Citrus Sinensis ID: 029183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQFGRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLEIVSGVVLFHVYLYKII
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccEEEcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHccccccccccHHHHHHHHHHcccccHEEEEEccccccccccEEcHHHHHcccHHccccccccccHHHccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MLVIVLMMIsssgtmadkakdreectnqlvglstclpyvggdakaptpdccsglkqvlkndkkCLCVIirdrndpelglnINVTLAlglpsvchapanvsqcpallhldpnspeaqvfyqfgrnpssphtvitstptpsptaaggggknpisadsssnnrgarvqgtsdgccignrwsgleIVSGVVLFHVYLYKII
Flexible Loop (DISEMBL)
MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRdrndpelgLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQFGRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLEIVSGVVLFHVYLYKII
Low Complexity Region (SEG)
MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQFGRNpssphtvitstptpsptAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLEIVSGVVLFHVYLYKII
Disordered region (IsUnstruct)
**VIVLMMI***************CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDP****AQVFYQF***********************************************DGCCIGNRWSGLEIVSGVVLFHVYLYKI*
Disordered Region (DISOPRED)
MLVIVLMMISSSG**************QLVGLSTCLPYVG*DAKAPT*DCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVS***************************************************************************RWSGLEIVSGVVLFHVYLYKII
Disordered Region (DISEMBL)
MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQFGRNPSS****************************************SDGCCIGNRWSGLEIVSGVVLFHVYLYKII
Disordered Region (DISPRO)
MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPE********************************************************CCIGNRWSGLEIVSGVVLFHVYLYKII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQFGRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLEIVSGVVLFHVYLYKII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q9C7F7	193	Uncharacterized GPI-ancho	no	no	0.883	0.901	0.272	4e-09
Q8VYI9	182	Non-specific lipid-transf	no	no	0.385	0.417	0.385	2e-08
Q9ZQI8	169	Non-specific lipid-transf	no	no	0.461	0.538	0.333	2e-07
Q9FFY3	151	Lipid transfer-like prote	no	no	0.487	0.635	0.313	0.0005

>sp|Q9C7F7|UGPI5_ARATH Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 28/202 (13%)

Query: 2   LVIVLMMISSS----GTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQV 57
           LV+V M I +S       A      +EC      ++ CL +  G A  P+  CC  ++ +
Sbjct: 8   LVLVTMTIVASIAAAAPAAPGGALADECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDI 67

Query: 58  LKNDKKCLCVIIRDRN---DPELGLNINVTLALGLPSVCHAP-ANVSQCPALLHLDPNSP 113
            + D KCLC +I+           L +     + LP+ C    A+++ CP LL + P+SP
Sbjct: 68  KERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPSSP 127

Query: 114 EAQVFYQFGRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCI 173
           +A VF              T+  T +P A    GK+P +  +S++  G+      DG  +
Sbjct: 128 DAAVF--------------TNNATTTPVAP--AGKSPATPATSTDKGGSA--SAKDGHAV 169

Query: 174 GNRWSGLEIVSGVVLF--HVYL 193
                 L  VS V+    HV L
Sbjct: 170 VALAVALMAVSFVLTLPRHVTL 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYI9|NLTL5_ARATH Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 24  ECTNQLVGLSTCLPYV--GGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNI 81
           +C+  ++ ++ CL +V  GG    P   CCSGLK VLK D +CLC     ++   LG+ +
Sbjct: 42  DCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAF--KSSASLGVTL 99

Query: 82  NVTLALGLPSVC--HAPANVSQC 102
           N+T A  LP+ C  HAP +++ C
Sbjct: 100 NITKASTLPAACKLHAP-SIATC 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQI8|NLTL2_ARATH Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 5  VLMMISSSGTMA-DKAKDREECTNQLVGLSTCLPYV--GGDAKAPTPDCCSGLKQVLKND 61
          +LM+ S    M+ ++A    +C++ ++ ++ CL +V  G     P   CCSGLK V++  
Sbjct: 6  ILMIFSVVALMSGERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTG 65

Query: 62 KKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPA 97
           +CLC     +N   LGL ++++ A  LPSVC   A
Sbjct: 66 PECLCEAF--KNSGSLGLTLDLSKAASLPSVCKVAA 99

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFY3|VAS_ARATH Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 2   LVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKND 61
             +VL+++++S  M    +    C NQL   + CL Y+ G  + P   CC+ LK V++N+
Sbjct: 10  FYVVLLLVAASSGMRINGQS-VSCLNQL---APCLNYLNGTKEVPQV-CCNPLKSVIRNN 64

Query: 62  KKCLCVIIRDRNDPELG-LNINVTLALGLPSVCHAPANVSQC 102
            +CLC +I +R   +     I+V  A  LP+ C    N   C
Sbjct: 65  PECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIAC 106

Promotes the number of phloem (pro)cambial and pericycle cells.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
225450281	188	PREDICTED: uncharacterized GPI-anchored	0.847	0.888	0.610	2e-53
224120938	197	predicted protein [Populus trichocarpa]	0.893	0.893	0.615	3e-53
15224862	205	xylogen-like protein 10 [Arabidopsis tha	0.954	0.917	0.528	4e-53
297828151	205	protease inhibitor/seed storage/lipid tr	0.934	0.897	0.556	2e-52
147790626	595	hypothetical protein VITISV_016657 [Viti	0.715	0.236	0.689	2e-52
297828149	205	protease inhibitor/seed storage/lipid tr	0.944	0.907	0.517	3e-50
15224863	204	xylogen-like protein 10 [Arabidopsis tha	0.857	0.828	0.570	7e-50
358249266	195	uncharacterized protein LOC100792950 pre	0.862	0.871	0.573	3e-49
255630530	193	unknown [Glycine max]	0.852	0.870	0.557	1e-47
255542275	133	lipid binding protein, putative [Ricinus	0.553	0.819	0.807	3e-47

>gi|225450281|ref|XP_002270671.1| PREDICTED: uncharacterized GPI-anchored protein At1g27950 [Vitis vinifera] gi|297741205|emb|CBI32156.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 139/185 (75%), Gaps = 18/185 (9%)

Query: 1   MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN 60
           +LVIV M+I+     +D AKD++ECT QLVG++TCLPYVGGDAKAPTPDCCSGLKQVL+ 
Sbjct: 9   ILVIVSMVITC--VTSDSAKDKQECTEQLVGMATCLPYVGGDAKAPTPDCCSGLKQVLQK 66

Query: 61  DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQ 120
           +KKCLCVII+DRNDP+LGLN+N TLALGLPSVCHAPANVSQCPALLHL PNSP+AQVFYQ
Sbjct: 67  NKKCLCVIIKDRNDPDLGLNLNATLALGLPSVCHAPANVSQCPALLHLAPNSPDAQVFYQ 126

Query: 121 FGRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGL 180
           F  + +      T++ TPS   +        ++ +S+N++G   QG   GCC G +W  L
Sbjct: 127 FANSSNG-----TASSTPSTVKS--------NSSASANSKGVSAQG---GCCNGKKWLNL 170

Query: 181 EIVSG 185
           E   G
Sbjct: 171 EFAVG 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120938|ref|XP_002330863.1| predicted protein [Populus trichocarpa] gi|222872685|gb|EEF09816.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 136/195 (69%), Gaps = 19/195 (9%)

Query: 1   MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN 60
           M  IVLM +  S  MA K KD EEC  QLVGL+TCLPYVGGDAKAPTPDCC+GLKQVLK+
Sbjct: 14  MFGIVLMSVMVSLAMAGKDKDSEECAEQLVGLATCLPYVGGDAKAPTPDCCNGLKQVLKD 73

Query: 61  DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQ 120
           +KKCLCVII+DRNDPELGL IN TLAL LPSVCHAPANVSQCPALL+L PNSP+AQ+FYQ
Sbjct: 74  NKKCLCVIIKDRNDPELGLKINATLALSLPSVCHAPANVSQCPALLNLPPNSPDAQIFYQ 133

Query: 121 FGRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGL 180
                SS H  I S+P  SP+    GG  P         +G   Q  S+GC  G    GL
Sbjct: 134 LAN--SSNH--IASSPALSPSP---GGAQP---------QGRSAQQESNGCHSGKINFGL 177

Query: 181 EIVSGVVL---FHVY 192
           +I S  VL   F++Y
Sbjct: 178 QIASLGVLGWCFNIY 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224862|ref|NP_181958.1| xylogen-like protein 10 [Arabidopsis thaliana] gi|3128175|gb|AAC16079.1| unknown protein [Arabidopsis thaliana] gi|26451353|dbj|BAC42777.1| putative non-specific lipid transfer protein nLTP [Arabidopsis thaliana] gi|28973215|gb|AAO63932.1| unknown protein [Arabidopsis thaliana] gi|84778476|dbj|BAE73265.1| xylogen like protein 9 [Arabidopsis thaliana] gi|330255310|gb|AEC10404.1| xylogen-like protein 10 [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 141/193 (73%), Gaps = 5/193 (2%)

Query: 2   LVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKND 61
           L++V M++ ++G  ADK KD+EECT QLVG++TCLPYV G AK+PTPDCCSGLKQV+ +D
Sbjct: 15  LIMVAMVVDAAG--ADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINSD 72

Query: 62  KKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQF 121
            KCLC+II++RNDP+LGL +NV+LAL LPSVCHA A++++CPALLHLDPNSP+AQVFYQ 
Sbjct: 73  MKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPALLHLDPNSPDAQVFYQL 132

Query: 122 GRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLE 181
            +  +   TV  S PT S +        P S+  +++ R   V GT+       +W GLE
Sbjct: 133 AKGLN--ETVSASAPTGSASEPTSMSSTPGSSAGNNSGRTTSVPGTNHAQSFSKQWLGLE 190

Query: 182 IVSG-VVLFHVYL 193
           +V+   V+F++++
Sbjct: 191 VVAHFFVIFYIFI 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828151|ref|XP_002881958.1| protease inhibitor/seed storage/lipid transfer protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297327797|gb|EFH58217.1| protease inhibitor/seed storage/lipid transfer protein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/203 (55%), Positives = 141/203 (69%), Gaps = 19/203 (9%)

Query: 1   MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN 60
           +L++V+ M+  +G   DKAKD+EECT QLVG++TCLPYV G AK+PTPDCCSGLKQVL +
Sbjct: 14  VLIMVVAMVVDAGD--DKAKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGLKQVLNS 71

Query: 61  DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQ 120
           +KKCLCVII+DRNDP+LGL INV+LAL LPSVCHA A+V++CPALLHLDPNSP+AQVFYQ
Sbjct: 72  NKKCLCVIIQDRNDPDLGLQINVSLALALPSVCHATADVTKCPALLHLDPNSPDAQVFYQ 131

Query: 121 FGR-----NPSSPHTVITSTPTP-SPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIG 174
             +     +P+S  T + S PT  SPTA    G N        + R   V G ++     
Sbjct: 132 LAKGSNKTSPASAPTGLASGPTSMSPTAGSDDGNN--------SGRTTSVPGRNNAQSFY 183

Query: 175 NRWSGLEIVSGVVLFHVYLYKII 197
            +W GLE+   VV F V  Y  I
Sbjct: 184 KQWLGLEV---VVHFFVICYIFI 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790626|emb|CAN59826.1| hypothetical protein VITISV_016657 [Vitis vinifera]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/148 (68%), Positives = 120/148 (81%), Gaps = 7/148 (4%)

Query: 1   MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN 60
           +LVIV M+I+     +D AKD++ECT QLVG++TCLPYVGGDAKAPTPDCCSGLKQVL+ 
Sbjct: 9   ILVIVSMVITC--VTSDSAKDKQECTEQLVGMATCLPYVGGDAKAPTPDCCSGLKQVLQK 66

Query: 61  DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQ 120
           +KKCLCVII+DRNDP+LGLN+N TLALGLPSVCHAPANVSQCPALLHL PNSP+AQVFYQ
Sbjct: 67  NKKCLCVIIKDRNDPDLGLNLNATLALGLPSVCHAPANVSQCPALLHLAPNSPDAQVFYQ 126

Query: 121 FGRNPSSPHTVITSTPTPSPTAAGGGGK 148
           F  + +      T++ TPS      G K
Sbjct: 127 FANSSNG-----TASSTPSTGLHTHGAK 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828149|ref|XP_002881957.1| protease inhibitor/seed storage/lipid transfer protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297327796|gb|EFH58216.1| protease inhibitor/seed storage/lipid transfer protein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/195 (51%), Positives = 137/195 (70%), Gaps = 9/195 (4%)

Query: 2   LVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKND 61
           L++V+ M+  +G   DK KD+E CT +LVG++TCLPYV G AK+PTPDCCSGLKQVL +D
Sbjct: 15  LIMVVAMVVDAGD--DKEKDKEGCTEKLVGMATCLPYVQGQAKSPTPDCCSGLKQVLNSD 72

Query: 62  KKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQF 121
            KCLCVII+DRNDP+LGL +NV+LALGLPSVCHA A++++CPALLHLDP SPEA VFYQ 
Sbjct: 73  MKCLCVIIQDRNDPDLGLQVNVSLALGLPSVCHATADITKCPALLHLDPKSPEAHVFYQL 132

Query: 122 --GRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSG 179
             G N + P +  T +  P PT+       P S D +++ R     G +       +W G
Sbjct: 133 AKGLNETGPASAPTGS-APEPTSM---SSTPASGDGNNSGRTTSAPGRNHAQSFSKQWLG 188

Query: 180 LEIVSG-VVLFHVYL 193
           +E+V+   V+F++++
Sbjct: 189 IEVVAHFFVIFYIFI 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224863|ref|NP_181959.1| xylogen-like protein 10 [Arabidopsis thaliana] gi|3128176|gb|AAC16080.1| unknown protein [Arabidopsis thaliana] gi|30017223|gb|AAP12845.1| At2g44300 [Arabidopsis thaliana] gi|84778478|dbj|BAE73266.1| xylogen like protein 10 [Arabidopsis thaliana] gi|330255311|gb|AEC10405.1| xylogen-like protein 10 [Arabidopsis thaliana]

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 105/184 (57%), Positives = 131/184 (71%), Gaps = 15/184 (8%)

Query: 17  DKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPE 76
           DK KD+EECT QLVG++TCLPYV G AK+PTPDCCSGLKQVL ++KKCLCVII+DRNDP+
Sbjct: 27  DKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGLKQVLNSNKKCLCVIIQDRNDPD 86

Query: 77  LGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQF--GRNPSSPHTVIT- 133
           LGL INV+LAL LPSVCHA A+V++CPALLHLDPNSP+AQVFYQ   G N + P +  T 
Sbjct: 87  LGLQINVSLALALPSVCHAAADVTKCPALLHLDPNSPDAQVFYQLAKGLNKTGPASAPTG 146

Query: 134 STPTP---SPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLEIV-SGVVLF 189
           S+P P   SPT+    G N        + R   V G +       +W GLE+V    V+F
Sbjct: 147 SSPGPISISPTSGSDDGNN--------SGRTTSVPGRNHAQSFYKQWLGLEVVFHFFVIF 198

Query: 190 HVYL 193
           ++++
Sbjct: 199 YIFI 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249266|ref|NP_001240276.1| uncharacterized protein LOC100792950 precursor [Glycine max] gi|255647200|gb|ACU24068.1| unknown [Glycine max]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 126/183 (68%), Gaps = 13/183 (7%)

Query: 3   VIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDK 62
            ++L  I     M D +KD+EECT QL GL+TCLPYVGG A+APTPDCCSGLKQVLKN+K
Sbjct: 12  FMLLTTIVVGIAMGDSSKDKEECTEQLAGLATCLPYVGGQAQAPTPDCCSGLKQVLKNNK 71

Query: 63  KCLCVIIRDRNDPEL-GLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQF 121
           KCLCVII+DRNDP+L GL INVTLAL LP+ C++P NVS+CP LLH+DP S EAQVFYQ 
Sbjct: 72  KCLCVIIKDRNDPDLGGLQINVTLALNLPTACNSPVNVSKCPELLHMDPKSAEAQVFYQL 131

Query: 122 GRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLE 181
            + PS   T     P PSP+AA G         S S+N+ A     +D  C   R  GLE
Sbjct: 132 EKGPSKNGT----GPAPSPSAAVGA--------SPSSNQKANTPQKNDAFCKEKRLFGLE 179

Query: 182 IVS 184
           I++
Sbjct: 180 ILA 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630530|gb|ACU15623.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/183 (55%), Positives = 123/183 (67%), Gaps = 15/183 (8%)

Query: 3   VIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDK 62
            ++L  I     M D +KD+EECT QL GL+TCLPYVGG A+APTPDCCSGLKQVLKN+K
Sbjct: 12  FMLLTTIVVGIAMGDSSKDKEECTEQLAGLATCLPYVGGQAQAPTPDCCSGLKQVLKNNK 71

Query: 63  KCLCVIIRDRNDPEL-GLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQF 121
           KCLCVII+DRNDP+L GL INVTLAL LP+ C++P NVS+CP LLH+DP S EAQVFYQ 
Sbjct: 72  KCLCVIIKDRNDPDLGGLQINVTLALNLPTACNSPVNVSKCPELLHMDPKSAEAQVFYQL 131

Query: 122 GRNPSSPHTVITSTPTPSPTAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLE 181
            + PS   T     P PSP+             S S+N+ A     +D  C   R  GLE
Sbjct: 132 EKGPSKNGT----GPAPSPSVGA----------SPSSNQKANTPQKNDAFCKEKRLFGLE 177

Query: 182 IVS 184
           I++
Sbjct: 178 ILA 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542275|ref|XP_002512201.1| lipid binding protein, putative [Ricinus communis] gi|223548745|gb|EEF50235.1| lipid binding protein, putative [Ricinus communis]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 101/109 (92%)

Query: 15  MADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRND 74
           MAD  KD+EEC  QLVGL+TCLPYVGG+AK+PTPDCC+GLK+VLKN+KKCLCV+I+DRND
Sbjct: 6   MADADKDKEECAEQLVGLATCLPYVGGNAKSPTPDCCTGLKEVLKNNKKCLCVVIKDRND 65

Query: 75  PELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQFGR 123
           P+LGL INVTLALGLP+VCHA ANVSQCPALLHL PNSP+AQVFYQF +
Sbjct: 66  PDLGLKINVTLALGLPTVCHATANVSQCPALLHLAPNSPDAQVFYQFTK 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2050482	205	AT2G44290 [Arabidopsis thalian	0.954	0.917	0.497	1.2e-49
TAIR|locus:2050492	204	AT2G44300 [Arabidopsis thalian	0.939	0.906	0.517	5.2e-49
TAIR|locus:2035711	227	AT1G55260 [Arabidopsis thalian	0.756	0.656	0.450	2.8e-34
TAIR|locus:2076406	177	AT3G58550 [Arabidopsis thalian	0.614	0.683	0.435	1.8e-25
TAIR|locus:2077001	170	AT3G22600 [Arabidopsis thalian	0.492	0.570	0.359	2e-16
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.695	0.748	0.305	5.6e-13
TAIR|locus:2031551	193	AT1G73890 [Arabidopsis thalian	0.517	0.528	0.333	7.1e-13
TAIR|locus:505006466	156	AT4G14815 [Arabidopsis thalian	0.406	0.512	0.341	6.4e-12
TAIR|locus:2164411	182	XYP1 "xylogen protein 1" [Arab	0.502	0.543	0.339	8.2e-12
TAIR|locus:2010479	193	LTPG1 "AT1G27950" [Arabidopsis	0.593	0.606	0.304	1e-11

TAIR|locus:2050482 AT2G44290 [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 96/193 (49%), Positives = 134/193 (69%)

Query:     2 LVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKND 61
             L++V M++ ++G  ADK KD+EECT QLVG++TCLPYV G AK+PTPDCCSGLKQV+ +D
Sbjct:    15 LIMVAMVVDAAG--ADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINSD 72

Query:    62 KKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQF 121
              KCLC+II++RNDP+LGL +NV+LAL LPSVCHA A++++CPALLHLDPNSP+AQVFYQ 
Sbjct:    73 MKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPALLHLDPNSPDAQVFYQL 132

Query:   122 GRNXXXXXXXXXXXXXXXXXAAGGGGKNPISADSSSNNRGARVQGTSDGCCIGNRWSGLE 181
              +                   +      P S+  +++ R   V GT+       +W GLE
Sbjct:   133 AKGLNETVSASAPTGSASEPTSMSS--TPGSSAGNNSGRTTSVPGTNHAQSFSKQWLGLE 190

Query:   182 IVSGV-VLFHVYL 193
             +V+   V+F++++
Sbjct:   191 VVAHFFVIFYIFI 203

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2050492 AT2G44300 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 101/195 (51%), Positives = 132/195 (67%)

Query:     2 LVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKND 61
             L++V M+++++    DK KD+EECT QLVG++TCLPYV G AK+PTPDCCSGLKQVL ++
Sbjct:    15 LIVVAMVVAAAD---DKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGLKQVLNSN 71

Query:    62 KKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQVFYQF 121
             KKCLCVII+DRNDP+LGL INV+LAL LPSVCHA A+V++CPALLHLDPNSP+AQVFYQ 
Sbjct:    72 KKCLCVIIQDRNDPDLGLQINVSLALALPSVCHAAADVTKCPALLHLDPNSPDAQVFYQL 131

Query:   122 GRNXXXXXXXXXXXXXXXXXAAGGGGKNPISADSSSNNRG--ARVQGTSDGCCIGNRWSG 179
              +                  + G    +P S     NN G    V G +       +W G
Sbjct:   132 AKGLNKTGPASAPTGS----SPGPISISPTSGSDDGNNSGRTTSVPGRNHAQSFYKQWLG 187

Query:   180 LEIVSGV-VLFHVYL 193
             LE+V    V+F++++
Sbjct:   188 LEVVFHFFVIFYIFI 202

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2035711 AT1G55260 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 69/153 (45%), Positives = 97/153 (63%)

Query:     3 VIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDK 62
             +++  M+   G  +D A+DREECTNQL+ LSTC+PYVGGDAKAPT DCC+G  QV++  +
Sbjct:    55 IVITSMLLGFGN-SDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCCAGFGQVIRKSE 113

Query:    63 KCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPA-NVSQCPALLHLDPNSPEAQVFYQF 121
             KC+C+++RD++DP+LG+ IN TLA  LPS CH  A N++ C ++LHL  NS  A+ F   
Sbjct:   114 KCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDCISILHLPRNSTLAKEFENL 173

Query:   122 GRNXXXXXXXXXXXXXXXXXAAGGGGKNPISAD 154
             GR                    GGG   P+ ++
Sbjct:   174 GR--IEDNYNSTSPTQIHKDGTGGGKAEPVKSN 204

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2076406 AT3G58550 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 54/124 (43%), Positives = 81/124 (65%)

Query:     1 MLVI-VLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLK-QVL 58
             ML + + + +   G  ++ ++D + C + +  L +CLP+V   AKAP   CCS LK ++ 
Sbjct:    13 MLALCITVAVMFLGVRSELSQDIKGCQDAMSDLYSCLPFVTNKAKAPDSTCCSTLKVKID 72

Query:    59 KND-KKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCPALLHLDPNSPEAQV 117
             K   +KCLC +++DR+DP LG  ++   A+ LPS CH PAN+SQCP LLHL P+SP +Q+
Sbjct:    73 KGQTRKCLCTLVKDRDDPGLGFKVDANRAMSLPSACHVPANISQCPDLLHLLPDSPASQI 132

Query:   118 FYQF 121
             F QF
Sbjct:   133 FKQF 136

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2077001 AT3G22600 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 37/103 (35%), Positives = 59/103 (57%)

Query:     1 MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN 60
             + + V M + SS TM      +  CTN L+ +S CL Y+ G++ +P   CC+ L +V+++
Sbjct:     8 VFLTVFMAVMSS-TMVSA---QSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQS 63

Query:    61 DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPAN-VSQC 102
                CLC ++      +LG+N+N T ALGLP  C+     VS+C
Sbjct:    64 SPDCLCQVLNGGGS-QLGINVNQTQALGLPRACNVQTPPVSRC 105

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 44/144 (30%), Positives = 63/144 (43%)

Query:    18 KAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPEL 77
             KA+    C + L  LS CL Y+ G++  P+  CCS L  V+K+  +C+C  +     P +
Sbjct:    23 KAQPSSSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVIKSSPQCICSAVNSPI-PNI 81

Query:    78 GLNINVTLALGLPSVCHAPAN-VSQCPALLHLDPNSPEAQVFYQFGRNXXXXXXXXXXXX 136
             GLNIN T AL LP+ C+     ++QC A        P AQ                    
Sbjct:    82 GLNINRTQALQLPNACNIQTPPLTQCNAA-----TGPTAQPPAPSPTEKTPDVTLTPTSL 136

Query:   137 XXXXXAAGGGGKNPISADSSSNNR 160
                    GGG K   S  + S++R
Sbjct:   137 PGARSGVGGGSKTVPSVGTGSSSR 160

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2031551 AT1G73890 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/102 (33%), Positives = 55/102 (53%)

Query:     1 MLVIVLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN 60
             +L+ +L+ +S+       A+    C ++L+ L+ C P+V G A+ P   CC  L Q+   
Sbjct:     6 LLITLLISLSAFFLRMVLAQVPATCASRLLSLAPCGPFVQGFAQLPAQPCCDSLNQIYSQ 65

Query:    61 DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQC 102
             +  CLC+ + + +       IN TLAL LP +C+ PAN S C
Sbjct:    66 EATCLCLFLNNTSTLSPAFPINQTLALQLPPLCNIPANSSTC 107

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:505006466 AT4G14815 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query:    22 REECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNI 81
             +  CTN L+ ++ CL ++  +   P+  CC+ L  V++   +CLC ++ D    +LG+N+
Sbjct:    23 QSSCTNVLISMAPCLSFITQNTSLPSQQCCNQLAHVVRYSSECLCQVL-DGGGSQLGINV 81

Query:    82 NVTLALGLPSVCHAPAN-VSQC 102
             N T AL LP  CH      S+C
Sbjct:    82 NETQALALPKACHVETPPASRC 103

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2164411 XYP1 "xylogen protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 38/112 (33%), Positives = 60/112 (53%)

Query:     1 MLVIVLMMISSSGTM------ADKAKDREECTNQLVGLSTCLPYV--GGDAKAPTPDCCS 52
             + +IVL+ +SS   +      A       +C+  ++ ++ CL +V  GG    P   CCS
Sbjct:    13 LFLIVLLSLSSVSVLGASHHHATAPAPSVDCSTLILNMADCLSFVSSGGTVAKPEGTCCS 72

Query:    53 GLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVC--HAPANVSQC 102
             GLK VLK D +CLC   +  +   LG+ +N+T A  LP+ C  HAP+ ++ C
Sbjct:    73 GLKTVLKADSQCLCEAFK--SSASLGVTLNITKASTLPAACKLHAPS-IATC 121

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2010479 LTPG1 "AT1G27950" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 38/125 (30%), Positives = 60/125 (48%)

Query:     2 LVIVLMMISSSGTMADKAKD----REECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQV 57
             LV+V M I +S   A  A       +EC      ++ CL +  G A  P+  CC  ++ +
Sbjct:     8 LVLVTMTIVASIAAAAPAAPGGALADECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDI 67

Query:    58 LKNDKKCLCVIIRDRNDPELGLN---INVTLALGLPSVCHAP-ANVSQCPALLHLDPNSP 113
              + D KCLC +I+        L    +     + LP+ C    A+++ CP LL + P+SP
Sbjct:    68 KERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPSSP 127

Query:   114 EAQVF 118
             +A VF
Sbjct:   128 DAAVF 132

GO:0003674 "molecular_function" evidence=ND

GO:0006869 "lipid transport" evidence=IEA;IMP

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	5e-16
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	2e-13
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	2e-08
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	6e-08
cd04660	73	cd04660, nsLTP_like, nsLTP_like: Non-specific lipi	3e-04
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	5e-04

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 69.0 bits (169), Expect = 5e-16
 Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 32 LSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPS 91
          L+ CL Y+ G A AP  DCCSGLK V+K+D KCLC  +       LG   N T AL LP+
Sbjct: 1  LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLG-LKNATRALALPA 59

Query: 92 VCH 94
           C 
Sbjct: 60 ACG 62

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 5   VLMMISSSGTMADKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKC 64
           + ++++S+            C + L+              AP+P CC+ LK  +K D  C
Sbjct: 2   LAVLLASAAAAPPAPASAASCADSLLPC--LGYCYVNGTAAPSPACCAALKAAVKADVPC 59

Query: 65  LCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQC 102
           LC ++        G  IN+T A+ LP  C   +  S+C
Sbjct: 60  LCDLVTSP--LAAGFGINLTRAVALPKACGLTSPPSKC 95

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 25 CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVT 84
          C   L+ L+ C  Y+ G  + P+  CCS L+Q+     +C C  IR          IN  
Sbjct: 1  CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQL---QAQCRCTAIRAIVLG--IEGINPQ 55

Query: 85 LALGLPSVC 93
           A  LPS+C
Sbjct: 56 AAASLPSMC 64

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 25  CTNQLVGLSTCLPYVGGDA--KAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELG-LNI 81
           C   L+ L+ CL Y+ G +    P+  CCS L+ +  N  +C C+ +R      L    +
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGL--NSAQCRCLALRAAVLGILEIPGL 58

Query: 82  NVTLALGLPSVCHAPANVSQC 102
           N   A  LPS C  P   + C
Sbjct: 59  NAQNAASLPSACGVPPPYTDC 79

Length = 79

>gnl|CDD|240018 cd04660, nsLTP_like, nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 25  CTNQLVGLSTCLPYVGGDAKAPTP--DCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNIN 82
           C   L  L+ C PYV G    P P  +CC+ L++    D  CLC          +   I+
Sbjct: 1   CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLC----RYKTSLVLQIID 53

Query: 83  VTLALGLPSVCHAPANVSQC 102
              A+ LP+ C  P   S C
Sbjct: 54  PDKAVYLPAKCGLPLPPSSC 73

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes. Length = 73

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 32 LSTCLPYVGGDAKAPTPDCCSGLKQVL-----KNDKKCLCVIIRDRNDPELGLNINVTLA 86
          L+ CL Y+ G   AP+P CCSG+K +        D++  C  ++          +N   A
Sbjct: 10 LAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSA--AAGISGLNPGRA 67

Query: 87 LGLPSVCHAP 96
           GLP  C   
Sbjct: 68 AGLPGKCGVS 77

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.52
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.47
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.46
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.44
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.39
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.05
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.61
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	93.72
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	92.88

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.52  E-value=1.2e-15  Score=112.29  Aligned_cols=83  Identities=41%  Similarity=0.781  Sum_probs=49.4

Q ss_pred             ccccccCchhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCC
Q 029183           17 DKAKDREECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAP   96 (197)
Q Consensus        17 ~~aq~~~~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~   96 (197)
                      ..++...+|...+....+|+.|+.+. ..|+++||+++|++++.+..|||.++++..  ..+++||.+|++.||++||++
T Consensus        14 ~~~~~~~~c~~~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~--~~~~~in~~~a~~Lp~~Cg~~   90 (96)
T PF14368_consen   14 PAAACCCSCANSLLPCCPCLCYVTGG-PAPSAACCSALKSVVQADPPCLCQLLNSPG--APGFGINVTRALALPAACGVP   90 (96)
T ss_dssp             ----BTTB-HCCCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC--HCHHCCTCHHHHHHHHHCTSS
T ss_pred             cCCCCcchhHHHHhccccchhccCCC-CCCCHHHHHHHHHhccCCCCCHHHhcCccc--cccCCcCHHHHHHHHHHcCCC
Confidence            34445667866543333448998854 789999999999998889999999988532  135679999999999999999


Q ss_pred             CCCCCC
Q 029183           97 ANVSQC  102 (197)
Q Consensus        97 ~p~s~C  102 (197)
                      .+.++|
T Consensus        91 ~~~~~C   96 (96)
T PF14368_consen   91 VPPSKC   96 (96)
T ss_dssp             -S----
T ss_pred             CCCCCC
Confidence            865676

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.47  E-value=2.5e-14  Score=102.86  Aligned_cols=71  Identities=35%  Similarity=0.702  Sum_probs=57.5

Q ss_pred             hhhhccCccCChhhhcCCC--CCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCCCCCCC
Q 029183           25 CTNQLVGLSTCLPYVGGDA--KAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQC  102 (197)
Q Consensus        25 C~~~l~~L~pClpYvtg~~--~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~p~s~C  102 (197)
                      |+..+..|.+|++|+++++  ..|+..||+++|++   +..|+|.+++.   +.+. .||.++|+.||++||++++.++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~---~~~~-~i~~~~a~~Lp~~Cgv~~p~~~C   73 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTS---LVLQ-IIDPDKAVYLPAKCGLPLPPSSC   73 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCC---Cccc-ccCHHHHHHHHHHcCCCCCCCCC
Confidence            5566678899999999865  46999999999985   66799998763   2233 49999999999999999854776

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.46  E-value=3.7e-14  Score=104.93  Aligned_cols=71  Identities=32%  Similarity=0.694  Sum_probs=58.4

Q ss_pred             chhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcC-----CCcccceeecccCCCcCCCC-CCHHHHhhhcCcCCCCC
Q 029183           24 ECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN-----DKKCLCVIIRDRNDPELGLN-INVTLALGLPSVCHAPA   97 (197)
Q Consensus        24 ~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~-----~~~CLC~~Ik~~~~p~lg~~-IN~trA~~LP~aCgi~~   97 (197)
                      +|..++..|.||++|+++++..|+++||++++++++.     +..|+|..+++..   .++. ||.+||++||++||++.
T Consensus         2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~---~~~~~i~~~~a~~LP~~C~v~~   78 (89)
T cd01960           2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA---AGISGLNPGRAAGLPGKCGVSI   78 (89)
T ss_pred             CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccc---cccCCCCHHHHHhChHhcccCC
Confidence            6899999999999999988778999999999998765     3356666566532   2443 99999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.44  E-value=7.1e-14  Score=96.61  Aligned_cols=62  Identities=48%  Similarity=0.937  Sum_probs=52.9

Q ss_pred             ccCChhhhcCCCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCCCC-CHHHHhhhcCcCCC
Q 029183           32 LSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNI-NVTLALGLPSVCHA   95 (197)
Q Consensus        32 L~pClpYvtg~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~~I-N~trA~~LP~aCgi   95 (197)
                      |.||++|++++...|+++||++++++.+.++.|+|.++++....  ...+ |.++++.||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~--~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGAS--LLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCcccc--ccCcccHHHHHhchHhcCC
Confidence            57999999988778999999999999988999999999864321  2234 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.39  E-value=2.8e-13  Score=96.64  Aligned_cols=61  Identities=33%  Similarity=0.708  Sum_probs=53.6

Q ss_pred             cCccCChhhhcCCCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCCC
Q 029183           30 VGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPAN   98 (197)
Q Consensus        30 ~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~p   98 (197)
                      .+|.+|++|++++ ..|+.+||+.||+    +..|||.|+++   |.++..||.++|++||++||+++|
T Consensus         4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~----~~~CLC~y~~~---p~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGG-SPPSAACCAKLKE----QQSCLCQYAKN---PSLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCC-CCCCHHHHHHHhc----CCCCeeeeecC---ccHHhhcCcHHHHHHHHHcCCCCC
Confidence            4799999999975 6799999999999    55899999874   667667999999999999999975

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.05  E-value=1.7e-10  Score=80.21  Aligned_cols=73  Identities=33%  Similarity=0.788  Sum_probs=58.7

Q ss_pred             hhhhccCccCChhhhcCC--CCCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCC----CCCHHHHhhhcCcCCCCCC
Q 029183           25 CTNQLVGLSTCLPYVGGD--AKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGL----NINVTLALGLPSVCHAPAN   98 (197)
Q Consensus        25 C~~~l~~L~pClpYvtg~--~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~----~IN~trA~~LP~aCgi~~p   98 (197)
                      |...+..+.+|++|+++.  ...|+.+||++|+++.  +..|+|.+++....   ..    .++..+|..||+.||+..+
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~---~~~~~~~~~~~~a~~lp~~C~~~~~   75 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVL---GILEIPGVNAQNAASLPSACGVPPP   75 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccc---cccchhhhhHHHHHhhHHhcCCCCC
Confidence            566677778999999986  4678999999999986  78899999875422   22    2699999999999999876


Q ss_pred             CCCC
Q 029183           99 VSQC  102 (197)
Q Consensus        99 ~s~C  102 (197)
                      .+.|
T Consensus        76 ~~~C   79 (79)
T smart00499       76 YTDC   79 (79)
T ss_pred             CCCC
Confidence            4555

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.61  E-value=6.1e-10  Score=81.49  Aligned_cols=70  Identities=36%  Similarity=0.792  Sum_probs=55.1

Q ss_pred             cCccCChhhhcCCCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcC--------CCCCCHHHHhhhcCcCCCCCCCCC
Q 029183           30 VGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPEL--------GLNINVTLALGLPSVCHAPANVSQ  101 (197)
Q Consensus        30 ~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~l--------g~~IN~trA~~LP~aCgi~~p~s~  101 (197)
                      ..+.+|+.|++++...|+..||++|+++   ++.|.|..|+......+        ...++..+|..||+.||++.+.++
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~~~   89 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPYTD   89 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSSS-
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            3488999999987667999999999999   88999999885321100        025899999999999999986545


Q ss_pred             C
Q 029183          102 C  102 (197)
Q Consensus       102 C  102 (197)
                      |
T Consensus        90 C   90 (90)
T PF00234_consen   90 C   90 (90)
T ss_dssp             G
T ss_pred             C
Confidence            5

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=93.72  E-value=0.019  Score=43.01  Aligned_cols=76  Identities=30%  Similarity=0.632  Sum_probs=50.3

Q ss_pred             hhhhccCccCChhhhc----CCCCCCcHhHHHHHHhhhcCC-CcccceeecccCCCcCC-CCCCHHHHh-hhcCcCCCCC
Q 029183           25 CTNQLVGLSTCLPYVG----GDAKAPTPDCCSGLKQVLKND-KKCLCVIIRDRNDPELG-LNINVTLAL-GLPSVCHAPA   97 (197)
Q Consensus        25 C~~~l~~L~pClpYvt----g~~~~PSs~CCsaLk~v~~~~-~~CLC~~Ik~~~~p~lg-~~IN~trA~-~LP~aCgi~~   97 (197)
                      |-.....|.-|...+.    .-+..+..+||.-++.+.+.+ ..|||..+|..   -++ +.+|....+ .|-..||-..
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~---vlg~i~~~ipv~l~~lln~CGk~~   78 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKAN---VLGLINVNIPVALNLLLNACGKTV   78 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhh---cccccccccccHHHHHHHHhCCcC
Confidence            4333446777888772    112447888999999998776 57999998842   245 444444444 4678899876


Q ss_pred             C-CCCCC
Q 029183           98 N-VSQCP  103 (197)
Q Consensus        98 p-~s~C~  103 (197)
                      | .++|.
T Consensus        79 p~gf~C~   85 (85)
T PF14547_consen   79 PSGFTCP   85 (85)
T ss_pred             cCCCcCC
Confidence            4 56774

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=92.88  E-value=0.082  Score=39.76  Aligned_cols=75  Identities=27%  Similarity=0.554  Sum_probs=48.4

Q ss_pred             hhhhccCccCChhhhcC----CCCCCcHhHHHHHHhhhcCC-CcccceeecccCCCcCCCCCCHHHHhhh-cCcCCCCCC
Q 029183           25 CTNQLVGLSTCLPYVGG----DAKAPTPDCCSGLKQVLKND-KKCLCVIIRDRNDPELGLNINVTLALGL-PSVCHAPAN   98 (197)
Q Consensus        25 C~~~l~~L~pClpYvtg----~~~~PSs~CCsaLk~v~~~~-~~CLC~~Ik~~~~p~lg~~IN~trA~~L-P~aCgi~~p   98 (197)
                      |-.....|.-|..-+..    .+..|..+||.-++.+.+.+ ..|+|..||..   .+++.+|....+.+ -+.||-..|
T Consensus         4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan---~lgi~~~~pv~l~llln~CGk~~P   80 (85)
T cd01958           4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN---ILGISINIPVALSLLLNSCGRNVP   80 (85)
T ss_pred             CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc---ccCcccccChhHHHHHHHHcCcCC
Confidence            43333345566665532    12457789999999998886 57999999842   34665555555544 567998774


Q ss_pred             -CCCC
Q 029183           99 -VSQC  102 (197)
Q Consensus        99 -~s~C  102 (197)
                       .++|
T Consensus        81 ~gf~C   85 (85)
T cd01958          81 PGFTC   85 (85)
T ss_pred             CCCcC
Confidence             4455

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	3e-11
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	3e-06
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	3e-06
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	2e-05
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	6e-05
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	9e-05

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 25 CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVL-----KNDKKCLCVIIRDRNDPELGL 79
          C      ++ C+ Y  G    P+  CCSG++ +        D++  C  +++      G 
Sbjct: 4  CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSG- 62

Query: 80 NINVTLALGLPSVCHAPANV 99
           +N   A  +PS C      
Sbjct: 63 -LNAGNAASIPSKCGVSIPY 81

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 25 CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVL-----KNDKKCLCVIIRDRNDPELGL 79
          C      L+ C+ ++        P CC+G+K +L       D++ +C  ++       G 
Sbjct: 3  CGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG- 60

Query: 80 NINVTLALGLPSVCH 94
           IN   A  LP  C 
Sbjct: 61 -INPNNAEALPGKCG 74

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 25 CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVL-----KNDKKCLCVIIRDRNDPELGL 79
          C +    +  CL YV G    P+  CC G+K +      ++D++  C  ++         
Sbjct: 3  CGHVDSLVRPCLSYVQGGP-GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARG--IH 59

Query: 80 NINVTLALGLPSVCH 94
          N+N   A  +P  C 
Sbjct: 60 NLNEDNARSIPPKCG 74

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 25 CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVL-----KNDKKCLCVIIRDRNDPELGL 79
          C      L+ CL Y+      P   CC G+K ++       D++  C  +  ++      
Sbjct: 4  CGQVTSNLAPCLAYLRN--TGPLGRCCGGVKALVNSARTTEDRQIACTCL--KSAAGAIS 59

Query: 80 NINVTLALGLPSVCH 94
           IN+  A GLPS C 
Sbjct: 60 GINLGKAAGLPSTCG 74

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 25 CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVL-----KNDKKCLCVIIRDRNDPELGL 79
          C      L+ C+PYV G   A  P CC+G++ V        D++  C  +  +       
Sbjct: 4  CGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCL--KQLSASVP 60

Query: 80 NINVTLALGLPSVCH 94
           +N   A  LP  C 
Sbjct: 61 GVNPNNAAALPGKCG 75

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana} Length = 77

 Score = 38.5 bits (89), Expect = 9e-05
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 25 CTNQLVGLSTCLPYVGGDA-KAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELG-LNIN 82
          C      L+ C P V  +   +P+  CC+ L+     D  CLC     +N P LG   ++
Sbjct: 5  CGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLC---GYKNSPWLGSFGVD 58

Query: 83 VTLALGLPSVC 93
            LA  LP  C
Sbjct: 59 PELASALPKQC 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.56
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.56
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.55
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.54
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.53
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.52
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.49
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.44
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.43
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	93.75
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	90.45
1s6d_A	103	Albumin 8; all helix, folded LEAF, right-handed su	85.77
1sm7_A	109	Recombinant IB pronapin; all alpha-helix, right-ha	82.06

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.56  E-value=2.6e-16  Score=117.24  Aligned_cols=79  Identities=22%  Similarity=0.601  Sum_probs=64.6

Q ss_pred             CchhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhc-------CCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCC
Q 029183           23 EECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLK-------NDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHA   95 (197)
Q Consensus        23 ~~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~-------~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi   95 (197)
                      .+|++++..|.||++|+++++..|+.+||++||++++       .+..|+|.....   +.++ +||.++|+.||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~---~~~~-~in~~~A~~LP~~C~v   77 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAA---AGVS-GLNAGNAASIPSKCGV   77 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH---TTST-TCCHHHHHHHHHHHHC
T ss_pred             CChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccc---cccc-CcCHHHHHHHHHHcCC
Confidence            5799999999999999998877799999999999973       236899974321   2333 7999999999999999


Q ss_pred             CC-----CCCCCCCc
Q 029183           96 PA-----NVSQCPAL  105 (197)
Q Consensus        96 ~~-----p~s~C~~i  105 (197)
                      +.     +.+||+++
T Consensus        78 ~~p~~is~~~dC~~v   92 (93)
T 1afh_A           78 SIPYTISTSTDCSRV   92 (93)
T ss_dssp             CCSSCCSTTCCSSSC
T ss_pred             CCCCCCCCCCCCccC
Confidence            86     35699875

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.56  E-value=1.5e-16  Score=118.33  Aligned_cols=78  Identities=27%  Similarity=0.644  Sum_probs=64.4

Q ss_pred             CchhhhccCccCChhhhcCCCCCCcHhHHHHHHhhh-------cCCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCC
Q 029183           23 EECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVL-------KNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHA   95 (197)
Q Consensus        23 ~~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~-------~~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi   95 (197)
                      .+|+.++..|.||++|+++++ .|+++||++||+++       +.++.|+|.+..   .+.++ +||.++|+.||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~---~~~~~-~in~~~A~~LP~~Cgv   76 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQL---SASVP-GVNPNNAAALPGKCGV   76 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH---HHHST-TCCHHHHHHHHHHTTC
T ss_pred             CChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCc---ccccC-ccChHHHHHHHHHcCC
Confidence            479999999999999999865 58899999999987       445799998643   23444 8999999999999999


Q ss_pred             CCC-----CCCCCCc
Q 029183           96 PAN-----VSQCPAL  105 (197)
Q Consensus        96 ~~p-----~s~C~~i  105 (197)
                      +.|     .+||+++
T Consensus        77 ~~p~~is~~~dC~~v   91 (92)
T 2alg_A           77 SIPYKISASTNCATV   91 (92)
T ss_dssp             CCSSCSSTTSCGGGC
T ss_pred             CCCCCCCCCCCCccC
Confidence            873     4688875

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.55  E-value=1.8e-16  Score=118.59  Aligned_cols=80  Identities=28%  Similarity=0.640  Sum_probs=66.7

Q ss_pred             CchhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcC-----CCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCC
Q 029183           23 EECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN-----DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPA   97 (197)
Q Consensus        23 ~~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~-----~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~   97 (197)
                      .+|.+++..|+||++|++|+ ..|+++||++++++...     ++.|+|..+|+.+.  ...+||.++|+.||++||++.
T Consensus         2 isC~~v~~~L~pCl~Yv~g~-~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~--~~~~in~~~a~~LP~~CgV~~   78 (93)
T 2ljo_A            2 ISCGAVTSDLSPCLTYLTGG-PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAG--SITKLNTNNAAALPGKCGVNI   78 (93)
T ss_dssp             CSSHHHHHHHHHHHHHHTTS-SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGG--GCTTCCHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHhHHHHHcCC-CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhh--ccCCcCHHHHHhhhHhcCCCC
Confidence            57999999999999999986 46999999999999765     35688888887543  234799999999999999887


Q ss_pred             C-----CCCCCCc
Q 029183           98 N-----VSQCPAL  105 (197)
Q Consensus        98 p-----~s~C~~i  105 (197)
                      |     .+||+++
T Consensus        79 p~~Is~~~dC~~v   91 (93)
T 2ljo_A           79 PYKISTTTNCNTV   91 (93)
T ss_dssp             SSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCCC
Confidence            3     4689876

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.54  E-value=3.8e-16  Score=115.80  Aligned_cols=77  Identities=25%  Similarity=0.595  Sum_probs=62.3

Q ss_pred             chhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcC-------CCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCC
Q 029183           24 ECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN-------DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAP   96 (197)
Q Consensus        24 ~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~-------~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~   96 (197)
                      +|++++..|.||++|+++++. |+.+||++||++++.       +..|+|.  ++.. ..++ +||.++|+.||++||++
T Consensus         2 ~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClCl--k~~~-~~~~-~in~~~A~~LP~~C~v~   76 (90)
T 1bwo_A            2 DCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCL--KGIA-RGIH-NLNEDNARSIPPKCGVN   76 (90)
T ss_dssp             CHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHH--HHHH-TTCT-TCCHHHHHTHHHHHTCC
T ss_pred             CHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCc--cCch-hccC-CcCHHHHHHHHHHcCCC
Confidence            699999999999999998766 999999999998742       4689995  4432 2233 79999999999999998


Q ss_pred             CC-----CCCCCCc
Q 029183           97 AN-----VSQCPAL  105 (197)
Q Consensus        97 ~p-----~s~C~~i  105 (197)
                      .|     .+||+++
T Consensus        77 ~p~~is~~~dC~~v   90 (90)
T 1bwo_A           77 LPYTISLNIDCSRV   90 (90)
T ss_dssp             CSSCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCCCC
Confidence            63     4688764

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.53  E-value=6.9e-16  Score=114.51  Aligned_cols=77  Identities=23%  Similarity=0.600  Sum_probs=63.0

Q ss_pred             chhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcC-------CCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCC
Q 029183           24 ECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN-------DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAP   96 (197)
Q Consensus        24 ~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~-------~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~   96 (197)
                      +|++++..|.||++|+++++. |+.+||++||++++.       +..|+|.  ++.. ..++ +||.++|+.||++||++
T Consensus         2 ~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~-~~~~-~in~~~A~~LP~~Cgv~   76 (91)
T 1siy_A            2 TCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAA-GAVR-GINPNNAEALPGKCGVN   76 (91)
T ss_dssp             CTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHT-TCCS-SCCHHHHHHHHHHHTCC
T ss_pred             CHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcc-cccC-CcCHHHHHHHHHHcCCC
Confidence            699999999999999998765 999999999998753       4589997  5432 2233 79999999999999998


Q ss_pred             C-----CCCCCCCc
Q 029183           97 A-----NVSQCPAL  105 (197)
Q Consensus        97 ~-----p~s~C~~i  105 (197)
                      .     +.+||+++
T Consensus        77 ~p~~is~~~dC~~v   90 (91)
T 1siy_A           77 IPYKISTSTNCNSI   90 (91)
T ss_dssp             CSSCSCTTSCSSTT
T ss_pred             CCCCCCCCCCCccC
Confidence            6     35699875

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.52  E-value=6.8e-16  Score=114.71  Aligned_cols=77  Identities=26%  Similarity=0.640  Sum_probs=63.7

Q ss_pred             CchhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcC-------CCcccceeecccCCCcCCCCCCHHHHhhhcCcCCC
Q 029183           23 EECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN-------DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHA   95 (197)
Q Consensus        23 ~~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~-------~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi   95 (197)
                      .+|++++..|.||++|+++++. |+ +||++||++++.       +..|+|.  ++.. ..++ +||.++|+.||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClCl--k~~~-~~~~-~in~~~A~~LP~~C~v   75 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCL--KSAA-GAIS-GINLGKAAGLPSTCGV   75 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHH--HHHH-HHCT-TCCHHHHHHHHHHTTC
T ss_pred             CChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCc--cccc-cccC-CcChhHHHHHHHHcCC
Confidence            5799999999999999998777 88 999999999864       4799996  4331 2333 7999999999999999


Q ss_pred             CC-----CCCCCCCc
Q 029183           96 PA-----NVSQCPAL  105 (197)
Q Consensus        96 ~~-----p~s~C~~i  105 (197)
                      +.     +.+||+++
T Consensus        76 ~~p~~is~~~dC~~v   90 (91)
T 1t12_A           76 NIPYKISPSTDCSKV   90 (91)
T ss_dssp             CCSSCSSSSSCCTTC
T ss_pred             CCCCCCCCCCCCccC
Confidence            86     35799875

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.49  E-value=1.7e-15  Score=108.86  Aligned_cols=74  Identities=28%  Similarity=0.614  Sum_probs=60.8

Q ss_pred             cCchhhhccCccCChhhhcC-CCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcC-CCCCCHHHHhhhcCcCCCCCCC
Q 029183           22 REECTNQLVGLSTCLPYVGG-DAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPEL-GLNINVTLALGLPSVCHAPANV   99 (197)
Q Consensus        22 ~~~C~~~l~~L~pClpYvtg-~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~l-g~~IN~trA~~LP~aCgi~~p~   99 (197)
                      ..+|++++..|.||++|+++ ....|+.+||++||+.   ++.|||.++++   +.+ .++||.++|+.||++||++.|.
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~---~~~ClC~~~~~---~~~~~~gin~~~A~~LP~~Cgv~~p~   75 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNS---PWLGSFGVDPELASALPKQCGLANAP   75 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC---CHHHHHTTTTC---HHHHHHTBCHHHHHHHHHHTTCSCCC
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc---CcCCcCcccCC---cchhhcCcCHHHHHHHHHHcCCCCCC
Confidence            35799999999999999997 3467999999999983   77999998764   222 2469999999999999999753


Q ss_pred             CCC
Q 029183          100 SQC  102 (197)
Q Consensus       100 s~C  102 (197)
                       +|
T Consensus        76 -~C   77 (77)
T 2rkn_A           76 -TC   77 (77)
T ss_dssp             -CC
T ss_pred             -CC
Confidence             44

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.44  E-value=7.8e-15  Score=103.36  Aligned_cols=61  Identities=23%  Similarity=0.544  Sum_probs=53.0

Q ss_pred             cCccCChhhhcCCCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCCC
Q 029183           30 VGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPAN   98 (197)
Q Consensus        30 ~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~p   98 (197)
                      ..|.||++|++++ ..|+.+||++||+    +..|+|.|+++   +.++.+||.++|++||++||+++|
T Consensus         5 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~----~~~ClC~~~k~---~~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSG-AKPSGECCGNLRA----QQGCFCQYAKD---PTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTC-CCCCHHHHHHHHH----HSSHHHHGGGC---STTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCC-CCCCHHHHHhhCC----CCCCCCccccC---cccccccCHHHHHHHHHHcCCCCC
Confidence            3789999999986 5799999999998    47999999885   455556999999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.43  E-value=9.4e-15  Score=103.47  Aligned_cols=68  Identities=29%  Similarity=0.657  Sum_probs=56.4

Q ss_pred             chhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCCCCCCCC
Q 029183           24 ECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPANVSQCP  103 (197)
Q Consensus        24 ~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~p~s~C~  103 (197)
                      .|...  .|.||++|++++ ..|+.+||++||+    +..|+|.|+++   +.++.+||.++|++||++||++.|  .|.
T Consensus         2 ~C~~~--~L~pC~~~v~~~-~~Ps~~CC~~lk~----~~~ClC~~~k~---~~~~~~in~~~A~~Lp~~Cgv~~P--~C~   69 (69)
T 1l6h_A            2 GCNAG--QLTVCTGAIAGG-ARPTAACCSSLRA----QQGCFCQFAKD---PRYGRYVNSPNARKAVSSCGIALP--TCH   69 (69)
T ss_dssp             CSTTT--THHHHHHHHTTC-CSTTHHHHHHHHH----HHHHHHHHTTC---SSHHHHTTTTTGGGCCCCCSSCSC--CCC
T ss_pred             CCChh--hcccCHHHHcCC-CCCCHHHHHhhCC----CCCCCCccccC---cccccccCHHHHHHHHHHcCCCCC--CCC
Confidence            45443  789999999986 4699999999998    47999999885   455557999999999999999876  563

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=93.75  E-value=0.018  Score=41.86  Aligned_cols=67  Identities=30%  Similarity=0.672  Sum_probs=50.0

Q ss_pred             CccCChhhhcCCCCCCcHhHHHHHHhhhcCC-CcccceeecccCCCcCCCCCCHHHHhh-hcCcCCCCCC-CCCCCC
Q 029183           31 GLSTCLPYVGGDAKAPTPDCCSGLKQVLKND-KKCLCVIIRDRNDPELGLNINVTLALG-LPSVCHAPAN-VSQCPA  104 (197)
Q Consensus        31 ~L~pClpYvtg~~~~PSs~CCsaLk~v~~~~-~~CLC~~Ik~~~~p~lg~~IN~trA~~-LP~aCgi~~p-~s~C~~  104 (197)
                      +|..|..-+.+. ..|...||.-++.+.+.+ ..|+|..||     .+++ +|...++. |-+.||-..| .++|..
T Consensus        10 kLgvCanvL~g~-~~~~~~CC~Ll~GL~dleAAvCLCtaik-----~Lgi-lnlpv~L~llln~Cgk~~P~gF~C~~   79 (80)
T 1hyp_A           10 DLSICLNILGGS-LGTVDDCCALIGGLGDIEAIVCLCIQLR-----ALGI-LNLNRNLQLILNSCGRSYPSNATCPR   79 (80)
T ss_dssp             CCGGGGGGGGTC-CTTHHHHHHHHHTSCHHHHHHHHHHHHH-----HHTC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhHHHHHhCcC-CCCCCccchhhhCcchhhhhhhhhhhcc-----ccce-eecChhHHHHHHHhCCcCcCCCCCCC
Confidence            466788877543 336788999999997775 589999887     1466 67777776 4678999874 678864

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=90.45  E-value=0.0067  Score=54.94  Aligned_cols=53  Identities=21%  Similarity=0.552  Sum_probs=36.1

Q ss_pred             HhHHHHHHhhhcCCCcccceeecccCCCcC----C---C-CCCHHHHhhhcCcCCCCCCCCCCC
Q 029183           48 PDCCSGLKQVLKNDKKCLCVIIRDRNDPEL----G---L-NINVTLALGLPSVCHAPANVSQCP  103 (197)
Q Consensus        48 s~CCsaLk~v~~~~~~CLC~~Ik~~~~p~l----g---~-~IN~trA~~LP~aCgi~~p~s~C~  103 (197)
                      ..||+.|+++-+ ++.|.|..|+.......    +   . .+ ..+|..||..||+.. +..|.
T Consensus       429 ~~cc~~l~~~~~-~~~c~c~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~-~~~c~  489 (500)
T 3ob4_A          429 ERCCNELNEFEN-NQRCMCEALQQIMENQSDRLQGRQQEQQF-KRELRNLPQQCGLRA-PQRCD  489 (500)
T ss_dssp             HHHHHHHGGGTT-CHHHHHHHHHHHHHHHHTTCCSSHHHHHH-HHHHHTHHHHTTCCC-CSCCC
T ss_pred             HHHHHHHHhCCc-ccccccHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhCchhcCCCC-CccCC
Confidence            789999999821 18999998875321111    0   0 12 356999999999984 34787

>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3

Probab=85.77  E-value=0.18  Score=37.73  Aligned_cols=77  Identities=25%  Similarity=0.504  Sum_probs=51.8

Q ss_pred             cCchhhhc--cC-ccCChhhhcCC-----C-------CCCcHhHHHHHHhhhcCCCcccceeecccCCCcCC-C--CCCH
Q 029183           22 REECTNQL--VG-LSTCLPYVGGD-----A-------KAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELG-L--NINV   83 (197)
Q Consensus        22 ~~~C~~~l--~~-L~pClpYvtg~-----~-------~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg-~--~IN~   83 (197)
                      ...|...+  .. |.+|..||.-.     .       ...-..||.-|+.+   +..|.|..|+......+. -  .-..
T Consensus         8 ~q~C~qq~q~~q~L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~---~~~CrC~al~~~~Q~q~~g~q~~~~~   84 (103)
T 1s6d_A            8 ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVM   84 (103)
T ss_dssp             SSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHHH
T ss_pred             CcccHHHHHhChhHHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhc---CcccCcHHHHHHHHHHhcchhHHHHH
Confidence            34587765  24 88999999732     0       12357899999997   899999998754322221 1  1224


Q ss_pred             HHHhhhcCcCCCCCCCCCCC
Q 029183           84 TLALGLPSVCHAPANVSQCP  103 (197)
Q Consensus        84 trA~~LP~aCgi~~p~s~C~  103 (197)
                      .+|..||..||++.  ..|.
T Consensus        85 q~A~~LP~~C~i~p--~~C~  102 (103)
T 1s6d_A           85 SMAHNLPIECNLMS--QPCQ  102 (103)
T ss_dssp             HHHHHHHHHTTSSS--SCSC
T ss_pred             HHHHhcHHhcCCCc--ccCC
Confidence            56889999999963  2464

>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}

Probab=82.06  E-value=0.16  Score=37.95  Aligned_cols=75  Identities=24%  Similarity=0.643  Sum_probs=47.2

Q ss_pred             hhhhccC---ccCChhhhcC----CC--CCC---------cHhHHHHHHhhhcCCCcccceeecccCCC-----cCCC--
Q 029183           25 CTNQLVG---LSTCLPYVGG----DA--KAP---------TPDCCSGLKQVLKNDKKCLCVIIRDRNDP-----ELGL--   79 (197)
Q Consensus        25 C~~~l~~---L~pClpYvtg----~~--~~P---------Ss~CCsaLk~v~~~~~~CLC~~Ik~~~~p-----~lg~--   79 (197)
                      |...+..   |.+|..||.-    ..  ..|         -..||..|+.+   +..|.|..|+.....     .++-  
T Consensus         5 C~~q~q~~q~L~~C~~yv~qq~~~~~~~~~~~~~~~~~~~~qqCC~qL~~v---~~qCrC~al~~~v~~~~~qgq~~~~~   81 (109)
T 1sm7_A            5 CQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQ   81 (109)
T ss_dssp             HHTTHHHHCCCSSHHHHGGGGTTSSCCCSCSSSCTTCCTTHHHHHHHTTTT---CHHHHTTTTHHHHHTSSCSSCCCTTH
T ss_pred             hHHHHHcCccHHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHHHhc---CccCCCHHHHHHHHHHHHhcccchHH
Confidence            5554443   8899999972    11  111         36799999998   889999988653110     0110  


Q ss_pred             -CCCHHHHhhhcCcCCCCCCCCCCC
Q 029183           80 -NINVTLALGLPSVCHAPANVSQCP  103 (197)
Q Consensus        80 -~IN~trA~~LP~aCgi~~p~s~C~  103 (197)
                       .-...+|..||+.||+.. +..|.
T Consensus        82 ~~~~~~~a~~LP~~Cnl~~-~~~C~  105 (109)
T 1sm7_A           82 STRIYQIAKNLPNVCNMKQ-IGTCP  105 (109)
T ss_dssp             HHHHHHTTSSHHHHSCCCS-SCSSC
T ss_pred             HHHHHHHHHhCHHhcCCCC-CCCCC
Confidence             112345788999999974 34665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-12
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	5e-12
d1l6ha_	69	a.52.1.1 (A:) Non-specific lipid-transfer protein	0.003

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 58.3 bits (141), Expect = 2e-12
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 25  CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVL-----KNDKKCLCVIIRDRNDPELGL 79
           C      ++ C+ Y  G    P+  CCSG++ +        D++  C  +++        
Sbjct: 4   CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG--VS 61

Query: 80  NINVTLALGLPSVC--HAPANVS 100
            +N   A  +PS C    P  +S
Sbjct: 62  GLNAGNAASIPSKCGVSIPYTIS 84

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 57.1 bits (138), Expect = 5e-12
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 25 CTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVL-----KNDKKCLCVIIRDRNDPELGL 79
          C      +  CL YV G    P+ +CC+G++ +        D++ +C  ++         
Sbjct: 3  CGQVDSKMKPCLTYVQGGP-GPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARG--IH 59

Query: 80 NINVTLALGLPSVCH 94
          N+N+  A  +PS C+
Sbjct: 60 NLNLNNAASIPSKCN 74

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]} Length = 69

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 32 LSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPS 91
          L+ C   + G A+ PT  CCS L+      + C C   +   DP  G  +N   A    S
Sbjct: 8  LTVCTGAIAGGAR-PTAACCSSLRA----QQGCFCQFAK---DPRYGRYVNSPNARKAVS 59

Query: 92 VCHAP 96
           C   
Sbjct: 60 SCGIA 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.57
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.5
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.18
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.17
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	91.86
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	90.18
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	89.17
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	85.16

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.57  E-value=6.7e-17  Score=118.82  Aligned_cols=81  Identities=21%  Similarity=0.586  Sum_probs=67.0

Q ss_pred             CchhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcC-----CCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCC
Q 029183           23 EECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN-----DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPA   97 (197)
Q Consensus        23 ~~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~-----~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~   97 (197)
                      .+|.+++..|.||++||+|++..|++.||++++++.+.     ++.|+|..+++....  ..+||.+|+.+||++||++.
T Consensus         2 i~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~--~~~in~~ra~~LP~~C~v~l   79 (93)
T d1fk5a_           2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG--VSGLNAGNAASIPSKCGVSI   79 (93)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT--CTTCCHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccc--cCCcCHHHHHhhhHhcCCCC
Confidence            58999999999999999998888999999999998763     456888888864321  34799999999999999876


Q ss_pred             -----CCCCCCCc
Q 029183           98 -----NVSQCPAL  105 (197)
Q Consensus        98 -----p~s~C~~i  105 (197)
                           +.+||+++
T Consensus        80 ~~pis~~~dCs~i   92 (93)
T d1fk5a_          80 PYTISTSTDCSRV   92 (93)
T ss_dssp             SSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCcC
Confidence                 34688875

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.50  E-value=5.1e-16  Score=113.68  Aligned_cols=79  Identities=24%  Similarity=0.596  Sum_probs=64.9

Q ss_pred             chhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcC-----CCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCCC
Q 029183           24 ECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKN-----DKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPAN   98 (197)
Q Consensus        24 ~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~-----~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~p   98 (197)
                      +|.+++..|+||++|++|+ ..|++.||++++++.+.     ++.|+|..+++.+.  ....||.+||++||++||++.|
T Consensus         2 ~C~~v~~~l~pCl~Yl~g~-~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~--~~~~in~~ra~~LP~~C~v~~p   78 (91)
T d1mida_           2 NCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIAR--GIHNLNLNNAASIPSKCNVNVP   78 (91)
T ss_dssp             CHHHHHHHHGGGHHHHTTC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--TCTTCCHHHHHHHHHHTTCCCC
T ss_pred             CHHHHHHHHHhhHHHHcCC-CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcc--cCCCcCHHHHHhchHhcCCCCC
Confidence            6999999999999999986 46999999999999764     35688888886432  2346999999999999998863


Q ss_pred             -----CCCCCCc
Q 029183           99 -----VSQCPAL  105 (197)
Q Consensus        99 -----~s~C~~i  105 (197)
                           .+||+++
T Consensus        79 ~pis~~~dC~~i   90 (91)
T d1mida_          79 YTISPDIDCSRI   90 (91)
T ss_dssp             SCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCC
Confidence                 4588875

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.18  E-value=9.7e-13  Score=91.60  Aligned_cols=60  Identities=23%  Similarity=0.558  Sum_probs=55.1

Q ss_pred             CccCChhhhcCCCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCCC
Q 029183           31 GLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPAN   98 (197)
Q Consensus        31 ~L~pClpYvtg~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~p   98 (197)
                      +|.+|++.++++ ..||.+||+.||+    |..|||.|+||   |.+...||..+|.++-++||+++|
T Consensus         6 ~L~~C~~Ai~~g-~~PS~~CC~kLke----Q~~ClC~Y~kd---P~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           6 QLAVCASAILSG-AKPSGECCGNLRA----QQGCFCQYAKD---PTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             GGGGGHHHHHHC-CCCCHHHHHHHHH----HGGGHHHHTTC---TTTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             hccccHHHHhcC-CCCcHHHHHHHHh----cCCccceecCC---ccHHHHcCCHHHHHHHHhcCCCCC
Confidence            799999999986 5799999999999    88999999985   778778999999999999999986

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.17  E-value=8.2e-13  Score=92.45  Aligned_cols=65  Identities=29%  Similarity=0.634  Sum_probs=57.6

Q ss_pred             chhhhccCccCChhhhcCCCCCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCCCCCHHHHhhhcCcCCCCCC
Q 029183           24 ECTNQLVGLSTCLPYVGGDAKAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGLNINVTLALGLPSVCHAPAN   98 (197)
Q Consensus        24 ~C~~~l~~L~pClpYvtg~~~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~~IN~trA~~LP~aCgi~~p   98 (197)
                      .|+..  +|.||++.++++ ..||.+||+.||+    |..|||.|+||   |.+...||..+|.++-++||+++|
T Consensus         2 ~C~p~--~L~~C~~ai~~g-~~PS~~CC~kLke----Q~~ClC~Y~k~---P~~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAGG-ARPTAACCSSLRA----QQGCFCQFAKD---PRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTC-CSTTHHHHHHHHH----HHHHHHHHTTC---SSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hccccHHHHhCC-CCCcHHHHHHHHh----cCCccceeccC---ccHHHHcCCHHHHHHHHhcCCCCC
Confidence            46554  799999999986 4699999999999    88999999985   778778999999999999999986

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=90.18  E-value=0.038  Score=37.92  Aligned_cols=66  Identities=30%  Similarity=0.689  Sum_probs=45.7

Q ss_pred             ccCChhhhcCCCCCCcHhHHHHHHhhhcCC-CcccceeecccCCCcCCCCCCHHHHhh-hcCcCCCCC-CCCCCCC
Q 029183           32 LSTCLPYVGGDAKAPTPDCCSGLKQVLKND-KKCLCVIIRDRNDPELGLNINVTLALG-LPSVCHAPA-NVSQCPA  104 (197)
Q Consensus        32 L~pClpYvtg~~~~PSs~CCsaLk~v~~~~-~~CLC~~Ik~~~~p~lg~~IN~trA~~-LP~aCgi~~-p~s~C~~  104 (197)
                      |..|.+-+.+. ..+...||.-++.+.+.+ ..|+|..||-     .++ +|...++. |-..||-.. +.++|++
T Consensus         6 lg~C~nvLg~~-~~~~~~CC~Ll~GL~dleAAvCLCtaika-----~~l-lnvpv~l~llln~Cgk~~P~gF~CP~   74 (75)
T d1hypa_           6 LSICLNILGGS-LGTVDDCCALIGGLGDIEAIVCLCIQLRA-----LGI-LNLNRNLQLILNSCGRSYPSNATCPR   74 (75)
T ss_dssp             CGGGGGGGGTC-CTTHHHHHHHHHTSCHHHHHHHHHHHHHH-----HTC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             hhhHHHHhcCc-cCCCCCcchHHhhHHHHHHHHHHHHHHHH-----hhh-ccccchHHHHHHHcCCcCcCCCcCCC
Confidence            44566666553 235688999999998775 5799999983     123 55555544 466899887 4679975

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=89.17  E-value=0.04  Score=39.85  Aligned_cols=71  Identities=25%  Similarity=0.488  Sum_probs=49.0

Q ss_pred             Cchhhhc---cCccCChhhhcCC-----C-------CCCcHhHHHHHHhhhcCCCcccceeecccCCCcCCC---CCCHH
Q 029183           23 EECTNQL---VGLSTCLPYVGGD-----A-------KAPTPDCCSGLKQVLKNDKKCLCVIIRDRNDPELGL---NINVT   84 (197)
Q Consensus        23 ~~C~~~l---~~L~pClpYvtg~-----~-------~~PSs~CCsaLk~v~~~~~~CLC~~Ik~~~~p~lg~---~IN~t   84 (197)
                      ..|...+   ..|..|..||...     .       ..-=..||+.|+.+   ++.|.|..|+.........   .-=..
T Consensus         9 q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~---~~~CrC~~L~~avq~q~~q~~~~~~~q   85 (103)
T d1s6da_           9 SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMS   85 (103)
T ss_dssp             SSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHHHH
T ss_pred             ccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHhHHHHHHHHH
Confidence            4577554   3688999999631     1       11236799999998   9999999887654333321   11235


Q ss_pred             HHhhhcCcCCCC
Q 029183           85 LALGLPSVCHAP   96 (197)
Q Consensus        85 rA~~LP~aCgi~   96 (197)
                      .|..||..||+.
T Consensus        86 ~Ak~LPs~C~i~   97 (103)
T d1s6da_          86 MAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHTTSS
T ss_pred             HHHhChHhcCCC
Confidence            688999999996

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=85.16  E-value=0.057  Score=40.07  Aligned_cols=74  Identities=23%  Similarity=0.500  Sum_probs=49.0

Q ss_pred             ccCchhhhc--cCccCChhhhcCCC-----CCC-----c-----------HhHHHHHHhhhcCCCcccceeecccCCCcC
Q 029183           21 DREECTNQL--VGLSTCLPYVGGDA-----KAP-----T-----------PDCCSGLKQVLKNDKKCLCVIIRDRNDPEL   77 (197)
Q Consensus        21 ~~~~C~~~l--~~L~pClpYvtg~~-----~~P-----S-----------s~CCsaLk~v~~~~~~CLC~~Ik~~~~p~l   77 (197)
                      ....|...+  ..|..|..||.-.-     ..+     .           ..||..|+.+   ++.|.|..|+.......
T Consensus        14 ~~q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~---~~~CrC~~l~~~v~~~~   90 (125)
T d1psya_          14 SSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQI   90 (125)
T ss_dssp             SSSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhC---CcCCcCHHHHHHHHHHH
Confidence            445687643  36899999997321     011     0           4699999998   99999998875422111


Q ss_pred             ---CC-CCC----HHHHhhhcCcCCCCC
Q 029183           78 ---GL-NIN----VTLALGLPSVCHAPA   97 (197)
Q Consensus        78 ---g~-~IN----~trA~~LP~aCgi~~   97 (197)
                         ++ .-+    +.+|..||..||+..
T Consensus        91 qq~~~~~~~~~~~~q~Ak~LPs~C~i~~  118 (125)
T d1psya_          91 QQGQLHGEESERVAQRAGEIVSSCGVRC  118 (125)
T ss_dssp             HHTTCCTTCSHHHHHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHHHhChhhcCCcc
Confidence               11 111    467899999999975