Citrus Sinensis ID: 029063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGGPFQAVGA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEEcccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
MGRAINKTVMIAELIKRRIAglhqntsigstditdmwepleegllplettrHVSMITITLSkkdldtsstgyqpplpadqvkpwnefedegegsprgrgrgrggrgrgrgrggfyngagdynvdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygeleappvgrgrgrgrargrgrgrnprsggpfqavga
Flexible Loop (DISEMBL)
MGRAINKTVMIAELIKRriaglhqntsigstditdMWEPLEEGLLPLETTRHVSMITITlskkdldtsstgyqpplpadqvkpWNEFEdegegsprgrgrgrggrgrgrgrggfyngagdynvdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygeleappvgrgrgrgrargrgrgrnprsggpfqavga
Low Complexity Region (SEG)
MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWepleegllpleTTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPrgrgrgrggrgrgrgrggFYNGAGDYNVdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygELEAPPVgrgrgrgrargrgrgrnprsggPFQAVGA
Disordered region (IsUnstruct)
*****NKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL*******************************************************************************************Y*****GYYDY*************************************
Disordered Region (DISOPRED)
***AINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLP**************************************************************************************************************************
Disordered Region (DISEMBL)
MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNE*********************GRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV*****************************
Disordered Region (DISPRO)
*GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQV***************************************************************************G*YY***ELEAPP******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGGPFQAVGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q99JH1	163	Ribonuclease P protein su	yes	no	0.371	0.453	0.460	7e-11
Q8N5L8	163	Ribonuclease P protein su	yes	no	0.371	0.453	0.447	2e-10
Q2KIR4	163	Ribonuclease P protein su	no	no	0.371	0.453	0.421	7e-09
Q9BUL9	199	Ribonuclease P protein su	no	no	0.386	0.386	0.402	9e-09
Q5PPN2	199	Ribonuclease P protein su	no	no	0.376	0.376	0.376	2e-08
Q91WE3	199	Ribonuclease P protein su	no	no	0.376	0.376	0.376	2e-08

>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1

 Score = 67.0 bits (162), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 2   GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 59
           GRA  K V  AE++KRR+ GLHQ T +      D W P   + GL PL   RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query: 60  LSKKDLDTSSTGYQPP 75
           LS+  LD S  GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136

May be a component of ribonuclease P or MRP.
Mus musculus (taxid: 10090)

>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 2   GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 59
           GRA  K V  AE++KRR+ GLHQ T +      D W P   + GL PL   RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120

Query: 60  LSKKDLDTSSTGYQPP 75
           LS+  LD +  GYQPP
Sbjct: 121 LSRDPLDPNECGYQPP 136

May be a component of ribonuclease P or MRP.

Homo sapiens (taxid: 9606)

>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1

 Score = 60.5 bits (145), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 2   GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 59
           GRA  K V  AE++KRR+ GL+Q T +      D W P   + GL PL    HV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120

Query: 60  LSKKDLDTSSTGYQPP 75
           LS+  LD +  GYQPP
Sbjct: 121 LSRDPLDPNEYGYQPP 136

May be a component of ribonuclease P or MRP.

Bos taurus (taxid: 9913)

>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL----EEGLLP------LETT 50
            GRA  KTV  AE++KRR+AGLHQ T +    + ++W+ L     +G  P      L   
Sbjct: 70  CGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPGEPAASLSVL 129

Query: 51  RHVSMITITLSKKDLDTSSTGYQPPLP 77
           ++V  + I LSK  LD    GYQPP P
Sbjct: 130 KNVPGLAILLSKDALDPRQPGYQPPNP 156

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL----------EEGLLPLETT 50
            GRA  KTV  AE++KRR+AGLHQ T +    + ++W+ L           +    L   
Sbjct: 70  CGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVL 129

Query: 51  RHVSMITITLSKKDLDTSSTGYQPP 75
           ++V  + I LSK  LD    GYQPP
Sbjct: 130 KNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL----------EEGLLPLETT 50
            GRA  KTV  AE++KRR+AGLHQ T +    + ++W+ L           +    L   
Sbjct: 70  CGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVL 129

Query: 51  RHVSMITITLSKKDLDTSSTGYQPP 75
           ++V  + I LSK  LD    GYQPP
Sbjct: 130 KNVPSLAILLSKDALDPRQLGYQPP 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.142    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,825,562
Number of Sequences: 539616
Number of extensions: 5615508
Number of successful extensions: 51684
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 759
Number of HSP's that attempted gapping in prelim test: 18202
Number of HSP's gapped (non-prelim): 11970
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
449448448	254	PREDICTED: ribonuclease P protein subuni	0.844	0.661	0.817	9e-52
357464479	351	Ribonuclease P protein subunit p25 [Medi	0.819	0.464	0.798	1e-51
255585648	257	conserved hypothetical protein [Ricinus	1.0	0.774	0.682	4e-48
356516323	241	PREDICTED: alba-like protein C9orf23 hom	0.824	0.680	0.778	8e-48
356509014	261	PREDICTED: uncharacterized protein LOC10	0.824	0.628	0.775	6e-47
296082548	282	unnamed protein product [Vitis vinifera]	0.994	0.702	0.647	5e-46
357464475	245	Ribonuclease P protein subunit p25 [Medi	0.798	0.648	0.674	7e-46
225438471	255	PREDICTED: uncharacterized protein LOC10	0.994	0.776	0.647	1e-45
84468342	248	hypothetical protein [Trifolium pratense	0.849	0.681	0.776	2e-45
225460634	259	PREDICTED: uncharacterized protein LOC10	0.643	0.494	0.837	2e-44

>gi|449448448|ref|XP_004141978.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus] gi|449497693|ref|XP_004160481.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus]

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 146/170 (85%), Gaps = 2/170 (1%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTVMIAELIKRRI GLHQNT+IGSTDITDMWEPLEEGLLPLETTRHVSM++ITL
Sbjct: 54  MGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSMVSITL 113

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGD 120
           SKK+LDTSSTGYQ PLP DQVKPWNEFEDEG+GSPR RGRGRG           YNG  +
Sbjct: 114 SKKELDTSSTGYQSPLPVDQVKPWNEFEDEGDGSPRIRGRGRGRGRGRGRGN--YNGPSE 171

Query: 121 YNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV 170
           Y  DGWDGGRGFG RGRGRGRGR+FRGRG GYG QSGGYYDYGE  APPV
Sbjct: 172 YQGDGWDGGRGFGPRGRGRGRGRAFRGRGRGYGRQSGGYYDYGEPMAPPV 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464479|ref|XP_003602521.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491569|gb|AES72772.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/164 (79%), Positives = 136/164 (82%), Gaps = 1/164 (0%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTVMI ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITL
Sbjct: 159 MGRAINKTVMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITL 218

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGD 120
           SKK+LDTSSTGYQPPLPADQVKP NE+EDEGEGSPR RGRGRG         G YNG G 
Sbjct: 219 SKKELDTSSTGYQPPLPADQVKPLNEYEDEGEGSPRMRGRGRGRGRGRGRGRGMYNG-GM 277

Query: 121 YNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGE 164
              DGWDGGRG+GGRGRGR  G +FRGRG GYG+Q  G YDYGE
Sbjct: 278 EYGDGWDGGRGYGGRGRGRAWGHAFRGRGRGYGAQPVGQYDYGE 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585648|ref|XP_002533510.1| conserved hypothetical protein [Ricinus communis] gi|223526634|gb|EEF28879.1| conserved hypothetical protein [Ricinus communis]

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 140/205 (68%), Positives = 146/205 (71%), Gaps = 6/205 (2%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTVMIAELIKRR+ GLHQNTSI STDITD WEPLEEGLLPLETTRHVSM+TIT 
Sbjct: 53  MGRAINKTVMIAELIKRRVVGLHQNTSITSTDITDTWEPLEEGLLPLETTRHVSMLTITF 112

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGS-PRGRGRGRGGRGRGRGRGGFYNGAG 119
           SKK+LDTSSTGYQPPLP DQVKP NEFEDEGEGS         G         G +NGAG
Sbjct: 113 SKKELDTSSTGYQPPLPVDQVKPLNEFEDEGEGSLRMRGRGRGGWGRGRGRNRGNFNGAG 172

Query: 120 DYNVDGWD----GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV-GRGR 174
           +YN DGWD          GRGRGR      RGRG G+G QS GYYDYGE EA PV GRG 
Sbjct: 173 EYNGDGWDGGRGYSGRGQGRGRGRFFQGRGRGRGRGFGGQSSGYYDYGESEALPVPGRGH 232

Query: 175 GRGRARGRGRGRNPRSGGPFQAVGA 199
           GR R RGR  GR  RS GP QA  A
Sbjct: 233 GRWRGRGRSGGRGFRSDGPIQASAA 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516323|ref|XP_003526845.1| PREDICTED: alba-like protein C9orf23 homolog [Glycine max]

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 130/167 (77%), Positives = 137/167 (82%), Gaps = 3/167 (1%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTVMIAELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITL
Sbjct: 53  MGRAINKTVMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITL 112

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGD 120
           SKK+LDTSS GYQ PLP DQVKP NE+E+EGEGSP  R RGRG         GFYNG  +
Sbjct: 113 SKKELDTSSAGYQHPLPVDQVKPLNEYEEEGEGSP--RMRGRGRGRGRGRGRGFYNGGME 170

Query: 121 YNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEA 167
           Y  D WDGGRG+GGRGRGR RGR+FRGRG GYG Q  GYYDYGE +A
Sbjct: 171 YG-DDWDGGRGYGGRGRGRARGRAFRGRGRGYGVQPVGYYDYGEYDA 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509014|ref|XP_003523247.1| PREDICTED: uncharacterized protein LOC100792158 [Glycine max]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 138/169 (81%), Gaps = 5/169 (2%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTVMIAELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITL
Sbjct: 53  MGRAINKTVMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITL 112

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGD 120
           SKK+LDTSSTGYQPPLP DQVKP NE+++EGEGSP  R RGRG         GFYNG G 
Sbjct: 113 SKKELDTSSTGYQPPLPVDQVKPLNEYDEEGEGSP--RIRGRGRGRGRGRGRGFYNG-GM 169

Query: 121 YNVDGWDGGRGFGGRGRGRGRGRSF--RGRGWGYGSQSGGYYDYGELEA 167
              DGWDGGRG+GGRGRGR RG +F  RGRG GYG Q  GYYDYGE +A
Sbjct: 170 EYGDGWDGGRGYGGRGRGRARGHAFRGRGRGRGYGVQPVGYYDYGEYDA 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082548|emb|CBI21553.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 132/204 (64%), Positives = 143/204 (70%), Gaps = 6/204 (2%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTVMI+ELIKRRI GLHQNTSIGSTDITDMWEPLE+GLLPLETTRHVSMITITL
Sbjct: 80  MGRAINKTVMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITL 139

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSP-----RGRGRGRGGRGRGRGRGGFY 115
           SKK+LDTSSTGYQPP+P DQVKP NE E EG+ SP             GRG   G GG Y
Sbjct: 140 SKKELDTSSTGYQPPIPVDQVKPLNELEYEGD-SPGMRGRGRGRGRGRGRGNYNGVGGEY 198

Query: 116 NGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRG 175
           N    ++     GGRG G       RGR     G     +SGGYYDYG+ E P  GRGRG
Sbjct: 199 NNGDGWDGGRGFGGRGRGRGRGRGFRGRGRGYGGGDMQYESGGYYDYGDSEVPAQGRGRG 258

Query: 176 RGRARGRGRGRNPRSGGPFQAVGA 199
           R R RGRGRGRN R+ GP QA+ A
Sbjct: 259 RSRGRGRGRGRNFRTEGPPQAIAA 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464475|ref|XP_003602519.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491567|gb|AES72770.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 125/178 (70%), Gaps = 19/178 (10%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTV I ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITL
Sbjct: 53  MGRAINKTVTITELIKRRIVGLHQNTIIGSTDITDTWEPLEEGLLPLETTRHVSMITITL 112

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGD 120
           SKK+LDTSSTGYQPPLPADQVKP NE+E+EGEGSPR RGRGRG         G YNG   
Sbjct: 113 SKKELDTSSTGYQPPLPADQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGRGMYNG--- 169

Query: 121 YNVDGWDGGRGFGGRGRGRGRGRSFRGRGW---------GYGSQSGGYYDYGELEAPP 169
                  G     G   GRG G   RGR W         GYG+Q  GYYD GE +APP
Sbjct: 170 -------GMEYGDGYDGGRGYGGRGRGRAWGRAFRGRGRGYGAQPVGYYDNGEYDAPP 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438471|ref|XP_002277849.1| PREDICTED: uncharacterized protein LOC100254260 [Vitis vinifera] gi|147856397|emb|CAN82465.1| hypothetical protein VITISV_002662 [Vitis vinifera]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/204 (64%), Positives = 143/204 (70%), Gaps = 6/204 (2%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTVMI+ELIKRRI GLHQNTSIGSTDITDMWEPLE+GLLPLETTRHVSMITITL
Sbjct: 53  MGRAINKTVMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITL 112

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSP-----RGRGRGRGGRGRGRGRGGFY 115
           SKK+LDTSSTGYQPP+P DQVKP NE E EG+ SP             GRG   G GG Y
Sbjct: 113 SKKELDTSSTGYQPPIPVDQVKPLNELEYEGD-SPGMRGRGRGRGRGRGRGNYNGVGGEY 171

Query: 116 NGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRG 175
           N    ++     GGRG G       RGR     G     +SGGYYDYG+ E P  GRGRG
Sbjct: 172 NNGDGWDGGRGFGGRGRGRGRGRGFRGRGRGYGGGDMQYESGGYYDYGDSEVPAQGRGRG 231

Query: 176 RGRARGRGRGRNPRSGGPFQAVGA 199
           R R RGRGRGRN R+ GP QA+ A
Sbjct: 232 RSRGRGRGRGRNFRTEGPPQAIAA 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468342|dbj|BAE71254.1| hypothetical protein [Trifolium pratense]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/170 (77%), Positives = 141/170 (82%), Gaps = 1/170 (0%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTV I ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITL
Sbjct: 53  MGRAINKTVTITELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITL 112

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAG- 119
           SKK+LDTSSTGYQPPLPADQVKP NE+E++GEGSPR RGRGRG         G YN  G 
Sbjct: 113 SKKELDTSSTGYQPPLPADQVKPLNEYEEDGEGSPRMRGRGRGRGRGRGRGRGMYNNGGM 172

Query: 120 DYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPP 169
           +Y  DGWDGGRG+GGRGRGR  GR+FRGRG GYG+Q  GYYD GE +APP
Sbjct: 173 EYGGDGWDGGRGYGGRGRGRAWGRAFRGRGRGYGAQPAGYYDNGEYDAPP 222

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460634|ref|XP_002264932.1| PREDICTED: uncharacterized protein LOC100265751 [Vitis vinifera] gi|296081198|emb|CBI18224.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 115/129 (89%), Gaps = 1/129 (0%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVS+I ITL
Sbjct: 53  MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSVIAITL 112

Query: 61  SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGD 120
           SKK+LD SSTGYQPP+PADQV+PW E++ EGEGSP  RGRGR GRGRGRGRG   NG  +
Sbjct: 113 SKKELDISSTGYQPPIPADQVRPWTEYDYEGEGSPAMRGRGRSGRGRGRGRGNNNNGMVE 172

Query: 121 YNVD-GWDG 128
           YN D GWDG
Sbjct: 173 YNGDGGWDG 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2204400	350	AT1G76010 [Arabidopsis thalian	0.477	0.271	0.666	9.4e-27
TAIR|locus:2198551	315	AT1G20220 [Arabidopsis thalian	0.477	0.301	0.656	1.9e-26
TAIR|locus:2077547	405	AT3G07030 [Arabidopsis thalian	0.417	0.204	0.506	3.2e-16
DICTYBASE|DDB_G0281409	369	drpp25 "RNase MRP protein subu	0.407	0.219	0.421	4.8e-11
MGI|MGI:1917211	163	Rpp25l "ribonuclease P/MRP 25	0.371	0.453	0.407	1.1e-09
RGD|1306576	163	Rpp25l "ribonuclease P/MRP 25	0.371	0.453	0.407	1.1e-09
UNIPROTKB|Q8N5L8	163	RPP25L "Ribonuclease P protein	0.371	0.453	0.394	2.2e-09
UNIPROTKB|F1SEB9	163	RPP25L "Uncharacterized protei	0.371	0.453	0.394	2.2e-09
UNIPROTKB|E2R227	163	LOC486757 "Uncharacterized pro	0.371	0.453	0.394	2.9e-09
UNIPROTKB|E2RC74	163	C11H9orf23 "Uncharacterized pr	0.371	0.453	0.394	2.9e-09

TAIR|locus:2204400 AT1G76010 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 64/96 (66%), Positives = 70/96 (72%)

Query:     1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITL 60
             MGRAINKTV I ELIKRRI  LHQNTSIGSTDITD W           TTRHVSMITITL
Sbjct:    53 MGRAINKTVTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITL 112

Query:    61 SKKDLDTSSTGYQPPLPADQVKPWNEFEDEG-EGSP 95
             SK +L+TSS GYQ P+P + VKP  + + EG EGSP
Sbjct:   113 SKIELNTSSVGYQCPIPIELVKPMGDIDYEGREGSP 148

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2198551 AT1G20220 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 63/96 (65%), Positives = 70/96 (72%)

Query:     1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITL 60
             MGRAINK+V I ELIKRRI GLHQ TSIGSTDITD W           TTRHVSMITITL
Sbjct:    53 MGRAINKSVTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITL 112

Query:    61 SKKDLDTSSTGYQPPLPADQVKPWNEFEDEGE-GSP 95
             SK+ L+TSS GYQ P+P + VKP  E + EG+ GSP
Sbjct:   113 SKEQLNTSSVGYQCPIPIEMVKPLAEIDYEGQDGSP 148

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2077547 AT3G07030 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 42/83 (50%), Positives = 55/83 (66%)

Query:     1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITL 60
             MG+AI+KTV I+E++K +I GLHQ+ +I S  ITD+W            TRHVSMI+ITL
Sbjct:    53 MGQAISKTVAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITL 112

Query:    61 SKKDLDTSSTGYQPPLPADQVKP 83
             S  +L+  S GYQ P  +DQ KP
Sbjct:   113 SLSELNKDSPGYQAPAQSDQSKP 135

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0281409 drpp25 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 159 (61.0 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 35/83 (42%), Positives = 48/83 (57%)

Query:     3 RAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSK 62
             + I+K +  AE+IK R+ GLHQ T IG+T+I   +            ++  + I ITLSK
Sbjct:    55 KMISKAIFTAEIIKLRVPGLHQITEIGTTEIVTQYMPKEEGLDKVEISKKSAFIKITLSK 114

Query:    63 KDLDTSSTGYQPPLPAD--QVKP 83
               LDT++ GYQPPLP    Q KP
Sbjct:   115 TPLDTTNPGYQPPLPESETQKKP 137

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1917211 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/76 (40%), Positives = 38/76 (50%)

Query:     2 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 59
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:    60 LSKKDLDTSSTGYQPP 75
             LS+  LD S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1306576 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/76 (40%), Positives = 38/76 (50%)

Query:     2 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 59
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:    60 LSKKDLDTSSTGYQPP 75
             LS+  LD S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8N5L8 RPP25L "Ribonuclease P protein subunit p25-like protein" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query:     2 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 59
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120

Query:    60 LSKKDLDTSSTGYQPP 75
             LS+  LD +  GYQPP
Sbjct:   121 LSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SEB9 RPP25L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query:     2 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 59
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:    60 LSKKDLDTSSTGYQPP 75
             LS+  LD +  GYQPP
Sbjct:   121 LSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R227 LOC486757 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query:     2 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 59
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVL 120

Query:    60 LSKKDLDTSSTGYQPP 75
             LS+  LD +  GYQPP
Sbjct:   121 LSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RC74 C11H9orf23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query:     2 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 59
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVL 120

Query:    60 LSKKDLDTSSTGYQPP 75
             LS+  LD +  GYQPP
Sbjct:   121 LSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019343001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (241 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam01918	67	pfam01918, Alba, Alba	3e-08
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	3e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	7e-05
pfam12328	108	pfam12328, Rpp20, Rpp20 subunit of nuclear RNase M	1e-04
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	2e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	6e-04
PTZ00034	124	PTZ00034, PTZ00034, 40S ribosomal protein S10; Pro	0.001
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.002
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	0.002
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	0.002

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 48.4 bits (116), Expect = 3e-08
 Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 1  MGRAINKTVMIAELIKRRI-AGLHQNTSIGST 31
          +GRAI+K V +AE++KRR   GLHQ   I ST
Sbjct: 35 LGRAISKAVSVAEILKRRFLKGLHQVNVITST 66

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 20/52 (38%), Positives = 20/52 (38%)

Query: 98  RGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRG 149
              G  G GRG GRGG   G       G   G G G    G G GR   G G
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGG 52

Length = 293

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 28/105 (26%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 88  EDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRG 147
           ED    + RG    R  RGR        +     +    + GR  GG  RGR R R  R 
Sbjct: 179 EDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRRE-ERGRRDGGDRRGRRRRRD-RR 236

Query: 148 RGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGG 192
              G  ++       G+      GR   R R R R   R    G 
Sbjct: 237 DARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGN 281

Length = 672

>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITD---MWEPLEEGLLPLETTRHVSMIT 57
           MG+AI K + +A   +R       +   G+ ++ D     E  ++   P    R VS + 
Sbjct: 48  MGKAIEKALSLALHFQRE-KNYKVDVRTGTVEVVDEIVEDEDDDDDEEPETRKRTVSAVE 106

Query: 58  I 58
           +
Sbjct: 107 V 107

The nuclear RNase P of Saccharomyces cerevisiae is made up of at least nine protein subunits; Pop1, Pop3, Pop4, Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these subunits seem to be present also in the RNase MRP, with the exception of Rpr2 (Rpp21) which is unique to RNase P. Human nuclear RNase P and MRP appear to contain at least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25, Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although there is recent evidence that not all of these subunits are shared between P and MRP. Archaeal RNase P has at least four protein subunits homologous to eukaryotic RNase P/MRP proteins. In the yeast RNase P, Pop6 and Pop7 (the Rpp20 homologue) interact with each other and they are both interaction partners of Pop4; in the human MRP Rpp25 and Rpp20 interact with each other and Rpp25 binds to Rpp29 (Pop4). Length = 108

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 17/52 (32%)

Query: 91  GEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRG 142
           GEG  +      GGRGR RGRG                  G GGRGRG  RG
Sbjct: 507 GEGISKVGQSY-GGRGRTRGRGR----------------GGGGGRGRGYNRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 29/68 (42%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 91  GEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGW 150
           G G   GRG GRGG G G   GG              G  G  G GRGRGRG    GRG 
Sbjct: 3   GGGFGGGRGGGRGGGGGGGRGGG--------------GRGGGRGGGRGRGRGGGGGGRGG 48

Query: 151 GYGSQSGG 158
           G G   G 
Sbjct: 49  GGGGGPGK 56

Length = 293

>gnl|CDD|173331 PTZ00034, PTZ00034, 40S ribosomal protein S10; Provisional

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 17/37 (45%), Positives = 18/37 (48%)

Query: 76  LPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRG 112
            PA   K    FE + E      GRG  GRGRG GRG
Sbjct: 88  FPATHKKKSVNFERKTEEEGSRGGRGGRGRGRGYGRG 124

Length = 124

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 18/65 (27%), Positives = 20/65 (30%)

Query: 85  NEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRS 144
            E     +G  R   R R  R   RG     +       DG   G   G R R R R   
Sbjct: 215 REERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGR 274

Query: 145 FRGRG 149
             G G
Sbjct: 275 RGGDG 279

Length = 672

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 12/64 (18%)

Query: 2  GRAINKTVMIAELIKRR-IAGLH-QNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITIT 59
          GRAI+K V +AE+++ R +  +  +   IG+ ++T      E+G        +VS I I 
Sbjct: 38 GRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTS-----EDG-----RESNVSTIEIV 87

Query: 60 LSKK 63
          L KK
Sbjct: 88 LEKK 91

Length = 91

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 19/65 (29%), Positives = 26/65 (40%)

Query: 128 GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRN 187
             RG GGRG+G GRG+       G G          E  +  +G  +  G  + R R R 
Sbjct: 392 QQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRK 451

Query: 188 PRSGG 192
           P +  
Sbjct: 452 PAAAQ 456

Length = 456

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG2567	179	consensus Uncharacterized conserved protein [Funct	100.0
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.23
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.17
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.16
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	98.61
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	97.57
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	96.33
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	95.96
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	90.1

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=232.31  Aligned_cols=92  Identities=51%  Similarity=0.770  Sum_probs=88.2

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCCCCCCCCCCCCCCCCcCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQ   80 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~elD~ss~GYQ~P~p~~~   80 (199)
                      ||+||+|+|+||||||||+++|||+|.|.+++|+|+|+|++|||++|+++||||+|+|+||++|||++++|||+|.|...
T Consensus        53 ~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~  132 (179)
T KOG2567|consen   53 SGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPH  132 (179)
T ss_pred             CCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCccccCCC
Q 029063           81 VKPWNEFEDEGE   92 (199)
Q Consensus        81 vk~~~E~e~~~~   92 (199)
                      .+.+...++++.
T Consensus       133 p~~~~~~p~~~~  144 (179)
T KOG2567|consen  133 PRSQPRHPYSPR  144 (179)
T ss_pred             CCCcccCCcccc
Confidence            888888877653

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.23  E-value=2e-11  Score=92.91  Aligned_cols=55  Identities=36%  Similarity=0.431  Sum_probs=41.6

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK   63 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~   63 (199)
                      ||+||+|||+||||||+||-..   .++..++|..+-...++|     .+++||+|+|+|+++
T Consensus        37 ~G~aIskAV~vaEilk~r~~~~---v~v~~I~i~se~i~~~~g-----~~~~VS~IEI~l~k~   91 (91)
T PRK04015         37 RGRAISKAVDVAEIVRNRFLPD---VEIKEIKIGTEEVTSEDG-----RESNVSTIEIVLEKK   91 (91)
T ss_pred             eccccchhhhHHHHHHHhccCC---eEEEEEEeccEEeecCCC-----cEEEEEEEEEEEecC
Confidence            6999999999999999999433   446666665443333444     678999999999874

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.17  E-value=5.8e-11  Score=89.72  Aligned_cols=55  Identities=40%  Similarity=0.526  Sum_probs=45.6

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK   63 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~   63 (199)
                      .|+||||||++|||||+||  |+ ..+|+.++|.++-...++|     .+++||+|+|+|.+.
T Consensus        37 RGraIskAVDvaeivRnrf--~p-~v~ik~Iki~se~~~~~~g-----r~~~VS~IeI~L~k~   91 (91)
T COG1581          37 RGRAISKAVDVAEIVRNRF--IP-DVQIKDIKIGTEELEGEDG-----RTRNVSTIEIVLAKK   91 (91)
T ss_pred             cchhhHhhHhHHHHHHHhc--CC-CceEEEEEecceeeecCCC-----ceeeEEEEEEEEecC
Confidence            3899999999999999999  77 5688888887665555554     578999999999873

>TIGR00285 DNA-binding protein Alba

Probab=99.16  E-value=7.8e-11  Score=88.97  Aligned_cols=54  Identities=33%  Similarity=0.383  Sum_probs=43.5

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK   62 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk   62 (199)
                      ||+||||||+||||||+||...+   ++..++|..+-.+.++|     .+++||+|+|+|++
T Consensus        34 rG~aIskAVdvaeiik~r~~~~v---~v~~I~i~te~~~~~~G-----~~~~VStIEI~l~~   87 (87)
T TIGR00285        34 RGRAISRAVDVAEIVRNRFIPDI---KIKKIKIGTEEIKSEQG-----REVNVSTIEIVLAK   87 (87)
T ss_pred             ecchhhhHHHHHHHHHHhccCCc---eEEEEEeccEEeecCCC-----ceeeEEEEEEEEeC
Confidence            79999999999999999994433   57777776665556665     77889999999975

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=98.61  E-value=3.4e-08  Score=70.03  Aligned_cols=31  Identities=48%  Similarity=0.713  Sum_probs=28.0

Q ss_pred             CchhhHHHHHHHHHHHHhhc-CCccceeeEEE
Q 029063            1 MGRAINKTVMIAELIKRRIA-GLHQNTSIGST   31 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~-gLhQ~t~i~~~   31 (199)
                      ||+||+|||+||||||+++. +|||++.+.++
T Consensus        38 ~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~t   69 (70)
T PF01918_consen   38 RGKAISKAISVAEILKRRFGEGLYQVNKITST   69 (70)
T ss_dssp             ECCHHHHHHHHHHHHHHHTSTTTEEEEEEEEE
T ss_pred             EcHHHHHHHHHHHHHHHhhcCCCEEEEEEecc
Confidence            68999999999999999994 89999988764

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=97.57  E-value=0.00015  Score=59.25  Aligned_cols=57  Identities=30%  Similarity=0.421  Sum_probs=36.9

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCC------------------CCCCCCceeeeeeEEEE
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLE------------------EGLLPLETTRHVSMITI   58 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~e------------------EGL~~le~tR~Vs~I~I   58 (199)
                      ||+||.||+.||--|++.- ++.=.+...++.+.|..++.+                  +..++...+|+||+|+|
T Consensus        69 tGkAIeKal~la~~Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv  143 (144)
T PF12328_consen   69 TGKAIEKALSLALWFQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEV  143 (144)
T ss_dssp             EGGGHHHHHHHHHHHHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEE
Confidence            8999999999999998775 454456677777777776542                  33456668999999998

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=96.33  E-value=0.017  Score=59.63  Aligned_cols=9  Identities=44%  Similarity=0.549  Sum_probs=3.3

Q ss_pred             CCCCCCCCC
Q 029063          145 FRGRGWGYG  153 (199)
Q Consensus       145 ~~G~g~Gy~  153 (199)
                      |++-++|||
T Consensus      1235 frnnggGdy 1243 (1282)
T KOG0921|consen 1235 FRNNGGGDY 1243 (1282)
T ss_pred             cccCCCCCC
Confidence            333333433

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=95.96  E-value=0.043  Score=56.72  Aligned_cols=21  Identities=29%  Similarity=0.642  Sum_probs=9.8

Q ss_pred             CCCCCCC-CCCCCCCCCCCCCC
Q 029063          144 SFRGRGW-GYGSQSGGYYDYGE  164 (199)
Q Consensus       144 g~~G~g~-Gy~~~~~~~~~~~~  164 (199)
                      ||+|..+ ||-+..+++|.++.
T Consensus      1226 GyrGvsrgGfrnnggGdyrnpg 1247 (1282)
T KOG0921|consen 1226 GYRGVSRGGFRNNGGGDYRNPG 1247 (1282)
T ss_pred             CCccccCCccccCCCCCCCCCC
Confidence            4444444 35444455554433

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=90.10  E-value=2.7  Score=39.69  Aligned_cols=9  Identities=33%  Similarity=0.497  Sum_probs=3.6

Q ss_pred             HHHHHHHHh
Q 029063           10 MIAELIKRR   18 (199)
Q Consensus        10 ~vAEIlKrR   18 (199)
                      +||-+|-.|
T Consensus       264 dvahLLaAr  272 (465)
T KOG3973|consen  264 DVAHLLAAR  272 (465)
T ss_pred             HHHHHHHhh
Confidence            344444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.66
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.51
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.5
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.49
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.46
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.3
1vm0_A	130	Unknown protein; structural genomics, protein stru	98.94
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	97.88
3iab_A	158	Ribonucleases P/MRP protein subunit POP6; RNAse P,	97.35
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	91.9

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.66  E-value=6.3e-17  Score=123.82  Aligned_cols=60  Identities=33%  Similarity=0.464  Sum_probs=53.4

Q ss_pred             CchhhHHHHHHHHHHHHhh-cCCc-cceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCCCCC
Q 029063            1 MGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLD   66 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi-~gLh-Q~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~elD   66 (199)
                      ||+||+|||+||||||+|| ++|| |.++|++.++.|+|+   +|++   ++|+||+|+|+|+++|..
T Consensus        40 ~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~g~~---~~r~vS~IeI~Lsk~~~~  101 (102)
T 2h9u_A           40 RGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---EGQT---RTRRVSSIEICLEKAGES  101 (102)
T ss_dssp             ETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---TSCE---EEEEEEEEEEEEEECSSC
T ss_pred             echhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---CCcc---ceeEeeeEEEEEEccCCC
Confidence            6999999999999999999 8999 999999999998864   4432   789999999999998753

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.51  E-value=2.5e-14  Score=107.59  Aligned_cols=55  Identities=35%  Similarity=0.437  Sum_probs=50.1

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK   63 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~   63 (199)
                      ||+||||||+||||||+||  |. .++|++++|.++|.+.++|     .+++||+|+|+|+++
T Consensus        37 ~G~aIskAVdvaei~k~R~--~~-~v~v~~I~I~se~~~~e~G-----~~r~VS~IeI~L~k~   91 (91)
T 3toe_A           37 RGIAISRAVDVAEIVRNRF--IP-DIQIENIDICTEEIIGNEG-----TATNVSAIEIQLRKD   91 (91)
T ss_dssp             ETTHHHHHHHHHHHHHHHT--CT-TCEEEEEEEEEEEEECTTS-----SEEEEEEEEEEEEC-
T ss_pred             ehhHHHHHHHHHHHHHHhc--cC-CcEEEEEEeeeEEeecCCC-----ceeEeeEEEEEEECC
Confidence            6999999999999999999  54 4889999999999999987     899999999999974

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.50  E-value=2e-14  Score=107.34  Aligned_cols=52  Identities=35%  Similarity=0.645  Sum_probs=45.8

Q ss_pred             CchhhHHHHHHHHHHHHhh-cCCc-cceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccC
Q 029063            1 MGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK   62 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi-~gLh-Q~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk   62 (199)
                      ||+||+|||+||||||+|| ++|| |.++|++.++.+     ++|     .+|+||+|+|+|++
T Consensus        36 ~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~g-----~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           36 RGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQG-----RRSNVSTIEIVLAK   89 (89)
T ss_dssp             ETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BTT-----BCCEEEEEEEEEEC
T ss_pred             ecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CCC-----cEEEeeEEEEEEEC
Confidence            6999999999999999999 8999 888888887654     454     78999999999985

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.49  E-value=1.8e-14  Score=107.21  Aligned_cols=52  Identities=37%  Similarity=0.632  Sum_probs=42.1

Q ss_pred             CchhhHHHHHHHHHHHHhh-cCCc-cceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccC
Q 029063            1 MGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK   62 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi-~gLh-Q~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk   62 (199)
                      ||+||+|||+||||||+|| ++|| |.++|++.++.+     ++|     .+|+||+|+|+|++
T Consensus        34 ~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~-----e~g-----~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           34 RGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-----PDG-----REVNVSTIEIVLAK   87 (87)
T ss_dssp             EGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------------CCCEEEEEEEEEC
T ss_pred             echHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEc-----CCC-----cEEEeeEEEEEEEC
Confidence            6999999999999999999 7899 999999988776     344     78899999999985

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.46  E-value=5.9e-14  Score=106.42  Aligned_cols=53  Identities=34%  Similarity=0.548  Sum_probs=46.7

Q ss_pred             CchhhHHHHHHHHHHHHhhcC--C-ccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCC
Q 029063            1 MGRAINKTVMIAELIKRRIAG--L-HQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK   63 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~g--L-hQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~   63 (199)
                      +|+||+|||+||||||+||.+  | ||.++|++.++.+     ++|     .+|+||+|+|+|+++
T Consensus        42 ~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~-----e~G-----~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           42 RGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS-----QDG-----RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             ETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE-----TTS-----CEEEEEEEEEEEEEC
T ss_pred             echHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec-----CCC-----cEEEeeEEEEEEEcC
Confidence            699999999999999999955  8 7999999998876     444     789999999999974

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.30  E-value=1.5e-12  Score=97.31  Aligned_cols=50  Identities=24%  Similarity=0.313  Sum_probs=39.8

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK   63 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~   63 (199)
                      ||+||+|||+||||||+||.+++|   |.+++|..+     +     ..+|+||+|+|+|+++
T Consensus        39 ~G~aIskAVdvaeilk~R~~~~~~---i~~i~i~se-----~-----~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           39 TGREISKAVDVYNSLKDRLGDGVQ---LVNVQTGSE-----V-----RDRRRISYILLRLKRV   88 (89)
T ss_dssp             ETTHHHHHHHHHHHHHHHHGGGEE---EEEEEEEEE-----E-----ETTEEEEEEEEEEEEC
T ss_pred             echHHHHHHHHHHHHHHhccCceE---EEEEEeccc-----c-----CcceEeeeEEEEEEec
Confidence            699999999999999999977655   555555432     1     3689999999999974

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=98.94  E-value=6.7e-10  Score=88.26  Aligned_cols=53  Identities=28%  Similarity=0.363  Sum_probs=36.8

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceee--EEEeccceeeeCCCCCCCCceeeeeeEEEEEccCCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSI--GSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKD   64 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i--~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~e   64 (199)
                      ||+||+|||+||||||+|+  |+++++|  ++.++.+.     .+    ....+||.|+|+|++.+
T Consensus        54 ~G~AIskAV~VAEiLkrr~--l~~ikkI~t~t~~i~~~-----~~----~r~v~~skIEI~L~k~~  108 (130)
T 1vm0_A           54 LGMAIATVVTVTEILKNNG--FAVEKKIMTSIVDIKDD-----AR----GRPVQKAKIEITLVKSE  108 (130)
T ss_dssp             EGGGHHHHHHHHHHHHHTT--SEEEEEEEEEEEEEC---------------CEEEEEEEEEEEECT
T ss_pred             chHHHHHHHHHHHHHHhcC--cceEEEEEeeeEEeccC-----CC----CcccccceEEEEEEecC
Confidence            6999999999999999998  6665544  33333321     11    14456799999999865

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=97.88  E-value=2.4e-05  Score=62.80  Aligned_cols=60  Identities=15%  Similarity=0.147  Sum_probs=44.7

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCC------------CCCCceeeeeeEEEEEcc
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEG------------LLPLETTRHVSMITITLS   61 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEG------------L~~le~tR~Vs~I~ItLS   61 (199)
                      ||+||.||++||-.|..+. +|.-....+++.+.|..+|.++-            .++...+|+||+|+|-+.
T Consensus        68 mGkAIeKal~lAl~fq~~~-~~~V~V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy  139 (140)
T 3iab_B           68 MGKAVEKTLALGCHFQDQK-NKKIEVYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY  139 (140)
T ss_dssp             EGGGHHHHHHHHHHHHHTT-CCCEEEEEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred             chHHHHHHHHHHHHHhhcC-CEEEEEEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence            7999999999999999874 57666778888888888776653            456778999999999864

>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00037  Score=56.77  Aligned_cols=58  Identities=22%  Similarity=0.236  Sum_probs=43.6

Q ss_pred             chhhHHHHHHHHHHHHhhc----CCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCCC
Q 029063            2 GRAINKTVMIAELIKRRIA----GLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKD   64 (199)
Q Consensus         2 G~AIsKAV~vAEIlKrRi~----gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~e   64 (199)
                      |..|.|+++|.||+|+.+.    .|||++++.+.....+   ..+  +.++.+.+||.+-+.+++++
T Consensus        85 g~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~---grN--ELle~r~~vPILi~~i~~~~  146 (158)
T 3iab_A           85 GPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKRE---GRN--ELQEERLKVPILVTMVSDSE  146 (158)
T ss_dssp             GGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC------------CCCCEEEEEEEEEEESSS
T ss_pred             ChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCc---ccc--HHHHhhcCCCEEEEEEeccc
Confidence            7889999999999999872    4999999998754332   111  45667788999998888876

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=91.90  E-value=0.03  Score=42.98  Aligned_cols=7  Identities=14%  Similarity=0.520  Sum_probs=2.7

Q ss_pred             eeeEEEE
Q 029063           52 HVSMITI   58 (199)
Q Consensus        52 ~Vs~I~I   58 (199)
                      ++..|.|
T Consensus        54 ~lg~v~I   60 (119)
T 1b34_A           54 QLETLSI   60 (119)
T ss_dssp             EEEEEEE
T ss_pred             EcceEEE
Confidence            3344433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	6e-21
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	2e-18
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	3e-17
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	6e-13
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	1e-09

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score = 80.5 bits (199), Expect = 6e-21
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 1  MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           GRAI+K V   E+++ R   L     I    +       ++G         VS I I +
Sbjct: 34 RGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVVTSQDG-----RQSRVSTIEIAI 86

Query: 61 SKK 63
           KK
Sbjct: 87 RKK 89

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 74.4 bits (183), Expect = 2e-18
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 1  MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           GRAI++ V +AE+++ R         +    I       E+G        +VS I I L
Sbjct: 34 RGRAISRAVDVAEIVRNR---FMPGVKVKEIKIDTEELESEQG-----RRSNVSTIEIVL 85

Query: 61 SK 62
          +K
Sbjct: 86 AK 87

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 71.3 bits (175), Expect = 3e-17
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 1  MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           G+AINK V +AE+I+ R     ++  I   +I        +G        +VS I I L
Sbjct: 34 RGKAINKAVDVAEMIRNR---FIKDIKIKKIEIGTDKVKNPDG-----REVNVSTIEIVL 85

Query: 61 SK 62
          +K
Sbjct: 86 AK 87

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.2 bits (146), Expect = 6e-13
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 1  MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
          +G AI   V + E++K     + +       DI D                  + I ITL
Sbjct: 36 LGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDAR---------GRPVQKAKIEITL 86

Query: 61 SKKD 64
           K +
Sbjct: 87 VKSE 90

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 13/63 (20%)

Query: 1  MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL 60
           GR I+K V +   +K R+    Q  ++ +          E         R +S I + L
Sbjct: 36 TGREISKAVDVYNSLKDRLGDGVQLVNVQTGS--------EVR-----DRRRISYILLRL 82

Query: 61 SKK 63
           + 
Sbjct: 83 KRV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.7
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.57
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.54
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.22
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	98.95

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.70  E-value=8.2e-18  Score=124.34  Aligned_cols=56  Identities=30%  Similarity=0.441  Sum_probs=53.6

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK   63 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~   63 (199)
                      ||+||||||+||||||+||  |||.++|.+++|.++|.|.++|     .+|+||+|+|+|+++
T Consensus        34 rG~aIskAVdVaEiik~R~--l~~~~~i~~i~I~se~~~~~~G-----~~r~VS~IeI~L~kk   89 (89)
T d2bkya1          34 RGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK   89 (89)
T ss_dssp             ETTHHHHHHHHHHHHHHHT--STTTEEEEEEEEEEEEEEETTS-----CEEEEEEEEEEEEEC
T ss_pred             ehhhhHHHHHHHHHHHHhc--ccCceEEEEEEeccEEeecCCC-----cEEEEEEEEEEEEcC
Confidence            6999999999999999999  9999999999999999999998     789999999999975

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.57  E-value=1.5e-15  Score=111.61  Aligned_cols=54  Identities=31%  Similarity=0.442  Sum_probs=50.4

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK   62 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk   62 (199)
                      ||+||||||+||||||+||   ||.++|.+++|.++|+|.++|     .+|+||+|+|+|++
T Consensus        34 rG~aIs~AVdVaEi~k~r~---~~~~~i~~i~i~se~~~~e~g-----~~r~VS~IeI~L~K   87 (87)
T d1nfja_          34 RGRAISRAVDVAEIVRNRF---MPGVKVKEIKIDTEELESEQG-----RRSNVSTIEIVLAK   87 (87)
T ss_dssp             ETTHHHHHHHHHHHHHHHT---CTTCEEEEEEEEEEECCCBTT-----BCCEEEEEEEEEEC
T ss_pred             ehhHHHHHHHHHHHHHHhc---cCCcEEEEEEEccEEEecCCC-----ceeEEEEEEEEEeC
Confidence            6999999999999999994   788999999999999999987     67899999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=2.5e-15  Score=110.40  Aligned_cols=54  Identities=35%  Similarity=0.393  Sum_probs=42.1

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK   62 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk   62 (199)
                      ||+||||||+||||||+||...+   +|.+++|.++|+|.++|     .+|+||+|+|+|++
T Consensus        34 rG~aIsrAVdVaEiik~R~~~~~---~i~~i~i~se~~~~~~g-----~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          34 RGKAINKAVDVAEMIRNRFIKDI---KIKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK   87 (87)
T ss_dssp             EGGGHHHHHHHHHHHHHHTCTTC---EEEEEEEEEEC------------CCCEEEEEEEEEC
T ss_pred             cchhhhHHHHHHHHHHHhccCCe---EEEEEEecceEEecCCC-----ceeEEEEEEEEEeC
Confidence            69999999999999999985554   57888999999999987     78999999999986

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.22  E-value=2.8e-12  Score=93.76  Aligned_cols=50  Identities=24%  Similarity=0.317  Sum_probs=40.2

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK   63 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~   63 (199)
                      ||+||||||+||||||+||.++||+++|   +|.++     +     ..+++||+|+|+|+++
T Consensus        36 rG~aIskAVdVaEiir~R~~~~v~i~~I---~i~sE-----~-----~~~r~VS~IeI~l~k~   85 (86)
T d2bkyx1          36 TGREISKAVDVYNSLKDRLGDGVQLVNV---QTGSE-----V-----RDRRRISYILLRLKRV   85 (86)
T ss_dssp             ETTHHHHHHHHHHHHHHHHGGGEEEEEE---EEEEE-----E-----ETTEEEEEEEEEEEEC
T ss_pred             echhhHHHHHHHHHHHHhccCCeEEEEE---Eeccc-----c-----CCceEEEEEEEEEEec
Confidence            6999999999999999999888885554   44433     2     2577899999999874

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.95  E-value=2.8e-10  Score=84.85  Aligned_cols=55  Identities=25%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             CchhhHHHHHHHHHHHHhhcCCccceeeEEEeccceeeeCCCCCCCCceeeeeeEEEEEccCCC
Q 029063            1 MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKD   64 (199)
Q Consensus         1 mG~AIsKAV~vAEIlKrRi~gLhQ~t~i~~~~i~d~wEP~eEGL~~le~tR~Vs~I~ItLSk~e   64 (199)
                      ||+||++||+||||||+|+..+++.+++++.+++++-    +     ..+++||.|+|+|.+.+
T Consensus        36 ~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~----~-----gr~~~vs~IEI~L~K~~   90 (99)
T d1vm0a_          36 LGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDA----R-----GRPVQKAKIEITLVKSE   90 (99)
T ss_dssp             EGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC---------------CEEEEEEEEEEEECT
T ss_pred             cHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCC----C-----CcccccceEEEEEeeCc
Confidence            6999999999999999999778887777777765421    1     25778999999999864