Citrus Sinensis ID: 029068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEcccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHcccccccccHHcccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
mvkhvvekpaersdsrykgvrkrkwgkyvseirlpnsrariwlgSYDTAEKAARAFDAALFCLrgrsakfnfpdnppdisggrslkpSEIQAVAAQfanseplrsqspeqsVSELQTeylspsiseatvqldsdgvfdgSLLDLLTasssnnypseygifpgfddlsndiftpqlpavdfadenfdglllnqdsflwnf
Flexible Loop (DISEMBL)
mvkhvvekpaersdsrykgvrkrkwgkyvseirlpnsrariWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF
Low Complexity Region (SEG)
MVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF
Disordered region (IsUnstruct)
********************RKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKF***************************************************************DGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLW**
Disordered Region (DISOPRED)
*******************VRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNP**************************************************************************NNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF
Disordered Region (DISEMBL)
MVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA******************TEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF
Disordered Region (DISPRO)
************SDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGG**L**SEIQAVAAQFANS**************************************GSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q84QC2	185	Ethylene-responsive trans	yes	no	0.884	0.951	0.527	7e-45
Q9S7L5	195	Ethylene-responsive trans	no	no	0.919	0.938	0.488	3e-39
Q9C591	216	Ethylene-responsive trans	no	no	0.467	0.430	0.726	2e-34
Q6NLD5	187	Ethylene-responsive trans	no	no	0.422	0.449	0.574	2e-22
Q9SFE4	230	Ethylene-responsive trans	no	no	0.854	0.739	0.393	9e-22
Q8W3M3	150	Ethylene-responsive trans	no	no	0.371	0.493	0.580	5e-19
Q9SW63	196	Ethylene-responsive trans	no	no	0.366	0.372	0.567	1e-18
Q9SIE4	261	Ethylene-responsive trans	no	no	0.557	0.425	0.423	2e-18
Q1ECI2	192	Ethylene-responsive trans	no	no	0.376	0.390	0.533	2e-18
Q9SVQ0	388	Ethylene-responsive trans	no	no	0.386	0.198	0.493	6e-18

>sp|Q84QC2|ERF17_ARATH Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1

 Score =  179 bits (455), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 130/203 (64%), Gaps = 27/203 (13%)

Query: 6   VEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRG 65
           +E  +    S+YKGVRKRKWGK+VSEIRLPNSR RIWLGSYDT EKAARAFDAAL+CLRG
Sbjct: 1   MEGSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRG 60

Query: 66  RSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSIS 125
            +AKFNFPDNPP ISGGR+L  SEI+  AA+FANS      S   +  E++ E       
Sbjct: 61  NNAKFNFPDNPPVISGGRNLSRSEIREAAARFANS--AEDDSSGGAGYEIRQE------- 111

Query: 126 EATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSN----DIFTPQL-PAVDF 180
            A+  +D D  F    L +L    S N+ SE+G+FPGFDD S+    D F  QL P  D+
Sbjct: 112 SASTSMDVDSEF----LSMLPTVGSGNFASEFGLFPGFDDFSDEYSGDRFREQLSPTQDY 167

Query: 181 ---ADENF-DGLLLNQDSFLWNF 199
               +E + DG +     FLWNF
Sbjct: 168 YQLGEETYADGSM-----FLWNF 185

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7L5|ERF18_ARATH Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/211 (48%), Positives = 128/211 (60%), Gaps = 28/211 (13%)

Query: 1   MVKHVVEKPAERSD----SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAF 56
           MVK  +++  ++ +    S+YKGVRKRKWGK+VSEIRLP+SR RIWLGSYDT EKAARAF
Sbjct: 1   MVKQAMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAF 60

Query: 57  DAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQS----V 112
           DAA FCLRG  A FNFP+NPP IS  +SL P EIQ  AA+FAN+     +  E+S     
Sbjct: 61  DAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQEAAARFANTFQDIVKGEEESGLVPG 120

Query: 113 SELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLS----N 168
           SE++ E  S S S AT  +D    +D S LDLL        P  +G     DD S     
Sbjct: 121 SEIRPESPSTSASVATSTVD----YDFSFLDLL--------PMNFGFDSFSDDFSGFSGG 168

Query: 169 DIFTPQLPAVDFADENFDGLLLNQDSFLWNF 199
           D FT  LP  D+  E+    LL++   LW+F
Sbjct: 169 DRFTEILPIEDYGGES----LLDESLILWDF 195

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C591|ERF16_ARATH Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 80/95 (84%), Gaps = 2/95 (2%)

Query: 16  RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 75
           +Y GVRKRKWGK+V+EIRLPNSR RIWLGS+D+AEKAARAFDAAL+CLRG  A+FNFPDN
Sbjct: 6   KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDN 65

Query: 76  PPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQ 110
           PP+I GGRSL P +IQ VA++FA  E L    PEQ
Sbjct: 66  PPEIPGGRSLTPQQIQVVASRFACEEEL--LPPEQ 98

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NLD5|ERF15_ARATH Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 3/87 (3%)

Query: 17  YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP-DN 75
           Y+GVRKR WGK+VSEIR+P +  RIWLGSYD  EKAARA+DAALFC+RG    +NFP D 
Sbjct: 27  YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDK 86

Query: 76  PPDISGG--RSLKPSEIQAVAAQFANS 100
            P +  G  R L   +IQ +A  +A+S
Sbjct: 87  KPQLPEGSVRPLSKLDIQTIATNYASS 113

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFE4|ERF12_ARATH Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1

 Score =  103 bits (256), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 96/193 (49%), Gaps = 23/193 (11%)

Query: 17  YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNP 76
           YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+D AL CL+G  A  NFP + 
Sbjct: 50  YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSS 109

Query: 77  PD-------ISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATV 129
                    +     L P  IQ VAAQ ANS      +P  S         SPS  +   
Sbjct: 110 SSHHLLDNLLDENTLLSPKSIQRVAAQAANS--FNHFAPTSSAVS------SPSDHDHHH 161

Query: 130 QLDSDGVFDGSLLD---LLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFD 186
                 +  GS +D    L  S+S+ Y    G+F  FD+ +   ++PQL +    DE F 
Sbjct: 162 DDGMQSLM-GSFVDNHVSLMDSTSSWYDDHNGMFL-FDNGAPFNYSPQLNSTTMLDEYF- 218

Query: 187 GLLLNQDSFLWNF 199
               + D  LW+F
Sbjct: 219 --YEDADIPLWSF 229

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3M3|RAP29_ARATH Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 58/81 (71%), Gaps = 7/81 (8%)

Query: 1  MVKH---VVEKPAER----SDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAA 53
          MVK    + EKP       ++ RYKG+R RKWGK+V+EIR PN R+RIWLGSY TA  AA
Sbjct: 13 MVKEGMVMTEKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAA 72

Query: 54 RAFDAALFCLRGRSAKFNFPD 74
          RA+D A+F LRG SA+ NFP+
Sbjct: 73 RAYDTAVFYLRGPSARLNFPE 93

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW63|RA210_ARATH Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 55/81 (67%), Gaps = 8/81 (9%)

Query: 2  VKHVVEKPA--------ERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAA 53
          V  VV  PA         + D  YKG+R RKWGK+V+EIR PN R+RIWLGSY T E AA
Sbjct: 7  VATVVSTPAVTVAAVATRKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAA 66

Query: 54 RAFDAALFCLRGRSAKFNFPD 74
          RA+D A+F LRG SA+ NFP+
Sbjct: 67 RAYDTAVFYLRGPSARLNFPE 87

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIE4|ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 7/118 (5%)

Query: 12  RSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFN 71
           ++ + Y+GVR+R WGK+V+EIRLP +R R+WLG+++TAEKAA A+D A F LRG  AK N
Sbjct: 66  KTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLN 125

Query: 72  FPD-NPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEAT 128
           FP+    D++   S   +++QA+      +E +       SVS+   EY   S+S+ T
Sbjct: 126 FPNLIHEDMNPLPSSVDTKLQAICKSLRKTEEI------CSVSDQTKEYSVYSVSDKT 177

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 53/75 (70%)

Query: 17  YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNP 76
           Y GVRKR+WGK+VSEIR P  ++RIWLGS+   E AA+A+D A FCL+GR A+ NFP+  
Sbjct: 45  YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104

Query: 77  PDISGGRSLKPSEIQ 91
            D+    +  P +IQ
Sbjct: 105 EDLPRPSTCTPRDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVQ0|ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 6/83 (7%)

Query: 17  YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNP 76
           Y+GVR+R WGK+V+EIRLP +R R+WLG+++TAE+AA A+D A + LRG  A  NFPD  
Sbjct: 232 YRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPDLK 291

Query: 77  PDISGGR------SLKPSEIQAV 93
             +  G       SL  S+IQ +
Sbjct: 292 HQLKSGSLRCMIASLLESKIQQI 314

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
224069196	209	AP2/ERF domain-containing transcription	0.989	0.942	0.654	1e-65
351721764	198	dehydration-responsive element binding p	0.974	0.979	0.620	5e-64
156571764	210	putative dehydration-responsive element	0.939	0.890	0.633	6e-64
292668889	235	AP2 domain class transcription factor [M	1.0	0.846	0.597	7e-62
356547958	199	PREDICTED: ethylene-responsive transcrip	0.984	0.984	0.606	1e-61
388514939	214	unknown [Medicago truncatula]	0.994	0.925	0.567	5e-60
359484256	205	PREDICTED: ethylene-responsive transcrip	0.994	0.965	0.592	1e-59
224069200	201	AP2/ERF domain-containing transcription	0.969	0.960	0.618	7e-59
292668989	237	AP2 domain class transcription factor [M	1.0	0.839	0.531	3e-57
386646586	237	dehydration-responsive element-binding p	1.0	0.839	0.527	1e-56

>gi|224069196|ref|XP_002326298.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372128|gb|ABQ62995.1| RAP2-like protein [Populus trichocarpa] gi|222833491|gb|EEE71968.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/211 (65%), Positives = 165/211 (78%), Gaps = 14/211 (6%)

Query: 1   MVKHVVEKP-AERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAA 59
           MVKH VEKP AERSDS++KGVRKRKWGK+VSEIRLPNSR RIWLGSYD+AEKAARAFDAA
Sbjct: 1   MVKHSVEKPVAERSDSKFKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAA 60

Query: 60  LFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQ-------SV 112
           LFCLRGR AKFNFP+NPP+I+GGRSL P+EIQ  AA+FANSEP RSQ P++       SV
Sbjct: 61  LFCLRGRVAKFNFPENPPNIAGGRSLSPAEIQEAAARFANSEPQRSQ-PDRFETDQSVSV 119

Query: 113 SELQTEYLSPS-ISEATVQLD-SDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDI 170
           SE + E   PS +S+ TVQ++  + ++DG  LD+L  + S N+ +EYGIF GFDDL ND 
Sbjct: 120 SESRAESPCPSVVSDGTVQMEGGELMWDGPFLDMLMNTGSCNHSTEYGIFQGFDDLYNDF 179

Query: 171 FTPQL-PAVDFADE-NFDGLLLNQDSFLWNF 199
           F P L P +D+ +E N DG +L Q SFLWNF
Sbjct: 180 FPPSLIPNLDYGEETNLDG-VLEQGSFLWNF 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721764|ref|NP_001238500.1| dehydration-responsive element binding protein 3 [Glycine max] gi|78216290|gb|ABB36646.1| dehydration-responsive element binding protein 3 [Glycine max]

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 126/203 (62%), Positives = 151/203 (74%), Gaps = 9/203 (4%)

Query: 1   MVKHVVEKPAERSDSRY-KGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAA 59
           M K   EKP E SDS+Y KGVRKRKWGK+VSEIRLPNSR RIWLGSYDT EKAARAFDAA
Sbjct: 1   MAKPSSEKPEEHSDSKYYKGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTPEKAARAFDAA 60

Query: 60  LFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQS--PEQSVSELQT 117
           +FCLRGR+AKFNFPDNPPDI+GG S+ PS+IQ  AAQFAN+ P    S  PE        
Sbjct: 61  MFCLRGRNAKFNFPDNPPDIAGGTSMTPSQIQIAAAQFANAGPHEGHSGRPEHP----PM 116

Query: 118 EYLSPSISEATVQLDSD-GVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLP 176
           E  SPS+SE T+Q DSD    +GS+ DL T   S+ Y S+YGIFPGFDD S D + P++P
Sbjct: 117 ESPSPSVSEGTIQTDSDVPTLNGSVTDLFTPVGSSGYASDYGIFPGFDDFSGDFYVPEMP 176

Query: 177 AVDFADENFDGLLLNQDSFLWNF 199
            V++ +EN +G ++++ SFLWNF
Sbjct: 177 NVNYGEENGEGFIVDE-SFLWNF 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156571764|gb|ABU84809.1| putative dehydration-responsive element binding protein [Broussonetia papyrifera]

 Score =  249 bits (635), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 154/199 (77%), Gaps = 12/199 (6%)

Query: 11  ERSD--SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 68
           +RSD   RYKGVRKRKWGK+VSEIRLPNSR RIWLGSYDTAEKAARAFDAALFCLRGR+A
Sbjct: 14  QRSDGSCRYKGVRKRKWGKWVSEIRLPNSRDRIWLGSYDTAEKAARAFDAALFCLRGRTA 73

Query: 69  KFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEA- 127
           KFNFP+NPP+I+GGRSL P+EIQ  AA+FANSE   S  P ++V E+Q E  SPS+S++ 
Sbjct: 74  KFNFPENPPEITGGRSLSPAEIQTAAARFANSENPNSH-PGRTVPEMQMESPSPSLSQSV 132

Query: 128 -----TVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFAD 182
                TV +DS+   DGS +D+     S NY ++YG+FPGFDDL+ D F P LP VD+ +
Sbjct: 133 SEGSVTVHIDSEVTTDGSFMDMFANIGSGNYTADYGLFPGFDDLAGDFFMPPLPTVDYGE 192

Query: 183 ENF--DGLLLNQDSFLWNF 199
           EN+  DG ++ Q+SFLWNF
Sbjct: 193 ENYNVDG-VIPQESFLWNF 210

Source: Broussonetia papyrifera

Species: Broussonetia papyrifera

Genus: Broussonetia

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668889|gb|ADE41099.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 154/216 (71%), Gaps = 17/216 (7%)

Query: 1   MVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAAL 60
           M+     +P+ER+D +YKGVRKRKWGK+VSEIRLPN R RIWLGSY T EKAARAFDAAL
Sbjct: 20  MLNQTSGEPSERNDVKYKGVRKRKWGKWVSEIRLPNCRERIWLGSYGTPEKAARAFDAAL 79

Query: 61  FCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRS-------QSPEQSVS 113
           FCLRGR+AKFNFPDNPPDI GGRSL P+EIQ  AA+FANSE  RS       Q+  QS+S
Sbjct: 80  FCLRGRTAKFNFPDNPPDIPGGRSLSPAEIQVEAARFANSEIPRSHQSMSAPQAECQSMS 139

Query: 114 ELQTEYLSPSISE--ATVQLDSDGVF--DGSLLDLLTASSSNNYPSEYGIFPGFDDLSND 169
           ELQ E  SPS+SE   T  +D+D     + SL DL  +  S NY +EYG+FPGFD+++  
Sbjct: 140 ELQAESQSPSLSEGSGTAFMDTDLQVTPNESLSDLFGSFGSGNYATEYGLFPGFDEMNGQ 199

Query: 170 IFTPQ----LPAVDFADENFDGLLLN--QDSFLWNF 199
            F+P      PAVD+ +EN DG   N  Q+SFLWNF
Sbjct: 200 FFSPASAAPTPAVDYVEENLDGQFFNPAQESFLWNF 235

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547958|ref|XP_003542371.1| PREDICTED: ethylene-responsive transcription factor ERF017-like [Glycine max]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 148/201 (73%), Gaps = 5/201 (2%)

Query: 1   MVKHVVEKPAERSDSRY-KGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAA 59
           MVK   EKP E  DS+Y KGVRKRKWGK+VSEIRLPNSR RIWLGS+DT EKAARAFDAA
Sbjct: 2   MVKPSSEKPEEHRDSKYYKGVRKRKWGKWVSEIRLPNSRQRIWLGSFDTPEKAARAFDAA 61

Query: 60  LFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEY 119
           +FCLRGR+AKFNFPDNPPDI+GG S+ PS+IQ  AAQFAN+ P    S     S +Q+  
Sbjct: 62  MFCLRGRNAKFNFPDNPPDIAGGESMTPSQIQVAAAQFANAGPHEGHSGRPEHSPMQS-- 119

Query: 120 LSPSISEATVQLDSD-GVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAV 178
           LSPS+SE TV  DSD    +GSL DL T   S+ Y S+YGIFPG DD S   + P++   
Sbjct: 120 LSPSVSEGTVLTDSDVTTLNGSLTDLFTPVGSSGYASDYGIFPGVDDFSGGFYVPEMLNF 179

Query: 179 DFADENFDGLLLNQDSFLWNF 199
           ++ +EN +G ++++ SFLWNF
Sbjct: 180 NYGEENGEGFIVDE-SFLWNF 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514939|gb|AFK45531.1| unknown [Medicago truncatula]

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 122/215 (56%), Positives = 151/215 (70%), Gaps = 17/215 (7%)

Query: 1   MVKHVVEKPA-ERSDSR-YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDA 58
           MVK  VEKP  ERSDS  Y+GVRKRKWGKYVSEIRLPNSR RIWLGSYD+AEKAARAFDA
Sbjct: 1   MVKSNVEKPTTERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDA 60

Query: 59  ALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANS--------EPLRSQSPEQ 110
           A+FCLRG  AKFNFP++PP+I+GGR++ PSEIQA AA+FANS        +P       +
Sbjct: 61  AMFCLRGSGAKFNFPNDPPNIAGGRTMTPSEIQAAAARFANSGVHIENSGQPGNVAVEYE 120

Query: 111 SVSE------LQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFD 164
           S SE      +++E LSP++S+ATVQ D D   +G   DL     S  +  +Y +FPGFD
Sbjct: 121 SSSEGTALLAMESEALSPAMSDATVQTDYDSKQNGLFSDLFAVDGSGRFEPDYSVFPGFD 180

Query: 165 DLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF 199
           D   + + P +P  D+ +EN DGL++  DSFLWNF
Sbjct: 181 DFGGNFYVPDMPIYDYGEENLDGLVI-HDSFLWNF 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484256|ref|XP_002276572.2| PREDICTED: ethylene-responsive transcription factor ERF017-like [Vitis vinifera]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 151/206 (73%), Gaps = 8/206 (3%)

Query: 1   MVKHVV---EKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFD 57
           MVK  +     PAE SD RYKGVRKRKWGK+VSEIRLPNSR RIWLGSYDTAEKAARAFD
Sbjct: 1   MVKKAIGVGSAPAESSDCRYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTAEKAARAFD 60

Query: 58  AALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSE--PLRSQSPEQSVSEL 115
           AAL+CLRGR+AKFNFP+NPP I+GG SL  SEI+A AA+FAN +     +     S+ EL
Sbjct: 61  AALYCLRGRTAKFNFPENPPKIAGGGSLTRSEIRAAAAKFANEDSSTASTSHSSHSMPEL 120

Query: 116 QTEYLSPSISEATVQLDSDGV--FDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTP 173
           Q E  SPS+S  T Q+++D     +GSL +L T+  SN+Y  +YGIFPGFDDLS++ F P
Sbjct: 121 QVESPSPSVSGETTQVETDSEINLEGSLSELFTSIGSNSYVPDYGIFPGFDDLSDNFFPP 180

Query: 174 QLPAVDFADENFDGLLLNQDSFLWNF 199
            +P  D+ +E+ +  L + D+FLWNF
Sbjct: 181 AMPTDDYGEEDMNA-LFSHDTFLWNF 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069200|ref|XP_002326299.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372130|gb|ABQ62996.1| RAP2-like protein [Populus trichocarpa] gi|222833492|gb|EEE71969.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  232 bits (591), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 128/207 (61%), Positives = 152/207 (73%), Gaps = 14/207 (6%)

Query: 1   MVKHVVEKP-AERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAA 59
           MVK   EKP AERSDS+YKGVRKRKWG++VSEIRLPNSR RIWLGSYD+AEKAA AFDAA
Sbjct: 1   MVKFNTEKPVAERSDSKYKGVRKRKWGRWVSEIRLPNSRERIWLGSYDSAEKAAHAFDAA 60

Query: 60  LFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQS----PEQSVSEL 115
           LFCLRG + KFNF +NPP+I+GG SL PSEIQ  AA+FANSEP R QS     +QS S  
Sbjct: 61  LFCLRGNTMKFNFSENPPNIAGGGSLSPSEIQEAAARFANSEPQRGQSGKLEADQSTSVS 120

Query: 116 QTEYLSPSISEATVQLDSDG-VFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQ 174
           ++   SP +S A     SDG V D    D+  ++SS+N+P+EYGIFPGFDDL +  F P 
Sbjct: 121 ESRPESPCLSAA-----SDGTVRDMPFFDMAMSTSSSNHPTEYGIFPGFDDLHSGFFAPS 175

Query: 175 -LPAVDFADE-NFDGLLLNQDSFLWNF 199
            LP +D  +  N DG +L +DSFLWNF
Sbjct: 176 FLPNLDHGEGFNLDG-VLEEDSFLWNF 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668989|gb|ADE41149.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/237 (53%), Positives = 155/237 (65%), Gaps = 38/237 (16%)

Query: 1   MVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAAL 60
           MVK  + KP+ER+D +YKGVRKRKWGK+VSEIRLPNSR RIWLGSYD  EKAARAFDAAL
Sbjct: 1   MVKQTIGKPSERNDIKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDAPEKAARAFDAAL 60

Query: 61  FCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRS--------------- 105
           FCLRG +AKFNFPDNPP+ISGGRSL  ++IQ  AA+FANSE  RS               
Sbjct: 61  FCLRGHTAKFNFPDNPPEISGGRSLSAAQIQTEAARFANSELPRSHQSMSEFQAESQSMS 120

Query: 106 ------------QSPEQSVSELQTEYLSPSISE--ATVQLDSDGVF--DGSLLDLLTASS 149
                       Q+  QS+SELQ E  SPS+SE   TV ++S+ +   + S  D  +   
Sbjct: 121 ELQAESQSMSELQAESQSMSELQAESRSPSVSEGSGTVFVESEFLVTPNDSFSDPFSTFG 180

Query: 150 SNNYPSEYGIFPGFDDLSNDIFTPQ----LPAVD-FADENFDGLLLN--QDSFLWNF 199
           S NY +EYG+F GFD+++   F+P      P VD +A+EN DG   +  Q+SFLWNF
Sbjct: 181 SGNYATEYGLFAGFDEMNYQFFSPAAAVPTPVVDYYAEENLDGQFFSPAQESFLWNF 237

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386646586|gb|AFJ14637.1| dehydration-responsive element-binding protein (DREB5), partial [Malus x domestica]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/237 (52%), Positives = 154/237 (64%), Gaps = 38/237 (16%)

Query: 1   MVKHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAAL 60
           MVK  + KP+ER+D +YKGVRKRKWGK+VSEIRLPNSR RIWLGSYD  EKAARAFDAAL
Sbjct: 1   MVKQTIGKPSERNDIKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDAPEKAARAFDAAL 60

Query: 61  FCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQ-------------- 106
           FCLRG +AKFNFPDNPP+ISGGRSL  ++IQ  AA+FANSE  RS               
Sbjct: 61  FCLRGHTAKFNFPDNPPEISGGRSLSAAQIQTEAARFANSELPRSHQSMSEFQAESQSMS 120

Query: 107 -------------SPEQSVSELQTEYLSPSISE--ATVQLDSDGVF--DGSLLDLLTASS 149
                        +  QS+SELQ E  SPS+SE   TV ++S+ +   + S  D  +   
Sbjct: 121 ELQAESQSMSELRAESQSMSELQAESRSPSVSEGSGTVFVESEFLVTPNDSFSDPFSTFG 180

Query: 150 SNNYPSEYGIFPGFDDLSNDIFTPQ----LPAVD-FADENFDGLLLN--QDSFLWNF 199
           S NY +EYG+F GFD+++   F+P      P VD +A+EN DG   +  Q+SFLWNF
Sbjct: 181 SGNYATEYGLFAGFDEMNYQFFSPAAAVPTPVVDYYAEENLDGQFFSPAQESFLWNF 237

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2202200	185	AT1G19210 [Arabidopsis thalian	0.884	0.951	0.527	1e-43
TAIR|locus:2027171	195	ORA47 [Arabidopsis thaliana (t	0.939	0.958	0.497	1.6e-38
TAIR|locus:504956445	216	AT5G21960 [Arabidopsis thalian	0.467	0.430	0.726	3.1e-35
TAIR|locus:2201103	230	DREB26 "dehydration response e	0.849	0.734	0.397	1e-22
TAIR|locus:2126619	187	AT4G31060 [Arabidopsis thalian	0.452	0.481	0.548	1.6e-22
TAIR|locus:2194819	211	AT1G44830 [Arabidopsis thalian	0.829	0.781	0.397	9e-22
TAIR|locus:2204730	244	AT1G77640 [Arabidopsis thalian	0.834	0.680	0.390	1.9e-21
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.944	0.835	0.324	1.9e-21
TAIR|locus:2035257	192	AT1G01250 [Arabidopsis thalian	0.422	0.437	0.523	2.1e-20
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.919	0.839	0.357	2.1e-20

TAIR|locus:2202200 AT1G19210 [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 107/203 (52%), Positives = 130/203 (64%)

Query:     6 VEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRG 65
             +E  +    S+YKGVRKRKWGK+VSEIRLPNSR RIWLGSYDT EKAARAFDAAL+CLRG
Sbjct:     1 MEGSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRG 60

Query:    66 RSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSIS 125
              +AKFNFPDNPP ISGGR+L  SEI+  AA+FANS      S   +  E++ E       
Sbjct:    61 NNAKFNFPDNPPVISGGRNLSRSEIREAAARFANSA--EDDSSGGAGYEIRQE------- 111

Query:   126 EATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSN----DIFTPQL-PAVDF 180
              A+  +D D  F    L +L    S N+ SE+G+FPGFDD S+    D F  QL P  D+
Sbjct:   112 SASTSMDVDSEF----LSMLPTVGSGNFASEFGLFPGFDDFSDEYSGDRFREQLSPTQDY 167

Query:   181 ---ADENF-DGLLLNQDSFLWNF 199
                 +E + DG +     FLWNF
Sbjct:   168 YQLGEETYADGSM-----FLWNF 185

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2027171 ORA47 [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 103/207 (49%), Positives = 128/207 (61%)

Query:     1 MVKHVV-EKPAERS---DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAF 56
             MVK  + E+  +R+    S+YKGVRKRKWGK+VSEIRLP+SR RIWLGSYDT EKAARAF
Sbjct:     1 MVKQAMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAF 60

Query:    57 DAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANS-EPLRSQSPEQSV--- 112
             DAA FCLRG  A FNFP+NPP IS  +SL P EIQ  AA+FAN+ + +     E  +   
Sbjct:    61 DAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQEAAARFANTFQDIVKGEEESGLVPG 120

Query:   113 SELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFT 172
             SE++ E  S S S AT  +D    +D S LDLL  +    + S    F GF     D FT
Sbjct:   121 SEIRPESPSTSASVATSTVD----YDFSFLDLLPMNFG--FDSFSDDFSGFS--GGDRFT 172

Query:   173 PQLPAVDFADENFDGLLLNQDSFLWNF 199
               LP  D+  E+    LL++   LW+F
Sbjct:   173 EILPIEDYGGES----LLDESLILWDF 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0002213 "defense response to insect" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:504956445 AT5G21960 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 69/95 (72%), Positives = 80/95 (84%)

Query:    16 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 75
             +Y GVRKRKWGK+V+EIRLPNSR RIWLGS+D+AEKAARAFDAAL+CLRG  A+FNFPDN
Sbjct:     6 KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDN 65

Query:    76 PPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQ 110
             PP+I GGRSL P +IQ VA++FA  E L    PEQ
Sbjct:    66 PPEIPGGRSLTPQQIQVVASRFACEEELLP--PEQ 98

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2201103 DREB26 "dehydration response element-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 78/196 (39%), Positives = 99/196 (50%)

Query:    16 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 75
             +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+D AL CL+G  A  NFP +
Sbjct:    49 KYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTS 108

Query:    76 PPD-------ISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEAT 128
                       +     L P  IQ VAAQ ANS      +P  S         SPS  +  
Sbjct:   109 SSSHHLLDNLLDENTLLSPKSIQRVAAQAANS--FNHFAPTSSAVS------SPSDHD-- 158

Query:   129 VQLDSDGVFD--GSLLD---LLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADE 183
                  DG+    GS +D    L  S+S+ Y    G+F  FD+ +   ++PQL +    DE
Sbjct:   159 -HHHDDGMQSLMGSFVDNHVSLMDSTSSWYDDHNGMFL-FDNGAPFNYSPQLNSTTMLDE 216

Query:   184 NFDGLLLNQDSFLWNF 199
              F     + D  LW+F
Sbjct:   217 YF---YEDADIPLWSF 229

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2126619 AT4G31060 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/93 (54%), Positives = 64/93 (68%)

Query:    11 ERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKF 70
             +R    Y+GVRKR WGK+VSEIR+P +  RIWLGSYD  EKAARA+DAALFC+RG    +
Sbjct:    21 DRKFKCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVY 80

Query:    71 NFP-DNPPDISGG--RSLKPSEIQAVAAQFANS 100
             NFP D  P +  G  R L   +IQ +A  +A+S
Sbjct:    81 NFPTDKKPQLPEGSVRPLSKLDIQTIATNYASS 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2194819 AT1G44830 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 78/196 (39%), Positives = 99/196 (50%)

Query:    16 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK-FNFPD 74
             +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+DAAL CL+G SA   NFP+
Sbjct:    34 KYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPE 93

Query:    75 NPPD----ISGG---RSLKPSEIQ--AVAAQFANSEPLRSQSPEQSVSELQTEYLSPSIS 125
                     I+ G     + P  IQ  A AA  AN++P  S     SVS       SPS  
Sbjct:    94 ISTSLYHIINNGDNNNDMSPKSIQRVAAAAAAANTDPSSS-----SVSTSSPLLSSPS-- 146

Query:   126 EATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLS--NDIFTPQLPAVDFADE 183
             E    + S   +D  +    + S S+++   Y  F G D     N +  P L     +D+
Sbjct:   147 EDLYDVVSMSQYDQQV----SLSESSSW---YNCFDGDDQFMFINGVSAPYL-TTSLSDD 198

Query:   184 NFDGLLLNQDSFLWNF 199
              F+      D  LWNF
Sbjct:   199 FFE----EGDIRLWNF 210

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:1900030 "regulation of pectin biosynthetic process" evidence=IMP

TAIR|locus:2204730 AT1G77640 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 71/182 (39%), Positives = 90/182 (49%)

Query:    16 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD- 74
             +YKGVR R WG +V+EIR PN + RIWLGSY TAE AARA+DAAL CL+G  A  NFP+ 
Sbjct:    42 KYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNI 101

Query:    75 --NPP---DISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYL----SPSIS 125
                 P   +I     L P  IQ VAAQ ANS       P         + L    S S S
Sbjct:   102 TTTSPFLMNIDEKTLLSPKSIQKVAAQAANSSSDHFTPPSDENDHDHDDGLDHHPSASSS 161

Query:   126 EATVQLDSD--GVFDGSLLDLLTASSSNNYPSEYGIF-PGFDDLS-NDIFTPQLPAVDFA 181
              A+   D D     DG L+ L+   S  +Y     +  P   +   N+IF       D++
Sbjct:   162 AASSPPDDDHHNDDDGDLVSLM--ESFVDYNEHVSLMDPSLYEFGHNEIFFTNGDPFDYS 219

Query:   182 DE 183
              +
Sbjct:   220 PQ 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 70/216 (32%), Positives = 111/216 (51%)

Query:     7 EKPAERSDSR--YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64
             +K  E++  +  Y+G R R WGK+VSEIR P  ++RIWLG++ TAE AARA D A   ++
Sbjct:    14 KKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIK 73

Query:    65 GRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA-------------NSEPLRSQSPEQS 111
             G SA  NFP+    +    SL   +IQA AA+ A             +S PL+++   + 
Sbjct:    74 GSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTPLQTRCDTEK 133

Query:   112 VSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASS-SNNYPSEYGIFPGFDDLSNDI 170
             + +  +   S S S ++    S  +  G L D++   S  NN   +  ++   D L   +
Sbjct:   134 IEKWSSSSSSASSSSSSSSSSSSSMLSGELGDIVELPSLENNVKYDCALY---DSLEGLV 190

Query:   171 FTPQLPAVDFADENF----DGLLLN---QDSFLWNF 199
               P  P +D  + +F    D +LL+   ++SFLWN+
Sbjct:   191 SMP--PWLDATENDFRYGDDSVLLDPCLKESFLWNY 224

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2035257 AT1G01250 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 44/84 (52%), Positives = 59/84 (70%)

Query:    17 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNP 76
             Y GVRKR+WGK+VSEIR P  ++RIWLGS+   E AA+A+D A FCL+GR A+ NFP+  
Sbjct:    45 YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104

Query:    77 PDISGGRSLKPSEIQAVAAQFANS 100
              D+    +  P +IQ  AA+ AN+
Sbjct:   105 EDLPRPSTCTPRDIQVAAAKAANA 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 68/190 (35%), Positives = 100/190 (52%)

Query:     7 EKPAERSDSR--YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64
             +KP + S     Y+GVRKR WGK+VSEIR P  ++RIWLG++ + E AARA D A   ++
Sbjct:    24 KKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIK 83

Query:    65 GRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSI 124
             G SA  NFPD         SL P +IQ  A + A+ E  +S S   S++   ++  S S 
Sbjct:    84 GASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSSLTFSSSQ--SSSS 141

Query:   125 SEATVQLDSDGVFD-GSLLDLLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADE 183
              E+ V   + G  + G +++L +  SS +  ++ G    F D S D++ P  P     D 
Sbjct:   142 LESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSD-SADLW-PYPPQWSEGDY 199

Query:   184 NFDGLLLNQD 193
                   L+QD
Sbjct:   200 QMIPASLSQD 209

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84QC2	ERF17_ARATH	No assigned EC number	0.5270	0.8844	0.9513	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: RAP2L11 SubName- Full=RAP2-like protein; (209 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-30
pfam00847	53	pfam00847, AP2, AP2 domain	9e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  108 bits (272), Expect = 2e-31
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query: 16 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 75
          +Y+GVR+R WGK+V+EIR P+   R+WLG++DTAE+AARA+D A F  RGRSA+ NFP++
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 76 PPD 78
            D
Sbjct: 61 LYD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  105 bits (263), Expect = 4e-30
 Identities = 38/61 (62%), Positives = 49/61 (80%)

Query: 15 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD 74
          S+Y+GVR+R WGK+V+EIR P+   RIWLG++DTAE+AARA+D A   LRG SA  NFPD
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 75 N 75
          +
Sbjct: 61 S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 62.7 bits (153), Expect = 9e-14
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 15 SRYKGVRKRK-WGKYVSEIRLPNSRA--RIWLGSYDTAEKAARAFDAALFCLRG 65
          S YKGVR  K WG++V+EIR P  +   R  LG++ T E+AARA  AA   LRG
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
PHA00280	121	putative NHN endonuclease	99.64
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.19
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	82.91

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=2.7e-21  Score=133.91  Aligned_cols=61  Identities=62%  Similarity=1.113  Sum_probs=57.3

Q ss_pred             CceeeEEeCCCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 029068           15 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN   75 (199)
Q Consensus        15 S~yrGV~~r~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~~NFp~s   75 (199)
                      |+||||+++++|||+|+|+++..++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899999888899999999655599999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=4.8e-20  Score=129.12  Aligned_cols=62  Identities=58%  Similarity=1.101  Sum_probs=58.2

Q ss_pred             ceeeEEeCCCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCCCcccCCCCCCC
Q 029068           16 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPP   77 (199)
Q Consensus        16 ~yrGV~~r~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~~NFp~s~~   77 (199)
                      +||||+++++|||+|+|+++.+++++|||+|+|+|||++|||.++.+++|.++.+|||.+..
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999988899999999987799999999999999999999999999999999999998643

>PHA00280 putative NHN endonuclease

Probab=99.64  E-value=3.1e-16  Score=123.35  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=58.9

Q ss_pred             CccccCCCCCCCCCceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCCCcc
Q 029068            2 VKHVVEKPAERSDSRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK   69 (199)
Q Consensus         2 ~~~~~~~~~~~n~S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~   69 (199)
                      +|++|++++++|+||||||+++ +.|||+|+|+  .+||+++||.|+++|+|+.||+ ++.+|||++|.
T Consensus        54 eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         54 ENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHhcccCCCCCCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            3678888899999999999977 4799999999  8999999999999999999997 67789999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.19  E-value=3.9e-11  Score=81.01  Aligned_cols=52  Identities=37%  Similarity=0.462  Sum_probs=45.2

Q ss_pred             CceeeEEeCC-CCcEEEEEeeCCC---CeEEeeccCccHHHHHHHHHHHHHHhcCC
Q 029068           15 SRYKGVRKRK-WGKYVSEIRLPNS---RARIWLGSYDTAEKAARAFDAALFCLRGR   66 (199)
Q Consensus        15 S~yrGV~~r~-~gkW~A~I~~~~~---~kri~LGtf~t~eeAA~AYd~aa~~l~G~   66 (199)
                      |+|+||++++ .++|+|+|++...   +++++||.|++++||++|++.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899998774 7999999997422   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=82.91  E-value=5.8  Score=25.53  Aligned_cols=38  Identities=11%  Similarity=0.062  Sum_probs=29.8

Q ss_pred             cEEEEEe--eCCCC--eEEeeccCccHHHHHHHHHHHHHHhc
Q 029068           27 KYVSEIR--LPNSR--ARIWLGSYDTAEKAARAFDAALFCLR   64 (199)
Q Consensus        27 kW~A~I~--~~~~~--kri~LGtf~t~eeAA~AYd~aa~~l~   64 (199)
                      +|..+|.  .+..|  ++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5788883  44344  67888999999999999998877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-12
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		9e-12

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 17 YKGVRKRKWGKYVSEIRLP-NSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 73
          Y+GVR+R WGK+ +EIR P  + AR+WLG+++TAE AA A+D A F +RG  A  NFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 17 YKGVRKRKWGKYVSEIRLP-NSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 73
          Y+GVR+R WGK+ +EIR P  + AR+WLG+++TAE AA A+D A F +RG  A  NFP
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
1gcc_A	63	Ethylene responsive element binding factor 1; tran	6e-28

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 98.9 bits (247), Expect = 6e-28
 Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 16 RYKGVRKRKWGKYVSEIRLPNSR-ARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD 74
           Y+GVR+R WGK+ +EIR P    AR+WLG+++TAE AA A+D A F +RG  A  NFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 75 N 75
           
Sbjct: 62 R 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.79
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	85.52
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	82.79
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	81.91

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=3.8e-25  Score=154.57  Aligned_cols=60  Identities=53%  Similarity=1.007  Sum_probs=56.9

Q ss_pred             ceeeEEeCCCCcEEEEEeeCC-CCeEEeeccCccHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 029068           16 RYKGVRKRKWGKYVSEIRLPN-SRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN   75 (199)
Q Consensus        16 ~yrGV~~r~~gkW~A~I~~~~-~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~~NFp~s   75 (199)
                      +||||++|++|||+|+|++|. +|+++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            699999999999999999886 479999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.79  E-value=0.11  Score=37.03  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=21.1

Q ss_pred             CCCCceeeEEeCC-CCcEEEEEeeCCCCeE
Q 029068           12 RSDSRYKGVRKRK-WGKYVSEIRLPNSRAR   40 (199)
Q Consensus        12 ~n~S~yrGV~~r~-~gkW~A~I~~~~~~kr   40 (199)
                      ..+|+|+||++.+ .+.|+|.-.+  +|++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence            5789999998874 6999999994  4543

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=85.52  E-value=0.98  Score=37.70  Aligned_cols=42  Identities=19%  Similarity=0.067  Sum_probs=31.5

Q ss_pred             eeEEeCCCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHh
Q 029068           18 KGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCL   63 (199)
Q Consensus        18 rGV~~r~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l   63 (199)
                      .||++++.|.|+.+++  .+|+++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            3577777789988765  6888999996  8888877766655443

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=82.79  E-value=3.3  Score=29.45  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             EEeCCCC--cEEEEEeeCCCCeEEeeccCc--cHHHHHHHHHHHHHHhc
Q 029068           20 VRKRKWG--KYVSEIRLPNSRARIWLGSYD--TAEKAARAFDAALFCLR   64 (199)
Q Consensus        20 V~~r~~g--kW~A~I~~~~~~kri~LGtf~--t~eeAA~AYd~aa~~l~   64 (199)
                      ++.++.|  .|+-+.+.....+++-||.|.  |+++|....+++...+.
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~   76 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA   76 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence            3445544  599998843344679999997  68999888888777663

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=81.91  E-value=0.21  Score=39.57  Aligned_cols=38  Identities=16%  Similarity=-0.007  Sum_probs=28.1

Q ss_pred             eeeEEeCCCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHH
Q 029068           17 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFD   57 (199)
Q Consensus        17 yrGV~~r~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd   57 (199)
                      .+||...+.++|.+.|.  .. +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~--~~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIV--IS-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEE--EC-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEE--Ec-CCceEEeeCCHHHHHHHHC
Confidence            45664422356888888  44 5678999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-28

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 99.4 bits (248), Expect = 1e-28
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 16 RYKGVRKRKWGKYVSEIRLPNS-RARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 73
           Y+GVR+R WGK+ +EIR P    AR+WLG+++TAE AA A+D A F +RG  A  NFP
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=3.3e-25  Score=153.38  Aligned_cols=60  Identities=53%  Similarity=1.007  Sum_probs=55.9

Q ss_pred             ceeeEEeCCCCcEEEEEeeCC-CCeEEeeccCccHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 029068           16 RYKGVRKRKWGKYVSEIRLPN-SRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN   75 (199)
Q Consensus        16 ~yrGV~~r~~gkW~A~I~~~~-~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~~NFp~s   75 (199)
                      +||||++|++|||+|+|++|. +++++|||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999998999999999874 568999999999999999999999999999999999963