Citrus Sinensis ID: 029018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE
Secondary Structure (PSIPRED)
cccccccccHHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHccccccEEcEEEcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccEEEEEEccccccEHHEcHHHcccHHHHHHHHHHHHcccEccccccccccccccHHHHHHHccccccEcEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
meaiglkmdfketelclglpgggnnkkdeaaaleltptpkasnkrgfCETAVIDLKLNLqskessvdlnenfknppsnnknhdkdpakpsankaqvvgwppvrsyrKNAMAETAAFVKVCmdgapylrkvdlKTYKSYQELSDALAKMFSSftmgnygsqgmidFMNESKLMDllnssdyvptyedkdgdwmlvgdvpwe
Flexible Loop (DISEMBL)
meaiglkmdfkeTELCLGLPGGGNNKKDEAAALEltptpkasnkrgFCETAVIDLKLNLQSKESSVDLNEnfknppsnnknhdkdpakpsankaqvvgwpPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYvptyedkdgdwMLVGDVPWE
Low Complexity Region (SEG)
MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE
Disordered region (IsUnstruct)
**************LCLG***************************GFCETAVIDLKL**************************************VVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDV***
Disordered Region (DISOPRED)
*****LKMDFKETELCLGL**********************************************************************************************AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGN********************SSDYVPTYEDKDGDWMLVGDVPW*
Disordered Region (DISEMBL)
MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPS*****************QVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE
Disordered Region (DISPRO)
******KMDFKETELCLGLPG**********************************************************************NKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q38832	228	Auxin-responsive protein	yes	no	0.895	0.785	0.649	6e-65
Q38825	243	Auxin-responsive protein	no	no	0.925	0.761	0.638	3e-64
P93830	229	Auxin-responsive protein	no	no	0.895	0.781	0.589	2e-57
P13089	243	Auxin-induced protein AUX	no	no	0.9	0.740	0.567	1e-55
O24407	236	Auxin-responsive protein	no	no	0.85	0.720	0.561	2e-54
P0C132	277	Auxin-responsive protein	yes	no	0.925	0.667	0.506	5e-47
Q75GK0	233	Auxin-responsive protein	no	no	0.87	0.746	0.502	6e-43
Q9ZSY8	305	Auxin-responsive protein	no	no	0.965	0.632	0.440	8e-42
Q38827	338	Auxin-responsive protein	no	no	0.965	0.571	0.434	1e-40
Q38826	321	Auxin-responsive protein	no	no	0.925	0.576	0.425	1e-39

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  246 bits (629), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 148/208 (71%), Gaps = 29/208 (13%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQS-KESSV 66
           M+ KETELCLGLPGG          +E        NKRGF ET  +DLKLNLQS K+  V
Sbjct: 1   MNLKETELCLGLPGG-------TETVESPAKSGVGNKRGFSET--VDLKLNLQSNKQGHV 51

Query: 67  DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE-------------- 112
           DLN N        K   KDP+KP A KAQVVGWPPVR+YRKN MA               
Sbjct: 52  DLNTN---GAPKEKTFLKDPSKPPA-KAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGG 107

Query: 113 -TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKL 171
            T AFVKV MDGAPYLRKVDLK Y SY++LSDALAKMFSSFTMG+YG+QGMIDFMNESK+
Sbjct: 108 GTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKV 167

Query: 172 MDLLNSSDYVPTYEDKDGDWMLVGDVPW 199
           MDLLNSS+YVP+YEDKDGDWMLVGDVPW
Sbjct: 168 MDLLNSSEYVPSYEDKDGDWMLVGDVPW 195

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/221 (63%), Positives = 154/221 (69%), Gaps = 36/221 (16%)

Query: 4   IGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQS-K 62
           IG  M+ K TELCLGLPGG       A A+E        +KRGF ET  +DL LNLQS K
Sbjct: 2   IGQLMNLKATELCLGLPGG-------AEAVESPAKSAVGSKRGFSET--VDLMLNLQSNK 52

Query: 63  ESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAM--------AETA 114
           E SVDL +N    P   K   KDP+KP A KAQVVGWPPVR+YRKN M        AE A
Sbjct: 53  EGSVDL-KNVSAVP-KEKTTLKDPSKPPA-KAQVVGWPPVRNYRKNMMTQQKTSSGAEEA 109

Query: 115 A---------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGS 159
           +                VKV MDGAPYLRKVDLK YKSYQ+LSDALAKMFSSFTMGNYG+
Sbjct: 110 SSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGA 169

Query: 160 QGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           QGMIDFMNESKLM+LLNSS+YVP+YEDKDGDWMLVGDVPWE
Sbjct: 170 QGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 144/207 (69%), Gaps = 28/207 (13%)

Query: 6   LKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESS 65
           ++++ +ETELCLGLPGG             T  P   NKRGF ET  +DLKLNL ++ ++
Sbjct: 5   VELNLRETELCLGLPGGD------------TVAPVTGNKRGFSET--VDLKLNLNNEPAN 50

Query: 66  VDLNENFKNPPSNNKNHD---KDPAKPSANKAQVVGWPPVRSYRKNAMA---------ET 113
            + +        ++K      KDPAKP A KAQVVGWPPVRSYRKN M          E 
Sbjct: 51  KEGSTTHDVVTFDSKEKSACPKDPAKPPA-KAQVVGWPPVRSYRKNVMVSCQKSSGGPEA 109

Query: 114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQ-GMIDFMNESKLM 172
           AAFVKV MDGAPYLRK+DL+ YKSY ELS+AL+ MFSSFTMG +G + GMIDFMNE KLM
Sbjct: 110 AAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLM 169

Query: 173 DLLNSSDYVPTYEDKDGDWMLVGDVPW 199
           DL+NS DYVP+YEDKDGDWMLVGDVPW
Sbjct: 170 DLVNSWDYVPSYEDKDGDWMLVGDVPW 196

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  216 bits (549), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/222 (56%), Positives = 138/222 (62%), Gaps = 42/222 (18%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCET---------AVIDLKLN 58
           M F+ETEL LGLPG G  ++                KRGF ET           +DL LN
Sbjct: 1   MGFEETELRLGLPGNGGTEE------------VLIRKRGFSETETGHEDESATTVDLMLN 48

Query: 59  LQSKESSV------DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMA- 111
           L SKE++       D  +  K  P        DPAKP A K QVVGWPPVRS+RKN +A 
Sbjct: 49  LSSKEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPA-KTQVVGWPPVRSFRKNMLAV 107

Query: 112 -------------ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYG 158
                          A+FVKV MDGAPYLRKVDLK YKSY+ELSD+L KMFSSFT GN  
Sbjct: 108 QKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCE 167

Query: 159 SQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           SQGM DFMNESKL DLLNSSDYVPTYEDKDGDWMLVGDVPWE
Sbjct: 168 SQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWE 209

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/226 (56%), Positives = 143/226 (63%), Gaps = 56/226 (24%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKE---- 63
           ++F+ TEL LGLPGG  N   E A        K + KRGF ET  +DLKLNL S      
Sbjct: 2   INFEATELRLGLPGG--NHGGEMAG-------KNNGKRGFSET--VDLKLNLSSTAMDSV 50

Query: 64  SSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMA------------ 111
           S VDL EN K          +   KP A KAQVVGWPPVRS+RKN M+            
Sbjct: 51  SKVDL-ENMK----------EKVVKPPA-KAQVVGWPPVRSFRKNVMSGQKPTTGDATEG 98

Query: 112 -----------------ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTM 154
                             T A+VKV MDGAPYLRK+DLK YK+YQ+LS+AL+KMFSSFT+
Sbjct: 99  NDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTI 158

Query: 155 GNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           GNYG QGM DFMNESKL+DLLN SDYVPTYEDKDGDWMLVGDVPWE
Sbjct: 159 GNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 204

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  187 bits (474), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/249 (50%), Positives = 140/249 (56%), Gaps = 64/249 (25%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQ------- 60
           + F+ TEL LGLPGGG +    AAA        +S KRGF ET  IDLKL L+       
Sbjct: 5   LAFEATELRLGLPGGGGDGDAAAAAAR-----SSSGKRGFAET--IDLKLKLEPAAAAVD 57

Query: 61  -----------SKESSVDL---------------NENFKNPPSNNK--NHDKDPAKPSAN 92
                       +E  VD+                   K  PS +       DP KP A 
Sbjct: 58  DDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKPRAP 117

Query: 93  KAQVVGWPPVRSYRKNAMAETA---------------------AFVKVCMDGAPYLRKVD 131
           KAQVVGWPPVRSYRKN +A  A                     AFVKV MDGAPYLRKVD
Sbjct: 118 KAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVD 177

Query: 132 LKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDW 191
           LK YKSY ELS AL KMFSSFT+GN GS G ++ MNESK+ DLLN S+YVPTYEDKDGDW
Sbjct: 178 LKMYKSYLELSKALEKMFSSFTIGNCGSHG-VNGMNESKIADLLNGSEYVPTYEDKDGDW 236

Query: 192 MLVGDVPWE 200
           MLVGDVPWE
Sbjct: 237 MLVGDVPWE 245

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75GK0|IAA11_ORYSJ Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/219 (50%), Positives = 125/219 (57%), Gaps = 45/219 (20%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           + F ETEL LGLPG G     E AA       ++S KRGF ET  IDLKL LQ    +  
Sbjct: 4   LGFDETELRLGLPGAG-----ELAA-------RSSGKRGFAET--IDLKLKLQPAAPAAV 49

Query: 68  LNE---------------------NFKNPPSNNK--NHDKDPAKPSANKAQVVGWPPVRS 104
             E                     + K   S +     + DP KP A KAQVVGWPPVRS
Sbjct: 50  SGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRS 109

Query: 105 YRKNAMAE---TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQG 161
           +RKN +AE    AA VKV MDGAPYLRK+D+  YKSY ELS A   MF+SFT+G  GS  
Sbjct: 110 FRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQ 169

Query: 162 MIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
            +   N  KL D L   +YVPTYEDKDGDWMLVGDVPWE
Sbjct: 170 QLKESN--KLRDDL---EYVPTYEDKDGDWMLVGDVPWE 203

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  169 bits (429), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 131/236 (55%), Gaps = 43/236 (18%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALEL--TPTPKASNKRGFCE---------------T 50
           ++FK TEL LGLPG  + ++ ++  L L  +  P +  KR F +               T
Sbjct: 38  LNFKATELRLGLPGSESPERVDSRFLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGSTT 97

Query: 51  AVIDLKLNLQSKESSV-DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNA 109
           A  D+      + S V D        P+      K  A   A+KAQVVGWPP+RS+RKN+
Sbjct: 98  ATGDVGSGSGPRTSVVKDGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNS 157

Query: 110 MAETAA-----------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALA 146
           MA + +                       +VKV M+GAPYLRK+DLKTYKSY ELS AL 
Sbjct: 158 MASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALE 217

Query: 147 KMFSSFTMGNYGSQGMI--DFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           KMFS FT+G +GS G    D +NES+L DLL  S+YV TYEDKD DWMLVGDVPWE
Sbjct: 218 KMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/244 (43%), Positives = 134/244 (54%), Gaps = 51/244 (20%)

Query: 8   MDFKETELCLGLPGGGN------------NKKDEAAALELTPTP-----------KASNK 44
           +  K TEL LGLPG  +             K DE     L P+             + NK
Sbjct: 61  ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNK 120

Query: 45  RGFCET--AVIDLKLNLQSKES----------SVDLNENFKNPPSNNKNHDKDPAKPSAN 92
           RGF +T     + K ++ ++++          SV   +  +N P    +   + + P A 
Sbjct: 121 RGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPAA 180

Query: 93  KAQVVGWPPVRSYRKNAMAET--------------AAFVKVCMDGAPYLRKVDLKTYKSY 138
           KAQ+VGWPPVRSYRKN +A T              A FVKV MDGAPYLRKVDL++Y +Y
Sbjct: 181 KAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNY 240

Query: 139 QELSDALAKMFSSFTMGNYGSQGMI--DFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD 196
            ELS AL KMF++FT+G  GS G    D ++E+KL DLLN  DYV TYEDKDGDWMLVGD
Sbjct: 241 GELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGD 300

Query: 197 VPWE 200
           VPWE
Sbjct: 301 VPWE 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/249 (42%), Positives = 135/249 (54%), Gaps = 64/249 (25%)

Query: 8   MDFKETELCLGLPGGGNNKK------------DEAAALELTPTPK------------ASN 43
           ++FK TEL LGLP   + ++            DE     L P+              + N
Sbjct: 47  LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGN 106

Query: 44  KRGFCET--------------AVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKP 89
           KRGF +T                I++ L+ + K+ S  + E   +      N       P
Sbjct: 107 KRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNN------AP 160

Query: 90  SANKAQVVGWPPVRSYRKNAMAETAA---------------FVKVCMDGAPYLRKVDLKT 134
           +A KAQVVGWPP+RSYRKN MA + +               FVKV MDGAPYLRKVDL+T
Sbjct: 161 AA-KAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRT 219

Query: 135 YKSYQELSDALAKMFSSFTMGN---YGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDW 191
           Y SYQ+LS AL KMFS FT+G    +G+QG  + M+E KL DLL+ S++V TYEDKDGDW
Sbjct: 220 YTSYQQLSSALEKMFSCFTLGQCGLHGAQGR-ERMSEIKLKDLLHGSEFVLTYEDKDGDW 278

Query: 192 MLVGDVPWE 200
           MLVGDVPWE
Sbjct: 279 MLVGDVPWE 287

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
224099883	248	predicted protein [Populus trichocarpa]	0.915	0.737	0.696	4e-74
429326554	248	hypothetical protein [Populus tomentosa]	0.92	0.741	0.685	6e-73
332167937	249	auxin-responsive protein [Gossypium hirs	0.915	0.734	0.696	7e-71
358248890	239	auxin-induced protein ali50 [Glycine max	0.895	0.748	0.679	9e-71
224111068	277	predicted protein [Populus trichocarpa]	0.92	0.664	0.614	2e-70
302398581	244	ARF domain class transcription factor [M	0.935	0.766	0.671	3e-70
406368278	231	auxin repressor, partial [Fragaria x ana	0.91	0.787	0.693	9e-70
221271520	243	indole-3-acetic acid 14 transcription fa	0.935	0.769	0.665	2e-69
20269059	277	aux/IAA protein [Populus tremula x Popul	0.92	0.664	0.601	2e-68
225432892	243	PREDICTED: auxin-responsive protein IAA1	0.8	0.658	0.779	1e-67

>gi|224099883|ref|XP_002311658.1| predicted protein [Populus trichocarpa] gi|118487775|gb|ABK95711.1| unknown [Populus trichocarpa] gi|222851478|gb|EEE89025.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/214 (69%), Positives = 164/214 (76%), Gaps = 31/214 (14%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTP-KASNKRGFCETAVIDLKLNLQSKESSV 66
           +++KETELCLGLPG    K +         TP KA+ KRGF ET  +DLKLNLQ+KE  +
Sbjct: 13  LNYKETELCLGLPGAVGAKNE-------VETPNKATGKRGFAET--VDLKLNLQAKEGVM 63

Query: 67  DLNENFKNPPSNNKNH-----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE--------- 112
           DLNEN KN  S +KNH      KDPAKP A KAQVVGWPPVRSYRKN MA+         
Sbjct: 64  DLNENIKNITSKDKNHLPAVTIKDPAKPPA-KAQVVGWPPVRSYRKNVMAQKNASEEGEK 122

Query: 113 ------TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFM 166
                 +AAFVKVCMDGAPYLRKVDLK Y+SYQELSDALAKMFSSFTMGNYG+QGMIDFM
Sbjct: 123 ASTGGSSAAFVKVCMDGAPYLRKVDLKMYRSYQELSDALAKMFSSFTMGNYGAQGMIDFM 182

Query: 167 NESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           NESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPWE
Sbjct: 183 NESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWE 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326554|gb|AFZ78617.1| hypothetical protein [Populus tomentosa]

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 146/213 (68%), Positives = 163/213 (76%), Gaps = 29/213 (13%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           +++KETELCLGLPG    K       E+    KA+ KRGF ET  +DLKLNLQ+K+  +D
Sbjct: 13  LNYKETELCLGLPGAVGVKN------EVETPNKATGKRGFAET--VDLKLNLQAKDGVMD 64

Query: 68  LNENFKNPPSNNKNH-----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE---------- 112
           LN+N KN  S +KNH      KDPAKP A KAQVVGWPPVRSYRKN MA+          
Sbjct: 65  LNDNIKNITSKDKNHLPAAAIKDPAKPPA-KAQVVGWPPVRSYRKNVMAQKNASEEGEKT 123

Query: 113 -----TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMN 167
                +AAFVKVCMDGAPYLRKVDLK Y+SYQELSDALAKMFSSFTMGNYG+QGMIDFMN
Sbjct: 124 STGGSSAAFVKVCMDGAPYLRKVDLKMYRSYQELSDALAKMFSSFTMGNYGAQGMIDFMN 183

Query: 168 ESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           ESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPWE
Sbjct: 184 ESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWE 216

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332167937|gb|AEE25653.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 147/211 (69%), Positives = 160/211 (75%), Gaps = 28/211 (13%)

Query: 8   MDFKETELCLGLPGG------GNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQS 61
           ++FKETELCLGLPGG      GN         E + +PK + KRGF ET  +DLKLNLQS
Sbjct: 17  LNFKETELCLGLPGGIAVVAAGNE-------TESSSSPKTNGKRGFSET--VDLKLNLQS 67

Query: 62  KESSVDLNENFKNPPSNNKNHD-KDPAKPSANKAQVVGWPPVRSYRKNAMAET------- 113
           KES++DLN+N  +  S  K+   KDPAKP A KAQVVGWPPVRSYRKN MA         
Sbjct: 68  KESTMDLNKNLDDNGSKEKSGSAKDPAKPPA-KAQVVGWPPVRSYRKNIMANQKNSSEES 126

Query: 114 ----AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNES 169
               AA VKV MDGAPYLRKVDLK YKSYQELSDALAKMFSSFTMGNYG QGMIDFMNES
Sbjct: 127 GNSGAALVKVSMDGAPYLRKVDLKMYKSYQELSDALAKMFSSFTMGNYGPQGMIDFMNES 186

Query: 170 KLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           KLMDLLNSSDYVP+YEDKDGDWMLVGDVPW+
Sbjct: 187 KLMDLLNSSDYVPSYEDKDGDWMLVGDVPWQ 217

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248890|ref|NP_001240213.1| auxin-induced protein ali50 [Glycine max] gi|238058427|gb|ACR39367.1| Aux/IAA protein [Glycine max]

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 146/215 (67%), Positives = 158/215 (73%), Gaps = 36/215 (16%)

Query: 5   GLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKES 64
           GL ++ KETELCLGLPGGG+             TP+A+ KRGF ET  +DLKLNLQ+KE 
Sbjct: 10  GLSLNLKETELCLGLPGGGSE----------VETPRATGKRGFSET--VDLKLNLQTKE- 56

Query: 65  SVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMA------------- 111
             DLNEN KN  S  K   KDPAKP A KAQVVGWPPVRSYRKN MA             
Sbjct: 57  --DLNENLKNV-SKEKTLLKDPAKPPA-KAQVVGWPPVRSYRKNMMAVQKVSNEEVAEKT 112

Query: 112 ------ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDF 165
                  + AFVKV MDGAPYLRKVDL  YKSY++LSDALAKMFSSFTMGNYG+QGMIDF
Sbjct: 113 TSSTIANSGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDF 172

Query: 166 MNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           MNESKLMDLLNSS+YVPTYEDKDGDWMLVGDVPWE
Sbjct: 173 MNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWE 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111068|ref|XP_002315736.1| predicted protein [Populus trichocarpa] gi|222864776|gb|EEF01907.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/241 (61%), Positives = 163/241 (67%), Gaps = 57/241 (23%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           +++KETELCLGLPG    K       E+    KA+ KRGF ET  +DLKLNLQ+KE  +D
Sbjct: 14  LNYKETELCLGLPGAVGVKN------EVETPNKATGKRGFAET--VDLKLNLQAKEGVMD 65

Query: 68  LNENFKNPPSNNKNH-----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE---------- 112
           LNEN KN  S +KNH      KDPAKP A KAQVVGWPPVRSYRKN +A+          
Sbjct: 66  LNENIKNIASKDKNHLPADTIKDPAKPPA-KAQVVGWPPVRSYRKNVLAQKNASEEGFRA 124

Query: 113 ---------------------------------TAAFVKVCMDGAPYLRKVDLKTYKSYQ 139
                                            +AAFVKVCMDGAPYLRKVDLK YKSYQ
Sbjct: 125 QVVGWPPLRSYRKNVLTQKNASEEGDKASTGGSSAAFVKVCMDGAPYLRKVDLKMYKSYQ 184

Query: 140 ELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPW 199
           ELSDALAKMFSSFTMGNYG+QGMIDFMNESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPW
Sbjct: 185 ELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPW 244

Query: 200 E 200
           E
Sbjct: 245 E 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398581|gb|ADL36585.1| ARF domain class transcription factor [Malus x domestica]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/222 (67%), Positives = 162/222 (72%), Gaps = 35/222 (15%)

Query: 1   MEAIGLKMDF--KETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLN 58
           M  +G++ D   +ETELCLGLPGGG     E        T K + KRGF ET  IDLKLN
Sbjct: 2   MSMLGVERDLNLRETELCLGLPGGGTTTVAEPE------TAKTTGKRGFSET--IDLKLN 53

Query: 59  LQSKESSVDLNENFKNPPSNNKNH----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE-- 112
           LQSKE   DLN+N KN  S +KN+     KDP+KP A KAQVVGWPPVRSYRKN MA+  
Sbjct: 54  LQSKE---DLNDNVKNIASKDKNNFLSCTKDPSKPPA-KAQVVGWPPVRSYRKNIMAQKN 109

Query: 113 ---------------TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNY 157
                          TAAFVKVCMDGAPYLRKVDLK YKSYQELS+ALAKMFSSFT G Y
Sbjct: 110 TSEEKTKKASGGGGCTAAFVKVCMDGAPYLRKVDLKMYKSYQELSNALAKMFSSFTTGYY 169

Query: 158 GSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPW 199
           G+QGMIDFMNESKLMDLLNSS+YVPTYEDKDGDWMLVGDVPW
Sbjct: 170 GTQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPW 211

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406368278|gb|AFS44507.1| auxin repressor, partial [Fragaria x ananassa]

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 159/212 (75%), Gaps = 30/212 (14%)

Query: 6   LKMDFKETELCLGLPGGGNNKKDEAAALELTP---TPKASNKRGFCETAVIDLKLNLQSK 62
           + ++FKETELCLGLPGG        AAL   P   TPKA+ KRGF ET  +DLKLNL + 
Sbjct: 1   MTLNFKETELCLGLPGG--------AALTTEPEICTPKATGKRGFSET--VDLKLNLHAN 50

Query: 63  ESSVDLNENFKNPPSNNKNHD--KDPAKPSANKAQVVGWPPVRSYRKNAMA--------- 111
           E    +NE+ KN  S  KN    KDPAKP A KAQVVGWPPVRSYRKN MA         
Sbjct: 51  EGL--MNESVKNVSSREKNLPCIKDPAKPPA-KAQVVGWPPVRSYRKNVMAQKSTGEESS 107

Query: 112 ---ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNE 168
              E AAFVKVCMDGAPYLRKVDLK YKSY+ELSDAL+KMFSSFT G YG+QGMIDFMNE
Sbjct: 108 TTTEKAAFVKVCMDGAPYLRKVDLKMYKSYKELSDALSKMFSSFTTGYYGTQGMIDFMNE 167

Query: 169 SKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           SKLMDLLNS+DYVPTYEDKDGDWMLVGDVPWE
Sbjct: 168 SKLMDLLNSTDYVPTYEDKDGDWMLVGDVPWE 199

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|221271520|dbj|BAH15071.1| indole-3-acetic acid 14 transcription factor like [Malus prunifolia]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/221 (66%), Positives = 160/221 (72%), Gaps = 34/221 (15%)

Query: 1   MEAIGLKMDF--KETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLN 58
           M  +G++ D   +E ELCLGLPGGG     E        T K + KRGF ET  IDLKLN
Sbjct: 2   MSMLGVERDLNLREAELCLGLPGGGTTTVAEPE------TAKTTGKRGFSET--IDLKLN 53

Query: 59  LQSKESSVDLNENFKNPPSNNKNH----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE-- 112
           LQSKE   DLN+N KN  S +KN+     KDP+KP A KAQVVGWPPVRSYRKN MA+  
Sbjct: 54  LQSKE---DLNDNVKNIASKDKNNFLSCTKDPSKPPA-KAQVVGWPPVRSYRKNVMAQKN 109

Query: 113 --------------TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYG 158
                         TAAFVKVCMDGAPYLRKVDLK Y+SYQELS+ALAKMFSSFT G YG
Sbjct: 110 TSEEKTKKASAGGCTAAFVKVCMDGAPYLRKVDLKMYRSYQELSNALAKMFSSFTTGYYG 169

Query: 159 SQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPW 199
            QGMIDFMNESKLMDLLNSS+YVPTYEDKDGDWMLVGDVPW
Sbjct: 170 DQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPW 210

Source: Malus prunifolia

Species: Malus prunifolia

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20269059|emb|CAC84710.1| aux/IAA protein [Populus tremula x Populus tremuloides]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/241 (60%), Positives = 160/241 (66%), Gaps = 57/241 (23%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           +++K TELCLGLPG    K       E+    KA+ KRGF ET  +DLKLNLQ+KE  +D
Sbjct: 14  LNYKATELCLGLPGAVGVKN------EVETPNKATGKRGFAET--VDLKLNLQAKEGVMD 65

Query: 68  LNENFKNPPSNNKNH-----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE---------- 112
           LNEN  N  S +KNH      KDPAKP A KAQVVGWPPVRSYRKN +A+          
Sbjct: 66  LNENINNIASEDKNHLPSATIKDPAKPPA-KAQVVGWPPVRSYRKNVLAQKNASEEGFGA 124

Query: 113 ---------------------------------TAAFVKVCMDGAPYLRKVDLKTYKSYQ 139
                                            +AAFVKVCMDGAPYLRKVDLK YKSYQ
Sbjct: 125 QVEGWPPVRSYRKNVLVQKNASEEGEKASTGGCSAAFVKVCMDGAPYLRKVDLKMYKSYQ 184

Query: 140 ELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPW 199
           ELSDALAKMFSS TMGNYG+QGMIDFMNESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPW
Sbjct: 185 ELSDALAKMFSSLTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPW 244

Query: 200 E 200
           E
Sbjct: 245 E 245

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432892|ref|XP_002284133.1| PREDICTED: auxin-responsive protein IAA14-like isoform 1 [Vitis vinifera]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 143/177 (80%), Gaps = 17/177 (9%)

Query: 38  TPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPS--NNKNHDKDPAKPSANKAQ 95
           T KAS KRGF ET  +DLKLNLQSKES VDLNEN K PP   N     KDPAKP A KAQ
Sbjct: 38  TLKASGKRGFSET--VDLKLNLQSKESVVDLNENVKCPPKEKNLLPCTKDPAKPPA-KAQ 94

Query: 96  VVGWPPVRSYRKNAMAET------------AAFVKVCMDGAPYLRKVDLKTYKSYQELSD 143
           VVGWPPVRS+RKN MA+             AAFVKVCMDGAPYLRKVDLK YKSYQELSD
Sbjct: 95  VVGWPPVRSFRKNIMAQKNSSEEGEKGSSGAAFVKVCMDGAPYLRKVDLKMYKSYQELSD 154

Query: 144 ALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
           AL KMFSSFTMGNYG+QGMIDFMNESKLMDLLNSS+YVPTYEDKDGDWMLVGDVPWE
Sbjct: 155 ALGKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWE 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.895	0.785	0.653	1.9e-60
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.895	0.781	0.589	2.6e-54
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.47	0.308	0.656	3.5e-44
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.97	0.798	0.504	3.5e-43
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.655	0.387	0.573	1.5e-41
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.96	0.813	0.480	1.8e-39
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.935	0.802	0.5	7.8e-39
UNIPROTKB|Q5VRD1	199	IAA1 "Auxin-responsive protein	0.515	0.517	0.610	6.8e-37
UNIPROTKB|Q6AT33	281	IAA19 "Auxin-responsive protei	0.855	0.608	0.439	2.3e-32
UNIPROTKB|Q6AT10	212	IAA15 "Auxin-responsive protei	0.585	0.551	0.533	3.8e-30

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 136/208 (65%), Positives = 150/208 (72%)

Query:     8 MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQS-KESSV 66
             M+ KETELCLGLPGG    +  A +          NKRGF ET  +DLKLNLQS K+  V
Sbjct:     1 MNLKETELCLGLPGGTETVESPAKS-------GVGNKRGFSET--VDLKLNLQSNKQGHV 51

Query:    67 DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE-------------- 112
             DLN N    P   K   KDP+KP A KAQVVGWPPVR+YRKN MA               
Sbjct:    52 DLNTN--GAPKE-KTFLKDPSKPPA-KAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGG 107

Query:   113 -TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKL 171
              T AFVKV MDGAPYLRKVDLK Y SY++LSDALAKMFSSFTMG+YG+QGMIDFMNESK+
Sbjct:   108 GTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKV 167

Query:   172 MDLLNSSDYVPTYEDKDGDWMLVGDVPW 199
             MDLLNSS+YVP+YEDKDGDWMLVGDVPW
Sbjct:   168 MDLLNSSEYVPSYEDKDGDWMLVGDVPW 195

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 122/207 (58%), Positives = 144/207 (69%)

Query:     6 LKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESS 65
             ++++ +ETELCLGLPGG             T  P   NKRGF ET  +DLKLNL ++ ++
Sbjct:     5 VELNLRETELCLGLPGGD------------TVAPVTGNKRGFSET--VDLKLNLNNEPAN 50

Query:    66 VDLNENFKNPPSNNKNHD---KDPAKPSANKAQVVGWPPVRSYRKNAMA---------ET 113
              + +        ++K      KDPAKP A KAQVVGWPPVRSYRKN M          E 
Sbjct:    51 KEGSTTHDVVTFDSKEKSACPKDPAKPPA-KAQVVGWPPVRSYRKNVMVSCQKSSGGPEA 109

Query:   114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQ-GMIDFMNESKLM 172
             AAFVKV MDGAPYLRK+DL+ YKSY ELS+AL+ MFSSFTMG +G + GMIDFMNE KLM
Sbjct:   110 AAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLM 169

Query:   173 DLLNSSDYVPTYEDKDGDWMLVGDVPW 199
             DL+NS DYVP+YEDKDGDWMLVGDVPW
Sbjct:   170 DLVNSWDYVPSYEDKDGDWMLVGDVPW 196

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 3.5e-44, Sum P(3) = 3.5e-44
 Identities = 63/96 (65%), Positives = 73/96 (76%)

Query:   107 KNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMI--D 164
             K+   +   +VKV M+GAPYLRK+DLKTYKSY ELS AL KMFS FT+G +GS G    D
Sbjct:   178 KSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRD 237

Query:   165 FMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
              +NES+L DLL  S+YV TYEDKD DWMLVGDVPWE
Sbjct:   238 GLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 107/212 (50%), Positives = 131/212 (61%)

Query:     4 IGLKMDFKETELCLGLPGGGN-----------NKKDEAAALELTPTPKASNKRGFCE--- 49
             IG  M+ K TELCLGLPGG             +K+  +  ++L    + SNK G  +   
Sbjct:     2 IGQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQ-SNKEGSVDLKN 60

Query:    50 -TAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKN 108
              +AV   K  L+         +    PP  N   +    + +++ A+        ++   
Sbjct:    61 VSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGG 120

Query:   109 AMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNE 168
             A    A  VKV MDGAPYLRKVDLK YKSYQ+LSDALAKMFSSFTMGNYG+QGMIDFMNE
Sbjct:   121 AAG--AGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNE 178

Query:   169 SKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
             SKLM+LLNSS+YVP+YEDKDGDWMLVGDVPWE
Sbjct:   179 SKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 86/150 (57%), Positives = 102/150 (68%)

Query:    67 DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAET------------- 113
             D+ +N     S+  N+   P  P+A KAQ+VGWPPVRSYRKN +A T             
Sbjct:   158 DVPQNIPKGQSSTTNNSSSP--PAA-KAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS 214

Query:   114 -AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMI--DFMNESK 170
              A FVKV MDGAPYLRKVDL++Y +Y ELS AL KMF++FT+G  GS G    D ++E+K
Sbjct:   215 GALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETK 274

Query:   171 LMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
             L DLLN  DYV TYEDKDGDWMLVGDVPWE
Sbjct:   275 LKDLLNGKDYVLTYEDKDGDWMLVGDVPWE 304

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 98/204 (48%), Positives = 123/204 (60%)

Query:     8 MDFKETELCLGLPGGGNN-----KKDEAAALELTPTPKAS-NKRGFCETAVIDLKLNLQS 61
             ++F+ TEL LGLPGG +      K +       T   K + +       + +DL+ N++ 
Sbjct:     2 INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLE-NMKE 60

Query:    62 KESSVDLNENFKN-PPSNN-KNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE---TAAF 116
             K             PP  + + +     KP+   A         S    + A    T A+
Sbjct:    61 KVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAY 120

Query:   117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLN 176
             VKV MDGAPYLRK+DLK YK+YQ+LS+AL+KMFSSFT+GNYG QGM DFMNESKL+DLLN
Sbjct:   121 VKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLN 180

Query:   177 SSDYVPTYEDKDGDWMLVGDVPWE 200
              SDYVPTYEDKDGDWMLVGDVPWE
Sbjct:   181 GSDYVPTYEDKDGDWMLVGDVPWE 204

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 103/206 (50%), Positives = 122/206 (59%)

Query:     8 MDFKETELCLGLPGGG------NNKKD--EAAALELTPTPKASNKRGFCETAVIDLKLNL 59
             + F ETEL LGLPG G      + K+   E   L+L   P A       E A  D K + 
Sbjct:     4 LGFDETELRLGLPGAGELAARSSGKRGFAETIDLKLKLQPAAPAAVSGEEGAQED-KEDA 62

Query:    60 QSKESSVDLNENFKNPPSNNK--NHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE---TA 114
              +  ++ D   + K   S +     + DP KP A KAQVVGWPPVRS+RKN +AE    A
Sbjct:    63 DAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLAEKCKAA 122

Query:   115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDL 174
             A VKV MDGAPYLRK+D+  YKSY ELS A   MF+SFT+G  GS   +   N  KL D 
Sbjct:   123 ALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESN--KLRDD 180

Query:   175 LNSSDYVPTYEDKDGDWMLVGDVPWE 200
             L   +YVPTYEDKDGDWMLVGDVPWE
Sbjct:   181 L---EYVPTYEDKDGDWMLVGDVPWE 203

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5VRD1 IAA1 "Auxin-responsive protein IAA1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 343 (125.8 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
 Identities = 69/113 (61%), Positives = 83/113 (73%)

Query:    89 PSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALA-K 147
             P A KA+VVGWPPVRS+RKNA+A  A FVKV +DGAPYLRKVDL+ Y  Y +L  AL  K
Sbjct:    70 PPAPKARVVGWPPVRSFRKNALA--AKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDK 127

Query:   148 MFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 200
              FS FT+  +         +E KL+D +N ++YVPTYEDKDGDWMLVGDVPW+
Sbjct:   128 FFSHFTIRKFAD-------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWK 173

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q6AT33 IAA19 "Auxin-responsive protein IAA19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 84/191 (43%), Positives = 104/191 (54%)

Query:    28 DEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPA 87
             D A  L   P P+   KRGF ++  +D     ++  ++ D     +      K   +  A
Sbjct:    61 DAALTLGPAPPPRGGAKRGFVDS--LDRSEGRRAAATAGDDERGVREEEEEEKGLGEAAA 118

Query:    88 -KPSANKAQVVGWPPVRSYRKNAMAETAA---------------FVKVCMDGAPYLRKVD 131
               P A KAQVVGWPPVRSYRKN +A +A                +VKV MDGAPYLRKVD
Sbjct:   119 GAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVD 178

Query:   132 LKTYKSYQELSDALAKMFSSFTMGNYGSQ--GMIDFMNESKLMDLLNSSDYVPTYEDKDG 189
             LKTY SY++LS AL KMFS F  G   S      D + +    D L   +YV TYEDKD 
Sbjct:   179 LKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDA 238

Query:   190 DWMLVGDVPWE 200
             DWMLVGD+PW+
Sbjct:   239 DWMLVGDLPWD 249

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q6AT10 IAA15 "Auxin-responsive protein IAA15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 71/133 (53%), Positives = 89/133 (66%)

Query:    76 PSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA-------FVKVCMDGAPYLR 128
             P N        + PS  KA+VVGWPPVR++RKNA+A  AA       FVKV +DGAPYLR
Sbjct:    63 PDNRLGSTATESPPSP-KARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLR 121

Query:   129 KVDLKTYKSYQELSDALA-KMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDK 187
             KVDL+ Y+ Y +L  AL  K FS FT+   G++       E KL+D ++ ++YVPTYEDK
Sbjct:   122 KVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNE-------EMKLVDAVSGNEYVPTYEDK 174

Query:   188 DGDWMLVGDVPWE 200
             DGDWMLVGDVPW+
Sbjct:   175 DGDWMLVGDVPWK 187

GO:0009733 "response to auxin stimulus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C132	IAA30_ORYSJ	No assigned EC number	0.5060	0.925	0.6678	yes	no
Q38832	IAA14_ARATH	No assigned EC number	0.6490	0.895	0.7850	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VIII2464 SubName- Full=Putative uncharacterized protein; (249 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	2e-79

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  234 bits (600), Expect = 2e-79
 Identities = 104/195 (53%), Positives = 123/195 (63%), Gaps = 33/195 (16%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           ++ K TEL LGLPGG   + +       + +   SNKRGF E              SS+ 
Sbjct: 1   LNLKATELRLGLPGGSEPESEP------STSSVTSNKRGFSEVTE-------DGISSSLG 47

Query: 68  LNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE--TAAFVKVCMDGAP 125
            +++  +  SN      D AKP A KAQVVGWPPVRSYRKN++ E  + ++VKV MDGAP
Sbjct: 48  EDKSTISVSSNG-----DSAKPPA-KAQVVGWPPVRSYRKNSLREKKSGSYVKVSMDGAP 101

Query: 126 YLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYE 185
           YLRKVDLK YKSY ELS AL KMFS FT+G            ES L+DLLN S+YVPTYE
Sbjct: 102 YLRKVDLKMYKSYDELSSALEKMFSCFTIG------------ESGLLDLLNGSEYVPTYE 149

Query: 186 DKDGDWMLVGDVPWE 200
           DKDGDWMLVGDVPWE
Sbjct: 150 DKDGDWMLVGDVPWE 164

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.31
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.22
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.08
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.85
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.75
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.42
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.04
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.91
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.82
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.78
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.61
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	94.96
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.97

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=2.8e-58  Score=390.64  Aligned_cols=184  Identities=51%  Similarity=0.861  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCCchhhHhhhhcCCCCCCCCCCCCcchhhhhhhhcccccccccccc-cCCCC-CCCCCCCCCCC
Q 029018            8 MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLN-ENFKN-PPSNNKNHDKD   85 (200)
Q Consensus         8 l~~~~TELRLGLPG~~~~~~~~~~~~~~~~~~~~~~KR~fset~~~dl~l~l~~~~~~~~~~-~~~~~-~~~~~~~~~~d   85 (200)
                      ||||+|||||||||+.+++..   .........+++||+|+++  ++............... ..... ..........+
T Consensus         1 ln~~~TELrLGLPG~~~~~~~---~~~~~~~~~~~~kR~F~~a--id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDAS---SSSSSKKSSSGNKRGFSEA--IDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSS   75 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcc---cccccccccCcccccchhh--hhhcccccccccccccccCcccccccccccccccc
Confidence            799999999999998654210   0011223567889999998  76543110000000000 00000 00000000112


Q ss_pred             CCCCCCccCCccccCCCCccchhhhcc-----CCceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCc
Q 029018           86 PAKPSANKAQVVGWPPVRSYRKNAMAE-----TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQ  160 (200)
Q Consensus        86 ~~~pp~~k~qvVGWPPVrs~Rkn~~~~-----~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~  160 (200)
                      ...+|++++|+|||||||+||||++..     .++||||+|||+||||||||++|+||++|+.+|++||.+|.|.+|+++
T Consensus        76 ~~~~p~~~~~~vgwpp~~s~r~n~~~~~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~  155 (215)
T PF02309_consen   76 SSSPPASKAQVVGWPPVRSFRKNSLSEKQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSH  155 (215)
T ss_dssp             ----------BTTBS----S------------------------------------------------------------
T ss_pred             cCCCCcccccccCCCcccccccccccccccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccc
Confidence            334455789999999999999998773     579999999999999999999999999999999999998888888775


Q ss_pred             CccccchhhhhhccCCCCCeEEEEEeCCCCEEecccCCCC
Q 029018          161 GMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE  200 (200)
Q Consensus       161 g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLVGDvPWe  200 (200)
                      +    .++..+.+++++++|+|||||+||||||||||||+
T Consensus       156 ~----~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~  191 (215)
T PF02309_consen  156 G----LNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWE  191 (215)
T ss_dssp             ----------------------------------------
T ss_pred             c----ccchhhccccCCcceeEEEECCCCCEEEecCCCHH
Confidence            4    55667777788899999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.31  E-value=0.00082  Score=48.12  Aligned_cols=56  Identities=27%  Similarity=0.476  Sum_probs=46.3

Q ss_pred             eeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEecc
Q 029018          116 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (200)
Q Consensus       116 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLVG  195 (200)
                      -|||...|. +=|.+.+..--+|.+|...+++.|...                        ...+.+.|.|.||||..+-
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~Y~D~dgD~V~i~   57 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL------------------------DEDFQLKYKDEDGDLVTIS   57 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS------------------------TSSEEEEEEETTSSEEEES
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC------------------------CccEEEEeeCCCCCEEEeC
Confidence            489999998 444688888889999999999999751                        3468999999999998875


Q ss_pred             c
Q 029018          196 D  196 (200)
Q Consensus       196 D  196 (200)
                      +
T Consensus        58 s   58 (84)
T PF00564_consen   58 S   58 (84)
T ss_dssp             S
T ss_pred             C
Confidence            3

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.22  E-value=0.0013  Score=49.99  Aligned_cols=57  Identities=25%  Similarity=0.276  Sum_probs=45.2

Q ss_pred             eeEEEEeCccccceeecC---CCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEE
Q 029018          116 FVKVCMDGAPYLRKVDLK---TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWM  192 (200)
Q Consensus       116 ~VKV~MdG~pigRKVDL~---~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwM  192 (200)
                      -|||.-+|.-+=-++++.   .--+|++|...+.+.|...                       ...+|+|.|.|.||||.
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-----------------------~~~~~~l~Y~Dedgd~V   58 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-----------------------PDADLSLTYTDEDGDVV   58 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-----------------------CCCcEEEEEECCCCCEE
Confidence            489999999544455553   4679999999999999751                       13589999999999998


Q ss_pred             ecc
Q 029018          193 LVG  195 (200)
Q Consensus       193 LVG  195 (200)
                      .+-
T Consensus        59 ~l~   61 (91)
T cd06398          59 TLV   61 (91)
T ss_pred             EEc
Confidence            764

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.08  E-value=0.0024  Score=47.60  Aligned_cols=54  Identities=26%  Similarity=0.404  Sum_probs=43.3

Q ss_pred             eeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          116 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       116 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      =|||+..|.  .+.+-|..--+|++|...+.++|..   .                    +.+.|.|-|.|.||||.++
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~---~--------------------~~~~f~LkY~Ddegd~v~l   55 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL---D--------------------DMSAFDLKYLDDDEEWVLL   55 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC---C--------------------CCCeeEEEEECCCCCeEEe
Confidence            389999887  4455555566999999999999974   0                    1357999999999999875

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=96.85  E-value=0.0059  Score=43.63  Aligned_cols=54  Identities=26%  Similarity=0.506  Sum_probs=43.7

Q ss_pred             eEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEeccc
Q 029018          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD  196 (200)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLVGD  196 (200)
                      |||.-.|.  -|.+-+..--+|.+|...+.+.|..                        ....+.|.|+|.||||..+.+
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~------------------------~~~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL------------------------DNQSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC------------------------CCCCeEEEEECCCCCEEEecC
Confidence            78887544  6777888889999999999999974                        124689999999999987653

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.75  E-value=0.0052  Score=46.21  Aligned_cols=52  Identities=19%  Similarity=0.236  Sum_probs=45.5

Q ss_pred             eEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      |||.-.|.-+--+++-+..-+|++|...+.++|+.                        +  .|.|.|-|.||||.++
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l------------------------~--~f~lKYlDde~e~v~l   54 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL------------------------N--DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC------------------------C--cceeEEEcCCCCEEEE
Confidence            89999999777788887788999999999999975                        1  5789999999999986

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.42  E-value=0.018  Score=40.83  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=42.9

Q ss_pred             eeEEEEeCccccceeecC-CCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          116 FVKVCMDGAPYLRKVDLK-TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       116 ~VKV~MdG~pigRKVDL~-~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      -|||.-.|.  -|.+=+. .--+|++|...|.+.|...                        ...+.+.|.|.||||..+
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~y~D~e~d~v~l   55 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD------------------------AVSFKLKYPDEDGDLVTI   55 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC------------------------CCcEEEEeeCCCCCEEEe
Confidence            378888865  3444444 8889999999999999751                        146799999999999887


Q ss_pred             cc
Q 029018          195 GD  196 (200)
Q Consensus       195 GD  196 (200)
                      .+
T Consensus        56 ~s   57 (81)
T cd05992          56 SS   57 (81)
T ss_pred             CC
Confidence            64

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.04  E-value=0.018  Score=43.37  Aligned_cols=54  Identities=19%  Similarity=0.294  Sum_probs=40.8

Q ss_pred             eEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      ||...|..=-=-.+|.....+|+++++-|+.||..                        .+..|+|.|.|.+||.+-+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l------------------------~~~~f~i~Y~D~~gDLLPI   56 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI------------------------PNVDFLIGYTDPHGDLLPI   56 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC------------------------CCCcEEEEEeCCCCCEecc
Confidence            66666666222245556679999999999999975                        1357899999999998744

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.91  E-value=0.024  Score=42.91  Aligned_cols=53  Identities=23%  Similarity=0.347  Sum_probs=42.8

Q ss_pred             eEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      ||+.-.|.-+--.+|.  .-+|++|.+.+.+||..                       ..+..|++.|.|.|||---+
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-----------------------~~~q~ft~kw~DEEGDp~ti   55 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-----------------------HNDQPFTLKWIDEEGDPCTI   55 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-----------------------CCCCcEEEEEECCCCCceee
Confidence            7999999966666666  67899999999999985                       12457999999999996543

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.82  E-value=0.022  Score=43.18  Aligned_cols=50  Identities=22%  Similarity=0.373  Sum_probs=38.3

Q ss_pred             ccccceeecCC--CCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          124 APYLRKVDLKT--YKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       124 ~pigRKVDL~~--~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      .|-||.+=++.  ..|+.+|..++.+=|+.-.                     .....|.|.|.|.||||.++
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~---------------------~~~~~~~L~YlDDEgD~Vll   58 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD---------------------FETHLYALSYVDDEGDIVLI   58 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc---------------------ccCCcccEEEEcCCCCEEEE
Confidence            56777665553  7899999999999997510                     01357899999999999986

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.78  E-value=0.051  Score=41.29  Aligned_cols=57  Identities=25%  Similarity=0.454  Sum_probs=43.0

Q ss_pred             ceeEEEEeC---ccccceeec--CCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCC
Q 029018          115 AFVKVCMDG---APYLRKVDL--KTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDG  189 (200)
Q Consensus       115 ~~VKV~MdG---~pigRKVDL--~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdG  189 (200)
                      +.||.+..|   .+=-|++-|  ....+|++|...+.++|..                       +.+..|++.|.|.||
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-----------------------l~~~~ftlky~DeeG   57 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-----------------------LRGKNFQLFWKDEEG   57 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-----------------------cCCCcEEEEEECCCC
Confidence            368888877   333455444  6667999999999999964                       124689999999999


Q ss_pred             CEEec
Q 029018          190 DWMLV  194 (200)
Q Consensus       190 DwMLV  194 (200)
                      |..-+
T Consensus        58 DlvtI   62 (87)
T cd06402          58 DLVAF   62 (87)
T ss_pred             CEEee
Confidence            98654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.61  E-value=0.061  Score=40.57  Aligned_cols=57  Identities=25%  Similarity=0.412  Sum_probs=40.8

Q ss_pred             eEEEEeCccccceeecCCC-CCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEecc
Q 029018          117 VKVCMDGAPYLRKVDLKTY-KSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (200)
Q Consensus       117 VKV~MdG~pigRKVDL~~~-~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLVG  195 (200)
                      +|+.-.|. | |++=+..- -+|.+|...+++.|....                     -....+.+.|.|.|||+.-|-
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~~---------------------~~~~~flIKYkD~dGDlVTIt   59 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGKL---------------------GSSDDVLIKYKDEDGDLITIF   59 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhcccc---------------------CCcccEEEEEECCCCCEEEec
Confidence            67777665 4 55544442 399999999999998410                     013478999999999998664


Q ss_pred             c
Q 029018          196 D  196 (200)
Q Consensus       196 D  196 (200)
                      +
T Consensus        60 s   60 (81)
T cd06401          60 D   60 (81)
T ss_pred             c
Confidence            3

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=94.96  E-value=0.094  Score=39.67  Aligned_cols=53  Identities=19%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             eEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEecc
Q 029018          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (200)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLVG  195 (200)
                      -||+-.|.  .|++-...-=+|..|...|+.+|....                       . .+.+||.|.|||..-+-
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~-----------------------~-~~~vtYiDeD~D~ITls   55 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE-----------------------I-KVGVTYIDNDNDEITLS   55 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh-----------------------h-HeEEEEEcCCCCEEEec
Confidence            47888886  788888888999999999999998621                       1 27999999999987543

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.97  E-value=0.39  Score=36.51  Aligned_cols=54  Identities=20%  Similarity=0.320  Sum_probs=44.0

Q ss_pred             ceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       115 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      .-|||+-.|.  .|-|-+..-=+|++|...+.++|+.                         ...+.+-|.|. ||..-+
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-------------------------~~~~~iKykDE-GD~iti   54 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-------------------------KRRLKIKMKDD-GDMITM   54 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-------------------------CCceEEEEEcC-CCCccc
Confidence            3589998888  6667777777899999999999984                         13579999999 998777


Q ss_pred             cc
Q 029018          195 GD  196 (200)
Q Consensus       195 GD  196 (200)
                      ++
T Consensus        55 ~s   56 (86)
T cd06408          55 GD   56 (86)
T ss_pred             cC
Confidence            65

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.23
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.23
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.91
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.77
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	89.42
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	83.83

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.23  E-value=0.0095  Score=44.26  Aligned_cols=55  Identities=22%  Similarity=0.237  Sum_probs=42.9

Q ss_pred             ceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       115 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      +=|||+-.|.-+  -+.+..--+|++|...|.++|...                       .+..+++.|.|.|||+.-+
T Consensus         7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~iti   61 (89)
T 1vd2_A            7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPCTV   61 (89)
T ss_dssp             EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCEEC
T ss_pred             EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcccc
Confidence            468999999844  444455679999999999999841                       1457899999999998654

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.23  E-value=0.01  Score=44.00  Aligned_cols=57  Identities=21%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             CceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEe
Q 029018          114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML  193 (200)
Q Consensus       114 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwML  193 (200)
                      ..-||...|..--=-.||-....+|++|..-|+++|..                        ...+|++.|.|.|||++-
T Consensus         6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLlp   61 (86)
T 1wmh_B            6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLP   61 (86)
T ss_dssp             EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEE
T ss_pred             EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEee
Confidence            34588888887433355656778999999999999974                        134689999999999975


Q ss_pred             c
Q 029018          194 V  194 (200)
Q Consensus       194 V  194 (200)
                      +
T Consensus        62 I   62 (86)
T 1wmh_B           62 L   62 (86)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.91  E-value=0.017  Score=45.01  Aligned_cols=67  Identities=18%  Similarity=0.315  Sum_probs=43.7

Q ss_pred             cchhhhccCCceeEEEEeCc----cccceeecC-----------CCCCHHHHHHHHHHhhcccccCCcCCcCccccchhh
Q 029018          105 YRKNAMAETAAFVKVCMDGA----PYLRKVDLK-----------TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNES  169 (200)
Q Consensus       105 ~Rkn~~~~~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~  169 (200)
                      |--|.++...+-||++..|.    .=-|++-|.           .-.+|++|...++++|..                  
T Consensus        11 ~~~~~~~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~------------------   72 (117)
T 2ktr_A           11 YEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA------------------   72 (117)
T ss_dssp             ---------CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT------------------
T ss_pred             eeccccccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc------------------
Confidence            34445555678899999752    233555554           135999999999999964                  


Q ss_pred             hhhccCCCCCeEEEEEeCCCCEEec
Q 029018          170 KLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       170 ~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                           +.+..|.+.|.|.|||+.-+
T Consensus        73 -----L~~~~f~l~YkDEdGDlItI   92 (117)
T 2ktr_A           73 -----LRPGGFQAHYRAERGDLVAF   92 (117)
T ss_dssp             -----SCSSCEEEEEECTTCCEEEE
T ss_pred             -----cCCCcEEEEEECCCCCEEEe
Confidence                 12457999999999998754

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.77  E-value=0.018  Score=43.80  Aligned_cols=59  Identities=19%  Similarity=0.316  Sum_probs=43.4

Q ss_pred             CceeEEEEeCc----cccceeecCC-----------CCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCC
Q 029018          114 AAFVKVCMDGA----PYLRKVDLKT-----------YKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSS  178 (200)
Q Consensus       114 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~s  178 (200)
                      ++-||++..|.    .=-|++-|..           ..+|++|...++++|..                       +.+.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-----------------------l~~~   61 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-----------------------LRPG   61 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-----------------------SCSS
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-----------------------cCCC
Confidence            45689998762    2446655532           24899999999999974                       1245


Q ss_pred             CeEEEEEeCCCCEEecc
Q 029018          179 DYVPTYEDKDGDWMLVG  195 (200)
Q Consensus       179 eyvltYeDkdGDwMLVG  195 (200)
                      .|.+.|.|.|||+.-+-
T Consensus        62 ~f~l~Y~DedGDlItiS   78 (102)
T 2kkc_A           62 GFQAHYRAERGDLVAFS   78 (102)
T ss_dssp             CEEEEEECTTCCEEEEC
T ss_pred             cEEEEEECCCCCEEEec
Confidence            79999999999987553

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=89.42  E-value=0.97  Score=34.06  Aligned_cols=64  Identities=16%  Similarity=0.336  Sum_probs=45.7

Q ss_pred             CceeEEEEeCc------cccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeC
Q 029018          114 AAFVKVCMDGA------PYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDK  187 (200)
Q Consensus       114 ~~~VKV~MdG~------pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDk  187 (200)
                      +.-|||+-+..      .=.|.|=+..--+|++|...+.+-|..+. .    +            + . .....+-|+|.
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~----~------------~-i-~~~~klkYkDE   65 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-N----N------------N-I-SPITKIKYQDE   65 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-S----S------------C-C-CCCCCEEEECS
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-c----c------------c-c-cceeEEEEEcC
Confidence            35688887743      12366667788899999999999998631 0    0            0 0 12468999999


Q ss_pred             CCCEEeccc
Q 029018          188 DGDWMLVGD  196 (200)
Q Consensus       188 dGDwMLVGD  196 (200)
                      |||+...++
T Consensus        66 dGD~Vtl~s   74 (98)
T 1q1o_A           66 DGDFVVLGS   74 (98)
T ss_dssp             SSCEEEECS
T ss_pred             CCCEEEEcC
Confidence            999988775

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=83.83  E-value=1.6  Score=33.43  Aligned_cols=38  Identities=24%  Similarity=0.392  Sum_probs=31.5

Q ss_pred             ecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          131 DLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       131 DL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      ||+.--.|.+|..-..+-|...                          +-+|-|.|.|||+.-+
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIri   65 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRL   65 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEEC
T ss_pred             ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEE
Confidence            6778889999999999999741                          3478899999999755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.89
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.51
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	89.36

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00096  Score=47.74  Aligned_cols=55  Identities=9%  Similarity=0.108  Sum_probs=46.1

Q ss_pred             ceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       115 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      .=|||+..|..+=-+|-+....+|.+|...|.+.|..                          .++.|.|.|.|+||.++
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l--------------------------~~~~lkY~Ddd~e~v~l   58 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVSI   58 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC--------------------------SSEEEEEECTTSCEEEE
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc--------------------------ccceEEEEcCCCCEEEE
Confidence            3489999998666678777889999999999999974                          13689999999999987


Q ss_pred             c
Q 029018          195 G  195 (200)
Q Consensus       195 G  195 (200)
                      .
T Consensus        59 ~   59 (85)
T d2bkfa1          59 N   59 (85)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.0076  Score=42.11  Aligned_cols=54  Identities=17%  Similarity=0.207  Sum_probs=41.9

Q ss_pred             CceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEe
Q 029018          114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML  193 (200)
Q Consensus       114 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwML  193 (200)
                      ..-|||+..+.-+  .+=|..--+|.+|...+.+.|..                          ..++|-|.|.||||..
T Consensus        12 ~ikVKv~~~~D~~--~~~l~~~it~~dL~~kI~~rf~~--------------------------~~~~lkY~Dedgd~v~   63 (85)
T d1ip9a_          12 TTKIKFYYKDDIF--ALMLKGDTTYKELRSKIAPRIDT--------------------------DNFKLQTKLFDGSGEE   63 (85)
T ss_dssp             CEEEEECBTTCCE--EEEECSCCCHHHHHHHHHHHHTS--------------------------SCEEEEECCSSSCCSC
T ss_pred             CEEEEEEECCcEE--EEEeCCCCCHHHHHHHHHHHhCC--------------------------CceEEEEEcCCCCEEE
Confidence            4568999988844  44445567899999999999963                          1379999999999976


Q ss_pred             cc
Q 029018          194 VG  195 (200)
Q Consensus       194 VG  195 (200)
                      +-
T Consensus        64 i~   65 (85)
T d1ip9a_          64 IK   65 (85)
T ss_dssp             CC
T ss_pred             Ee
Confidence            53

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.47  Score=33.11  Aligned_cols=53  Identities=25%  Similarity=0.365  Sum_probs=39.6

Q ss_pred             eEEEEeCccccc-eeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018          117 VKVCMDGAPYLR-KVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (200)
Q Consensus       117 VKV~MdG~pigR-KVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV  194 (200)
                      ||=..|-. +=| .+|.....+|++.+.-|++|-..                        .+.++++.|.|.+||.+-+
T Consensus         5 VKSKFdAE-fRRFsl~r~~~~~fe~F~~Lle~~H~l------------------------~~~~f~i~Y~D~hgDLLPI   58 (82)
T d1wmhb_           5 VKSKFDAE-FRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLPL   58 (82)
T ss_dssp             EEEEETTE-EEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEEC
T ss_pred             eecccCce-EEEeeeccccccCHHHHHHHHHHHcCC------------------------CCCcEEEEEecCCCCcccc
Confidence            44444333 333 57778889999999999999864                        2457899999999998754