Citrus Sinensis ID: 029170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFAKYFCLAFLSI
Secondary Structure (PSIPRED)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEEEEEEcccccEEEEEEEEcccccEEEccccEEEccccEEEEEEEEEEcccccccccccccccccEEEEEEEEEccccccHHHHHHHcccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHccccccccccccccccccEEEEEEEEEccccEEEEEEEEcccccEEEcccccEEccccEEEEEEEEEEEccHHccccccccccccEEEEEEEEEcccccccHHHHHcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maiadwhsrsnsdkklfgfcpfwqtsttatpsssasstqnlttsssnphvgvpnssrpatkTVSYVARsllpprrrlrldpsnnlyfpyepgkqtrsavrlkntskshvafkfqttapkscymrppggvlapgdsIIATVFKFveapennerqpldqkskdKFKIMSLKvkggidyvpelvshigpfaKYFCLAFLSI
Flexible Loop (DISEMBL)
maiadwhsrsnsdkkLFGFCPFWQTSTTATPSSSASSTQNlttsssnphvgvpnssrpatktvsyvarsllpprrrlrldpsnnlyfpyepgkqtrsavrlkNTSKSHVafkfqttapkscymrPPGGVLAPGDSIIATVFKFVEapennerqpldqkskdkfKIMSLKVKGGIDYVPELVSHIGPFAKYFCLAFLSI
Low Complexity Region (SEG)
MAIADWHSRSNSDKKLFGFCPFWqtsttatpsssasstqnlttsssnpHVGVPNSSRPATKTVSYVArsllpprrrlrldpsnnlYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFAKYFCLAFLSI
Disordered region (IsUnstruct)
**************KLFGFCPFWQT***********************************************************LYF*********************VAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE*****************FKIMSLKVKGGIDYVPELVSHIGPFAKYFCLAFL**
Disordered Region (DISOPRED)
*****************************************************************************RLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFV***************KDKFKIMSLKVKGGIDYVPELVSHIGPFAKYFCLAFLSI
Disordered Region (DISEMBL)
**********NSDKKLFGFCPFWQTS*********************************TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFAKYFCLAFLSI
Disordered Region (DISPRO)
*************KKLFGFCPFWQ***********************************************PPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFAKYFCLAFLSI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFAKYFCLAFLSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q1ECE0	266	Vesicle-associated protei	yes	no	0.904	0.672	0.668	2e-52
Q8VYN2	295	Vesicle-associated protei	no	no	0.595	0.4	0.773	1e-49
Q8LPQ7	287	Vesicle-associated protei	no	no	0.595	0.411	0.739	6e-46
Q84WW5	239	Vesicle-associated protei	no	no	0.429	0.355	0.384	1e-08
Q9LVU1	220	Vesicle-associated protei	no	no	0.464	0.418	0.333	7e-07
Q9SHC8	239	Vesicle-associated protei	no	no	0.489	0.405	0.348	6e-06
Q8VZ95	256	Vesicle-associated protei	no	no	0.464	0.359	0.326	9e-06
B9DHD7	386	Vesicle-associated protei	no	no	0.388	0.199	0.388	1e-05
Q9SYC9	571	Vesicle-associated protei	no	no	0.580	0.201	0.281	2e-05
Q5R601	249	Vesicle-associated membra	yes	no	0.414	0.329	0.312	0.0001

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/181 (66%), Positives = 140/181 (77%), Gaps = 2/181 (1%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 L 180
           L
Sbjct: 180 L 180

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  196 bits (497), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 108/119 (90%), Gaps = 1/119 (0%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           +VS VA+S LP +RRL+LDPS  LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTTAPKSC
Sbjct: 93  SVSSVAKSFLPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSC 152

Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           +MRPPG +LAPG++IIATVFKFVE PENNE+ P+DQ+S+ KFKIMSLKVKG +DYVPEL
Sbjct: 153 FMRPPGAILAPGETIIATVFKFVEPPENNEK-PMDQRSRVKFKIMSLKVKGPMDYVPEL 210

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  183 bits (465), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 103/119 (86%), Gaps = 1/119 (0%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           ++S VARSLLP +RRL+LDPS  LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC
Sbjct: 85  SMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSC 144

Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           +MRP G +LAPG+ IIATVFKFVE PENNE+ P++QKS  KFKIMSLK+K   DY+PEL
Sbjct: 145 FMRPAGAILAPGEEIIATVFKFVEPPENNEK-PMEQKSGVKFKIMSLKMKVPTDYMPEL 202

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 84  NLYFPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142
            L FP+E  KQ+  +++L N T+   VAFK +TT P+   +RP  GV+ PGDS   TV  
Sbjct: 13  ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTV-- 70

Query: 143 FVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173
                +  +  PLD + KDKF + ++ V  G
Sbjct: 71  ---TMQAQKEAPLDMQCKDKFLVQTVVVSDG 98

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 7/99 (7%)

Query: 83  NNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142
           + L F +E  KQ+   +++ N ++++VAFK +TT+PK  ++RP  GV+ P DS I  V  
Sbjct: 15  DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV-- 72

Query: 143 FVEAPENNERQPLDQKSKDKFKIMSLKV--KGGIDYVPE 179
                +     P D + KDKF + S  V     +D +P+
Sbjct: 73  ---TLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQ 108

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 12/109 (11%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS- 135
           L +DP + L FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  S 
Sbjct: 6   LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64

Query: 136 -IIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSH 183
            ++ T+    EA       P D + KDKF +  +    G    P+ V+H
Sbjct: 65  EVLVTMQAQKEA-------PADLQCKDKFLLQCVVASPGA--TPKDVTH 104

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 12/104 (11%)

Query: 84  NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS--IIATVF 141
           +L FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  +  ++ T+ 
Sbjct: 29  DLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRSTCEVLVTMQ 88

Query: 142 KFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELVS 182
              EAP        D + KDKF +  +    G+   +  PE+ S
Sbjct: 89  AQKEAPS-------DMQCKDKFLLQGVIASPGVTAKEVTPEMFS 125

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 13/90 (14%)

Query: 85  LYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD----SIIATV 140
           L F  +  KQT   V+L NT+  +VAFK +TT+PK   +RP  GV+AP      ++I   
Sbjct: 13  LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVIMQA 72

Query: 141 FKFVEAPENNERQPLDQKSKDKFKIMSLKV 170
           FK           P D   KDKF I S  V
Sbjct: 73  FK---------EPPPDMVCKDKFLIQSTAV 93

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 20/135 (14%)

Query: 29  ATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFP 88
           ++PS+S S   N +     P VG+ +  R + +               L +DP + + FP
Sbjct: 143 SSPSASVSDKGNASEVFVGPSVGIVDLIRMSDEL--------------LIIDPVD-VQFP 187

Query: 89  YEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPE 148
            E  K+   ++ L N ++++VAFK +TT  K  Y+RP  GV+ P  S    V   ++A  
Sbjct: 188 IELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSS--CEVLVIMQAL- 244

Query: 149 NNERQPLDQKSKDKF 163
             +  P D + +DK 
Sbjct: 245 --KEAPADMQCRDKL 257

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L LDP  +L F         + ++L+N S   V FK +TTAP+   +RP  G++ PG ++
Sbjct: 15  LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74

Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
             +V            QP D    +KSK KF + ++
Sbjct: 75  TVSVM----------LQPFDYDPNEKSKHKFMVQTI 100

May play a role in vesicle trafficking.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
224117290	264	predicted protein [Populus trichocarpa]	0.863	0.647	0.694	3e-57
225461302	264	PREDICTED: vesicle-associated protein 4-	0.888	0.666	0.650	3e-56
356543790	263	PREDICTED: vesicle-associated protein 4-	0.863	0.650	0.68	2e-54
312282877	271	unnamed protein product [Thellungiella h	0.898	0.656	0.673	2e-51
18423592	266	membrane-associated mannitol-induced pro	0.904	0.672	0.668	9e-51
225447643	259	PREDICTED: vesicle-associated protein 4-	0.843	0.644	0.617	1e-50
8809582	295	membrane associated protein [Arabidopsis	0.904	0.606	0.668	1e-50
388521835	270	unknown [Lotus japonicus]	0.863	0.633	0.611	2e-50
224116236	235	predicted protein [Populus trichocarpa]	0.606	0.510	0.801	2e-50
363807736	265	uncharacterized protein LOC100794120 [Gl	0.868	0.649	0.642	1e-49

>gi|224117290|ref|XP_002317531.1| predicted protein [Populus trichocarpa] gi|222860596|gb|EEE98143.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 141/177 (79%), Gaps = 6/177 (3%)

Query: 8   SRSNSDK--KLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNP--HVGVPNSSRPATKTV 63
           +++N D   KLF  CPFWQT+T ++ SSS  +  +    S N   HV V NSS   + TV
Sbjct: 7   NKTNGDHNMKLFRLCPFWQTATNSSTSSSTQNLNHSHKGSGNSVRHVAV-NSSGLKSTTV 65

Query: 64  SYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM 123
           S VARSLLP  RRLRLDP+NNLYFPYEPGKQ RSA+RLKN SKSHVAFKFQTTAPKSCYM
Sbjct: 66  SSVARSLLPAPRRLRLDPANNLYFPYEPGKQVRSAIRLKNRSKSHVAFKFQTTAPKSCYM 125

Query: 124 RPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           RPPGG+LAPG+S+IATVFKFVE PENN +Q +DQKS  KFKI+SLKVKGGI+YVPEL
Sbjct: 126 RPPGGILAPGESLIATVFKFVEQPENNAKQ-MDQKSNVKFKIVSLKVKGGIEYVPEL 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461302|ref|XP_002284424.1| PREDICTED: vesicle-associated protein 4-1 [Vitis vinifera] gi|147780490|emb|CAN60507.1| hypothetical protein VITISV_002788 [Vitis vinifera] gi|302143088|emb|CBI20383.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 119/183 (65%), Positives = 140/183 (76%), Gaps = 7/183 (3%)

Query: 1   MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNS-SRPA 59
           M IAD   + +S+ KL+  CPFWQ+   +    S+SSTQN           V ++ +R +
Sbjct: 1   MGIAD-RRKPSSEGKLWRLCPFWQSGNGSP---SSSSTQNFQQHKIRGRRHVDDTDTRSS 56

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
              VS VARS LP RRRLRLDP+NNLYFPYEPGKQ +SAVR+KNTS+SHVAFKFQTTAPK
Sbjct: 57  PSKVSSVARSFLPTRRRLRLDPANNLYFPYEPGKQVKSAVRMKNTSRSHVAFKFQTTAPK 116

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNER--QPLDQKSKDKFKIMSLKVKGGIDYV 177
           SCYMRPPGG+LAPG+SIIATVFKF+E PENNE+  + LDQKS  KFKIMSLKVK G+DYV
Sbjct: 117 SCYMRPPGGILAPGESIIATVFKFMEHPENNEKNEKQLDQKSNVKFKIMSLKVKAGMDYV 176

Query: 178 PEL 180
           PEL
Sbjct: 177 PEL 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543790|ref|XP_003540343.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/175 (68%), Positives = 137/175 (78%), Gaps = 4/175 (2%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSY 65
            +S SD K + FC  PFWQT+ T + SSS S   N+   S N    V  SS  ++ TVS 
Sbjct: 6   EKSGSDGKGWSFCRMPFWQTTHTPS-SSSMSYMHNVHQQSQNNAQSVDRSSHHSSTTVSS 64

Query: 66  VARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRP 125
           VA+SLLP +RRLRLDPSN LYFPYEPGKQ RSA+ +KNT KSHVAFKFQTTAPKSCYMRP
Sbjct: 65  VAKSLLPTKRRLRLDPSNKLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMRP 124

Query: 126 PGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           PGG+LAPG+SIIATVFKFVE PENNE+  +D+KSK KFKIMSLKV+G +DYVPEL
Sbjct: 125 PGGILAPGESIIATVFKFVEPPENNEKS-IDKKSKVKFKIMSLKVQGEMDYVPEL 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282877|dbj|BAJ34304.1| unnamed protein product [Thellungiella halophila]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 148/187 (79%), Gaps = 9/187 (4%)

Query: 1   MAIADWHSRSNSDKKLFGFCPFWQ--TSTTATPSSSASSTQNLTTSS----SNPHV-GVP 53
           MAI+D  +RS   +KLF  CPFWQ   +T+++PSS+ + +QN  +S     +N  V GVP
Sbjct: 1   MAISDRQNRSADRQKLFRLCPFWQRRNTTSSSPSSTQNPSQNYRSSRRGHRNNTDVSGVP 60

Query: 54  NSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKF 113
             S  +  TVS VA+SLLP RRRLRLDPS+ LYFPYEPGKQ RSA +LKNTSKSH AFKF
Sbjct: 61  KPS--SALTVSSVAKSLLPARRRLRLDPSSYLYFPYEPGKQVRSATKLKNTSKSHTAFKF 118

Query: 114 QTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173
           QTTAPKSCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+Q L+QKSK KFKIMSLKVK G
Sbjct: 119 QTTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQKLNQKSKVKFKIMSLKVKPG 178

Query: 174 IDYVPEL 180
           ++YVPEL
Sbjct: 179 VEYVPEL 185

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423592|ref|NP_568804.1| membrane-associated mannitol-induced protein [Arabidopsis thaliana] gi|122237442|sp|Q1ECE0.1|VAP41_ARATH RecName: Full=Vesicle-associated protein 4-1; AltName: Full=Plant VAP homolog 4-1; Short=AtPVA41; AltName: Full=Protein MEMBRANE-ASSOCIATED MANNITOL-INDUCED; Short=AtMAMI; AltName: Full=VAMP-associated protein 4-1 gi|107738368|gb|ABF83684.1| At5g54110 [Arabidopsis thaliana] gi|332009069|gb|AED96452.1| membrane-associated mannitol-induced protein [Arabidopsis thaliana]

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/181 (66%), Positives = 140/181 (77%), Gaps = 2/181 (1%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 L 180
           L
Sbjct: 180 L 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447643|ref|XP_002274772.1| PREDICTED: vesicle-associated protein 4-2-like [Vitis vinifera]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/175 (61%), Positives = 136/175 (77%), Gaps = 8/175 (4%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSY 65
            +S S++K++  C  PFWQ++  ++ SS++SS Q++   S +  V        ++  VS+
Sbjct: 6   EKSFSEEKVWSLCKMPFWQSNNASSSSSTSSSLQSVHQQSQSHQV------LQSSNAVSF 59

Query: 66  VARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRP 125
           V +SLLP RRRL LDP N LYFPYEPGKQ RSA+ +KN S+SH+AFKFQTTAPKSCYMRP
Sbjct: 60  VTKSLLPTRRRLHLDPPNKLYFPYEPGKQVRSAISIKNISRSHLAFKFQTTAPKSCYMRP 119

Query: 126 PGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           PGG+LAPG+S+IATVFKFVE PENNE+  +DQKSK KFKIMSLKVKG +DYVPEL
Sbjct: 120 PGGILAPGESLIATVFKFVEHPENNEKPAVDQKSKVKFKIMSLKVKGEMDYVPEL 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8809582|dbj|BAA97133.1| membrane associated protein [Arabidopsis thaliana]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/181 (66%), Positives = 140/181 (77%), Gaps = 2/181 (1%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 L 180
           L
Sbjct: 180 L 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521835|gb|AFK48979.1| unknown [Lotus japonicus]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/175 (61%), Positives = 134/175 (76%), Gaps = 4/175 (2%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSY 65
            ++ SD K+   C  PFWQT+  ++ S++ SS  ++   +      +  S+   + TVS 
Sbjct: 6   EKTGSDVKVRSLCSMPFWQTTRASSSSATGSSMHSVHQQNQVVQ-SLDRSNHQPSSTVSS 64

Query: 66  VARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRP 125
           +A+SLLP  +RLRLDP N LYFPYEPGKQ RSAV +KNT KSHVAFKFQTTAPKSC+MRP
Sbjct: 65  LAKSLLPIWKRLRLDPPNKLYFPYEPGKQVRSAVAIKNTCKSHVAFKFQTTAPKSCFMRP 124

Query: 126 PGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           PGG+LAPG+SIIATVFKFVE P+NNE+ P+D+KS+ KFKIMSLKVKG +DYVPEL
Sbjct: 125 PGGILAPGESIIATVFKFVEPPDNNEK-PVDKKSRVKFKIMSLKVKGEMDYVPEL 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/121 (80%), Positives = 111/121 (91%), Gaps = 1/121 (0%)

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
           + +VS VARSLLP RRRL+LDP++ LYFPYEPGKQ RSA+R+KNTSKSHVAFKFQTTAPK
Sbjct: 31  SNSVSSVARSLLPTRRRLKLDPASKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPK 90

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SC+MRPPG +LAPG+SIIATVFKFVE PENNE+ P++QKSK KFKIMSLKVKG +DYVPE
Sbjct: 91  SCFMRPPGAILAPGESIIATVFKFVELPENNEK-PMEQKSKVKFKIMSLKVKGVMDYVPE 149

Query: 180 L 180
           L
Sbjct: 150 L 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807736|ref|NP_001241916.1| uncharacterized protein LOC100794120 [Glycine max] gi|255637375|gb|ACU19016.1| unknown [Glycine max]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 135/176 (76%), Gaps = 4/176 (2%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASS-TQNLTTSSSNPHVGVPNSSRPATKTVS 64
            +S SD K + FC  PFWQT+ T + S+++ S   N+   + N    V  SS  ++ TVS
Sbjct: 6   EKSGSDGKGWSFCRMPFWQTTHTPSSSTTSMSYMHNVHPQNQNNFQSVDRSSHHSSTTVS 65

Query: 65  YVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMR 124
            +A+SLLP +RRL LDPSN LYFPYEPGKQ RSA+ +KNT KSHVAFKFQTTAPKSCYMR
Sbjct: 66  SMAKSLLPTKRRLHLDPSNKLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMR 125

Query: 125 PPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           PP G+LAPG+SIIATVFKFVE PENNE+ P+DQKSK KF IMSLKV+  +DYVPEL
Sbjct: 126 PPAGILAPGESIIATVFKFVEPPENNEK-PIDQKSKVKFNIMSLKVQSEMDYVPEL 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.904	0.672	0.546	3.4e-45
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.474	0.403	0.821	1.3e-38
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.474	0.327	0.757	1.5e-35
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.414	0.343	0.397	2.1e-09
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.444	0.4	0.372	3.6e-08
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.459	0.355	0.323	6.7e-07
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.454	0.376	0.340	7.1e-07
TAIR|locus:2025585	386	VAP27-2 "vamp/synaptobrevin-as	0.398	0.204	0.404	7.4e-07
CGD|CAL0002790	411	orf19.1212 [Candida albicans (	0.393	0.189	0.357	8.2e-07
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.323	0.423	0.342	1.6e-05

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 99/181 (54%), Positives = 112/181 (61%)

Query:     1 MAIADWHSRSNSDKK-LFGFCPFWXXXXXXXXXXXXXXXXXXXXXXXXXHVGVPNSSRPA 59
             M I D  + S   KK LF  CPFW                         +  +   S+P 
Sbjct:     1 MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query:    60 TKTVSYVAXXXXXXXXXXXXXXXXXXYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
               T+S VA                  YFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct:    61 L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query:   120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
             SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct:   120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query:   180 L 180
             L
Sbjct:   180 L 180

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/95 (82%), Positives = 88/95 (92%)

Query:    86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             +FPYEPGKQ RSAV++KN SKSHVAFKFQTTAPKSC+MRPPGG+LAPG+SIIATVFKFVE
Sbjct:    55 FFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFVE 114

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
              PENNE+ PLDQK K KFKI+SLKVKG ++YVPEL
Sbjct:   115 HPENNEK-PLDQKCKVKFKIVSLKVKGPMEYVPEL 148

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 72/95 (75%), Positives = 83/95 (87%)

Query:    86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             YFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC+MRP G +LAPG+ IIATVFKFVE
Sbjct:   109 YFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVE 168

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
              PENNE+ P++QKS  KFKIMSLK+K   DY+PEL
Sbjct:   169 PPENNEK-PMEQKSGVKFKIMSLKMKVPTDYMPEL 202

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 35/88 (39%), Positives = 52/88 (59%)

Query:    87 FPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             FP+E  KQ+  +++L N T+   VAFK +TT P+   +RP  GV+ PGDS   TV   ++
Sbjct:    16 FPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTVT--MQ 73

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGG 173
             A    +  PLD + KDKF + ++ V  G
Sbjct:    74 A---QKEAPLDMQCKDKFLVQTVVVSDG 98

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 35/94 (37%), Positives = 53/94 (56%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             F +E  KQ+   +++ N ++++VAFK +TT+PK  ++RP  GV+ P DS I  V   ++A
Sbjct:    19 FLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVT--LQA 76

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
                    P D + KDKF + S  V    D V EL
Sbjct:    77 ---QREYPPDMQCKDKFLLQSTIVPPHTD-VDEL 106

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  +    V   ++A
Sbjct:    32 FPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRST--CEVLVTMQA 89

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELVS 182
                 +  P D + KDKF +  +    G+   +  PE+ S
Sbjct:    90 ---QKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFS 125

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 33/97 (34%), Positives = 51/97 (52%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  S  + V   ++A
Sbjct:    15 FPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSS--SEVLVTMQA 72

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSH 183
                 +  P D + KDKF +  +    G    P+ V+H
Sbjct:    73 ---QKEAPADLQCKDKFLLQCVVASPGA--TPKDVTH 104

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 34/84 (40%), Positives = 46/84 (54%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             F  +  KQT   V+L NT+  +VAFK +TT+PK   +RP  GV+AP  +   TV   ++A
Sbjct:    15 FAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI--MQA 72

Query:   147 PENNERQPLDQKSKDKFKIMSLKV 170
                 +  P D   KDKF I S  V
Sbjct:    73 ---FKEPPPDMVCKDKFLIQSTAV 93

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

CGD|CAL0002790 orf19.1212 [Candida albicans (taxid:5476)]

 Score = 121 (47.7 bits), Expect = 8.2e-07, P = 8.2e-07
 Identities = 30/84 (35%), Positives = 45/84 (53%)

Query:    93 KQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI-IATVFKFVEAPENNE 151
             KQ    + L N + + +AFK +TTAPK   +RP   ++ PGDS+ I+ + +    P    
Sbjct:    58 KQITEYLTLSNPTNTPLAFKVKTTAPKLYCVRPNASIVQPGDSLQISIILQGFSQP---- 113

Query:   152 RQPLDQKSKDKFKIMSLKVKGGID 175
               P D K KDKF ++S+     ID
Sbjct:   114 -LPNDYKCKDKFLLVSVPAPNSID 136

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=IEA

GO:0048309 "endoplasmic reticulum inheritance" evidence=IEA

GO:0006348 "chromatin silencing at telomere" evidence=IEA

GO:0032377 "regulation of intracellular lipid transport" evidence=IEA

GO:0033149 "FFAT motif binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 105 (42.0 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 24/70 (34%), Positives = 41/70 (58%)

Query:    99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQK 158
             ++L+N S   V FK +TTAP+   +RP  G++ PG S+I +V       +  +  P ++K
Sbjct:    36 LKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVSVML-----QPFDYDP-NEK 89

Query:   159 SKDKFKIMSL 168
             SK KF + ++
Sbjct:    90 SKHKFMVQTI 99

GO:0005198 "structural molecule activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1ECE0	VAP41_ARATH	No assigned EC number	0.6685	0.9040	0.6729	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	2e-25
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	1e-04

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 94.4 bits (235), Expect = 2e-25
 Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L +DP + L+F     KQ  S + L N S   VAFK +TT PK   +RP  G+L PG+S+
Sbjct: 2   LTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESV 61

Query: 137 IATVFKFVEAPENNERQPLDQ----KSKDKFKIMSLKVKGGIDYVPELVS 182
             T+           RQP D+      KDKF I   +         E   
Sbjct: 62  TITIT----------RQPFDKEPGDPKKDKFVIQYTEAPDDAKDAKEAFK 101

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 82  SNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVF 141
           S    F      +++    ++N S   V FK +TTAPK   +RP  G++ P  ++   V 
Sbjct: 6   SPQTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEV- 64

Query: 142 KFVEAPENNERQPLDQKSKDKFKIMSLKVK 171
             +      E  P D K +DKF I S +  
Sbjct: 65  --ILQGLTEEPAP-DFKCRDKFLIQSYRFD 91

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.9
KOG0439	218	consensus VAMP-associated protein involved in inos	99.9
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.88
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.55
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	96.61
PRK09918	230	putative fimbrial chaperone protein; Provisional	94.62
PF14646	426	MYCBPAP: MYCBP-associated protein family	94.07
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	92.32
PRK09926	246	putative chaperone protein EcpD; Provisional	92.16
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	90.78
PRK15249	253	fimbrial chaperone protein StbB; Provisional	90.49
PRK15295	226	fimbrial assembly chaperone SthB; Provisional	90.14
PRK15299	227	fimbrial chaperone protein StiB; Provisional	89.06
PRK15211	229	fimbrial chaperone protein PefD; Provisional	88.49
PRK15192	234	fimbrial chaperone BcfG; Provisional	87.85
PRK11385	236	putativi pili assembly chaperone; Provisional	87.81
PRK15208	228	long polar fimbrial chaperone LpfB; Provisional	87.25
PRK15246	233	fimbrial assembly chaperone StbE; Provisional	86.62
COG3121	235	FimC P pilus assembly protein, chaperone PapD [Cel	85.11
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	83.46
PRK15290	243	lfpB fimbrial chaperone protein; Provisional	83.0
PRK15195	229	fimbrial chaperone protein FimC; Provisional	82.59
PRK15254	239	fimbrial chaperone protein StdC; Provisional	82.37

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.90  E-value=2.2e-23  Score=156.23  Aligned_cols=103  Identities=30%  Similarity=0.432  Sum_probs=81.7

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p~~  156 (198)
                      |.|+|.+.|.|+++.++..++.|+|+|+++.+||||||||+|.+|+|+|+.|+|+||+++.|.|+++   |.....  . 
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~---~~~~~~--~-   75 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQ---PFDFEP--S-   75 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTT--T-
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEE---ecccCC--C-
Confidence            7899999999999999999999999999999999999999999999999999999999999999996   433221  1 


Q ss_pred             CCCCCeEEEEEEEeCCCCCc----hhhhhhccC
Q 029170          157 QKSKDKFKIMSLKVKGGIDY----VPELVSHIG  185 (198)
Q Consensus       157 ~~~kDKFlVqs~~v~~~~d~----~~elfk~~k  185 (198)
                      ...+|||+|+++.++++...    ...+|++++
T Consensus        76 ~~~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~~  108 (109)
T PF00635_consen   76 NKKKDKFLIQSIVVPDNATDPKKDFKQIWKNGK  108 (109)
T ss_dssp             STSSEEEEEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred             CCCCCEEEEEEEEcCCCccchhhhHHHHHhccC
Confidence            22399999999999877633    455666543

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.3e-23  Score=172.86  Aligned_cols=115  Identities=37%  Similarity=0.550  Sum_probs=101.1

Q ss_pred             CCCCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCc
Q 029170           71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENN  150 (198)
Q Consensus        71 ~p~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~  150 (198)
                      +..+.+|.++|.++|+|..+..+++.+.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|.++   |. .
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q---~~-~   78 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQ---PF-E   78 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEec---cC-c
Confidence            3467899999988999999999999999999999999999999999999999999999999999999999987   42 2


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCC-CCchhhhhhccC--CcEEE
Q 029170          151 ERQPLDQKSKDKFKIMSLKVKGG-IDYVPELVSHIG--PFAKY  190 (198)
Q Consensus       151 e~~p~~~~~kDKFlVqs~~v~~~-~d~~~elfk~~k--~~v~~  190 (198)
                      +. |.+.+++|||+||++.++.+ .+.+.++|+.++  +.+..
T Consensus        79 ~~-P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~  120 (218)
T KOG0439|consen   79 KS-PPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQKETPKESF  120 (218)
T ss_pred             cC-chhhcccceEEEEEEecCCccccchhhhcccccccccccc
Confidence            22 67788999999999999986 566799999887  44433

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.88  E-value=2.8e-22  Score=170.35  Aligned_cols=101  Identities=26%  Similarity=0.386  Sum_probs=90.5

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p~~  156 (198)
                      |.++|  ++.|..|+..+.++.+.|.|++.++|+||||||+|+.|+||||.|+|+|++++.|.|+|+   ++..|. .++
T Consensus         3 veisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq---~l~eEp-apd   76 (242)
T COG5066           3 VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQ---GLTEEP-APD   76 (242)
T ss_pred             eEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEee---ccccCC-CCC
Confidence            67788  688888999999999999999999999999999999999999999999999999999997   555554 788


Q ss_pred             CCCCCeEEEEEEEeCCCC---Cchhhhhhcc
Q 029170          157 QKSKDKFKIMSLKVKGGI---DYVPELVSHI  184 (198)
Q Consensus       157 ~~~kDKFlVqs~~v~~~~---d~~~elfk~~  184 (198)
                      .+|+||||||++..+.+.   || +++|+.-
T Consensus        77 fKCrdKFLiqs~~~~~~l~g~d~-ad~wt~~  106 (242)
T COG5066          77 FKCRDKFLIQSYRFDWRLSGSDF-ADHWTSS  106 (242)
T ss_pred             ccccceeEEEEeccChhhccchH-HHHHHhh
Confidence            999999999999998764   55 9999864

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.55  E-value=1.2e-06  Score=65.02  Aligned_cols=67  Identities=30%  Similarity=0.418  Sum_probs=59.6

Q ss_pred             cEEEcCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeCC--CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           76 RLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTA--PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        76 ~L~v~P~~~L~F~~-~~~k~v~s~LtL~N~S~~~VAFKVKTTa--P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      .|.++|. +|.|-. ..|......|+|+|.+..++.|+|+.-.  ...|.|.|..|+|+||+++.+.|.+.
T Consensus         3 ~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~   72 (102)
T PF14874_consen    3 TLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFS   72 (102)
T ss_pred             EEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence            5899996 999976 4678888999999999999999997643  57899999999999999999999996

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=96.61  E-value=0.035  Score=42.44  Aligned_cols=62  Identities=19%  Similarity=0.367  Sum_probs=51.5

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC---C------CcEEecCCceeeCCCCeEEEEEEe
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA---P------KSCYMRPPGGVLAPGDSIIATVFK  142 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa---P------~~Y~VrP~~GiL~Pgesi~I~Vtl  142 (198)
                      |.|+|. .+.|+.   .+....++|+|.++.++.+.+....   .      +-+.|-|+.-.|+||++..|.|..
T Consensus         2 i~i~~t-rii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen    2 IQISPT-RIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             EEESSS-EEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             EEEccE-EEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            678886 888884   2235799999999999999987653   1      269999999999999999999944

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=94.62  E-value=0.7  Score=39.83  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=52.2

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCC-----CcEEecCCceeeCCCCeEEEEEEeeecCCC
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-----KSCYMRPPGGVLAPGDSIIATVFKFVEAPE  148 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP-----~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~  148 (198)
                      --|.+.|. .+.|..   ++....|+|+|.++.++.-.......     .-|.|.|+.-.|+||+...|.|.+....|.
T Consensus        24 a~v~l~~t-Rvi~~~---~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~lp~   98 (230)
T PRK09918         24 AGMVPETS-VVIVEE---SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSGSPL   98 (230)
T ss_pred             eeEEEccE-EEEEEC---CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCCCC
Confidence            35788886 888874   23347999999999876666544221     359999999999999999999988633343

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=94.07  E-value=0.33  Score=45.28  Aligned_cols=68  Identities=19%  Similarity=0.358  Sum_probs=56.5

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEE-EECCCCCeEEEEEeeCC------------CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVR-LKNTSKSHVAFKFQTTA------------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~Lt-L~N~S~~~VAFKVKTTa------------P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      ..+.+.-.|.|...++..+...|. |.|.+..-|-|..+--.            ...|......|+|.||++..|.|+.+
T Consensus       231 ~~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~  310 (426)
T PF14646_consen  231 PEVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFK  310 (426)
T ss_pred             CccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEe
Confidence            445555689999998887777777 99999999999976432            35699999999999999999999997


Q ss_pred             e
Q 029170          144 V  144 (198)
Q Consensus       144 ~  144 (198)
                      .
T Consensus       311 s  311 (426)
T PF14646_consen  311 S  311 (426)
T ss_pred             C
Confidence            3

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=92.32  E-value=0.66  Score=30.08  Aligned_cols=43  Identities=23%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             EEEECCCCCeE-EEEEeeCCCCcEEecCCceeeCCCCeEEEEEEe
Q 029170           99 VRLKNTSKSHV-AFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK  142 (198)
Q Consensus        99 LtL~N~S~~~V-AFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl  142 (198)
                      ++|+|+++.++ ..+|+++. +-..+......|.||++..|.|++
T Consensus         2 F~~~N~g~~~L~I~~v~tsC-gCt~~~~~~~~i~PGes~~i~v~y   45 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTSC-GCTTAEYSKKPIAPGESGKIKVTY   45 (45)
T ss_pred             EEEEECCCCcEEEEEeeEcc-CCEEeeCCcceECCCCEEEEEEEC
Confidence            57999999854 56677654 677888888999999999999863

>PRK09926 putative chaperone protein EcpD; Provisional

Probab=92.16  E-value=1.3  Score=38.64  Aligned_cols=67  Identities=12%  Similarity=0.165  Sum_probs=51.9

Q ss_pred             CCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCC----------cEEecCCceeeCCCCeEEEEEEee
Q 029170           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK----------SCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        74 ~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~----------~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      .--|.++|. .+.|+.   ++-...|+|.|.++.++.-..-....+          -|.|.|+.-.|+||+...|.|...
T Consensus        24 ~A~i~l~~T-RvI~~~---~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~   99 (246)
T PRK09926         24 IADIVISGT-RIIYKS---DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT   99 (246)
T ss_pred             eeeEEeCce-EEEEeC---CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence            356889996 899984   223479999999998776665443211          399999999999999999999986


Q ss_pred             e
Q 029170          144 V  144 (198)
Q Consensus       144 ~  144 (198)
                      .
T Consensus       100 ~  100 (246)
T PRK09926        100 A  100 (246)
T ss_pred             C
Confidence            3

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=90.78  E-value=0.88  Score=34.63  Aligned_cols=67  Identities=13%  Similarity=0.288  Sum_probs=38.8

Q ss_pred             EEEcCCCceEee-CCCCC-eeEEEEEEECCCCCeEEEEEeeCCCCcEEe-cCCce-eeCCCCeEEEEEEee
Q 029170           77 LRLDPSNNLYFP-YEPGK-QTRSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGG-VLAPGDSIIATVFKF  143 (198)
Q Consensus        77 L~v~P~~~L~F~-~~~~k-~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~V-rP~~G-iL~Pgesi~I~Vtl~  143 (198)
                      |.|-+..-..|. .+.|. +=...|+|.|.+.++..|.|+...+..+.+ .|... -|.||+...+.|.+.
T Consensus        13 ~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~   83 (118)
T PF11614_consen   13 LNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT   83 (118)
T ss_dssp             EEEEE-SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred             EEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence            344443333333 33443 223799999999999999999988888888 66555 499999999999886

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=90.49  E-value=2.2  Score=37.35  Aligned_cols=65  Identities=17%  Similarity=0.194  Sum_probs=49.0

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC------C-----CcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P-----KSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa------P-----~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      --|.|+|. .+.|+..   +....|+|.|.++.++.-..-+..      |     .-|.|.|+.--|+||+...|.|...
T Consensus        28 A~l~l~~T-Rviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~  103 (253)
T PRK15249         28 ASVTILGS-RIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN  103 (253)
T ss_pred             eEEEeCce-EEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence            45889986 8888742   234799999999887555543221      1     1399999999999999999999885

>PRK15295 fimbrial assembly chaperone SthB; Provisional

Probab=90.14  E-value=2.8  Score=36.17  Aligned_cols=63  Identities=16%  Similarity=0.224  Sum_probs=47.9

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee--CC-------CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT--TA-------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKT--Ta-------P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      --|.+++. .+.|+..   +....|+|.|.++.++.  |++  ..       ..-|.|.|+.=.|+||+...|.|...
T Consensus        19 A~i~l~~T-RvI~~~~---~~~~si~i~N~~~~p~L--vQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~   90 (226)
T PRK15295         19 ASIVVGGT-RLVFDGN---NDESSINVENKDSKANL--VQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRS   90 (226)
T ss_pred             ccEEeCce-EEEEeCC---CceeEEEEEeCCCCcEE--EEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEEC
Confidence            34788885 8888752   23479999999988644  443  11       12499999999999999999999885

>PRK15299 fimbrial chaperone protein StiB; Provisional

Probab=89.06  E-value=3.8  Score=35.25  Aligned_cols=65  Identities=9%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC--------CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA--------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa--------P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      --|.++|. .+.|+..   +-...|+|.|.++.++.-..-...        ..-|.|.|+.-.|+||+...|.|...
T Consensus        22 a~i~l~~T-Rvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~   94 (227)
T PRK15299         22 AGINIGTT-RVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT   94 (227)
T ss_pred             eeEEECce-EEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence            45888886 8888743   234799999998876554432211        12399999999999999999999885

>PRK15211 fimbrial chaperone protein PefD; Provisional

Probab=88.49  E-value=4.2  Score=35.30  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=48.4

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC------CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa------P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      --|.+++. .+.|+..   .-...|+|+|.++.++.-......      ..-|.|.|+.-.|+||+...|.|...
T Consensus        22 A~v~l~~T-RvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~   92 (229)
T PRK15211         22 AAFVLNGT-RFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKT   92 (229)
T ss_pred             EEEEECce-EEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence            34788885 8888742   234799999999887444332211      12499999999999999999999986

>PRK15192 fimbrial chaperone BcfG; Provisional

Probab=87.85  E-value=4.2  Score=35.45  Aligned_cols=63  Identities=13%  Similarity=0.123  Sum_probs=47.8

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeC----------C----CCcEEecCCceeeCCCCeEEEEE
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT----------A----PKSCYMRPPGGVLAPGDSIIATV  140 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTT----------a----P~~Y~VrP~~GiL~Pgesi~I~V  140 (198)
                      --|.++.. .+.|+.   ++-...|+|.|.++.+  |=|++.          .    ..-|.|.|+.-.|+||+...+.|
T Consensus        22 Agi~l~~T-RvIy~~---~~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI   95 (234)
T PRK15192         22 AGVVIGGT-RFIYHA---GAPALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRV   95 (234)
T ss_pred             eeEEeCce-EEEEcC---CCceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEE
Confidence            34777875 888875   2234799999999886  555552          1    11399999999999999999999


Q ss_pred             Eee
Q 029170          141 FKF  143 (198)
Q Consensus       141 tl~  143 (198)
                      ...
T Consensus        96 ~~~   98 (234)
T PRK15192         96 VYT   98 (234)
T ss_pred             EEC
Confidence            886

>PRK11385 putativi pili assembly chaperone; Provisional

Probab=87.81  E-value=4.3  Score=35.37  Aligned_cols=65  Identities=18%  Similarity=0.292  Sum_probs=48.4

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeC------------CCCcEEecCCceeeCCCCeEEEEEEe
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT------------APKSCYMRPPGGVLAPGDSIIATVFK  142 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTT------------aP~~Y~VrP~~GiL~Pgesi~I~Vtl  142 (198)
                      --|.+++. .+.|+.   ++....|+|.|.++.+..=.....            ...-|.|.|+.=-|+||+...+.|.+
T Consensus        26 A~v~l~~T-RvIy~~---~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~  101 (236)
T PRK11385         26 AGVVVGGT-RFIFPA---DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR  101 (236)
T ss_pred             eeEEeCce-EEEEcC---CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE
Confidence            45788885 888884   223479999999998644333211            11249999999999999999999988


Q ss_pred             e
Q 029170          143 F  143 (198)
Q Consensus       143 ~  143 (198)
                      .
T Consensus       102 ~  102 (236)
T PRK11385        102 T  102 (236)
T ss_pred             C
Confidence            6

>PRK15208 long polar fimbrial chaperone LpfB; Provisional

Probab=87.25  E-value=5.3  Score=34.38  Aligned_cols=65  Identities=14%  Similarity=0.264  Sum_probs=46.7

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEE-EEeeCCC----CcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAF-KFQTTAP----KSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAF-KVKTTaP----~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      --|.++|. .+.|+..   +-...|+|+|.+++ ++.. ..-....    .-|.|.|+.-.|+||+...|.|...
T Consensus        21 agv~l~~T-RvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~   91 (228)
T PRK15208         21 GGVALSST-RVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNI   91 (228)
T ss_pred             ccEEeCce-EEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEEC
Confidence            35888886 8888852   23479999999864 3332 2211111    1399999999999999999999875

>PRK15246 fimbrial assembly chaperone StbE; Provisional

Probab=86.62  E-value=6.2  Score=34.28  Aligned_cols=64  Identities=17%  Similarity=0.294  Sum_probs=47.5

Q ss_pred             cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC------C----CcEEecCCceeeCCCCeEEEEEEee
Q 029170           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa------P----~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      -|.|++. .+.|+.   ++....|+|.|.++.++.=..-...      |    .-|.|.|+.=.|+||+...|.|.+.
T Consensus        11 ~v~l~~T-RvI~~~---~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~   84 (233)
T PRK15246         11 AVNIDRT-RIIFAS---DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS   84 (233)
T ss_pred             EEEECce-EEEEcC---CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC
Confidence            4778885 888884   2234799999999886443332111      1    1499999999999999999999985

>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=85.11  E-value=17  Score=31.52  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-------CCcEEecCCceeeCCCCeEEEEEEeee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKFV  144 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa-------P~~Y~VrP~~GiL~Pgesi~I~Vtl~~  144 (198)
                      --+.+++. .+.|+.+   +....|+|.|..+.++.-.+..-.       ..-|.|.|+.=.|+||+...|.|.+..
T Consensus        27 A~v~i~~T-RiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~   99 (235)
T COG3121          27 AGVVLGGT-RIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTG   99 (235)
T ss_pred             eeEEecce-EEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecC
Confidence            35777875 7888743   234799999988889998866542       345999999999999999999999973

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.46  E-value=3.8  Score=30.86  Aligned_cols=52  Identities=17%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             CCeeEEEEEEECCCCCeEEEEEeeC-----C---CCcEEe-c------------CCceeeCCCCeEEEEEEee
Q 029170           92 GKQTRSAVRLKNTSKSHVAFKFQTT-----A---PKSCYM-R------------PPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        92 ~k~v~s~LtL~N~S~~~VAFKVKTT-----a---P~~Y~V-r------------P~~GiL~Pgesi~I~Vtl~  143 (198)
                      +...+..|+|+|.+++.+.|++.-.     .   .+.|.. .            |..=.|.||++..|.|++.
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~   79 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTIT   79 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEE
Confidence            3446789999999999999998654     0   122221 1            2222689999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PRK15290 lfpB fimbrial chaperone protein; Provisional

Probab=83.00  E-value=11  Score=32.93  Aligned_cols=65  Identities=6%  Similarity=0.122  Sum_probs=48.7

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCC-CeEEEEEeeCC---C----CcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTTA---P----KSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~-~~VAFKVKTTa---P----~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      --|.+++. .+.|+.   ++-...|+|+|.++ .+..-..-...   .    .-|.|.|+.-.|+||+...|.|...
T Consensus        37 Agv~l~~T-RvIy~~---~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~  109 (243)
T PRK15290         37 AGVVIGGT-RVVYLS---NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHT  109 (243)
T ss_pred             EeEEECce-EEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEc
Confidence            44888885 888884   22346999999986 46655554331   1    1399999999999999999999986

>PRK15195 fimbrial chaperone protein FimC; Provisional

Probab=82.59  E-value=11  Score=32.56  Aligned_cols=63  Identities=14%  Similarity=0.287  Sum_probs=46.8

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEee---CC----CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQT---TA----PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVKT---Ta----P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      --|.+++. .+.|+...   -...|+|.|.+++ +..  |++   ..    ..-|.|.|+.=-|+||+...|.|...
T Consensus        25 Agi~i~~T-RvIy~~~~---~~~si~l~N~~~~~~~L--vQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~   95 (229)
T PRK15195         25 GGIALGAT-RVIYPADA---KQTSLAIRNSHTNERYL--VNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYA   95 (229)
T ss_pred             eeEEECCe-EEEEeCCC---ceEEEEEEeCCCCccEE--EEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence            45888886 88888432   2379999999865 333  432   11    12499999999999999999999886

>PRK15254 fimbrial chaperone protein StdC; Provisional

Probab=82.37  E-value=30  Score=30.26  Aligned_cols=65  Identities=17%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeC-CC----CcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTT-AP----KSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVKTT-aP----~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      --|.+++. .+.|+.   ++....|+|.|.+++ ++.=..-.. ..    .-|.|.|+.-.|+||+...|.|...
T Consensus        16 A~v~l~~T-RvIy~~---~~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~   86 (239)
T PRK15254         16 AAVNVDRT-RIIMDA---PQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQV   86 (239)
T ss_pred             EeEEECce-EEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEc
Confidence            35778885 888884   223479999999864 554433221 11    2499999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		2e-04
1z9o_A	128	1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp		4e-04
1z9l_A	128	1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp		5e-04
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		7e-04

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  G++ PG ++  +V            QP D
Sbjct: 30  TNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----------LQPFD 79
Query: 157 ----QKSKDKFKIMSL 168
               +KSK KF + ++
Sbjct: 80  YDPNEKSKHKFMVQTI 95

>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  GV+ PG  +  +V            QP D
Sbjct: 31  TNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM----------LQPFD 80
Query: 157 ----QKSKDKFKIMSL 168
               +KSK KF + ++
Sbjct: 81  YDPNEKSKHKFMVQTI 96

>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  GV+ PG  +  +V            QP D
Sbjct: 31  TNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSV----------XLQPFD 80
Query: 157 ----QKSKDKFKIMSL 168
               +KSK KF + ++
Sbjct: 81  YDPNEKSKHKFXVQTI 96

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  G++ PG  +  +V            QP D
Sbjct: 35  TNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM----------LQPFD 84
Query: 157 ----QKSKDKFKIMSL 168
               +KSK KF + ++
Sbjct: 85  YDPNEKSKHKFMVQTI 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2cri_A	147	Vesicle-associated membrane protein-associated pro	9e-25
1z9l_A	128	Vesicle-associated membrane protein-associated pro	1e-24
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	6e-22
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	6e-19
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	2e-12
1row_A	109	SSP-19, MSP-domain protein like family member; bet	9e-10
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	3e-05
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 93.6 bits (232), Expect = 9e-25
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 64  SYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM 123
           S  +  +    + L LDP ++L F         + ++L+N S   V FK +TTAP+   +
Sbjct: 2   SSGSSGMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 61

Query: 124 RPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           RP  G++ PG  +       V           ++KSK KF + ++     I  +  +
Sbjct: 62  RPNSGIIDPGSIVT------VSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAV 112

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 92.4 bits (229), Expect = 1e-24
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 72  PPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLA 131
              + L LDP ++L F         + ++L+N S   V FK +TTAP+   +RP  GV+ 
Sbjct: 6   KHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 132 PGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
           PG  +       V           ++KSK KF + ++     I  +  +
Sbjct: 66  PGSIVT------VSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAV 108

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 86.3 bits (213), Expect = 6e-22
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L + P+  LYF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 19  LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSHI 184
              V              L   ++D+F IM+ +++      P  +S  
Sbjct: 79  DIIVSPH---------GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQF 117

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 77.6 bits (191), Expect = 6e-19
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           P   +   PS  + F      +    +++ N     + +  +TT  +   + PP GVL P
Sbjct: 5   PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDP 64

Query: 133 GDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGID 175
            + ++  V          +       + D+  I       G  
Sbjct: 65  KEKVLMAVSCDTFNAATED------LNNDRITIEWTNTPDGAA 101

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 60.6 bits (147), Expect = 2e-12
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           + +DP     +P   G  T     + + S S +AFK +++  +   +RP  G +      
Sbjct: 11  INVDPPT-GNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 66

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173
              +           R P   K +DK  I   +V   
Sbjct: 67  KLDIN----------RLPGPPK-EDKIVIQYAEVPAE 92

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 15/97 (15%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L  DP      P      T    +L N     + FK +++      + P  G + P  S 
Sbjct: 3   LTADPPA-CTVPAAGVSST---HKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 58

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173
              +           R       +DK  +        
Sbjct: 59  DVVIT----------RTA-GAPKEDKLVVHFASAPAD 84

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 76  RLRLDPSNNLYFPYEPGKQTRSA-VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD 134
           R  LD  + L F   P K +    + ++N    +  F  +T  P    + P  G L  G+
Sbjct: 23  RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRP--FSIEPAIGTLNVGE 80

Query: 135 SIIATV 140
           S+   V
Sbjct: 81  SMQLEV 86

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Length = 140

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 93  KQTRSAVRLKNTSKSHVAFKF------QTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
            Q     ++ N  +    F F                 P  G L P +++  ++  +V  
Sbjct: 44  LQKEK-FQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSK 102

Query: 147 PENNERQPLDQKSKDKFKIMSLKVKGGIDY 176
                    + K +D   I+ L +  G DY
Sbjct: 103 DSVTILNSGEDKIED---ILVLHLDRGKDY 129

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 31/190 (16%), Positives = 48/190 (25%), Gaps = 42/190 (22%)

Query: 9   RSNSDKKLFGFCPFWQT-STTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVA 67
            S   +    F  FW       +P +     Q L            + S      +  + 
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 68  RSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNT-SKSHV-AFKFQ-----TTAPKS 120
             L    RRL          PYE        + L N  +     AF        TT  K 
Sbjct: 232 AEL----RRLLKSK------PYE-----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 121 CYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQ-KSKDKF-KIMSLKVKGGIDYVP 178
                   V    D + A     +    ++    L   + K    K +  + +     +P
Sbjct: 277 --------VT---DFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQD----LP 319

Query: 179 ELVSHIGPFA 188
             V    P  
Sbjct: 320 REVLTTNPRR 329

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
1z9l_A	128	Vesicle-associated membrane protein-associated pro	99.97
2cri_A	147	Vesicle-associated membrane protein-associated pro	99.97
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.96
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.96
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.95
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.94
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.23
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.95
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.91
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.52
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	96.53
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	95.22
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	90.99
2xg5_A	218	PAPD, chaperone protein PAPD; chaperone, chaperone	90.35
2co7_B	221	SAFB chaperone, putative fimbriae assembly chapero	90.32
1klf_A	205	FIMC chaperone, chaperone protein FIMC; adhesin-ch	87.32
4djm_A	239	DRAB; chaperone, PILI; 2.52A {Escherichia coli}	86.12
4ay0_A	218	Chaperone protein CAF1M; amino acid motifs, bacter	85.72
1l4i_A	206	SFAE protein; periplasmic chaperone, immunoglobuli	83.94
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	81.04

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=99.97  E-value=7.7e-31  Score=204.58  Aligned_cols=110  Identities=28%  Similarity=0.425  Sum_probs=98.8

Q ss_pred             CCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCC
Q 029170           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (198)
Q Consensus        73 ~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~  152 (198)
                      .+++|.|+|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+++   |+..  
T Consensus         7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~---~~~~--   81 (128)
T 1z9l_A            7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ---PFDY--   81 (128)
T ss_dssp             CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEEC---CCCC--
T ss_pred             CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEEC---cCcC--
Confidence            46789999988999999999999999999999999999999999999999999999999999999999997   4432  


Q ss_pred             CCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCcE
Q 029170          153 QPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFA  188 (198)
Q Consensus       153 ~p~~~~~kDKFlVqs~~v~~~~d~~~elfk~~k~~v  188 (198)
                       .++.+++|||+||++.++++.+...++|++.++..
T Consensus        82 -~p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~  116 (128)
T 1z9l_A           82 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE  116 (128)
T ss_dssp             -CTTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGG
T ss_pred             -CcccccCCEEEEEEEECCCCcchHHHHhhcCCCCc
Confidence             23468999999999999988766799999887654

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.97  E-value=5.2e-31  Score=210.67  Aligned_cols=110  Identities=27%  Similarity=0.424  Sum_probs=98.8

Q ss_pred             CCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCC
Q 029170           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (198)
Q Consensus        73 ~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~  152 (198)
                      .+++|.|+|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+|+   |+..  
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~---~~~~--   85 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ---PFDY--   85 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEEC---CCCC--
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEEC---CCcC--
Confidence            56789999988999999999999999999999999999999999999999999999999999999999997   4432  


Q ss_pred             CCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCcE
Q 029170          153 QPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFA  188 (198)
Q Consensus       153 ~p~~~~~kDKFlVqs~~v~~~~d~~~elfk~~k~~v  188 (198)
                       +++++++|||+||++.++++.+...++|++.++.+
T Consensus        86 -~p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~  120 (147)
T 2cri_A           86 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE  120 (147)
T ss_dssp             -CTTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTT
T ss_pred             -CccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCc
Confidence             23468999999999999988766799999876543

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.96  E-value=1.8e-29  Score=203.37  Aligned_cols=110  Identities=25%  Similarity=0.358  Sum_probs=95.8

Q ss_pred             CCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCC
Q 029170           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (198)
Q Consensus        73 ~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~  152 (198)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|+|+   ++ .  
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq---~~-~--   88 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-L--   88 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-S--
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEec---Cc-c--
Confidence            46789999998999999999999999999999999999999999999999999999999999999999997   33 1  


Q ss_pred             CCCCCCCCCeEEEEEEEeC--CCC--CchhhhhhccCCcEEEE
Q 029170          153 QPLDQKSKDKFKIMSLKVK--GGI--DYVPELVSHIGPFAKYF  191 (198)
Q Consensus       153 ~p~~~~~kDKFlVqs~~v~--~~~--d~~~elfk~~k~~v~~~  191 (198)
                         +.+++|||+||++.++  ++.  +.+.++|++..+...+.
T Consensus        89 ---~~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e  128 (152)
T 1wic_A           89 ---TVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME  128 (152)
T ss_dssp             ---CCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEE
T ss_pred             ---cCCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEE
Confidence               1378999999999998  443  34689999876544333

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.96  E-value=6.7e-29  Score=194.20  Aligned_cols=106  Identities=18%  Similarity=0.285  Sum_probs=92.6

Q ss_pred             CCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCC
Q 029170           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQ  153 (198)
Q Consensus        74 ~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~  153 (198)
                      ...|.++|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+|+   ++..+  
T Consensus         6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q---~~~~~--   80 (126)
T 1msp_A            6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCD---TFNAA--   80 (126)
T ss_dssp             CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEEC---CCCGG--
T ss_pred             CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEec---CCCCC--
Confidence            4579999999999999999999999999999999999999999999999999999999999999999997   44332  


Q ss_pred             CCCCCCCCeEEEEEEEeCCCC--CchhhhhhccC
Q 029170          154 PLDQKSKDKFKIMSLKVKGGI--DYVPELVSHIG  185 (198)
Q Consensus       154 p~~~~~kDKFlVqs~~v~~~~--d~~~elfk~~k  185 (198)
                      +. ...+|||+||++.++++.  |+.++||..+.
T Consensus        81 ~~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~~d~  113 (126)
T 1msp_A           81 TE-DLNNDRITIEWTNTPDGAAKQFRREWFQGDG  113 (126)
T ss_dssp             GS-CCSSCEEEEEEEECCTTCCSSCCTHHHHSSS
T ss_pred             CC-ccCCCEEEEEEEECCCCcchhhhHHhhcCCC
Confidence            22 245999999999999886  68777776543

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.95  E-value=2.4e-27  Score=182.03  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=85.9

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p~~  156 (198)
                      |.|+|. +|.|.++.+   .+.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|+++   |+        
T Consensus         3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q---~~--------   67 (109)
T 1row_A            3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG--------   67 (109)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred             EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeC---CC--------
Confidence            789998 699998743   599999999999999999999999999999999999999999999997   32        


Q ss_pred             CCCCCeEEEEEEEeCCCCCchhhhhhccCCc
Q 029170          157 QKSKDKFKIMSLKVKGGIDYVPELVSHIGPF  187 (198)
Q Consensus       157 ~~~kDKFlVqs~~v~~~~d~~~elfk~~k~~  187 (198)
                      ..++|||+||++.++++...++++|++.++.
T Consensus        68 ~~~~dKflvq~~~~~~~~~d~~~~fk~~~~~   98 (109)
T 1row_A           68 APKEDKLVVHFASAPADATDAQAAFVAVAPA   98 (109)
T ss_dssp             CCEEEEEEEEEEECCTTCSCHHHHHTTCCCC
T ss_pred             CCCCCEEEEEEEECCCCCCCHHHHhhcCCCC
Confidence            2479999999999998876679999997654

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.94  E-value=6e-26  Score=176.38  Aligned_cols=97  Identities=20%  Similarity=0.267  Sum_probs=86.1

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCC
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQP  154 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p  154 (198)
                      ..+.++|. +|.|+.+.|   .+.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|+++   |+     +
T Consensus         9 ~~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q---~~-----~   76 (116)
T 1m1s_A            9 SMINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG-----P   76 (116)
T ss_dssp             CSEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC-----C
T ss_pred             eeeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeC---CC-----C
Confidence            35889996 999997643   699999999999999999999999999999999999999999999997   32     1


Q ss_pred             CCCCCCCeEEEEEEEeCCCCCchhhhhhccCC
Q 029170          155 LDQKSKDKFKIMSLKVKGGIDYVPELVSHIGP  186 (198)
Q Consensus       155 ~~~~~kDKFlVqs~~v~~~~d~~~elfk~~k~  186 (198)
                         .++|||+||++.++++...++++|++.++
T Consensus        77 ---~k~DKflVq~~~~~~d~~d~~~~fk~~~~  105 (116)
T 1m1s_A           77 ---PKEDKIVIQYAEVPAEETDPMAPFKAGAQ  105 (116)
T ss_dssp             ---SCEEEEEEEEEEECTTCCCTTHHHHTTCC
T ss_pred             ---CCCCEEEEEEEECCCCCCCHHHHHhcCCC
Confidence               46899999999999876556999999765

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=5.2e-06  Score=62.93  Aligned_cols=65  Identities=22%  Similarity=0.295  Sum_probs=55.3

Q ss_pred             CcEEEcCCCceEeeCC-CCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~-~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      -.|.+ | +.|.|..- .+......|.|+|.++.++.|++++.  .-|.|.|..|.|.||+++.|.|+..
T Consensus        24 ~~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~   89 (122)
T 2ys4_A           24 AILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFE   89 (122)
T ss_dssp             CCCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEEC
T ss_pred             cEECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEE
Confidence            33444 6 48888763 46777899999999999999999974  4799999999999999999999996

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.95  E-value=5.1e-05  Score=59.48  Aligned_cols=68  Identities=15%  Similarity=0.249  Sum_probs=58.1

Q ss_pred             CcEEEcCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeC------CCCcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~-~~~k~v~s~LtL~N~S~~~VAFKVKTT------aP~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      ..+.+++. +|.|-. .+++..+..|+|+|++.-+.-|++.-.      .+..+.|.|..|.|.||+++.|.|++.
T Consensus        25 P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~   99 (140)
T 3qbt_B           25 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY   99 (140)
T ss_dssp             CCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred             CceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence            45777875 999974 467778899999999999999999853      345699999999999999999999996

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=3.2e-05  Score=56.83  Aligned_cols=68  Identities=12%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             CcEEEcCCCceEeeCC-CCCeeEEEEEEECCCCCeEEEEEeeCCC---CcEEecCCceeeCCCCeEEEEEEee
Q 029170           75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAP---KSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~-~~k~v~s~LtL~N~S~~~VAFKVKTTaP---~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      ..+.+++. .|.|-.- .+...+..++|+|+++-++.|++.....   ..|.+.|..|.|+||++..|.|++.
T Consensus         8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~   79 (112)
T 2e6j_A            8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFS   79 (112)
T ss_dssp             CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEEC
T ss_pred             CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEE
Confidence            45888885 7888653 5777889999999999999999964221   4599999999999999999999996

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.52  E-value=0.00091  Score=59.71  Aligned_cols=69  Identities=16%  Similarity=0.253  Sum_probs=58.3

Q ss_pred             CcEEEcCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeCC------CCcEEecCCceeeCCCCeEEEEEEeee
Q 029170           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTA------PKSCYMRPPGGVLAPGDSIIATVFKFV  144 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~-~~~k~v~s~LtL~N~S~~~VAFKVKTTa------P~~Y~VrP~~GiL~Pgesi~I~Vtl~~  144 (198)
                      ..+.|++. +|.|.- .++...+..|+|+|++.-++.|++....      +..++|.|..|.|.||+++.|.|++..
T Consensus        28 P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v  103 (366)
T 3qis_A           28 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  103 (366)
T ss_dssp             CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence            45778885 999964 5788889999999999999999997542      344889999999999999999999973

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=96.53  E-value=0.012  Score=48.41  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             cEEEcCCCceEeeCC-CCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029170           76 RLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        76 ~L~v~P~~~L~F~~~-~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      .|+++|. .|.|..- .|+.....++++|+++.++-++.... |....+++..+.|+||++..|.|++.
T Consensus         2 ~i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~   68 (220)
T 2qsv_A            2 PLQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLA   68 (220)
T ss_dssp             CEEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEEC
T ss_pred             ceEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEc
Confidence            3889995 9999863 45666679999999999999987543 88889999999999999999999996

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=95.22  E-value=0.091  Score=43.16  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=56.8

Q ss_pred             CCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEE-EEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029170           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF-KFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        74 ~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAF-KVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      ...|.++ . .+.|-.-.|+..+..++|+|+++.++.+ +|+++. +-..+.+..+.|+||++..|.|++.
T Consensus       117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~  184 (220)
T 2qsv_A          117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVD  184 (220)
T ss_dssp             CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEEC
T ss_pred             CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEe
Confidence            3468888 4 8888743377888999999999999888 788765 6888899999999999999999996

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=90.99  E-value=2  Score=36.46  Aligned_cols=64  Identities=17%  Similarity=0.240  Sum_probs=47.7

Q ss_pred             cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC------C----CcEEecCCceeeCCCCeEEEEEEee
Q 029170           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa------P----~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      -|.|+|. .+.|+.. .+  ...|+|+|.++.++.-.+-...      |    .-|.|.|+.-.|+||+...|.|...
T Consensus        29 ~v~i~~T-RvIy~~~-~k--~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~  102 (257)
T 3q48_A           29 GLIAQGT-RVVFPAS-ER--EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYL  102 (257)
T ss_dssp             --CCSCS-EEEEETT-CS--EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred             eEEEcce-EEEEeCC-Cc--EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEEC
Confidence            4778885 8888743 22  3799999999987766554322      1    1399999999999999999999875

>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A

Probab=90.35  E-value=2.3  Score=35.16  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeCC-------CCcEEecCCceeeCCCCeEEEEEEeee
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKFV  144 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVKTTa-------P~~Y~VrP~~GiL~Pgesi~I~Vtl~~  144 (198)
                      |.+++. .+.|+...   -...|+|+|.++. ++.-.+....       ..-|.|.|+.-.|+||+...|.|.+..
T Consensus         2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~   73 (218)
T 2xg5_A            2 VSLDRT-RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTP   73 (218)
T ss_dssp             EEESCS-EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECG
T ss_pred             cEeCce-EEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecC
Confidence            567775 88888532   2469999999988 7766654422       224999999999999999999998863

>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B

Probab=90.32  E-value=2  Score=35.57  Aligned_cols=64  Identities=11%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      -|.+++. .+.|+... +  ...|+|+|.++.++.-.+....     ..-|.|.|+.-.|+||+...|.|.+.
T Consensus        13 ~v~i~~T-RvIy~~~~-k--~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~   81 (221)
T 2co7_B           13 SVKLGAT-RVIYHAGT-A--GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT   81 (221)
T ss_dssp             ECEESCS-EEEEETTS-S--CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred             EEEEcce-EEEEcCCC-C--EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEEC
Confidence            3678885 88888532 2  3699999999887766554321     12499999999999999999999886

>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C

Probab=87.32  E-value=3.4  Score=33.78  Aligned_cols=63  Identities=8%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEEe-e
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFK-F  143 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vtl-~  143 (198)
                      |.+++. .+.|+...   -...|+|+|.++. ++.-.+-...     ..-|.|.|+.-.|+||+...|.|.+ .
T Consensus         2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~   71 (205)
T 1klf_A            2 VALGAT-RVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDAT   71 (205)
T ss_dssp             EEESCS-EEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECS
T ss_pred             eEecce-EEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecC
Confidence            567775 88888532   3469999999987 7666653321     2349999999999999999999988 5

>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}

Probab=86.12  E-value=8.7  Score=32.19  Aligned_cols=64  Identities=13%  Similarity=0.154  Sum_probs=48.1

Q ss_pred             cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      -|.|++. .+.|+... +  ...|+|+|.++.++.-.+-...     ..-|.|.|+.-.|+||+...|.|.+.
T Consensus        23 ~v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~   91 (239)
T 4djm_A           23 SLHLGAT-RVVYNPAS-S--GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRT   91 (239)
T ss_dssp             CCEESCS-EEEECTTS-S--CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred             eEEEcce-EEEEeCCC-C--EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence            3778885 88887532 2  3699999999887654443211     22499999999999999999999875

>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A

Probab=85.72  E-value=6.3  Score=32.55  Aligned_cols=64  Identities=16%  Similarity=0.183  Sum_probs=48.0

Q ss_pred             cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-------CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa-------P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      -|.|+-. .+.|+.. .+  ...|+|+|.++.++.-......       ..-|.|.|+.-.|+||+...|.|...
T Consensus        13 gv~l~~T-RvIy~~~-~k--~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~   83 (218)
T 4ay0_A           13 GVTIGES-RIIYPLD-AA--GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQA   83 (218)
T ss_dssp             CEEESCC-EEEEETT-CS--CEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred             eEEECce-EEEECCC-Cc--EEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEec
Confidence            3677764 8888742 22  3689999999888665544311       12399999999999999999999885

>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1

Probab=83.94  E-value=5.1  Score=32.68  Aligned_cols=63  Identities=10%  Similarity=0.124  Sum_probs=47.7

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCC-CeEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEE-ee
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVF-KF  143 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~-~~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vt-l~  143 (198)
                      |.+++. .+.|+...   -...|+|+|.++ .++.-.+-...     ..-|.|.|+.-.|+||+...|.|. +.
T Consensus         2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~   71 (206)
T 1l4i_A            2 VALGAT-RVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDAT   71 (206)
T ss_dssp             EEESCS-EEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECC
T ss_pred             eEeCce-EEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecC
Confidence            567775 88888532   346999999986 77666654321     234999999999999999999998 64

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=81.04  E-value=11  Score=34.18  Aligned_cols=68  Identities=19%  Similarity=0.252  Sum_probs=52.2

Q ss_pred             CCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEe----------------------cCCceee
Q 029170           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM----------------------RPPGGVL  130 (198)
Q Consensus        73 ~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~V----------------------rP~~GiL  130 (198)
                      ....+.++.. .-.|.. +|+..+-.|+++|.++++|-..==+|+.-+|.-                      .|+ .=|
T Consensus       246 ~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI  322 (382)
T 1yew_A          246 PAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPL  322 (382)
T ss_dssp             CCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCB
T ss_pred             CCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCc
Confidence            4666777775 666665 688999999999999999988866666656533                      222 238


Q ss_pred             CCCCeEEEEEEee
Q 029170          131 APGDSIIATVFKF  143 (198)
Q Consensus       131 ~Pgesi~I~Vtl~  143 (198)
                      +|||+.+|.|..+
T Consensus       323 ~PGETr~~~v~a~  335 (382)
T 1yew_A          323 APGETRTVDVTAS  335 (382)
T ss_dssp             CTTCEEEEEEEEE
T ss_pred             CCCceeEEEEEee
Confidence            9999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	1e-21
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	7e-18
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	3e-17
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	1e-16

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.2 bits (208), Expect = 1e-21
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L + P+  LYF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 19  LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
              V              L   ++D+F IM+ +++      P 
Sbjct: 79  DIIVSPH---------GGLTVSAQDRFLIMAAEMEQSSGTGPA 112

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.3 bits (180), Expect = 7e-18
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           + +DP     +P   G  T     + + S S +AFK +++  +   +RP  G +      
Sbjct: 4   INVDP-PTGNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 59

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
              +           R P   K +DK  I   +V          
Sbjct: 60  KLDIN----------RLPGPPK-EDKIVIQYAEVPAEETDPMAP 92

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.3 bits (177), Expect = 3e-17
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           P   ++  P   + F      +    +++ N+S   + +  +TT  K   + PP GVL P
Sbjct: 3   PPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDP 62

Query: 133 GDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173
            ++++  V        +      +  + D+  +       G
Sbjct: 63  KEAVLLAVSC------DAFAFGQEDTNNDRITVEWTNTPDG 97

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 69.9 bits (171), Expect = 1e-16
 Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L  DP         P     S  +L N     + FK +++      + P  G + P  S 
Sbjct: 1   LTADPPACTV----PAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 56

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGP 186
              +           R       +DK  +                  + P
Sbjct: 57  DVVIT----------RTA-GAPKEDKLVVHFASAPADATDAQAAFVAVAP 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.95
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.94
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.93
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.91
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	94.04
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	93.55
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	91.37
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	91.15
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	90.94

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.8e-27  Score=182.40  Aligned_cols=107  Identities=17%  Similarity=0.285  Sum_probs=92.1

Q ss_pred             CCCCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCc
Q 029170           71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENN  150 (198)
Q Consensus        71 ~p~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~  150 (198)
                      +|++ .|.++|.++|+|++++++.+++.|+|+|+++++||||||||+|++|+|+|+.|+|+||+++.|.|+|+   |++.
T Consensus         2 ~p~~-~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~~---~~~~   77 (124)
T d1grwa_           2 VPPG-DIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCD---AFAF   77 (124)
T ss_dssp             CCCC-CEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---CCCG
T ss_pred             cCCC-ceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEEe---cCCC
Confidence            4444 59999999999999999999999999999999999999999999999999999999999999999997   4332


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCCC--CchhhhhhccC
Q 029170          151 ERQPLDQKSKDKFKIMSLKVKGGI--DYVPELVSHIG  185 (198)
Q Consensus       151 e~~p~~~~~kDKFlVqs~~v~~~~--d~~~elfk~~k  185 (198)
                      .   ...+++|||+|+++.++++.  ++ .+.|+...
T Consensus        78 ~---~~~~~~dkF~v~~~~~p~~~~~~~-~~~w~~~~  110 (124)
T d1grwa_          78 G---QEDTNNDRITVEWTNTPDGAAKQF-RREWFQGD  110 (124)
T ss_dssp             G---GSCCTTCEEEEEEEECCSSCCSSC-CGGGGTSS
T ss_pred             C---CcccCCceEEEEEEECCCccHHHH-HHHHhccC
Confidence            2   34578999999999998665  45 55566544

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.5e-27  Score=186.24  Aligned_cols=103  Identities=26%  Similarity=0.413  Sum_probs=91.8

Q ss_pred             CCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCC
Q 029170           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQ  153 (198)
Q Consensus        74 ~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~  153 (198)
                      +.+|.|+|.++|+|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|+++   +.     
T Consensus        16 ~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~---~~-----   87 (152)
T d1wica_          16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-----   87 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-----
T ss_pred             CCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEEC---CC-----
Confidence            6789999998999999999999999999999999999999999999999999999999999999999996   22     


Q ss_pred             CCCCCCCCeEEEEEEEeCCCCC----chhhhhhccC
Q 029170          154 PLDQKSKDKFKIMSLKVKGGID----YVPELVSHIG  185 (198)
Q Consensus       154 p~~~~~kDKFlVqs~~v~~~~d----~~~elfk~~k  185 (198)
                       ....++|||+|+++.+++..+    .+.++|++..
T Consensus        88 -~~~~~kdKFli~~~~v~~~~~~~~~d~~~~wk~~~  122 (152)
T d1wica_          88 -LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVP  122 (152)
T ss_dssp             -SCCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSC
T ss_pred             -CcccCCCcEEEEEEEeCCCCCCCccCHHHHhhcCC
Confidence             335689999999999976652    3578999753

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=2.4e-25  Score=168.82  Aligned_cols=100  Identities=18%  Similarity=0.230  Sum_probs=88.6

Q ss_pred             CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCC
Q 029170           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQP  154 (198)
Q Consensus        75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p  154 (198)
                      .+|.|+|. +|.|+++.|   .+.++|+|.++.+||||||||+|++|+|+|+.|+|+||++++|.|+++   |+      
T Consensus         2 ~~L~i~P~-~l~F~~~~g---~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~~---~~------   68 (109)
T d1m1sa_           2 SMINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG------   68 (109)
T ss_dssp             CSEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC------
T ss_pred             ceEEEeCC-EEEeecCCC---cEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEeC---CC------
Confidence            47999996 999997755   478999999999999999999999999999999999999999999996   33      


Q ss_pred             CCCCCCCeEEEEEEEeCCCCCchhhhhhccCCcEE
Q 029170          155 LDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFAK  189 (198)
Q Consensus       155 ~~~~~kDKFlVqs~~v~~~~d~~~elfk~~k~~v~  189 (198)
                        ...+|||+|+++.++++.+..+++|++.++.-.
T Consensus        69 --~~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~~~  101 (109)
T d1m1sa_          69 --PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQGE  101 (109)
T ss_dssp             --CSCEEEEEEEEEEECTTCCCTTHHHHTTCCCEE
T ss_pred             --CCCCCEEEEEEEECCCCCcCHHHHHhcCCCCCc
Confidence              136899999999999998777999999887643

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=7.5e-25  Score=165.95  Aligned_cols=95  Identities=17%  Similarity=0.242  Sum_probs=84.8

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p~~  156 (198)
                      |.++|. +|.|+...   ..+.++|+|.++.+||||||||+|++|+|+|+.|+|+||+++.|.|+++   |+        
T Consensus         1 l~~dP~-~~~f~~~~---g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~~---~~--------   65 (107)
T d1rowa_           1 LTADPP-ACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG--------   65 (107)
T ss_dssp             CEEESS-SEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred             CeeCCC-cceeeCCC---CeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEeC---CC--------
Confidence            679998 89998654   4689999999999999999999999999999999999999999999996   32        


Q ss_pred             CCCCCeEEEEEEEeCCCCCchhhhhhccCC
Q 029170          157 QKSKDKFKIMSLKVKGGIDYVPELVSHIGP  186 (198)
Q Consensus       157 ~~~kDKFlVqs~~v~~~~d~~~elfk~~k~  186 (198)
                      ...+|||+||++.++++.+...++|++.+.
T Consensus        66 ~~~~DKf~I~~~~~~~~~~d~~~~fk~~~~   95 (107)
T d1rowa_          66 APKEDKLVVHFASAPADATDAQAAFVAVAP   95 (107)
T ss_dssp             CCEEEEEEEEEEECCTTCSCHHHHHTTCCC
T ss_pred             CCCCCEEEEEEEECCCCCcCHHHHhhcCCC
Confidence            246899999999999998778999998654

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.04  E-value=0.2  Score=36.31  Aligned_cols=63  Identities=11%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEEee
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      |.|++. .+.|....   -...|+|+|.++.+....+....     ..-|.|.|+.-.|+||+...|.|...
T Consensus         7 v~l~~T-Rvi~~~~~---~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~~   74 (128)
T d2co7b1           7 VKLGAT-RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT   74 (128)
T ss_dssp             CEESCS-EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred             EEECCe-EEEEcCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEec
Confidence            567775 88887422   34799999999998777665432     23599999999999999999999975

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=93.55  E-value=0.33  Score=35.78  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=58.5

Q ss_pred             cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCC-------CcEEecCCceeeCCCCeEEEEEEeeecCCC
Q 029170           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-------KSCYMRPPGGVLAPGDSIIATVFKFVEAPE  148 (198)
Q Consensus        76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP-------~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~  148 (198)
                      -|.|+.. .+.|+.. .+  ...|+|+|.++.++...+.....       .-|.|.|+.-.|+||+...|.|.....   
T Consensus         7 Gv~l~~T-RvIy~~~-~~--~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~~~~---   79 (141)
T d1p5va1           7 GVTIGES-RIIYPLD-AA--GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG---   79 (141)
T ss_dssp             EEEESCS-EEEEETT-CS--CEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEECSC---
T ss_pred             eeEeCcc-EEEEcCC-Cc--EEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEecCC---
Confidence            3677875 8888853 22  36899999999998888866432       229999999999999999999986411   


Q ss_pred             CcCCCCCCCCCCCeEEEEEEEeCCCC
Q 029170          149 NNERQPLDQKSKDKFKIMSLKVKGGI  174 (198)
Q Consensus       149 ~~e~~p~~~~~kDKFlVqs~~v~~~~  174 (198)
                         ..|.+  ..--|.+....+|+..
T Consensus        80 ---~lP~D--rEslf~l~i~~IP~~~  100 (141)
T d1p5va1          80 ---VFPRD--KESLKWLCVKGIPPKD  100 (141)
T ss_dssp             ---CCCSS--SCEEEEEEEEEEC---
T ss_pred             ---CCCCc--ceEEEEEEEEEcCCCC
Confidence               11222  2234666666666543

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.37  E-value=1.3  Score=31.57  Aligned_cols=63  Identities=16%  Similarity=0.194  Sum_probs=45.5

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeCC--C-----CcEEecCCceeeCCCCeEEEEEEee
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA--P-----KSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVKTTa--P-----~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      +.|+.. .+.|+..   +-...++|+|.+++ ++.-......  .     .-|.|.|+.-.|+||+...|.|.+.
T Consensus         2 i~l~~T-RvI~~~~---~~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~~   72 (124)
T d2j2za1           2 VSLDRT-RAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT   72 (124)
T ss_dssp             EEESCS-EEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEEC
T ss_pred             eEeCCc-EEEEeCC---CCEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEEc
Confidence            556664 8888742   23479999998775 5444433321  1     2299999999999999999999885

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=91.15  E-value=0.43  Score=33.38  Aligned_cols=53  Identities=25%  Similarity=0.227  Sum_probs=45.4

Q ss_pred             CCCeeEEEEEEECCCCCeEE-EEEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029170           91 PGKQTRSAVRLKNTSKSHVA-FKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        91 ~~k~v~s~LtL~N~S~~~VA-FKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      +|+.+.-.++++|.....+. .++....|.-+.+.|..--|+||++..+.+.+.
T Consensus        15 pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt   68 (103)
T d1w8oa1          15 PGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTIT   68 (103)
T ss_dssp             TTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEE
T ss_pred             CCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEE
Confidence            68888899999999887553 456667899999999888999999999999996

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=90.94  E-value=1.5  Score=31.13  Aligned_cols=63  Identities=10%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             EEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEe-----eCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029170           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQ-----TTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (198)
Q Consensus        77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVK-----TTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~  143 (198)
                      |.++.. .+.|+..   +-...++|+|.+++ +..-...     .+....|.|.|+.-.|+||+...|.|...
T Consensus         2 i~l~~T-RvI~~~~---~~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~~   70 (121)
T d3bwuc1           2 VALGAT-RVIYPAG---QKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDA   70 (121)
T ss_dssp             EEESCS-EEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEEC
T ss_pred             eeECce-EEEEcCC---CceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEec
Confidence            456664 7888742   23479999998764 4432221     13344699999999999999999999875