Citrus Sinensis ID: 029269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQVRALLAYTIETQS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHccccHHHEEEcHHHHHHHHccccHHHHHHHHHcccEEEccccccccHHHHHHHHHHHccccccHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVSLKLQKRLSASVlkcgrgkvwldpnevneisMANSRQNIRKLVKdgfiirkptkihSRSRARRMKEAKrkgrhsgygkrkgtrearlpTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQVRALLAYTIETQS
Flexible Loop (DISEMBL)
mvslklqkrlsasvlkcgrgkvwldpnevneismansrqnirklvkdgfiirkptkihsrsrarrmkeakrkgrhsgygkrkgtrearlptkvlwmrRMRVLRRLLRKYreakkidrhmyhdMYMKVKGNVFKNKRVLMESIHkskaekarektlsdqfeakraknkasrerkiarreERLAQVRALLAYTIETQS
Low Complexity Region (SEG)
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKvlwmrrmrvlrrllrKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQVRALLAYTIETQS
Disordered region (IsUnstruct)
***********ASVLKCGRGKVWLDPNEVNEISMA**RQNIRKLVKDGFIIR************************************LPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLM********************************************VRALLAYT*****
Disordered Region (DISOPRED)
******QKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKI**************************************MRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKA*************************************************
Disordered Region (DISEMBL)
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTK*****************************EARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIH*******************************ARREERLAQVRALLAYTIETQS
Disordered Region (DISPRO)
**SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPT********************************RLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR********RKIARREERLAQVRALLAYT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQVRALLAYTIETQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q9LUQ6	209	60S ribosomal protein L19	yes	no	0.933	0.875	0.901	9e-93
Q9SRX2	214	60S ribosomal protein L19	no	no	0.933	0.855	0.918	7e-86
P49693	208	60S ribosomal protein L19	no	no	0.933	0.879	0.918	6e-85
P36241	203	60S ribosomal protein L19	yes	no	0.841	0.812	0.733	2e-68
P84100	196	60S ribosomal protein L19	yes	no	0.903	0.903	0.696	2e-59
Q5RB99	196	60S ribosomal protein L19	yes	no	0.903	0.903	0.696	2e-59
P84099	196	60S ribosomal protein L19	yes	no	0.903	0.903	0.696	2e-59
Q8HXN9	196	60S ribosomal protein L19	N/A	no	0.903	0.903	0.696	2e-59
P84098	196	60S ribosomal protein L19	yes	no	0.903	0.903	0.696	2e-59
D0VWQ5	196	60S ribosomal protein L19	yes	no	0.903	0.903	0.696	2e-59

>sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1

 Score =  339 bits (869), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 165/183 (90%), Positives = 174/183 (95%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRR L KYRE+KKIDRHMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1

 Score =  316 bits (809), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 168/183 (91%), Positives = 178/183 (97%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRAR+MK AK KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLL+KYRE KKID+HMY
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQ 183
           LA+
Sbjct: 181 LAK 183

Arabidopsis thaliana (taxid: 3702)

>sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3

 Score =  313 bits (801), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 168/183 (91%), Positives = 177/183 (96%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRAR++  AKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLL+KYRE KKIDRHMY
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQ 183
           LA+
Sbjct: 181 LAK 183

Arabidopsis thaliana (taxid: 3702)

>sp|P36241|RL19_DROME 60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2

 Score =  258 bits (658), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/165 (73%), Positives = 142/165 (86%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR
Sbjct: 1   MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
            R R+  EA+RKGRH G+GKRKGT  AR+PTK+LWM+R RVLRRLL+KYR++KKIDRH+Y
Sbjct: 61  YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
           HD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K
Sbjct: 121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165

Drosophila melanogaster (taxid: 7227)

>sp|P84100|RL19_RAT 60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P KV WMRRMR+LRRLLR+YRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Rattus norvegicus (taxid: 10116)

>sp|Q5RB99|RL19_PONAB 60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P KV WMRRMR+LRRLLR+YRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Pongo abelii (taxid: 9601)

>sp|P84099|RL19_MOUSE 60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P KV WMRRMR+LRRLLR+YRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Mus musculus (taxid: 10090)

>sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P KV WMRRMR+LRRLLR+YRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Macaca fascicularis (taxid: 9541)

>sp|P84098|RL19_HUMAN 60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P KV WMRRMR+LRRLLR+YRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Homo sapiens (taxid: 9606)

>sp|D0VWQ5|RL19_CANFA 60S ribosomal protein L19 OS=Canis familiaris GN=RPL19 PE=1 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P KV WMRRMR+LRRLLR+YRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
351726632	212	uncharacterized protein LOC100527275 [Gl	0.989	0.915	0.932	3e-99
297830288	209	60S ribosomal protein L19 [Arabidopsis l	0.933	0.875	0.912	1e-91
15228314	209	60S ribosomal protein L19-2 [Arabidopsis	0.933	0.875	0.901	4e-91
351721063	212	uncharacterized protein LOC100527501 [Gl	0.933	0.863	0.978	2e-90
351722819	212	uncharacterized protein LOC100499875 [Gl	0.933	0.863	0.978	3e-90
319428655	209	60S ribosomal protein [Phaseolus vulgari	0.933	0.875	0.972	3e-90
224120456	212	predicted protein [Populus trichocarpa]	0.933	0.863	0.978	4e-90
118483373	212	unknown [Populus trichocarpa]	0.933	0.863	0.978	5e-90
351726397	212	uncharacterized protein LOC100499883 [Gl	0.933	0.863	0.978	6e-90
449469060	209	PREDICTED: 60S ribosomal protein L19-2-l	0.933	0.875	0.972	7e-90

>gi|351726632|ref|NP_001237389.1| uncharacterized protein LOC100527275 [Glycine max] gi|255631934|gb|ACU16334.1| unknown [Glycine max]

 Score =  365 bits (938), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/194 (93%), Positives = 187/194 (96%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLLRKYRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQVRALLAYTIET 194
           LAQ     ++T  +
Sbjct: 181 LAQGPVDKSFTAPS 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830288|ref|XP_002883026.1| 60S ribosomal protein L19 [Arabidopsis lyrata subsp. lyrata] gi|297328866|gb|EFH59285.1| 60S ribosomal protein L19 [Arabidopsis lyrata subsp. lyrata]

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/183 (91%), Positives = 174/183 (95%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRR L KYRE+KKIDRHMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTLSDQFEAKR KNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLSDQFEAKRIKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228314|ref|NP_188300.1| 60S ribosomal protein L19-2 [Arabidopsis thaliana] gi|17865565|sp|Q9LUQ6.1|RL192_ARATH RecName: Full=60S ribosomal protein L19-2 gi|11994633|dbj|BAB02770.1| 60S ribosome protein L19-like [Arabidopsis thaliana] gi|15010618|gb|AAK73968.1| AT3g16780/MGL6_23 [Arabidopsis thaliana] gi|19699260|gb|AAL90996.1| AT3g16780/MGL6_23 [Arabidopsis thaliana] gi|332642343|gb|AEE75864.1| 60S ribosomal protein L19-2 [Arabidopsis thaliana]

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 165/183 (90%), Positives = 174/183 (95%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRR L KYRE+KKIDRHMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721063|ref|NP_001236941.1| uncharacterized protein LOC100527501 [Glycine max] gi|255632494|gb|ACU16597.1| unknown [Glycine max]

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/183 (97%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLLRKYRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722819|ref|NP_001237257.1| uncharacterized protein LOC100499875 [Glycine max] gi|255627313|gb|ACU14001.1| unknown [Glycine max]

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 179/183 (97%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLLRKYRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319428655|gb|ADV56679.1| 60S ribosomal protein [Phaseolus vulgaris] gi|319428672|gb|ADV56695.1| 60S ribosomal protein [Phaseolus vulgaris]

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 178/183 (97%), Positives = 182/183 (99%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNE NEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNESNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLLRKYRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120456|ref|XP_002318334.1| predicted protein [Populus trichocarpa] gi|222859007|gb|EEE96554.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (860), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 179/183 (97%), Positives = 182/183 (99%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLSASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483373|gb|ABK93587.1| unknown [Populus trichocarpa]

 Score =  335 bits (859), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 179/183 (97%), Positives = 182/183 (99%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLSASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726397|ref|NP_001237381.1| uncharacterized protein LOC100499883 [Glycine max] gi|255627381|gb|ACU14035.1| unknown [Glycine max]

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 179/183 (97%), Positives = 182/183 (99%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLLRKYREAKKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKNARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469060|ref|XP_004152239.1| PREDICTED: 60S ribosomal protein L19-2-like [Cucumis sativus] gi|449484247|ref|XP_004156829.1| PREDICTED: 60S ribosomal protein L19-2-like [Cucumis sativus]

 Score =  335 bits (858), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 178/183 (97%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTK+LWMRRMRVLRRLLRKYRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2089383	209	AT3G16780 [Arabidopsis thalian	0.933	0.875	0.836	3.4e-77
TAIR|locus:2024695	214	emb2386 "embryo defective 2386	0.933	0.855	0.841	5.5e-77
TAIR|locus:2137854	208	AT4G02230 [Arabidopsis thalian	0.933	0.879	0.841	3.1e-76
FB|FBgn0002607	203	RpL19 "Ribosomal protein L19"	0.908	0.876	0.642	4e-58
UNIPROTKB|Q3T0W9	196	RPL19 "60S ribosomal protein L	0.994	0.994	0.574	3.3e-56
UNIPROTKB|D0VWQ5	196	RPL19 "60S ribosomal protein L	0.994	0.994	0.574	3.3e-56
UNIPROTKB|P84098	196	RPL19 "60S ribosomal protein L	0.994	0.994	0.574	3.3e-56
MGI|MGI:98020	196	Rpl19 "ribosomal protein L19"	0.994	0.994	0.574	3.3e-56
RGD|621183	196	Rpl19 "ribosomal protein L19"	0.994	0.994	0.574	3.3e-56
UNIPROTKB|J3KTE4	194	RPL19 "Ribosomal protein L19"	0.979	0.989	0.578	5.3e-56

TAIR|locus:2089383 AT3G16780 [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 153/183 (83%), Positives = 161/183 (87%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct:     1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
             SRAR + EAKRKGRHSGYGKRKGTREARLPTK               KYRE+KKIDRHMY
Sbjct:    61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERK ARREER
Sbjct:   121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query:   181 LAQ 183
             LAQ
Sbjct:   181 LAQ 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2024695 emb2386 "embryo defective 2386" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 154/183 (84%), Positives = 163/183 (89%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct:     1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
             SRAR+MK AK KGRHSGYGKRKGTREARLPTK               KYRE KKID+HMY
Sbjct:    61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct:   121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query:   181 LAQ 183
             LA+
Sbjct:   181 LAK 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2137854 AT4G02230 [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 154/183 (84%), Positives = 162/183 (88%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct:     1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
             SRAR++  AKRKGRHSGYGKRKGTREARLPTK               KYRE KKIDRHMY
Sbjct:    61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query:   181 LAQ 183
             LA+
Sbjct:   181 LAK 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0002607 RpL19 "Ribosomal protein L19" [Drosophila melanogaster (taxid:7227)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 117/182 (64%), Positives = 139/182 (76%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR
Sbjct:     1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
              R R+  EA+RKGRH G+GKRKGT  AR+PTK               KYR++KKIDRH+Y
Sbjct:    61 YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             HD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K + +R+R    REER
Sbjct:   121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARKR----REER 176

Query:   181 LA 182
             +A
Sbjct:   177 IA 178

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|Q3T0W9 RPL19 "60S ribosomal protein L19" [Bos taurus (taxid:9913)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 112/195 (57%), Positives = 143/195 (73%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K               +YRE+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+R+  R + +
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180

Query:   181 LAQVRALLAYTIETQ 195
               ++   L+   ET+
Sbjct:   181 KEEIIKTLSKEEETK 195

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|D0VWQ5 RPL19 "60S ribosomal protein L19" [Canis lupus familiaris (taxid:9615)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 112/195 (57%), Positives = 143/195 (73%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K               +YRE+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+R+  R + +
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180

Query:   181 LAQVRALLAYTIETQ 195
               ++   L+   ET+
Sbjct:   181 KEEIIKTLSKEEETK 195

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P84098 RPL19 "60S ribosomal protein L19" [Homo sapiens (taxid:9606)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 112/195 (57%), Positives = 143/195 (73%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K               +YRE+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+R+  R + +
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180

Query:   181 LAQVRALLAYTIETQ 195
               ++   L+   ET+
Sbjct:   181 KEEIIKTLSKEEETK 195

GO:0003723 "RNA binding" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS;TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

MGI|MGI:98020 Rpl19 "ribosomal protein L19" [Mus musculus (taxid:10090)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 112/195 (57%), Positives = 143/195 (73%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K               +YRE+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+R+  R + +
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180

Query:   181 LAQVRALLAYTIETQ 195
               ++   L+   ET+
Sbjct:   181 KEEIIKTLSKEEETK 195

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IC

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621183 Rpl19 "ribosomal protein L19" [Rattus norvegicus (taxid:10116)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 112/195 (57%), Positives = 143/195 (73%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K               +YRE+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+R+  R + +
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180

Query:   181 LAQVRALLAYTIETQ 195
               ++   L+   ET+
Sbjct:   181 KEEIIKTLSKEEETK 195

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

UNIPROTKB|J3KTE4 RPL19 "Ribosomal protein L19" [Homo sapiens (taxid:9606)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 111/192 (57%), Positives = 142/192 (73%)

Query:     4 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63
             L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R 
Sbjct:     2 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 61

Query:    64 RRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMYHDM 123
             R+   A+RKGRH G GKRKGT  AR+P K               +YRE+KKIDRHMYH +
Sbjct:    62 RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 121

Query:   124 YMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQ 183
             Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+R+  R + +  +
Sbjct:   122 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 181

Query:   184 VRALLAYTIETQ 195
             +   L+   ET+
Sbjct:   182 IIKTLSKEEETK 193

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8HXN9	RL19_MACFA	No assigned EC number	0.6961	0.9030	0.9030	N/A	no
P05734	RL19A_SCHPO	No assigned EC number	0.6455	0.8061	0.8186	yes	no
P0CX83	RL19B_YEAST	No assigned EC number	0.6084	0.8469	0.8783	yes	no
P0CX82	RL19A_YEAST	No assigned EC number	0.6084	0.8469	0.8783	yes	no
O02639	RL19_CAEEL	No assigned EC number	0.6117	0.9387	0.9292	yes	no
P0DJ60	RL19_TETTS	No assigned EC number	0.6720	0.9234	0.9783	N/A	no
Q9SRX2	RL191_ARATH	No assigned EC number	0.9180	0.9336	0.8551	no	no
Q6P5L3	RL19_DANRE	No assigned EC number	0.6987	0.8469	0.8469	yes	no
P14329	RL19_DICDI	No assigned EC number	0.6534	0.8979	0.9462	yes	no
Q7ZYS1	RL19_XENLA	No assigned EC number	0.6961	0.9030	0.8984	N/A	no
P49693	RL193_ARATH	No assigned EC number	0.9180	0.9336	0.8798	no	no
D0VWQ5	RL19_CANFA	No assigned EC number	0.6961	0.9030	0.9030	yes	no
P36241	RL19_DROME	No assigned EC number	0.7333	0.8418	0.8128	yes	no
Q5RB99	RL19_PONAB	No assigned EC number	0.6961	0.9030	0.9030	yes	no
P84099	RL19_MOUSE	No assigned EC number	0.6961	0.9030	0.9030	yes	no
P84098	RL19_HUMAN	No assigned EC number	0.6961	0.9030	0.9030	yes	no
Q9LUQ6	RL192_ARATH	No assigned EC number	0.9016	0.9336	0.8755	yes	no
Q3T0W9	RL19_BOVIN	No assigned EC number	0.6961	0.9030	0.9030	yes	no
O42699	RL19B_SCHPO	No assigned EC number	0.6582	0.8061	0.8186	yes	no
Q90YU8	RL19_ICTPU	No assigned EC number	0.6969	0.8418	0.8418	N/A	no
P84100	RL19_RAT	No assigned EC number	0.6961	0.9030	0.9030	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.3__1844__AT3G16780.1	annotation not avaliable (209 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.7__2491__AT4G18100.1	annotation not avaliable (133 aa)	•			•	•	•	•		0.929
	fgenesh1_pg.C_scaffold_8000144	annotation not avaliable (133 aa)	•			•	•	•	•		0.927
	scaffold_603399.1	annotation not avaliable (194 aa)	•			•	•	•	•		0.905
	fgenesh2_kg.1__3446__AT1G33140.1	annotation not avaliable (194 aa)	•			•	•	•	•		0.901
	fgenesh2_kg.8__2660__AT5G67510.1	annotation not avaliable (146 aa)	•			•	•	•	•		0.897
	scaffold_502012.1	annotation not avaliable (146 aa)	•			•	•	•	•		0.883
	fgenesh2_kg.2__971__AT1G67430.1	annotation not avaliable (175 aa)	•			•	•	•			0.855
	scaffold_304047.1	annotation not avaliable (261 aa)	•			•		•	•		0.852
	fgenesh2_kg.1__2897__AT1G27400.1	annotation not avaliable (176 aa)	•			•	•	•			0.852
	fgenesh2_kg.8__1775__AT5G58420.1	annotation not avaliable (262 aa)	•			•		•	•		0.847

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
cd01417	164	cd01417, Ribosomal_L19e_E, Ribosomal protein L19e,	5e-82
PTZ00097	175	PTZ00097, PTZ00097, 60S ribosomal protein L19; Pro	7e-80
pfam01280	148	pfam01280, Ribosomal_L19e, Ribosomal protein L19e	4e-66
cd00481	145	cd00481, Ribosomal_L19e, Ribosomal protein L19e	1e-65
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	6e-57
COG2147	150	COG2147, RPL19A, Ribosomal protein L19E [Translati	5e-46
PRK08570	150	PRK08570, rpl19e, 50S ribosomal protein L19e; Revi	9e-39
cd01418	145	cd01418, Ribosomal_L19e_A, Ribosomal protein L19e,	2e-32

>gnl|CDD|238705 cd01417, Ribosomal_L19e_E, Ribosomal protein L19e, eukaryotic

 Score =  240 bits (614), Expect = 5e-82
 Identities = 128/164 (78%), Positives = 150/164 (91%)

Query: 4   LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63
           L+LQKRL+ASVLKCG+ KVWLDPNE++EIS ANSRQ+IRKL+KDG II+KP K+HSRSRA
Sbjct: 1   LRLQKRLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRA 60

Query: 64  RRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDM 123
           R+  EAKRKGRH GYGKRKGT  AR+P+KVLWMRR RVLRRLL+KYRE+KKID+H+YH++
Sbjct: 61  RKRHEAKRKGRHMGYGKRKGTANARMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHEL 120

Query: 124 YMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNK 167
           Y+K KGNVFKNKRVLME IHK+KAEKAREK L+DQ EA+RAKNK
Sbjct: 121 YLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEARRAKNK 164

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 164

>gnl|CDD|185443 PTZ00097, PTZ00097, 60S ribosomal protein L19; Provisional

 Score =  235 bits (601), Expect = 7e-80
 Identities = 126/174 (72%), Positives = 151/174 (86%)

Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
           +L+LQKRL+ASVLKCG+ +VWLDPNE +EIS+ANSR +IRKL+KDG IIRKP  +HSR+R
Sbjct: 1   NLRLQKRLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLIIRKPVAVHSRAR 60

Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHD 122
           ARR  EAKRKGRH+G GKR+GTREAR+PTKVLWMRR RVLRRLLRKYR AKKIDRHMYH+
Sbjct: 61  ARRFHEAKRKGRHTGIGKRRGTREARMPTKVLWMRRQRVLRRLLRKYRAAKKIDRHMYHE 120

Query: 123 MYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIAR 176
            Y+K KGN FKNKRVL+E+IHK+K EK +EK + DQ EA+RAK KA R ++ A+
Sbjct: 121 FYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEARRAKAKALRNKRKAK 174

Length = 175

>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e

 Score =  199 bits (508), Expect = 4e-66
 Identities = 93/148 (62%), Positives = 117/148 (79%)

Query: 2   VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRS 61
           + LKLQKRL+A VL CG+ +VW+DPNE+ EI+ A +R++IRKL+KDG II+KP K HSR 
Sbjct: 1   MDLKLQKRLAADVLGCGKNRVWIDPNELEEIADAITREDIRKLIKDGLIIKKPKKGHSRG 60

Query: 62  RARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYH 121
           RAR+ KE +RKGRH G G RKGT+ AR+P K LW+RR+R LRRLLR+ R+A KID+H Y 
Sbjct: 61  RARKRKEKRRKGRHRGPGSRKGTKGARMPKKELWIRRIRALRRLLRELRDAGKIDKHTYR 120

Query: 122 DMYMKVKGNVFKNKRVLMESIHKSKAEK 149
           ++Y K KG VFKNK  L E IHK+KAEK
Sbjct: 121 ELYRKAKGGVFKNKAHLKEYIHKAKAEK 148

Length = 148

>gnl|CDD|238268 cd00481, Ribosomal_L19e, Ribosomal protein L19e

 Score =  198 bits (505), Expect = 1e-65
 Identities = 93/145 (64%), Positives = 121/145 (83%)

Query: 4   LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63
           L+LQKRL+A +LKCG+ +VW+DPNE+ EI+ AN+R++IRKL+KDG II+KP K HSR RA
Sbjct: 1   LRLQKRLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIKKPKKGHSRGRA 60

Query: 64  RRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDM 123
           R+  EA+RKGRH G G RKGT+ AR+P+K LW+RR+R LRRLL+K R++ KID+H Y ++
Sbjct: 61  RKRHEARRKGRHRGPGSRKGTKGARMPSKELWIRRIRALRRLLKKLRDSGKIDKHTYREL 120

Query: 124 YMKVKGNVFKNKRVLMESIHKSKAE 148
           Y+K KGNVFKNKR L E IHK+KAE
Sbjct: 121 YLKAKGNVFKNKRHLKEYIHKAKAE 145

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 145

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score =  182 bits (463), Expect = 6e-57
 Identities = 118/179 (65%), Positives = 148/179 (82%), Gaps = 2/179 (1%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQ RL+A +L+CGR +VWLDPNE +EIS ANSR+++RKL+KDG IIRKP K+HSR
Sbjct: 1   MVSLKLQARLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIRKPVKVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SR R MKEAK  GRH G G+R+GTREAR+P+K LWMRR+R+LRRLLRKYRE KKIDRH+Y
Sbjct: 61  SRWRHMKEAKSMGRHEGAGRREGTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREE 179
            ++Y+K KGNVF+NKR LME IHK K EK +E+ L++Q  AKR K++  R +  AR++E
Sbjct: 121 RELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHK--ARKQE 177

Length = 357

>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]

 Score =  148 bits (376), Expect = 5e-46
 Identities = 73/149 (48%), Positives = 99/149 (66%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M +L+ QKRL+A +L  G  +VW+DPNE+ EI+ A +R++IR L+KDG I  KP K  SR
Sbjct: 1   MSNLRTQKRLAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
            RAR+    K+KGR  G G RKGT+ AR+P+K  W++R+R LRR LRK R+  KID+H Y
Sbjct: 61  GRARKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKHTY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEK 149
             +Y   KG  FK+K  L   I ++K  K
Sbjct: 121 RKLYRMAKGGAFKSKSHLKSYIEEAKLLK 149

Length = 150

>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed

 Score =  129 bits (328), Expect = 9e-39
 Identities = 62/138 (44%), Positives = 87/138 (63%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M+ L  QKRL+A +L  G  +VW+DP  + +++ A +R++IR+L+K+G I  KP K  SR
Sbjct: 1   MMDLSAQKRLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAKPKKGISR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
            RAR   E ++KGR  G G RKG + AR P K  W+ R+R LRR LR+ R+  KIDR  Y
Sbjct: 61  GRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKTY 120

Query: 121 HDMYMKVKGNVFKNKRVL 138
             +Y K KG  F++   L
Sbjct: 121 RKLYRKAKGGEFRSVSHL 138

Length = 150

>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal

 Score =  113 bits (285), Expect = 2e-32
 Identities = 55/132 (41%), Positives = 81/132 (61%)

Query: 4   LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63
           L  Q+RL+A +L  G  +VW+DP  + E++ A +R +IR L+K+G I  KP K  SR R 
Sbjct: 1   LSSQRRLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKAKPKKGISRGRL 60

Query: 64  RRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDM 123
           +   E ++KGR  G G RKG + AR P K  W++ +R LRR L++ R+  KID+  Y  +
Sbjct: 61  KERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKL 120

Query: 124 YMKVKGNVFKNK 135
           Y K KG  F++ 
Sbjct: 121 YRKAKGGSFRSL 132

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
KOG1696	193	consensus 60s ribosomal protein L19 [Translation,	100.0
PTZ00097	175	60S ribosomal protein L19; Provisional	100.0
cd01417	164	Ribosomal_L19e_E Ribosomal protein L19e, eukaryoti	100.0
PTZ00436	357	60S ribosomal protein L19-like protein; Provisiona	100.0
PF01280	148	Ribosomal_L19e: Ribosomal protein L19e; InterPro:	100.0
PRK08570	150	rpl19e 50S ribosomal protein L19e; Reviewed	100.0
cd00481	145	Ribosomal_L19e Ribosomal protein L19e. L19e is fou	100.0
cd01418	145	Ribosomal_L19e_A Ribosomal protein L19e, archaeal.	100.0
COG2147	150	RPL19A Ribosomal protein L19E [Translation, riboso	100.0

>KOG1696 consensus 60s ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-83  Score=535.65  Aligned_cols=193  Identities=72%  Similarity=1.083  Sum_probs=190.7

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++|||||||||+||+.+||+||||+++|++|||||+|++||+||+||.+|+++|||+||+++.+++++|||+|+|+
T Consensus         1 Ms~lrlqKRLAssVl~cGKkKvWlDpNE~~eI~~ansRq~irkLikdg~iI~Kp~~vhsr~r~rk~~~akrkgrH~G~GK   80 (193)
T KOG1696|consen    1 MSNLRLQKRLAASVLKCGKKKVWLDPNEISEISGANSRQNIRKLIKDGLIIRKPVTVHSRSRCRKRLEAKRKGRHMGYGK   80 (193)
T ss_pred             CchHHHHHHHHHHHHHhcccceeeCccHHHHhcccchHHHHHHHHhCCeEeecchhhhHHHHHHHHHHHHHhccccCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae  160 (196)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+.+||||||+.++|++++|+|+||||
T Consensus        81 RkGTanArmP~k~~Wmrr~RvlRrlL~kyR~skKIdkh~YH~lY~k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQae  160 (193)
T KOG1696|consen   81 RKGTANARMPSKVLWMRRMRVLRRLLKKYRDSKKIDKHMYHDLYLKVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQAE  160 (193)
T ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029269          161 AKRAKNKASRERKIARREERLAQVRALLAYTIE  193 (196)
Q Consensus       161 A~r~k~k~~r~rr~~~~~~k~~~~~~~~~~~~~  193 (196)
                      |+|.++++++++++|++++++++++.++..++|
T Consensus       161 Arr~k~k~ar~rreer~~~k~~~~~~~~~k~ee  193 (193)
T KOG1696|consen  161 ARRLKNKAARKRREERLAAKPQELIKTLSKEEE  193 (193)
T ss_pred             HHHhhhHHHhhhHHHHHhhchhhhhcccccccC
Confidence            999999999999999999999999999987754

>PTZ00097 60S ribosomal protein L19; Provisional

Probab=100.00  E-value=3.2e-79  Score=508.95  Aligned_cols=174  Identities=72%  Similarity=1.159  Sum_probs=171.2

Q ss_pred             cchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCcc
Q 029269            3 SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK   82 (196)
Q Consensus         3 ~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~GkRk   82 (196)
                      +|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+|||||+
T Consensus         1 ~l~~QKRLAA~vL~cG~~rVWiDP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~SR~R~r~~~~~k~kGR~~G~G~RK   80 (175)
T PTZ00097          1 NLRLQKRLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLIIRKPVAVHSRARARRFHEAKRKGRHTGIGKRR   80 (175)
T ss_pred             CchHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCCCc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHH
Q 029269           83 GTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAK  162 (196)
Q Consensus        83 Gt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQaeA~  162 (196)
                      ||+|||+|+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++||++.++|+++++.|+||+||+
T Consensus        81 Gtk~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~  160 (175)
T PTZ00097         81 GTREARMPTKVLWMRRQRVLRRLLRKYRAAKKIDRHMYHEFYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEAR  160 (175)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchHHHHHHHHHH
Q 029269          163 RAKNKASRERKIAR  176 (196)
Q Consensus       163 r~k~k~~r~rr~~~  176 (196)
                      +.+++++++++.++
T Consensus       161 r~k~~~~~~~r~~~  174 (175)
T PTZ00097        161 RAKAKALRNKRKAK  174 (175)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999987653

>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic

Probab=100.00  E-value=6.8e-78  Score=496.96  Aligned_cols=164  Identities=78%  Similarity=1.218  Sum_probs=162.0

Q ss_pred             chhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCccc
Q 029269            4 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (196)
Q Consensus         4 l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~GkRkG   83 (196)
                      |++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+|||||+|
T Consensus         1 l~~QKRLAA~vL~cG~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~SR~R~r~~~~~k~kGR~~G~G~RkG   80 (164)
T cd01417           1 LRLQKRLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRARKRHEAKRKGRHMGYGKRKG   80 (164)
T ss_pred             CcHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCcCCHHHHHHHHHHHHhCCCCCCCCCcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 029269           84 TREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR  163 (196)
Q Consensus        84 t~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQaeA~r  163 (196)
                      |+|||+|+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++||++.++|+++++.|+||+||++
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~r  160 (164)
T cd01417          81 TANARMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHELYLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEARR  160 (164)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchH
Q 029269          164 AKNK  167 (196)
Q Consensus       164 ~k~k  167 (196)
                      ++++
T Consensus       161 ~~~~  164 (164)
T cd01417         161 AKNK  164 (164)
T ss_pred             hccC
Confidence            8863

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>PTZ00436 60S ribosomal protein L19-like protein; Provisional

Probab=100.00  E-value=4.1e-76  Score=524.89  Aligned_cols=170  Identities=68%  Similarity=1.106  Sum_probs=167.9

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++||||||+||+||++|||||||+++||++||||+|||+||+||+|+++|++||||||+|++++++++|||+|+||
T Consensus         1 M~dLklQKRLAAsVL~cGk~RVWiDPnel~eIa~AiTReDIRkLIkdGlIikKp~KGhSRgRaRkr~eaKrKGRhrG~Gs   80 (357)
T PTZ00436          1 MVSLKLQARLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIRKPVKVHSRSRWRHMKEAKSMGRHEGAGR   80 (357)
T ss_pred             CcchHHHHHHHHHHhCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCcccCChHHHHHHHHHHHhCcCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae  160 (196)
                      |+||+|||||+|++||+|||+||++|++|||+|+||+|+||.||+++|||+|+|++||++|||+.++|+.+++.|.||++
T Consensus        81 RKGTk~AR~P~K~~WIrRIRaLRRlLKklRd~gKIDkh~YR~LYrKAKGn~FKNK~~L~e~I~k~KaE~~R~K~L~dQ~e  160 (357)
T PTZ00436         81 REGTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLA  160 (357)
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHH
Q 029269          161 AKRAKNKASR  170 (196)
Q Consensus       161 A~r~k~k~~r  170 (196)
                      |+|.++++.+
T Consensus       161 ArR~k~~~~r  170 (357)
T PTZ00436        161 AKRLKDEQHR  170 (357)
T ss_pred             HHHHHhhhhh
Confidence            9999987654

>PF01280 Ribosomal_L19e: Ribosomal protein L19e; InterPro: IPR000196 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.1e-73  Score=465.97  Aligned_cols=148  Identities=68%  Similarity=1.097  Sum_probs=130.9

Q ss_pred             CcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 029269            2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR   81 (196)
Q Consensus         2 ~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~GkR   81 (196)
                      |||++||||||+||+||++|||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|||+|
T Consensus         1 m~l~~QKRLAa~vL~~G~~rVw~DP~~~~eI~~A~tR~~IR~LIk~G~I~~k~~k~~Sr~R~r~~~~~r~kGr~~G~G~R   80 (148)
T PF01280_consen    1 MDLKLQKRLAASVLGCGKNRVWIDPNELEEIANAITREDIRKLIKDGLIIKKPVKGHSRGRARKRKEARRKGRHRGPGKR   80 (148)
T ss_dssp             -STHHHHHHHHHHHTS-GGGEEE-STTHHHHHH--SHHHHHHHHHTTSEEE---S--STHHHHHHHHHHHCTTS-SSTTS
T ss_pred             CccHHHHHHHHHHHCCCCCcEEeCHHHHHHHHhhhhHHHHHHHHHCCCeEeCCCCCCchHHHHHHHHHHhhccccccccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHH
Q 029269           82 KGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK  149 (196)
Q Consensus        82 kGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~  149 (196)
                      +||+|||+|+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||+.++|+
T Consensus        81 kGt~~AR~~~K~~W~~riR~lRr~Lk~~r~~~kID~~~Yr~lY~kaKGn~Fkn~~~L~~~i~~~k~e~  148 (148)
T PF01280_consen   81 KGTKNARMPEKELWMRRIRALRRLLKRLRDSGKIDRHMYRSLYRKAKGNVFKNKRHLMEHIHKLKAEK  148 (148)
T ss_dssp             -S-HHHHS-HHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHCH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCcccCHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents structural domain of the ribosomal protein L19 from eukaryotes, as well as L19e from archaea []. L19/L19e is absent in bacteria. L19/L19e is part of the large ribosomal subunit, whose structure has been determined in a number of eukaryotic and archaeal species []. L19/L19e is a multi-helical protein consisting of two different 3-helical domains connected by a long, partly helical linker.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_T 3O58_S 3O5H_S 3IZS_T 2WWA_J 1S1I_P 2WW9_J 2ZKR_7 4A1A_O 4A1C_O ....

>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed

Probab=100.00  E-value=1.2e-72  Score=460.35  Aligned_cols=147  Identities=43%  Similarity=0.742  Sum_probs=145.4

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+||||
T Consensus         1 M~~l~~qkRLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~   80 (150)
T PRK08570          1 MMDLSAQKRLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAKPKKGISRGRARERHEKRKKGRRRGPGS   80 (150)
T ss_pred             CcchHHHHHHHHHHHCCCccceeeCHHHHHHHHHHhhHHHHHHHHHCCCeeecCccCCChHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhh
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKA  147 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~  147 (196)
                      |+||+|||+|+|+.||.+||+||++|++|||+|+||+|+||.||++||||+|+|++||++||+....
T Consensus        81 RkGt~~AR~p~K~~W~~riR~lRr~Lk~lR~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~i~~~~~  147 (150)
T PRK08570         81 RKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKTYRKLYRKAKGGEFRSVSHLKTYIEEHGL  147 (150)
T ss_pred             CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999998764

>cd00481 Ribosomal_L19e Ribosomal protein L19e

Probab=100.00  E-value=1.8e-72  Score=457.27  Aligned_cols=145  Identities=64%  Similarity=1.101  Sum_probs=142.9

Q ss_pred             chhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCccc
Q 029269            4 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (196)
Q Consensus         4 l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~GkRkG   83 (196)
                      |++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+|||||+|
T Consensus         1 l~~QkRLAA~vL~~G~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~RkG   80 (145)
T cd00481           1 LRLQKRLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIKKPKKGHSRGRARKRHEARRKGRHRGPGSRKG   80 (145)
T ss_pred             CcHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCcCCCCCCccC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhH
Q 029269           84 TREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAE  148 (196)
Q Consensus        84 t~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e  148 (196)
                      |++||+|+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++||++.++|
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKG~~Fknk~~L~~~i~~~~~~  145 (145)
T cd00481          81 TKGARMPSKELWIRRIRALRRLLKKLRDSGKIDKHTYRELYLKAKGNVFKNKRHLKEYIHKAKAE  145 (145)
T ss_pred             ccccCCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999998764

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal

Probab=100.00  E-value=8.1e-71  Score=447.48  Aligned_cols=142  Identities=39%  Similarity=0.722  Sum_probs=140.5

Q ss_pred             chhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCccc
Q 029269            4 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (196)
Q Consensus         4 l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~GkRkG   83 (196)
                      |++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+|||||+|
T Consensus         1 l~~QkRLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~RkG   80 (145)
T cd01418           1 LSSQRRLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKG   80 (145)
T ss_pred             CcHHHHHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCCHHHHHHHHHHHHhCcCCCCCCCCC
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHh
Q 029269           84 TREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKS  145 (196)
Q Consensus        84 t~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~  145 (196)
                      |+|||+|+|+.||.+||+||++|++|||+|+||+|+||.||++||||+|+|++||++||..+
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~I~~~  142 (145)
T cd01418          81 KKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKLYRKAKGGSFRSLSHLKSYLKQH  142 (145)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999876

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.6e-68  Score=432.68  Aligned_cols=149  Identities=49%  Similarity=0.808  Sum_probs=146.7

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |+||++|+||||+||+||++|||||||++++|++|+||+|||.||+||+|+++|++|+|+||+++++++++||||+||||
T Consensus         1 M~nl~~qkRLAA~il~vG~~Rvwidp~~~eei~~A~TR~dIr~LIk~g~I~~k~~kg~SrgR~rkr~~qkkkgr~rG~Gs   80 (150)
T COG2147           1 MSNLRTQKRLAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISRGRARKRHAQKKKGRRRGPGS   80 (150)
T ss_pred             CchHHHHHHHHHHHHccCcceeeeChHHHHHHHHhhhHHHHHHHHHCCCeeeccccccchHHHHHHHHHHhcccCCCCCc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHH
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK  149 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~  149 (196)
                      |+||++||||+|+.||.+||+||++|++|||+|+||+|+||.||+++|||.|++++||.+||.+++.++
T Consensus        81 RKG~k~AR~p~K~~Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~~~~k  149 (150)
T COG2147          81 RKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEAKLLK  149 (150)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
3izr_T	209	Localization Of The Large Subunit Ribosomal Protein		1e-84
2zkr_p	196	Structure Of A Mammalian Ribosomal 60s Subunit With		6e-58
4a1a_O	185	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-54
3zf7_T	260	High-resolution Cryo-electron Microscopy Structure		6e-54
4a17_O	185	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-48
2ww9_J	189	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		4e-47
1s1i_P	142	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		8e-41
3jyw_P	176	Structure Of The 60s Proteins For Eukaryotic Riboso		9e-41
3j21_Q	150	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-25
3ow2_O	143	Crystal Structure Of Enhanced Macrolide Bound To 50		8e-15
1ffk_M	148	Crystal Structure Of The Large Ribosomal Subunit Fr		8e-15
1s72_P	149	Refined Crystal Structure Of The Haloarcula Marismo		9e-15
3g4s_P	143	Co-Crystal Structure Of Tiamulin Bound To The Large		5e-14

>pdb|3IZR|T Chain T, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 209

Iteration: 1
 Score =  308 bits (790), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 155/182 (85%), Positives = 164/182 (90%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL++SVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKP KIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
           SRARR  EAK+KGRHSGYGKR+GTREARLPTK               KYREAKKID+HMY
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMY+KVKGN+FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK+KASRERKIARREER
Sbjct: 121 HDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARREER 180
Query: 181 LA 182
           LA
Sbjct: 181 LA 182

>pdb|2ZKR|PP Chain p, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 196

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/181 (62%), Positives = 137/181 (75%), Gaps = 4/181 (2%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K               +YRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176
Query: 181 L 181
           L
Sbjct: 177 L 177

>pdb|4A1A|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 3. Length = 185

Iteration: 1
 Score =  207 bits (528), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 139/186 (74%), Gaps = 5/186 (2%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSL+LQKRL+ASVLKCG+ ++WLDPNE +EISMANSR +IRKL+KDG ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
           SRAR   EAKRKGRH+G GKRKGTR AR+PTK               KYR AKKID+H Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H+ Y+  KGN++KNK VL+E+IH SKA+K +   L+ Q EA+RAKN ASR    A+R E+
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASR----AKRNEK 176
Query: 181 LAQVRA 186
            AQ+ A
Sbjct: 177 -AQIVA 181

>pdb|3ZF7|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 260

Iteration: 1
 Score =  206 bits (524), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQ RL+A +L+CGRG+VWLDPNE  EI  ANSR+++RKL+KDG ++RKP K+HSR
Sbjct: 1   MVSLKLQARLAADILRCGRGRVWLDPNEAVEIRNANSRKSVRKLIKDGLVMRKPVKVHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
           SR R+MK AK  GRH G G+R+GTREAR+P+K               KYRE KKIDRH+Y
Sbjct: 61  SRWRQMKLAKSMGRHEGTGRREGTREARMPSKDLWMRRLRILRRLLRKYREEKKIDRHIY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREE 179
            ++YMK KGNVF+NKR LME IHK K EK + + L++Q  AKR K++ +R +  AR++E
Sbjct: 121 RELYMKAKGNVFRNKRNLMEHIHKVKNEKKKARQLAEQLAAKRLKDEQNRRK--ARKQE 177

>pdb|4A17|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2 Length = 185

Iteration: 1
 Score =  186 bits (471), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 114/147 (77%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSL+LQKRL+ASVLKCG+ ++WLDPNE +EISMANSR +IRKL+KDG ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
           SRAR   EAKRKGRH+G GKRKGTR AR+PTK               KYR AKKID+H Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKA 147
           H+ Y+  KGN++KNK VL+E+IH SKA
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKA 147

>pdb|2WW9|J Chain J, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 189

Iteration: 1
 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 121/166 (72%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+
Sbjct: 1   MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSK 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
           SR R   ++KR+GRHSGYGKRKGTREARLP++               KYR+A KID+H+Y
Sbjct: 61  SRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
           H +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN
Sbjct: 121 HVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166

>pdb|1S1I|P Chain P, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 142

Iteration: 1
 Score =  162 bits (411), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 102/140 (72%)
Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
           +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61
Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMYHD 122
            R   ++KR+GRHSGYGKRKGTREARLP++               KYR+A KID+H+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121
Query: 123 MYMKVKGNVFKNKRVLMESI 142
           +Y + KGN FK+KR L+E I
Sbjct: 122 LYKESKGNAFKHKRALVEHI 141

>pdb|3JYW|P Chain P, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 176

Iteration: 1
 Score =  162 bits (411), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 102/140 (72%)
Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
           +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61
Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMYHD 122
            R   ++KR+GRHSGYGKRKGTREARLP++               KYR+A KID+H+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121
Query: 123 MYMKVKGNVFKNKRVLMESI 142
           +Y + KGN FK+KR L+E I
Sbjct: 122 LYKESKGNAFKHKRALVEHI 141

>pdb|3J21|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 150

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 86/138 (62%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M +LK+Q+R++A +LKCG  ++W+DP  +++++ A +R++I++L+K+G I +KP K  SR
Sbjct: 1   MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
            RA+   E K+KGRH G G RKG + AR+  K               K +  KKIDR  Y
Sbjct: 61  YRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTY 120
Query: 121 HDMYMKVKGNVFKNKRVL 138
             +Y++ KG  FKNK  L
Sbjct: 121 RMLYIRAKGGQFKNKHQL 138

>pdb|3OW2|O Chain O, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 143

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 65/131 (49%)
Query: 2   VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRS 61
             L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMYH 121
           RAR  ++ + KG   G G RKG   AR  +K               + R+   +    Y 
Sbjct: 61  RARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVF 132
           D+Y K  G  F
Sbjct: 121 DLYDKAGGGEF 131

>pdb|1FFK|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 148

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 65/131 (49%)
Query: 2   VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRS 61
             L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMYH 121
           RAR  ++ + KG   G G RKG   AR  +K               + R+   +    Y 
Sbjct: 61  RARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVF 132
           D+Y K  G  F
Sbjct: 121 DLYDKAGGGEF 131

>pdb|1S72|P Chain P, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 149

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 65/132 (49%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR
Sbjct: 1   MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMY 120
            RAR  ++ +  G   G G RKG   AR  +K               + R+   +    Y
Sbjct: 61  GRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQY 120
Query: 121 HDMYMKVKGNVF 132
            D+Y K  G  F
Sbjct: 121 RDLYDKAGGGEF 132

>pdb|3G4S|P Chain P, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 143

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 65/133 (48%)
Query: 2   VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRS 61
             L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYREAKKIDRHMYH 121
           RAR  ++ +  G   G G RKG   AR  +K               + R+   +    Y 
Sbjct: 61  RARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVFKN 134
           D+Y K  G  F +
Sbjct: 121 DLYDKAGGGEFDS 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
4a17_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	3e-60
3iz5_T	209	60S ribosomal protein L19 (L19E); eukaryotic ribos	3e-56
3jyw_P	176	60S ribosomal protein L19; eukaryotic ribosome, RA	2e-54
4a1a_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	1e-53
1vq8_P	149	50S ribosomal protein L19E; ribosome 50S, protein-	1e-52
3u5e_R	189	60S ribosomal protein L19-A; translation, ribosome	2e-51
2zkr_p	196	60S ribosomal protein L19; protein-RNA complex, 60	9e-51
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} Length = 185

 Score =  185 bits (470), Expect = 3e-60
 Identities = 107/147 (72%), Positives = 128/147 (87%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSL+LQKRL+ASVLKCG+ ++WLDPNE +EISMANSR +IRKL+KDG ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRAR   EAKRKGRH+G GKRKGTR AR+PTKVLWMRR RVLRRLLRKYR AKKID+H Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKA 147
           H+ Y+  KGN++KNK VL+E+IH SKA
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKA 147

>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 176

 Score =  170 bits (431), Expect = 2e-54
 Identities = 95/174 (54%), Positives = 125/174 (71%)

Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
           +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61

Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHD 122
            R   ++KR+GRHSGYGKRKGTREARLP++V+W+RR+RVLRRLL KYR+A KID+H+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121

Query: 123 MYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIAR 176
           +Y + KGN FK+KR L+E I  + A  A     +    A  A   A+     A 
Sbjct: 122 LYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 175

>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O Length = 185

 Score =  168 bits (426), Expect = 1e-53
 Identities = 119/180 (66%), Positives = 148/180 (82%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSL+LQKRL+ASVLKCG+ ++WLDPNE +EISMANSR +IRKL+KDG ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SRAR   EAKRKGRH+G GKRKGTR AR+PTKVLWMRR RVLRRLLRKYR AKKID+H Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H+ Y+  KGN++KNK VL+E+IH SKA+K +   L+ Q EA+RAKN ASR ++  + +  
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASRAKRNEKAQIV 180

>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ... Length = 149

 Score =  164 bits (417), Expect = 1e-52
 Identities = 52/148 (35%), Positives = 77/148 (52%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR
Sbjct: 1   MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
            RAR  ++ +  G   G G RKG   AR  +K  W  R+R  R  LR+ R+   +    Y
Sbjct: 61  GRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAE 148
            D+Y K  G  F +   L   I  +  +
Sbjct: 121 RDLYDKAGGGEFDSVADLERYIDANHGD 148

>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P Length = 189

 Score =  163 bits (413), Expect = 2e-51
 Identities = 107/189 (56%), Positives = 147/189 (77%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+
Sbjct: 1   MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSK 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           SR R   ++KR+GRHSGYGKRKGTREARLP++V+W+RR+RVLRRLL KYR+A KID+H+Y
Sbjct: 61  SRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN+A+R+R+  R  E+
Sbjct: 121 HVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEK 180

Query: 181 LAQVRALLA 189
              +    A
Sbjct: 181 RDALLKEDA 189

>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 196

 Score =  161 bits (409), Expect = 9e-51
 Identities = 125/195 (64%), Positives = 157/195 (80%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P KV WMRRMR+LRRLLR+YRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+R+  R + +
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180

Query: 181 LAQVRALLAYTIETQ 195
             ++   L+   ET+
Sbjct: 181 KEEIIKTLSKEEETK 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 31/196 (15%), Positives = 56/196 (28%), Gaps = 68/196 (34%)

Query: 10  LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTK----IHSRSRARR 65
           +   +L      +W D  + + + + N      KL K   + ++P +    I S     +
Sbjct: 387 IPTILL----SLIWFDVIKSDVMVVVN------KLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 66  MKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRH------- 118
           +K       H                           R ++  Y   K  D         
Sbjct: 437 VKLENEYALH---------------------------RSIVDHYNIPKTFDSDDLIPPYL 469

Query: 119 --------MYH----DMYMKVKG--NVFKNKRVLMESI-HKSKAEKAREKTLSD--QFEA 161
                    +H    +   ++     VF + R L + I H S A  A    L+   Q + 
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 162 KR---AKNKASRERKI 174
            +     N    ER +
Sbjct: 530 YKPYICDNDPKYERLV 545

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3u5e_R	189	60S ribosomal protein L19-A; translation, ribosome	100.0
4a1a_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	100.0
2zkr_p	196	60S ribosomal protein L19; protein-RNA complex, 60	100.0
3iz5_T	209	60S ribosomal protein L19 (L19E); eukaryotic ribos	100.0
4a17_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	100.0
1vq8_P	149	50S ribosomal protein L19E; ribosome 50S, protein-	100.0
3j21_Q	150	PFEL19, 50S ribosomal protein L19E; archaea, archa	100.0
3jyw_P	176	60S ribosomal protein L19; eukaryotic ribosome, RA	100.0

>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P

Probab=100.00  E-value=2.3e-87  Score=562.22  Aligned_cols=187  Identities=57%  Similarity=0.927  Sum_probs=184.2

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus         1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk   80 (189)
T 3u5e_R            1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK   80 (189)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred             CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae  160 (196)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||++++|++++|+|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae  160 (189)
T 3u5e_R           81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE  160 (189)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHH
Q 029269          161 AKRAKNKASRERKIARREERLAQVRAL  187 (196)
Q Consensus       161 A~r~k~k~~r~rr~~~~~~k~~~~~~~  187 (196)
                      |+++|++++++++++++++++++|++.
T Consensus       161 a~r~k~k~~~~r~~~~~~~k~~~~~~~  187 (189)
T 3u5e_R          161 ARRLKNRAARDRRAQRVAEKRDALLKE  187 (189)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999988864

>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O

Probab=100.00  E-value=2.4e-85  Score=548.33  Aligned_cols=178  Identities=67%  Similarity=1.056  Sum_probs=145.8

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus         1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk   80 (185)
T 4a1a_O            1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK   80 (185)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred             CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae  160 (196)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|++++|+|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae  160 (185)
T 4a1a_O           81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE  160 (185)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred             cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHHH
Q 029269          161 AKRAKNKASRERKIARRE  178 (196)
Q Consensus       161 A~r~k~k~~r~rr~~~~~  178 (196)
                      |+++|++++++++++++|
T Consensus       161 a~r~k~k~~r~~~~~~~~  178 (185)
T 4a1a_O          161 ARRAKNTASRAKRNEKAQ  178 (185)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHhHHHHHH
Confidence            999999999999998876

>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=5.6e-85  Score=550.06  Aligned_cols=193  Identities=64%  Similarity=1.019  Sum_probs=157.1

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus         1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk   80 (196)
T 2zkr_p            1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK   80 (196)
T ss_dssp             --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred             CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae  160 (196)
                      |+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||+.++|++++++|+||+|
T Consensus        81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e  160 (196)
T 2zkr_p           81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE  160 (196)
T ss_dssp             ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029269          161 AKRAKNKASRERKIARREERLAQVRALLAYTIE  193 (196)
Q Consensus       161 A~r~k~k~~r~rr~~~~~~k~~~~~~~~~~~~~  193 (196)
                      |+++++++++++++++++++++++++..+.+.+
T Consensus       161 a~r~k~k~~r~~r~~~~~~~~~~~~~~~~~~~~  193 (196)
T 2zkr_p          161 ARRSKTKEARKRREERLQAKKEEIIKTLSKEEE  193 (196)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHTTHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            999999999999999999999999998877654

>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}

Probab=100.00  E-value=8.9e-81  Score=520.52  Aligned_cols=165  Identities=65%  Similarity=1.019  Sum_probs=161.9

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++||||||+||+||++||||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus         1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk   80 (185)
T 4a17_O            1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK   80 (185)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred             CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae  160 (196)
                      |+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|++++|+|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae  160 (185)
T 4a17_O           81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX  160 (185)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q 029269          161 AKRAK  165 (196)
Q Consensus       161 A~r~k  165 (196)
                      |.-.-
T Consensus       161 a~~~~  165 (185)
T 4a17_O          161 XXXXX  165 (185)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            97543

>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...

Probab=100.00  E-value=4.2e-76  Score=479.20  Aligned_cols=149  Identities=35%  Similarity=0.578  Sum_probs=142.8

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus         1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk   80 (149)
T 1vq8_P            1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS   80 (149)
T ss_dssp             -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred             CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHH
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK  149 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~  149 (196)
                      |+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|+
T Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~  149 (149)
T 1vq8_P           81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA  149 (149)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999874

>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.2e-75  Score=477.05  Aligned_cols=147  Identities=43%  Similarity=0.811  Sum_probs=145.3

Q ss_pred             CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (196)
Q Consensus         1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk   80 (196)
                      |++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus         1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk   80 (150)
T 3j21_Q            1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS   80 (150)
T ss_dssp             CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred             CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhh
Q 029269           81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKA  147 (196)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~  147 (196)
                      |+||+|||||+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+|||++...
T Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~~  147 (150)
T 3j21_Q           81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGL  147 (150)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHST
T ss_pred             ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999999999999998754

>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=100.00  E-value=2e-71  Score=461.90  Aligned_cols=156  Identities=58%  Similarity=0.961  Sum_probs=152.4

Q ss_pred             CcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 029269            2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR   81 (196)
Q Consensus         2 ~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~GkR   81 (196)
                      ++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|||
T Consensus         1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR   80 (176)
T 3jyw_P            1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR   80 (176)
T ss_dssp             CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred             CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhH
Q 029269           82 KGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD  157 (196)
Q Consensus        82 kGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~d  157 (196)
                      +||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++|||+.++|+++...-+.
T Consensus        81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~  156 (176)
T 3jyw_P           81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAA  156 (176)
T ss_dssp             SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGG
T ss_pred             cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1vqop1	143	a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {A	1e-58

>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 143

class: All alpha proteins
fold: Ribosomal protein L19 (L19e)
superfamily: Ribosomal protein L19 (L19e)
family: Ribosomal protein L19 (L19e)
domain: Ribosomal protein L19 (L19e)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  178 bits (454), Expect = 1e-58
 Identities = 51/141 (36%), Positives = 74/141 (52%)

Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
            L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR R
Sbjct: 2   DLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGR 61

Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHD 122
           AR  ++ +  G   G G RKG   AR  +K  W  R+R  R  LR+ R+   +    Y D
Sbjct: 62  ARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRD 121

Query: 123 MYMKVKGNVFKNKRVLMESIH 143
           +Y K  G  F +   L   I 
Sbjct: 122 LYDKAGGGEFDSVADLERYID 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1vqop1	143	Ribosomal protein L19 (L19e) {Archaeon Haloarcula	100.0

>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Ribosomal protein L19 (L19e)
superfamily: Ribosomal protein L19 (L19e)
family: Ribosomal protein L19 (L19e)
domain: Ribosomal protein L19 (L19e)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3.5e-72  Score=451.71  Aligned_cols=142  Identities=36%  Similarity=0.587  Sum_probs=141.0

Q ss_pred             CcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 029269            2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR   81 (196)
Q Consensus         2 ~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~GkR   81 (196)
                      +||++||||||+||+||++|||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|||
T Consensus         1 snL~~QKRLAa~vL~~G~~rVw~DP~~~~eI~~A~tr~dIR~LI~dG~I~~kp~kg~Sr~R~r~~~~~k~kGr~~G~GkR   80 (143)
T d1vqop1           1 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSR   80 (143)
T ss_dssp             CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGGC
T ss_pred             CchHHHHHHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCEEeCCCCCCcHHHHHHHHHHHHhCCCCCcCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHH
Q 029269           82 KGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIH  143 (196)
Q Consensus        82 kGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~  143 (196)
                      +||+|||+|+|+.||++||+||++|++|+|+|+||+|+||+||++||||+|+|++||++||+
T Consensus        81 KGt~~AR~p~K~~Wm~riR~lRr~Lk~lr~~~~Id~~~Yr~LY~kaKGn~Fknk~~L~~~I~  142 (143)
T d1vqop1          81 KGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYID  142 (143)
T ss_dssp             CSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHT
T ss_pred             cCcccccCCchhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCcccCHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999996