVIWHQGNLL  110 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~----------------~-~~~~------~~~~~~~~Dl~  110 (200)
                      ++|.|-|- |.||+.+.+.++++.   .+|+++.-..+.+.                . ....      .+-.+.-..-.
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~   79 (172)
T d1rm4a1           1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR   79 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence            47888885 999999999988764   34554432111000                0 0000      11111111234


Q ss_pred             CHHHHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEec
Q 029008          111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (200)
Q Consensus       111 d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vSS  166 (200)
                      |++++.-.-.++|+|+-|.|.+...+            -++.-.+.|++++|....
T Consensus        80 ~p~~i~W~~~gvDiViEcTG~f~~~~------------~~~~hl~~GakkViiSAP  123 (172)
T d1rm4a1          80 NPVNLPWGDMGIDLVIEGTGVFVDRD------------GAGKHLQAGAKKVLITAP  123 (172)
T ss_dssp             CGGGSCHHHHTCCEEEECSSSCCBHH------------HHHHHHHTTCSCEEESSC
T ss_pred             ChHHCChhhcCCCEEEecCceEccHH------------HHHHHHhcCCceEEeecc
Confidence            66655433347999999999864321            122223568888777543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.69  E-value=0.15  Score=34.83  Aligned_cols=70  Identities=14%  Similarity=-0.048  Sum_probs=41.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHC------CCcEEEeecCCCCcccc------cCCCCeeEEEccCCCHHHHHHHhcCCCE
Q 029008           57 EKLLVLGGNGFVGSHICREALDR------GLTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  124 (200)
                      +||.|+|| |.+|...+-..+.+      +.++.+++.++++....      .......+..   +  .+..+.++++|+
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~---t--~~~~~~l~~aDv   74 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---S--DTFEGAVVDAKY   74 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---C--SSHHHHHTTCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE---e--cCcccccCCCCE
Confidence            57999998 65776655332221      35899998876542110      0011222221   1  123567889999


Q ss_pred             EEEccccC
Q 029008          125 VISCVGGF  132 (200)
Q Consensus       125 vi~~ag~~  132 (200)
                      ||..+|..
T Consensus        75 VVita~~~   82 (162)
T d1up7a1          75 VIFQFRPG   82 (162)
T ss_dssp             EEECCCTT
T ss_pred             EEEecccC
Confidence            99999854

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.63  E-value=0.21  Score=35.39  Aligned_cols=73  Identities=15%  Similarity=0.066  Sum_probs=48.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC-------CcEEEeecCCCCc-----------cc----------ccCCCCeeEEEc-
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG-------LTVASLSRSGRSS-----------LR----------DSWANNVIWHQG-  107 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g-------~~V~~~~r~~~~~-----------~~----------~~~~~~~~~~~~-  107 (200)
                      .+|+|+|+ |--|...+.+|+++|       ++|++..+.+..-           ..          .....++++... 
T Consensus         3 ~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           3 YYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             cEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            58999997 999999999999998       4799988764210           00          111234554432 


Q ss_pred             cCCCHHHHHHHhcCCCEEEEccc
Q 029008          108 NLLSSDSWKEALDGVTAVISCVG  130 (200)
Q Consensus       108 Dl~d~~~~~~~~~~~d~vi~~ag  130 (200)
                      .+.....++.+..+.|.++.+.|
T Consensus        82 ~v~~~~~~~~~~~~~~~v~~atG  104 (239)
T d1lqta2          82 VVGEHVQPGELSERYDAVIYAVG  104 (239)
T ss_dssp             CBTTTBCHHHHHHHSSEEEECCC
T ss_pred             EeccccchhhhhccccceeeecC
Confidence            23333344555567888888776

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=0.29  Score=34.61  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=27.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCC--cEEEeecC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRS   89 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~--~V~~~~r~   89 (200)
                      ...++|+|| |+.|..++..|.+.|.  +|+++++.
T Consensus         4 ~~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           4 HVPFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            346789997 9999999999998876  58887764

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=87.48  E-value=2.1  Score=29.76  Aligned_cols=75  Identities=9%  Similarity=0.031  Sum_probs=46.4

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc------------cCCCCeeEEEccCCCHHHHHHHhc--
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------------SWANNVIWHQGNLLSSDSWKEALD--  120 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------------~~~~~~~~~~~Dl~d~~~~~~~~~--  120 (200)
                      ..|+|++.|. +..+..+.+.|.+.|++|.++...+++....            ....++.....+..+.+...+.++  
T Consensus         2 ~~mKI~f~G~-~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (206)
T d1fmta2           2 ESLRIIFAGT-PDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL   80 (206)
T ss_dssp             CCCEEEEEEC-SHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence            3578999985 7888999999999999987766443321100            001244555544444444555554  


Q ss_pred             CCCEEEEccc
Q 029008          121 GVTAVISCVG  130 (200)
Q Consensus       121 ~~d~vi~~ag  130 (200)
                      ++|+++.+..
T Consensus        81 ~~d~~v~~~~   90 (206)
T d1fmta2          81 QADVMVVVAY   90 (206)
T ss_dssp             TCSEEEEESC
T ss_pred             cceEEEeecc
Confidence            5788777654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.48  E-value=0.4  Score=33.64  Aligned_cols=32  Identities=25%  Similarity=0.521  Sum_probs=28.9

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -|+|+|+ |-.|...+.++.+.|.+|.++.++.
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            4789998 9999999999999999999998754

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=87.45  E-value=0.42  Score=35.51  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=22.9

Q ss_pred             CeEEEEcc-Cchh---HHHHHHHHHHCCCcEEEeecC
Q 029008           57 EKLLVLGG-NGFV---GSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        57 ~~ilVtGa-~G~i---G~~l~~~L~~~g~~V~~~~r~   89 (200)
                      |+|+|++| ||+-   ..+|+++|.++|++|..++..
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            57777764 3311   235889999999999887644

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.78  E-value=0.15  Score=34.24  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=26.6

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEE
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVAS   85 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~   85 (200)
                      ..+++++|+|| |++|..++..+.+.|.++..
T Consensus        27 ~~gkrVvVIGg-G~~g~d~a~~~~r~G~~~~~   57 (162)
T d1ps9a2          27 PVGNKVAIIGC-GGIGFDTAMYLSQPGESTSQ   57 (162)
T ss_dssp             CCCSEEEEECC-HHHHHHHHHHHTCCSSCGGG
T ss_pred             ccCCceEEEcC-chhHHHHHHHHHHcCCccce
Confidence            35789999998 99999999999999976443

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.74  E-value=0.34  Score=34.02  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=29.0

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      ..++|+|| |..|...+..+.+.|.+|.++.+.
T Consensus         6 ~DlvVIG~-GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGG-GPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899997 999999999999999999999764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.67  E-value=0.55  Score=34.01  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHH-CCCcEEEeecC
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRS   89 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~r~   89 (200)
                      +..+++|+|-|- |-+|.++++.|.+ .|.+|+.+.-.
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence            467899999997 9999999999986 48988877543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.53  E-value=0.37  Score=35.99  Aligned_cols=31  Identities=32%  Similarity=0.499  Sum_probs=28.3

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      |+|+|+ |.-|..-+-.++++|.+|+++....
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEecCC
Confidence            899997 9999999999999999999997654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=86.46  E-value=0.66  Score=31.69  Aligned_cols=96  Identities=11%  Similarity=0.015  Sum_probs=53.9

Q ss_pred             CeEEEEccCchhHHH-HHHHHHHCC--CcEEEee-cCCCCcccccCCCCeeEEEccCCCHHHHHHHhc--CCCEEEEccc
Q 029008           57 EKLLVLGGNGFVGSH-ICREALDRG--LTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVG  130 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~-l~~~L~~~g--~~V~~~~-r~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~ag  130 (200)
                      .++.|+|+ |.+|+. .+..+.+.+  .+++++. ++.++.......-+...+.      ++++++++  ++|+|+-+..
T Consensus         4 irigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~ell~~~~id~v~I~tp   76 (181)
T d1zh8a1           4 IRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF------DSYEELLESGLVDAVDLTLP   76 (181)
T ss_dssp             EEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE------SCHHHHHHSSCCSEEEECCC
T ss_pred             cEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee------eeeeccccccccceeecccc
Confidence            38899996 899986 466666644  3666554 4332211100001111121      22455554  5898887754


Q ss_pred             cCC-----------C----CcccchhhHHHHHHHHHHHHHcCCC
Q 029008          131 GFG-----------S----NSYMYKINGTANINAIRAASEKGVK  159 (200)
Q Consensus       131 ~~~-----------~----~~~~~~~n~~~~~~~~~~a~~~~~~  159 (200)
                      ...           .    -++.+-.|......+.+.+++.+..
T Consensus        77 ~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          77 VELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             GGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             ccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            321           0    0334456788888888888888754

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=86.32  E-value=3  Score=28.19  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=55.2

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCC-CcEEEeecCCCCcc----------cccCCCCe------------eEEEccCCCHH
Q 029008           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL----------RDSWANNV------------IWHQGNLLSSD  113 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~----------~~~~~~~~------------~~~~~Dl~d~~  113 (200)
                      ++|.|-|- |.||+.+.+.++++. .+|+++.-..+...          .-.+...+            .+....-.|++
T Consensus         2 ikigINGF-GRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~   80 (166)
T d1gado1           2 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA   80 (166)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChH
Confidence            47888886 999999999999885 46665543221100          00001111            11112234666


Q ss_pred             HHHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          114 SWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       114 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                      .+.---.++|+|+-|.|.+...+            -++.-.+.|++++|...
T Consensus        81 ~i~W~~~gvDiViEcTG~f~t~~------------~~~~hl~~gakkViiSa  120 (166)
T d1gado1          81 NLKWDEVGVDVVAEATGLFLTDE------------TARKHITAGAKKVVMTG  120 (166)
T ss_dssp             GGCHHHHTCSEEEECSSSCCSHH------------HHTHHHHTTCSEEEESS
T ss_pred             HCCccccCCCEEEEccccccCHH------------HHHHHhcCCCceEEeec
Confidence            65544447999999999865322            12223456888877643

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=86.29  E-value=0.17  Score=36.21  Aligned_cols=99  Identities=11%  Similarity=-0.005  Sum_probs=55.7

Q ss_pred             CCCeEEEEccCchhHH-HHHHHHHHC-CCcEEEe-ecCCCCccc--ccC-CCCeeEEEccCCCHHHHHHHhc--CCCEEE
Q 029008           55 PSEKLLVLGGNGFVGS-HICREALDR-GLTVASL-SRSGRSSLR--DSW-ANNVIWHQGNLLSSDSWKEALD--GVTAVI  126 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~-~l~~~L~~~-g~~V~~~-~r~~~~~~~--~~~-~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi  126 (200)
                      +.-+|.|+|+ |.+|. +++..+... +.+|+++ +++.++...  ... .....+.  ...|   ++++++  ++|+|+
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~--~~~d---~~ell~~~~iD~V~  105 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY--DYSN---FDKIAKDPKIDAVY  105 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEE--CSSS---GGGGGGCTTCCEEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccccccc--ccCc---hhhhcccccceeee
Confidence            3459999997 89996 566665554 5677755 444333111  000 1111111  1222   345554  589998


Q ss_pred             EccccCC-----------C----CcccchhhHHHHHHHHHHHHHcCCC
Q 029008          127 SCVGGFG-----------S----NSYMYKINGTANINAIRAASEKGVK  159 (200)
Q Consensus       127 ~~ag~~~-----------~----~~~~~~~n~~~~~~~~~~a~~~~~~  159 (200)
                      -+.....           .    -++.+..|......+.+.+++.++.
T Consensus       106 I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~  153 (221)
T d1h6da1         106 IILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  153 (221)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             eccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCc
Confidence            7765321           0    1233456888888899999888653

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.28  E-value=2.7  Score=29.00  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRG   80 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g   80 (200)
                      |.++|.|=|- |.||+.+.+.+++++
T Consensus         1 M~ikigINGF-GRIGR~vlR~~~~~~   25 (190)
T d1k3ta1           1 MPIKVGINGF-GRIGRMVFQALCEDG   25 (190)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECC-ChHHHHHHHHHHHcC
Confidence            4568999996 999999999999875

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.16  E-value=0.51  Score=33.06  Aligned_cols=38  Identities=13%  Similarity=0.226  Sum_probs=33.4

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~   92 (200)
                      ..+|+|+|+|+ |.-|.-++..+.+.+.+++.+.|....
T Consensus        30 ~~gK~V~VvG~-G~Sa~dia~~~~~~~~~~~~~~~~~~~   67 (235)
T d1w4xa2          30 FSGQRVGVIGT-GSSGIQVSPQIAKQAAELFVFQRTPHF   67 (235)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCEEEEECC-CccHHHHHHHHHhhhccccccccccce
Confidence            57899999997 899999999999999999888887543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=85.90  E-value=1.4  Score=30.05  Aligned_cols=95  Identities=18%  Similarity=0.211  Sum_probs=55.1

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCC-cc----------cccCCCCe------------eEEEccCCCHHH
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS-SL----------RDSWANNV------------IWHQGNLLSSDS  114 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~----------~~~~~~~~------------~~~~~Dl~d~~~  114 (200)
                      ||.|-|- |.||+.+.+.+++++.+|+.+.-.... ..          .-.+...+            .+....-.++++
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            6788885 999999999999999888776532111 00          00011111            111122346665


Q ss_pred             HHHHhcCCCEEEEccccCCCCcccchhhHHHHHHHHHHHHHcCCCEEEEEe
Q 029008          115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (200)
Q Consensus       115 ~~~~~~~~d~vi~~ag~~~~~~~~~~~n~~~~~~~~~~a~~~~~~~~v~vS  165 (200)
                      +.-.-.++|+|+-|.|.+...+.            ++.-.+.|++++|...
T Consensus        81 i~W~~~gvD~ViEcTG~f~~~~~------------~~~hl~~gakkViisa  119 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVFTTIEK------------ASAHFKGGAKKVIISA  119 (169)
T ss_dssp             CCHHHHTCCEEEECSSSCCSHHH------------HGGGGTTTCSEEEESS
T ss_pred             CCccccCCCEEEecCceEcCHHH------------HHHHHhcCCceEeecC
Confidence            54444479999999998653211            1111244888877643

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=85.81  E-value=0.42  Score=36.54  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=28.3

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -++|+|+ |.-|.-++.+|.+.|.+|.++-+-.
T Consensus         4 D~IIVGs-G~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGA-GPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHhhCCCeEEEEEccC
Confidence            3689997 8999999999999999999998764

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=85.68  E-value=1.8  Score=27.17  Aligned_cols=34  Identities=15%  Similarity=0.264  Sum_probs=28.7

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      +|+|||.--.-.+...+...|.+.|++|.....+
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~   34 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATN   34 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECC
Confidence            5799999988999999999999999998755443

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.67  E-value=0.57  Score=32.63  Aligned_cols=31  Identities=32%  Similarity=0.434  Sum_probs=27.9

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      ++|+|| |..|...+.++.+.|.+|.++.+..
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            688997 9999999999999999999997643

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.14  E-value=0.62  Score=32.32  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=28.6

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -++|+|| |..|...+..+.+.|.+|.++.+..
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCEEEEEecCC
Confidence            4789997 9999999999999999999998754

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.81  E-value=1.1  Score=31.57  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=31.3

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHH--------------------HCCC-cEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREAL--------------------DRGL-TVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~--------------------~~g~-~V~~~~r~~~~   92 (200)
                      ..+++|+|+|+ |.++.-+++-|+                    +.|. +|+++.|+...
T Consensus        37 ~~gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          37 LSGARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             ccCceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            45789999997 999999999887                    4565 79999988554

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.39  E-value=0.86  Score=27.69  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=26.6

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeec
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSR   88 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r   88 (200)
                      |||||+|. |+=-.+|+..|.+...++++.--
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~~v~~~pG   31 (90)
T d1vkza2           1 VRVHILGS-GGREHAIGWAFAKQGYEVHFYPG   31 (90)
T ss_dssp             CEEEEEEC-SHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCeEEEecC
Confidence            68999996 77888999999999999988743

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=83.86  E-value=0.79  Score=32.23  Aligned_cols=32  Identities=41%  Similarity=0.521  Sum_probs=28.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -++|+|| |-.|...+.++.+.|.+|.++.+.+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            3789997 9999999999999999999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.36  E-value=1.3  Score=31.34  Aligned_cols=38  Identities=26%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CCCCeEEEEccCchhHHHHHHHHHHC--------------------C-CcEEEeecCCCC
Q 029008           54 PPSEKLLVLGGNGFVGSHICREALDR--------------------G-LTVASLSRSGRS   92 (200)
Q Consensus        54 ~~~~~ilVtGa~G~iG~~l~~~L~~~--------------------g-~~V~~~~r~~~~   92 (200)
                      ..+++|+|+|+ |.++.-+++.|++.                    | .+|+++.|+...
T Consensus        37 ~~gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          37 LSCDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             TTSSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             ccCceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            45789999997 99999999999973                    5 489999988654

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=83.19  E-value=4  Score=27.61  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=22.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCC-CcEEEee
Q 029008           58 KLLVLGGNGFVGSHICREALDRG-LTVASLS   87 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g-~~V~~~~   87 (200)
                      +|.|-|- |.||+.+.+.++++. .+|+++.
T Consensus         3 kIgINGf-GRIGR~v~R~~l~~~~~~ivaIN   32 (171)
T d3cmco1           3 KVGINGF-GRIGRNVFRAALKNPDIEVVAVN   32 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             EEEEECC-CHHHHHHHHHHhhCCCcEEEEEc
Confidence            6788886 999999999999874 4555553

>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.67  E-value=1.3  Score=31.13  Aligned_cols=77  Identities=10%  Similarity=0.164  Sum_probs=47.2

Q ss_pred             CCCeEEEEccCchhHHH-HHHHH---HHCC-----CcEEEeecCCCCccc----------c---------cCCCCeeEEE
Q 029008           55 PSEKLLVLGGNGFVGSH-ICREA---LDRG-----LTVASLSRSGRSSLR----------D---------SWANNVIWHQ  106 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~-l~~~L---~~~g-----~~V~~~~r~~~~~~~----------~---------~~~~~~~~~~  106 (200)
                      ..-+++|.||||.+-.. |...|   ...|     .+|+++.|++-...+          .         .....+.++.
T Consensus        19 ~~~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y~~   98 (203)
T d1qkia1          19 DTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVA   98 (203)
T ss_dssp             CCEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHHHTTEECCB
T ss_pred             CCcEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHHHHhhcccc
Confidence            44589999999999874 33332   3333     578999987633110          0         0124677888


Q ss_pred             ccCCCHHHHHHHhc---------CCCEEEEcccc
Q 029008          107 GNLLSSDSWKEALD---------GVTAVISCVGG  131 (200)
Q Consensus       107 ~Dl~d~~~~~~~~~---------~~d~vi~~ag~  131 (200)
                      +|++|++++.++-+         ..+.|++.|-+
T Consensus        99 ~d~~~~~~~~~L~~~l~~~~~~~~~~rifYLAvp  132 (203)
T d1qkia1          99 GQYDDAASYQRLNSHMNALHLGSQANRLFYLALP  132 (203)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTTTTTSEEEEEECSC
T ss_pred             CcCCChhhHHHHHHHHHHHhcCCCcceEEEEecC
Confidence            88888887765422         23466666543

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.60  E-value=0.92  Score=32.64  Aligned_cols=35  Identities=26%  Similarity=0.262  Sum_probs=29.4

Q ss_pred             CCCCCeEEEEccCchhHHHHHHHHHH-CCCcEEEeec
Q 029008           53 PPPSEKLLVLGGNGFVGSHICREALD-RGLTVASLSR   88 (200)
Q Consensus        53 ~~~~~~ilVtGa~G~iG~~l~~~L~~-~g~~V~~~~r   88 (200)
                      ...+++++|-|. |-+|.++++.|.+ .|.+|+.++-
T Consensus        28 ~l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          28 DPKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeec
Confidence            357889999985 9999999999975 5999987763

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=0.94  Score=29.09  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=32.2

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .+|+|+|.|+ |.-+..-+..|.+-+-+|+++.|+.+
T Consensus        26 ~~k~V~VvGg-GdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          26 RNQKVAVIGG-GNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TTSEEEEECS-SHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            6789999998 89999999999998889999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.33  E-value=0.043  Score=39.60  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=31.5

Q ss_pred             CCCeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        55 ~~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      ..++++|+|| |++|..++..|.+.|.+|+++.|++.
T Consensus       179 ~~~~vvViGg-G~~g~e~A~~l~~~g~~Vtli~r~~~  214 (233)
T d1djqa3         179 AEAPRLIADA-TFTGHRVAREIEEANPQIAIPYKRET  214 (233)
T ss_dssp             GTSCCCHHHH-HHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred             cCCceeEecC-chHHHHHHHHHHhcCCceEEEEeccc
Confidence            3568899997 99999999999999999999888754

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.30  E-value=0.7  Score=36.37  Aligned_cols=23  Identities=13%  Similarity=0.128  Sum_probs=19.0

Q ss_pred             CchhH---HHHHHHHHHCCCcEEEee
Q 029008           65 NGFVG---SHICREALDRGLTVASLS   87 (200)
Q Consensus        65 ~G~iG---~~l~~~L~~~g~~V~~~~   87 (200)
                      +|++|   .+|+++|.++||+|.++.
T Consensus        16 ~GGl~~vv~~La~~L~~~Gh~V~Vi~   41 (477)
T d1rzua_          16 TGGLADVVGALPIALEAHGVRTRTLI   41 (477)
T ss_dssp             SSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence            47777   567999999999999984

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

Probab=82.20  E-value=1.1  Score=31.64  Aligned_cols=73  Identities=16%  Similarity=0.004  Sum_probs=44.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccccCCCCeeEEEccCCCHHHH-HHHhcCCCEEEEccccCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW-KEALDGVTAVISCVGGFG  133 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~d~~~~-~~~~~~~d~vi~~ag~~~  133 (200)
                      --+|+||.+++=.++++...+.|-+|+.+......... ..+...+.+..+  +-..- ..+++..|++|-..|...
T Consensus        66 ~~lv~GGg~GlMgava~ga~~~gG~viGi~~~~~~~~~-~~~~~~~~i~~~--~~~~Rk~~m~~~sDafI~lPGG~G  139 (208)
T d1weka_          66 FGVVTGGGPGVMEAVNRGAYEAGGVSVGLNIELPHEQK-PNPYQTHALSLR--YFFVRKVLFVRYAVGFVFLPGGFG  139 (208)
T ss_dssp             CEEEECSCSHHHHHHHHHHHHTTCCEEEEEECCTTCCC-CCSCCSEEEEES--CHHHHHHHHHHTEEEEEECSCCHH
T ss_pred             ceEEeCCCchHHHHHHhhhhhcCCceeccccccccccc-cccccceEEecc--cHHHHHHHHHhCCCceEEecCcch
Confidence            56899998888888999999999899887544222111 111112222222  22222 235567899999988643

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.93  E-value=1.1  Score=31.40  Aligned_cols=73  Identities=12%  Similarity=0.075  Sum_probs=44.9

Q ss_pred             CeEEEEccCchhHHHHHHHHHHCCCcEEEeecCCCCcccc------cCCCCeeEEE------ccCCCHHHHHHHhc-CCC
Q 029008           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQ------GNLLSSDSWKEALD-GVT  123 (200)
Q Consensus        57 ~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~~~~~~~~~~------~Dl~d~~~~~~~~~-~~d  123 (200)
                      |||++.|. +..|..+.+.|.++|++|.++...+++....      ....++.++.      -+..+++.++.+-+ ++|
T Consensus         1 MkI~~~G~-~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~D   79 (203)
T d2bw0a2           1 MKIAVIGQ-SLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAE   79 (203)
T ss_dssp             CEEEEECC-HHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCC
Confidence            57888985 7899999999999999998776543321110      0011233332      23344555554433 589


Q ss_pred             EEEEccc
Q 029008          124 AVISCVG  130 (200)
Q Consensus       124 ~vi~~ag  130 (200)
                      ++|....
T Consensus        80 liv~~~~   86 (203)
T d2bw0a2          80 LNVLPFC   86 (203)
T ss_dssp             EEEESSC
T ss_pred             ceEEeec
Confidence            8888653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.85  E-value=0.95  Score=32.54  Aligned_cols=30  Identities=37%  Similarity=0.526  Sum_probs=27.7

Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeecC
Q 029008           59 LLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (200)
Q Consensus        59 ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~   89 (200)
                      ++|+|| |.-|...+.++++.|.+|.++.+.
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCeEEEEecC
Confidence            689997 999999999999999999999875

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=81.73  E-value=1.8  Score=29.84  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=25.3

Q ss_pred             CCeEEEEccCchhHHHHHHHHHHCCCcEEEeec
Q 029008           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSR   88 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r   88 (200)
                      .|+++|.|| |+.|+.+...+.+.++++.+..-
T Consensus         2 ~kkl~i~Ga-gg~~~~v~di~~~~~~~~~~f~d   33 (193)
T d3bswa1           2 TEKIYIYGA-SGHGLVCEDVAKNMGYKECIFLD   33 (193)
T ss_dssp             CSEEEEEC---CHHHHHHHHHHHHTCCEEEECC
T ss_pred             CCEEEEEcC-CHhHHHHHHHHHhCCCcEEEEEc
Confidence            579999998 77899999999999998877543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.67  E-value=0.88  Score=35.05  Aligned_cols=34  Identities=15%  Similarity=0.338  Sum_probs=30.0

Q ss_pred             eEEEEccCchhHHHHHHHHHH------CCCcEEEeecCCCC
Q 029008           58 KLLVLGGNGFVGSHICREALD------RGLTVASLSRSGRS   92 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~------~g~~V~~~~r~~~~   92 (200)
                      -|+|+|| |--|...+..|++      +|.+|.++.+....
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            6899998 9999999999987      89999999987543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=81.66  E-value=0.98  Score=32.52  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=29.0

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      .++|+|+ |..|...+..+.+.|.+|.++.+.+
T Consensus        44 DvvVIGg-G~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGG-GAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            5899997 9999999999999999999998754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.61  E-value=0.82  Score=33.30  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=27.0

Q ss_pred             CCeEEEEccCchhHH-----HHHHHHHHCCCcEEEeecCCC
Q 029008           56 SEKLLVLGGNGFVGS-----HICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        56 ~~~ilVtGa~G~iG~-----~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      .+.|+++ |-|++|+     +++..|+++|.+|.+++-++.
T Consensus         8 p~~i~~s-GKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           8 PPYLFFT-GKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             CSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CeEEEEE-CCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3445554 4799998     478889999999999998753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.59  E-value=0.85  Score=31.56  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -++|+|| |--|...+.++.+.|.+|.++.+..
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCeEEEEeccc
Confidence            4789997 9999999999999999999998764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.43  E-value=0.83  Score=32.09  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=29.0

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      -++|+|| |-.|...+.++.+.|.+|.++.+.+.
T Consensus         5 DviVIG~-GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           5 DLIIIGG-GSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            3789997 99999999999999999999986543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.87  E-value=0.77  Score=30.51  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=26.0

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~~   91 (200)
                      ||.++|- |.+|..+++.|++.|+.+ +..|..+
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~   33 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFE   33 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSCEE-EECSSTH
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHH
Confidence            6889996 999999999999988865 4455543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=80.37  E-value=0.7  Score=34.62  Aligned_cols=32  Identities=28%  Similarity=0.306  Sum_probs=28.8

Q ss_pred             eEEEEccCchhHHHHHHHHHHCCCcEEEeecCC
Q 029008           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (200)
Q Consensus        58 ~ilVtGa~G~iG~~l~~~L~~~g~~V~~~~r~~   90 (200)
                      -|+|+|+ |.-|...+.++.++|.+|+++.+..
T Consensus         9 DVlVVG~-G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGA-GGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECC-SHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            4899997 9999999999999999999998754