Citrus Sinensis ID: 029293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHcHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHcccccccccHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mseepapksipessssavnggrtIEECQDMIQRSLRNPTVKFLRQHLEKagcgfgdkfiKAVHCdkkiaggyvrgegILVCSNHMNIQDEVNQVIIHELIHAYDECraanldwsncahhacseiraghlsgdchyKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVcyndtqpfdrap
Flexible Loop (DISEMBL)
mseepapksipessssavngGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEiraghlsgDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP
Low Complexity Region (SEG)
MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP
Disordered region (IsUnstruct)
*********************************SLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYND********
Disordered Region (DISOPRED)
**********************TIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFD**P
Disordered Region (DISEMBL)
*******************GGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP
Disordered Region (DISPRO)
************SSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
P0CQ26	227	Mitochondrial inner membr	yes	no	0.820	0.704	0.432	2e-34
P0CQ27	227	Mitochondrial inner membr	N/A	no	0.820	0.704	0.432	2e-34
Q6C253	250	Mitochondrial inner membr	yes	no	0.789	0.616	0.433	2e-32
Q7T0P7	235	Mitochondrial inner membr	N/A	no	0.866	0.719	0.402	1e-30
A4IGF3	254	Mitochondrial inner membr	yes	no	0.866	0.665	0.402	9e-30
Q1MTR0	185	Mitochondrial inner membr	yes	no	0.841	0.886	0.378	2e-29
Q9Y6H3	246	Mitochondrial inner membr	yes	no	0.871	0.691	0.382	7e-29
Q5BKJ4	235	Mitochondrial inner membr	yes	no	0.866	0.719	0.390	7e-29
A8QA10	246	Mitochondrial inner membr	N/A	no	0.902	0.715	0.366	2e-28
A5DB08	242	Mitochondrial inner membr	N/A	no	0.805	0.648	0.412	3e-28

>sp|P0CQ26|ATP23_CRYNJ Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATP23 PE=3 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 4/164 (2%)

Query: 32  QRSLRN--PTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQD 89
           +R L N  P + FL  HL+ AGC F    ++   C +  AGG+    GIL+C +    + 
Sbjct: 62  KRDLMNYSPMITFLLNHLKLAGCPFPSSAMQCHPCPENRAGGFSPDHGILLCQDRFFNKK 121

Query: 90  EVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGH 149
            +   + HEL+HA+D CR   +DW N  HHACSEIRA +LSGDC + RE+ RG+      
Sbjct: 122 HMEDTLAHELVHAFDHCRF-KVDWGNLRHHACSEIRAANLSGDCRFTREVKRGFYAFNKQ 180

Query: 150 EQDCVRRRVMKSVIANPYC-SAAAAKDAMEAVWDVCYNDTQPFD 192
            Q CV+RR + SV+ANP C S   A+ A+  VW+ C+ DT+PFD
Sbjct: 181 HQACVKRRAILSVLANPACTSPEMAEKAVNEVWESCFTDTRPFD 224

Has a dual role in the assembly of mitochondrial ATPase. Acts as a protease that removes N-terminal residues of mitochondrial ATPase CF(0) subunit 6 at the intermembrane space side. Also involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of subunit 6 with the subunit 9 ring.
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|P0CQ27|ATP23_CRYNB Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ATP23 PE=3 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 4/164 (2%)

Query: 32  QRSLRN--PTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQD 89
           +R L N  P + FL  HL+ AGC F    ++   C +  AGG+    GIL+C +    + 
Sbjct: 62  KRDLMNYSPMITFLLNHLKLAGCPFPSSAMQCHPCPENRAGGFSPDHGILLCQDRFFNKK 121

Query: 90  EVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGH 149
            +   + HEL+HA+D CR   +DW N  HHACSEIRA +LSGDC + RE+ RG+      
Sbjct: 122 HMEDTLAHELVHAFDHCRF-KVDWGNLRHHACSEIRAANLSGDCRFTREVKRGFYAFNKQ 180

Query: 150 EQDCVRRRVMKSVIANPYC-SAAAAKDAMEAVWDVCYNDTQPFD 192
            Q CV+RR + SV+ANP C S   A+ A+  VW+ C+ DT+PFD
Sbjct: 181 HQACVKRRAILSVLANPACTSPEMAERAVNEVWESCFTDTRPFD 224

Has a dual role in the assembly of mitochondrial ATPase. Acts as a protease that removes N-terminal residues of mitochondrial ATPase CF(0) subunit 6 at the intermembrane space side. Also involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of subunit 6 with the subunit 9 ring.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q6C253|ATP23_YARLI Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATP23 PE=3 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 5/159 (3%)

Query: 37  NPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVII 96
           +PTV+F++  +EK G       +   HCD   AGG+    GILVC NH+  +  +   + 
Sbjct: 90  SPTVRFMKDQIEKIGGDISSNNVFCDHCDDFKAGGFHPKYGILVCQNHVKSRSHLEDTLA 149

Query: 97  HELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMK--IRGHEQDCV 154
           HE++H YD  +   +DW N  HHACSEIRA  LSG+C    EL++G +    RGH Q+C 
Sbjct: 150 HEMVHYYDNTK-FKVDWMNLKHHACSEIRASTLSGECRMMNELMKGKLARLTRGH-QECA 207

Query: 155 RRRVMKSVIANPYCS-AAAAKDAMEAVWDVCYNDTQPFD 192
           +RR + SV+ANP C   A A   +  VWD C+NDT+PFD
Sbjct: 208 KRRAILSVMANPGCKDEAQATQVVNEVWDSCFNDTRPFD 246

Has a dual role in the assembly of mitochondrial ATPase. Acts as a protease that removes N-terminal residues of mitochondrial ATPase CF(0) subunit 6 at the intermembrane space side. Also involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of subunit 6 with the subunit 9 ring.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q7T0P7|ATP23_XENLA Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis PE=2 SV=1

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 109/174 (62%), Gaps = 5/174 (2%)

Query: 26  ECQDMIQRSL-RNPTVKFLRQHLEKAGCG-FGDKFIKAVHCDKKIAGGY-VRGEGILVCS 82
           +CQ M++ +L  +P  K L   ++++GC  + D+      CD  ++GG+      I++C 
Sbjct: 40  KCQLMLKIALDTSPYAKLLLDAMKQSGCTVYKDRHFSCEECDGSVSGGFDAATSEIVLCQ 99

Query: 83  NHMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLR 141
           N+++ Q  +N+V+ HELIHA+D CR A++DW +N  H ACSEIRA +LSGDC    EL R
Sbjct: 100 NNIHQQSHMNRVVTHELIHAFDHCR-AHVDWFNNVRHLACSEIRAANLSGDCTLANELTR 158

Query: 142 GYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
               ++GH Q CVR R ++S++A    S   A+ A++ V+D C+ND +PF R P
Sbjct: 159 FKFGVKGHHQVCVRDRALRSILAVRNISRETAEKAVDEVFDSCFNDHEPFGRIP 212

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|A4IGF3|ATP23_DANRE Mitochondrial inner membrane protease ATP23 homolog OS=Danio rerio GN=zgc:162885 PE=2 SV=1

 Score =  129 bits (325), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 5/174 (2%)

Query: 26  ECQDMIQRSL-RNPTVKFLRQHLEKAGCG-FGDKFIKAVHCDKKIAGGY-VRGEGILVCS 82
           +CQ M+Q ++  +P  K L   ++ +GC  F D+      CD  ++GG+      I++C 
Sbjct: 59  KCQLMLQFAMDTSPYAKLLLGAMKSSGCTVFKDRHFSCEDCDGTVSGGFDAATSQIVLCQ 118

Query: 83  NHMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLR 141
           N+++ Q  +N+V+ HELIHA+D CR A +DW SN  H ACSEIRA +LSGDC +  E  R
Sbjct: 119 NNIHQQAHMNRVVTHELIHAFDHCR-AQVDWFSNYRHLACSEIRAANLSGDCSFINEFSR 177

Query: 142 GYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
               +R H Q+CVR R ++S++A    S   A+  ++ V+D C+ND  PF R P
Sbjct: 178 FNFGLRKHHQECVRGRALRSILAVRRVSREEAERVVDEVFDSCFNDHAPFGRIP 231

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q1MTR0|ATP23_SCHPO Mitochondrial inner membrane protease atp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp23 PE=3 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 102/169 (60%), Gaps = 5/169 (2%)

Query: 29  DMIQRSL--RNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMN 86
           + ++R+L  ++P + FL+  L++  C    K I    CD +  GGY+ G+GI++C N + 
Sbjct: 16  ERVKRALMSQSPVIIFLKTALDRLNCNIEAKDISCQPCDAQSTGGYIPGKGIVLCENRLY 75

Query: 87  IQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMK- 145
            +      I HE+IH +D+ R   +DW+N  H ACSEIRA  +SG+C + +EL  G +K 
Sbjct: 76  TKKMAENTIAHEMIHMFDDHR-FEVDWNNLRHQACSEIRASSMSGECRWTKELRFGNIKT 134

Query: 146 IRGHEQDCVRRRVMKSVIANPYCSAAAAKDAM-EAVWDVCYNDTQPFDR 193
            R H Q+CV+RR   SV  NP C +    +A+ E V++ C+ND +PF++
Sbjct: 135 FRKHHQECVKRRATISVQGNPNCKSKEQAEAIVEEVFNSCFNDFRPFEK 183

Has a dual role in the assembly of mitochondrial ATPase. Acts as a protease that removes N-terminal residues of mitochondrial ATPase CF(0) subunit 6 at the intermembrane space side. Also involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of subunit 6 with the subunit 9 ring.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9Y6H3|ATP23_HUMAN Mitochondrial inner membrane protease ATP23 homolog OS=Homo sapiens GN=XRCC6BP1 PE=1 SV=3

 Score =  126 bits (317), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 5/175 (2%)

Query: 25  EECQDMIQRSLR-NPTVKFLRQHLEKAGCGFG-DKFIKAVHCDKKIAGGY-VRGEGILVC 81
           ++CQ  + ++L  NP VK L   ++ +GC    D+      C+  ++GG+      I++C
Sbjct: 50  QKCQLRLLKTLETNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLC 109

Query: 82  SNHMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELL 140
            N+++ Q  +N+V+ HELIHA+D CR A++DW +N  H ACSE+RA +LSGDC    E+ 
Sbjct: 110 QNNIHNQAHMNRVVTHELIHAFDHCR-AHVDWFTNIRHLACSEVRAANLSGDCSLVNEIF 168

Query: 141 RGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
           R +  ++ H Q CVR R   S++A    S   AK A++ V++ C+ND +PF R P
Sbjct: 169 RLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGRIP 223

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q5BKJ4|ATP23_XENTR Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus tropicalis GN=TEgg079g08.1 PE=2 SV=1

 Score =  126 bits (317), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 5/174 (2%)

Query: 26  ECQDMIQRSL-RNPTVKFLRQHLEKAGCG-FGDKFIKAVHCDKKIAGGYVRGEG-ILVCS 82
           +CQ M++ +L  +P  K L   ++  GC  + D+      CD  ++GG+      I++C 
Sbjct: 40  KCQVMLKIALDTSPYAKLLLDAMKHTGCTVYKDRHFSCEECDGSVSGGFDAATSEIVLCQ 99

Query: 83  NHMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLR 141
           N+++ Q  +N+V+ HELIHA+D CR A++DW +N  H ACSEIRA +LSGDC    EL R
Sbjct: 100 NNIHQQSHMNRVVTHELIHAFDHCR-AHVDWFNNVRHLACSEIRAANLSGDCTLANELTR 158

Query: 142 GYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
               ++ H + CVR R ++S++A    S   A+ A++ V+D C+ND +PF R P
Sbjct: 159 FKFGVKEHHKVCVRDRALRSILAVRNVSRETAEKAVDEVFDSCFNDHEPFGRIP 212

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|A8QA10|ATP23_MALGO Mitochondrial inner membrane protease ATP23 OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) GN=ATP23 PE=3 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 26/202 (12%)

Query: 12  ESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGC------------GFGDKFI 59
           E+    +  GR  +  +D+++ S   P V+F+ +HL    C            G   K +
Sbjct: 43  ETREDVIARGRCEQWKEDLLRTS---PMVRFMVKHLTLIQCNPLSPREDSASQGTPPKLL 99

Query: 60  KAVHCDKKIAGGY--------VRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANL 111
            A  C   IAGG+            GIL+C+N +  +  +   I HE+IH +D CR   +
Sbjct: 100 IA-SCPPDIAGGFSPSPPERPTAESGILLCANRIFSKAHLEDTISHEMIHWWDHCRF-KV 157

Query: 112 DWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYC-SA 170
           DW N  HHACSEIRA  LSGDC++ RE+ R +  +    Q+CV+RR + SV  NP C S 
Sbjct: 158 DWGNLRHHACSEIRAASLSGDCNWTREINRRHFALSKQHQNCVKRRGILSVRGNPACKSE 217

Query: 171 AAAKDAMEAVWDVCYNDTQPFD 192
             A   +E VWD C++DT+PFD
Sbjct: 218 EMAMKVVEDVWDSCFHDTRPFD 239

Has a dual role in the assembly of mitochondrial ATPase. Acts as a protease that removes N-terminal residues of mitochondrial ATPase CF(0) subunit 6 at the intermembrane space side. Also involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of subunit 6 with the subunit 9 ring.

Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) (taxid: 425265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|A5DB08|ATP23_PICGU Mitochondrial inner membrane protease ATP23 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=ATP23 PE=3 SV=2

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 3/160 (1%)

Query: 37  NPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVII 96
           +P+VKF+ +H++K G     K I    CD    GG+    GIL+CSN +  + ++  ++ 
Sbjct: 82  SPSVKFMMEHVQKLGGNLSSKNITCDMCDGMKGGGFHPEMGILLCSNWIKDKWQLEDILT 141

Query: 97  HELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHE-QDCVR 155
           HEL+HAYD  +   +D +N  HHAC+EIRA  LSG+C    E+ +  +   G + Q CVR
Sbjct: 142 HELVHAYDHLK-FKVDLTNLKHHACTEIRASALSGECRILNEIKKTGLGDFGSKFQACVR 200

Query: 156 RRVMKSVIANPYCSAA-AAKDAMEAVWDVCYNDTQPFDRA 194
           RR   SV ANP CS+   A+  + AVW+ C+NDT+PF+R 
Sbjct: 201 RRAAISVSANPNCSSKEEAESVVNAVWESCFNDTRPFERV 240

Has a dual role in the assembly of mitochondrial ATPase. Acts as a protease that removes N-terminal residues of mitochondrial ATPase CF(0) subunit 6 at the intermembrane space side. Also involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of subunit 6 with the subunit 9 ring.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
449450044	195	PREDICTED: mitochondrial inner membrane	1.0	1.0	0.810	6e-94
255572026	187	protein with unknown function [Ricinus c	0.943	0.983	0.836	1e-90
224060173	187	predicted protein [Populus trichocarpa]	0.958	1.0	0.794	1e-89
225452246	195	PREDICTED: mitochondrial inner membrane	1.0	1.0	0.764	9e-89
224065222	174	predicted protein [Populus trichocarpa]	0.892	1.0	0.816	2e-83
18396541	194	ku70-binding-like protein [Arabidopsis t	0.994	1.0	0.697	2e-79
116794410	197	unknown [Picea sitchensis]	0.989	0.979	0.720	6e-79
297828820	195	ku70-binding family protein [Arabidopsis	0.994	0.994	0.693	5e-78
388519949	189	unknown [Medicago truncatula]	0.876	0.904	0.690	3e-71
356558797	192	PREDICTED: mitochondrial inner membrane	0.953	0.968	0.666	1e-69

>gi|449450044|ref|XP_004142774.1| PREDICTED: mitochondrial inner membrane protease ATP23-like [Cucumis sativus] gi|449483813|ref|XP_004156699.1| PREDICTED: mitochondrial inner membrane protease ATP23-like [Cucumis sativus]

 Score =  348 bits (893), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 158/195 (81%), Positives = 179/195 (91%)

Query: 1   MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIK 60
           M+EE  P+     S S+VNGGRT EEC+DMI+RSLR P VKFL +HLEK+GCG GD+FIK
Sbjct: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHA 120
           AVHC+K+I+GGYVRGEGI+VCSNHMNIQDEVNQV+IHELIHA+D+CRAANLDW+NC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRG+MK+RGHEQ+CVRRRVMKS++ANPYC  AAAKDAMEAV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 195
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572026|ref|XP_002526954.1| protein with unknown function [Ricinus communis] gi|223533706|gb|EEF35441.1| protein with unknown function [Ricinus communis]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 154/184 (83%), Positives = 174/184 (94%)

Query: 12  ESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGG 71
           E +++  +GGRTIEECQDMI++SLR P VKFLR+HLEKAGCG GD FIKAV+C+KK++GG
Sbjct: 4   EPTNTPGSGGRTIEECQDMIRKSLRTPMVKFLREHLEKAGCGIGDNFIKAVNCEKKMSGG 63

Query: 72  YVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSG 131
           YV G+GI+VCSNHMN+QDEVNQV+IHELIHAYD+CRAANLDW+NC HHACSEIRAGHLSG
Sbjct: 64  YVSGDGIVVCSNHMNMQDEVNQVVIHELIHAYDDCRAANLDWANCVHHACSEIRAGHLSG 123

Query: 132 DCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPF 191
           DCHYKRELLRGYMKIRGHEQ+CVRRRVMKS+IANPYCS AAAKDAMEAVWDVCYNDT+PF
Sbjct: 124 DCHYKRELLRGYMKIRGHEQECVRRRVMKSMIANPYCSEAAAKDAMEAVWDVCYNDTKPF 183

Query: 192 DRAP 195
           DRAP
Sbjct: 184 DRAP 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060173|ref|XP_002300068.1| predicted protein [Populus trichocarpa] gi|222847326|gb|EEE84873.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/195 (79%), Positives = 175/195 (89%), Gaps = 8/195 (4%)

Query: 1   MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIK 60
           M+EEP   + P S       G T+EEC++MI+RS R P VKFLR+H+EKAGCG G+ F+K
Sbjct: 1   MTEEPG--TTPGSD------GTTVEECKNMIRRSFRTPMVKFLREHMEKAGCGVGENFLK 52

Query: 61  AVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHA 120
           AV+CDKKIAGGYVRGEGI+VCSNHMN QD+VNQV+IHELIHAYD+CRAANLDW++CAHHA
Sbjct: 53  AVNCDKKIAGGYVRGEGIMVCSNHMNTQDDVNQVVIHELIHAYDDCRAANLDWADCAHHA 112

Query: 121 CSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAV 180
           CSEIRAGHLSGDCHYKRELLRGYMK+RGHEQDCV+RRVMKS+IANPYCS AAAKDAMEAV
Sbjct: 113 CSEIRAGHLSGDCHYKRELLRGYMKLRGHEQDCVKRRVMKSMIANPYCSKAAAKDAMEAV 172

Query: 181 WDVCYNDTQPFDRAP 195
           WDVCYNDTQPFDRAP
Sbjct: 173 WDVCYNDTQPFDRAP 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452246|ref|XP_002269112.1| PREDICTED: mitochondrial inner membrane protease ATP23 [Vitis vinifera] gi|296081332|emb|CBI17714.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 173/195 (88%)

Query: 1   MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIK 60
           M  + AP       SS VNGG T++EC+ MIQ+SLR P VKFLR++LEK+GC  GDKFIK
Sbjct: 1   MEGDSAPTIPAADVSSGVNGGMTVKECEQMIQKSLRTPMVKFLRENLEKSGCAIGDKFIK 60

Query: 61  AVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHA 120
           A++C+ K++GGY RGEGI+VCSNHMNIQDEVNQV+IHELIHAYD+CRAANLDW+NCAHHA
Sbjct: 61  AIYCNTKVSGGYARGEGIVVCSNHMNIQDEVNQVVIHELIHAYDDCRAANLDWTNCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAV 180
           CSEIR+GHLSGDCH+KRELLRGY+K+RGH Q+CVRRRVMKSV ANP+CS AAAKDAMEAV
Sbjct: 121 CSEIRSGHLSGDCHFKRELLRGYLKVRGHGQECVRRRVMKSVTANPHCSEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 195
           WDVCYNDT+PFDRAP
Sbjct: 181 WDVCYNDTKPFDRAP 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065222|ref|XP_002301724.1| predicted protein [Populus trichocarpa] gi|222843450|gb|EEE80997.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 142/174 (81%), Positives = 164/174 (94%)

Query: 22  RTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVC 81
           RT++EC+DMI+RS R P V+FLR++LEKAGCG  + F KAV+CDK IAGGYVRG+GI+VC
Sbjct: 1   RTVKECEDMIRRSFRTPMVRFLRENLEKAGCGVSENFFKAVNCDKSIAGGYVRGKGIMVC 60

Query: 82  SNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLR 141
           SNHMNIQD+VNQVI HELIHAYD+C+AANLDW++CAHHACSEIRAGHLSGDCHYKRELLR
Sbjct: 61  SNHMNIQDDVNQVIAHELIHAYDDCQAANLDWADCAHHACSEIRAGHLSGDCHYKRELLR 120

Query: 142 GYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
           GY+K+RGHEQ+CVRRRVMKSVIANP+CS AAA+DAMEAVWDVCYNDT+PFDRAP
Sbjct: 121 GYIKLRGHEQECVRRRVMKSVIANPHCSEAAARDAMEAVWDVCYNDTRPFDRAP 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396541|ref|NP_566205.1| ku70-binding-like protein [Arabidopsis thaliana] gi|6017109|gb|AAF01592.1|AC009895_13 hypothetical protein [Arabidopsis thaliana] gi|13877935|gb|AAK44045.1|AF370230_1 unknown protein [Arabidopsis thaliana] gi|16323466|gb|AAL15227.1| unknown protein [Arabidopsis thaliana] gi|332640421|gb|AEE73942.1| ku70-binding-like protein [Arabidopsis thaliana]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 136/195 (69%), Positives = 162/195 (83%), Gaps = 1/195 (0%)

Query: 1   MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIK 60
           M +  AP S  E +  A  G ++I+ECQDMI+RS RNP VKFL + +EK+GC  GD F+K
Sbjct: 1   MEDAAAPNSGSEFNPGARRG-KSIDECQDMIRRSFRNPIVKFLMEQMEKSGCRVGDNFVK 59

Query: 61  AVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHA 120
           AV C   +AGGY +G GI VCSN++ IQDEVNQV+IHELIHAYDECRA NLDW+NCAHHA
Sbjct: 60  AVVCTGPVAGGYTKGRGITVCSNYLTIQDEVNQVVIHELIHAYDECRAKNLDWTNCAHHA 119

Query: 121 CSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAV 180
           CSEIRAGHLSGDCH+KRELLRG++K+RGHEQ+C++RRV+KS+  NPYCS  AAKDAMEAV
Sbjct: 120 CSEIRAGHLSGDCHFKRELLRGFIKLRGHEQECIKRRVLKSLRGNPYCSEVAAKDAMEAV 179

Query: 181 WDVCYNDTQPFDRAP 195
           WD CYNDT+PFDRAP
Sbjct: 180 WDTCYNDTKPFDRAP 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116794410|gb|ABK27134.1| unknown [Picea sitchensis]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 139/193 (72%), Positives = 162/193 (83%)

Query: 2   SEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKA 61
           S E  P S   +SS   + G T EEC+ MIQ+S R+PTVKFLR+HLEKAGC     F KA
Sbjct: 4   SAEKKPSSSSVASSLYSSTGTTKEECERMIQKSFRSPTVKFLREHLEKAGCSVNRNFFKA 63

Query: 62  VHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHAC 121
           + CDK+I+GGY+R EGILVCSNHM  QDEV+QVIIHELIHAYD+CRAANLDW+NCAHHAC
Sbjct: 64  IECDKQISGGYLREEGILVCSNHMTFQDEVDQVIIHELIHAYDDCRAANLDWTNCAHHAC 123

Query: 122 SEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVW 181
           SEIRAGHLSGDCHYKRELLRG++ +RGHEQ+CV+RRV+KSV ANP+CS  AAK AM+AVW
Sbjct: 124 SEIRAGHLSGDCHYKRELLRGFVSLRGHEQECVKRRVLKSVYANPHCSEEAAKQAMDAVW 183

Query: 182 DVCYNDTQPFDRA 194
           D+CYNDT+PF RA
Sbjct: 184 DICYNDTKPFARA 196

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828820|ref|XP_002882292.1| ku70-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297328132|gb|EFH58551.1| ku70-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 162/196 (82%), Gaps = 2/196 (1%)

Query: 1   MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIK 60
           M +  AP S  E +  A  G ++I+ECQDMI+RS RNP VKFL + +EK+GC  GD F+K
Sbjct: 1   MEDAAAPNSGSEFNPGARRG-KSIDECQDMIRRSFRNPIVKFLMEQMEKSGCRVGDNFVK 59

Query: 61  AVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHA 120
           AV C   +AGGY +G GI VCSN++ IQDEVNQV+IHELIHAYDECRA NLDW+NCAHHA
Sbjct: 60  AVVCTGPVAGGYTKGRGITVCSNYLTIQDEVNQVVIHELIHAYDECRAKNLDWTNCAHHA 119

Query: 121 CSE-IRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEA 179
           CSE IRAGHLSGDCH+KRELLRG++K+RGHEQ+C++RRV+KS+  NPYCS  AAKDAMEA
Sbjct: 120 CSEVIRAGHLSGDCHFKRELLRGFIKLRGHEQECIKRRVLKSLRGNPYCSEVAAKDAMEA 179

Query: 180 VWDVCYNDTQPFDRAP 195
           VWD CYNDT+PFDRAP
Sbjct: 180 VWDTCYNDTKPFDRAP 195

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519949|gb|AFK48036.1| unknown [Medicago truncatula]

 Score =  273 bits (697), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 148/171 (86%)

Query: 24  IEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSN 83
           + EC+ MIQ+ L+ PT +FLR+HLEKAGC   D F KA++CD+  AGGYV GEGI+VC+N
Sbjct: 19  LNECESMIQKGLKTPTARFLREHLEKAGCPVQDNFFKAINCDQNHAGGYVPGEGIVVCAN 78

Query: 84  HMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGY 143
            + +QDEVN+VI+HELIH +D+CRAANLDW++CAHHACSEIRAGHLSGDCHYKRELLRG+
Sbjct: 79  QIEMQDEVNRVIVHELIHVFDDCRAANLDWTDCAHHACSEIRAGHLSGDCHYKRELLRGH 138

Query: 144 MKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRA 194
           +KIRG EQ+C++RRV+ S+ ANP+CS + AK+AMEAVW+ CYNDT PFDRA
Sbjct: 139 LKIRGQEQECIKRRVLTSLAANPFCSGSTAKNAMEAVWETCYNDTAPFDRA 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558797|ref|XP_003547689.1| PREDICTED: mitochondrial inner membrane protease ATP23-like [Glycine max]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/189 (66%), Positives = 153/189 (80%), Gaps = 3/189 (1%)

Query: 9   SIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHCDK-K 67
           ++  S SS    G T+++CQ MI +SL +P VKFLR+HLEKAGC  GD FIKAV CD   
Sbjct: 5   NLSSSDSSTQRRGVTVDQCQRMIHKSLLSPQVKFLREHLEKAGCLVGDNFIKAVKCDNIA 64

Query: 68  IAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAG 127
           IAGGY +GEGI+VC N M  QD+V+Q++ HELIH +D+CRA NLDW+ CAHHACSEIRAG
Sbjct: 65  IAGGYTQGEGIVVCCNEMESQDDVDQLLKHELIHVFDDCRAGNLDWTKCAHHACSEIRAG 124

Query: 128 HLSGDCHYKRELLR-GYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYN 186
           HLSGDCH+KRELL+   +KIRGHEQ+C+RRRVMKS+ ANPYCS   AK +ME+VWDVCYN
Sbjct: 125 HLSGDCHFKRELLKLASLKIRGHEQECIRRRVMKSLSANPYCS-GVAKASMESVWDVCYN 183

Query: 187 DTQPFDRAP 195
           DT+P+DRAP
Sbjct: 184 DTKPYDRAP 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2099664	194	AT3G03420 [Arabidopsis thalian	0.994	1.0	0.697	4.3e-77
UNIPROTKB|E1C7J8	242	XRCC6BP1 "Uncharacterized prot	0.861	0.694	0.404	1.4e-32
ZFIN|ZDB-GENE-070410-102	254	xrcc6bp1 "XRCC6 binding protei	0.866	0.665	0.402	8.8e-31
UNIPROTKB|F1MY08	257	XRCC6BP1 "Uncharacterized prot	0.871	0.661	0.371	1.1e-30
UNIPROTKB|Q9Y6H3	246	XRCC6BP1 "Mitochondrial inner	0.871	0.691	0.382	1.4e-30
UNIPROTKB|F1SKD9	257	XRCC6BP1 "Uncharacterized prot	0.871	0.661	0.377	2.3e-30
POMBASE|SPCC320.12	185	atp23 "mitochondrial inner mem	0.856	0.902	0.375	2.3e-30
UNIPROTKB|F1PBL6	241	XRCC6BP1 "Uncharacterized prot	0.861	0.697	0.358	5.6e-29
UNIPROTKB|J9NYD5	239	XRCC6BP1 "Uncharacterized prot	0.861	0.702	0.358	5.6e-29
ASPGD|ASPL0000001068	239	AN5816 [Emericella nidulans (t	0.887	0.723	0.365	9.1e-29

TAIR|locus:2099664 AT3G03420 [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 136/195 (69%), Positives = 162/195 (83%)

Query:     1 MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLRNPTVKFLRQHLEKAGCGFGDKFIK 60
             M +  AP S  E +  A   G++I+ECQDMI+RS RNP VKFL + +EK+GC  GD F+K
Sbjct:     1 MEDAAAPNSGSEFNPGA-RRGKSIDECQDMIRRSFRNPIVKFLMEQMEKSGCRVGDNFVK 59

Query:    61 AVHCDKKIAGGYVRGEGILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHA 120
             AV C   +AGGY +G GI VCSN++ IQDEVNQV+IHELIHAYDECRA NLDW+NCAHHA
Sbjct:    60 AVVCTGPVAGGYTKGRGITVCSNYLTIQDEVNQVVIHELIHAYDECRAKNLDWTNCAHHA 119

Query:   121 CSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAV 180
             CSEIRAGHLSGDCH+KRELLRG++K+RGHEQ+C++RRV+KS+  NPYCS  AAKDAMEAV
Sbjct:   120 CSEIRAGHLSGDCHFKRELLRGFIKLRGHEQECIKRRVLKSLRGNPYCSEVAAKDAMEAV 179

Query:   181 WDVCYNDTQPFDRAP 195
             WD CYNDT+PFDRAP
Sbjct:   180 WDTCYNDTKPFDRAP 194

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|E1C7J8 XRCC6BP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 70/173 (40%), Positives = 107/173 (61%)

Query:    27 CQDMIQRSLR-NPTVKFLRQHLEKAGCG-FGDKFIKAVHCDKKIAGGYVRGEG-ILVCSN 83
             CQ M++ +L  NP  + L   ++++GC  F D+     +CD  ++GG+      I++C N
Sbjct:    48 CQVMLRMTLETNPYAQLLIAAMKQSGCTVFNDRHFSCENCDGCVSGGFDSATSQIVLCQN 107

Query:    84 HMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLRG 142
             ++  Q  +N+V+ HELIHA+D CRA ++DW  N  H ACSEIRA +LSGDC    E+ R 
Sbjct:   108 NIRHQSHMNRVVAHELIHAFDHCRA-HVDWFKNVKHLACSEIRAANLSGDCTLMNEIARF 166

Query:   143 YMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
                ++GH Q CVR R ++S++A    S   A+ A++ V+D C+ND +PF R P
Sbjct:   167 KFGLKGHHQTCVRDRAIRSILAVRKVSRETAEKAVDEVFDACFNDLEPFGRIP 219

GO:0004222 "metalloendopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-070410-102 xrcc6bp1 "XRCC6 binding protein 1" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 70/174 (40%), Positives = 105/174 (60%)

Query:    26 ECQDMIQRSL-RNPTVKFLRQHLEKAGCG-FGDKFIKAVHCDKKIAGGYVRGEG-ILVCS 82
             +CQ M+Q ++  +P  K L   ++ +GC  F D+      CD  ++GG+      I++C 
Sbjct:    59 KCQLMLQFAMDTSPYAKLLLGAMKSSGCTVFKDRHFSCEDCDGTVSGGFDAATSQIVLCQ 118

Query:    83 NHMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLR 141
             N+++ Q  +N+V+ HELIHA+D CRA  +DW SN  H ACSEIRA +LSGDC +  E  R
Sbjct:   119 NNIHQQAHMNRVVTHELIHAFDHCRA-QVDWFSNYRHLACSEIRAANLSGDCSFINEFSR 177

Query:   142 GYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
                 +R H Q+CVR R ++S++A    S   A+  ++ V+D C+ND  PF R P
Sbjct:   178 FNFGLRKHHQECVRGRALRSILAVRRVSREEAERVVDEVFDSCFNDHAPFGRIP 231

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|F1MY08 XRCC6BP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 65/175 (37%), Positives = 109/175 (62%)

Query:    25 EECQDMIQRSLR-NPTVKFLRQHLEKAGCGFG-DKFIKAVHCDKKIAGGYVRGEG-ILVC 81
             ++CQ M+ ++L  NP VK L   ++ +GC    D+      C+  ++GG+      I++C
Sbjct:    61 QKCQLMLLKTLATNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDSSVSQIVLC 120

Query:    82 SNHMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELL 140
              N++  Q  +N+V+ HELIHA+D CRA +++W +N  H ACSE+RA +LSGDC +  E+ 
Sbjct:   121 QNNIRNQAHMNRVVTHELIHAFDHCRA-HVNWFTNVRHLACSEVRAANLSGDCSFLNEIF 179

Query:   141 RGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
             R +  ++ H Q CVR R ++S++A    +   A+ A++ V++ C+ND +PF R P
Sbjct:   180 RLHFGLKQHHQTCVRDRAIRSILAVRNINKEVAQKAVDEVFESCFNDHEPFGRIP 234

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|Q9Y6H3 XRCC6BP1 "Mitochondrial inner membrane protease ATP23 homolog" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 67/175 (38%), Positives = 106/175 (60%)

Query:    25 EECQDMIQRSLR-NPTVKFLRQHLEKAGCGFG-DKFIKAVHCDKKIAGGYVRGEG-ILVC 81
             ++CQ  + ++L  NP VK L   ++ +GC    D+      C+  ++GG+      I++C
Sbjct:    50 QKCQLRLLKTLETNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLC 109

Query:    82 SNHMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELL 140
              N+++ Q  +N+V+ HELIHA+D CRA ++DW +N  H ACSE+RA +LSGDC    E+ 
Sbjct:   110 QNNIHNQAHMNRVVTHELIHAFDHCRA-HVDWFTNIRHLACSEVRAANLSGDCSLVNEIF 168

Query:   141 RGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
             R +  ++ H Q CVR R   S++A    S   AK A++ V++ C+ND +PF R P
Sbjct:   169 RLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGRIP 223

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=TAS

GO:0004677 "DNA-dependent protein kinase activity" evidence=TAS

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=NAS

UNIPROTKB|F1SKD9 XRCC6BP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 66/175 (37%), Positives = 107/175 (61%)

Query:    25 EECQDMIQRSLR-NPTVKFLRQHLEKAGCGFG-DKFIKAVHCDKKIAGGYVRGEG-ILVC 81
             ++CQ M+ ++L  NP VK L   ++ +GC    ++      C+  ++GG+      I++C
Sbjct:    61 QKCQLMLLKTLETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLC 120

Query:    82 SNHMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELL 140
              N++  Q  +N+V+ HELIHA+D CRA ++DW +N  H ACSE+RA +LSGDC    E+ 
Sbjct:   121 QNNIRNQAHMNRVVTHELIHAFDHCRA-HVDWFTNIRHLACSEVRAANLSGDCSLLNEIF 179

Query:   141 RGYMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
             R +  ++ H Q CVR R + S++A    S   A+ A++ V++ C+ND +PF R P
Sbjct:   180 RLHFGLKQHHQTCVRDRAILSILAVRNISREVAQKAVDEVFESCFNDHEPFGRIP 234

GO:0004222 "metalloendopeptidase activity" evidence=IEA

POMBASE|SPCC320.12 atp23 "mitochondrial inner membrane peptidase Atp23 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 65/173 (37%), Positives = 104/173 (60%)

Query:    25 EECQDMIQRSL--RNPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCS 82
             + C+  ++R+L  ++P + FL+  L++  C    K I    CD +  GGY+ G+GI++C 
Sbjct:    13 KNCE-RVKRALMSQSPVIIFLKTALDRLNCNIEAKDISCQPCDAQSTGGYIPGKGIVLCE 71

Query:    83 NHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRG 142
             N +  +      I HE+IH +D+ R   +DW+N  H ACSEIRA  +SG+C + +EL  G
Sbjct:    72 NRLYTKKMAENTIAHEMIHMFDDHRF-EVDWNNLRHQACSEIRASSMSGECRWTKELRFG 130

Query:   143 YMK-IRGHEQDCVRRRVMKSVIANPYCSAAAAKDAM-EAVWDVCYNDTQPFDR 193
              +K  R H Q+CV+RR   SV  NP C +    +A+ E V++ C+ND +PF++
Sbjct:   131 NIKTFRKHHQECVKRRATISVQGNPNCKSKEQAEAIVEEVFNSCFNDFRPFEK 183

GO:0004222 "metalloendopeptidase activity" evidence=ISM

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=ISO

GO:0034982 "mitochondrial protein processing" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PBL6 XRCC6BP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 62/173 (35%), Positives = 105/173 (60%)

Query:    27 CQDMIQRSLR-NPTVKFLRQHLEKAGCGFG-DKFIKAVHCDKKIAGGYVRGEG-ILVCSN 83
             CQ ++ ++L  NP VK L   ++ +GC    ++      C+  ++GG+      I++C N
Sbjct:    47 CQRLLLKTLETNPYVKLLLDAMKHSGCAVNKERHFSCEDCNGNVSGGFDASTSQIVLCQN 106

Query:    84 HMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLRG 142
             ++  Q  +N+V+ HEL+HA+D CRA +++W ++  H ACSE+RA +LSGDC    E+ R 
Sbjct:   107 NIRNQAHMNRVVTHELVHAFDHCRA-HVNWFTDVRHLACSEVRAANLSGDCSLVNEIFRL 165

Query:   143 YMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
             +  ++ H Q CVR R + S++A    S   A+ A++ V++ C+ND +PF R P
Sbjct:   166 HFGLKRHHQTCVRDRAILSILAVRNISKEVAQKAVDEVFESCFNDQEPFGRIP 218

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|J9NYD5 XRCC6BP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 62/173 (35%), Positives = 105/173 (60%)

Query:    27 CQDMIQRSLR-NPTVKFLRQHLEKAGCGFG-DKFIKAVHCDKKIAGGYVRGEG-ILVCSN 83
             CQ ++ ++L  NP VK L   ++ +GC    ++      C+  ++GG+      I++C N
Sbjct:    45 CQRLLLKTLETNPYVKLLLDAMKHSGCAVNKERHFSCEDCNGNVSGGFDASTSQIVLCQN 104

Query:    84 HMNIQDEVNQVIIHELIHAYDECRAANLDW-SNCAHHACSEIRAGHLSGDCHYKRELLRG 142
             ++  Q  +N+V+ HEL+HA+D CRA +++W ++  H ACSE+RA +LSGDC    E+ R 
Sbjct:   105 NIRNQAHMNRVVTHELVHAFDHCRA-HVNWFTDVRHLACSEVRAANLSGDCSLVNEIFRL 163

Query:   143 YMKIRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP 195
             +  ++ H Q CVR R + S++A    S   A+ A++ V++ C+ND +PF R P
Sbjct:   164 HFGLKRHHQTCVRDRAILSILAVRNISKEVAQKAVDEVFESCFNDQEPFGRIP 216

GO:0004222 "metalloendopeptidase activity" evidence=IEA

ASPGD|ASPL0000001068 AN5816 [Emericella nidulans (taxid:162425)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 65/178 (36%), Positives = 96/178 (53%)

Query:    19 NGGRTIEECQDMIQRSLR-NPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEG 77
             N     + C+D     L+ +P ++++   + + G       I    C  + AGG+    G
Sbjct:    59 NEAADCKRCEDQRDYLLQWSPIIRYMSDSIRQLGGDLSSHNIYCRRCTNRKAGGFDPEYG 118

Query:    78 ILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHA-CSEIRAGHLSGDCHYK 136
             IL+C+N M  Q  +   + HE++HAYD  R   +DW+N   HA C+EIRA  LSG+C + 
Sbjct:   119 ILICANEMKDQGHLEDTMAHEMVHAYDHLRF-KVDWTNNLRHAACTEIRASSLSGECRWA 177

Query:   137 RELLR-GYMKIRGHEQDCVRRRVMKSVIANPYCSAAA-AKDAMEAVWDVCYNDTQPFD 192
             RE  R G  K+    Q+CVRRR + SV+A P C     A+  +  VWD C+ DT+PFD
Sbjct:   178 REFFRRGQWKLTQQHQECVRRRAVLSVMARPGCQDKGHAEKVVNEVWDSCFRDTRPFD 235

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53722	ATP23_YEAST	3, ., 4, ., 2, 4, ., -	0.3819	0.9538	0.8193	yes	no
Q1MTR0	ATP23_SCHPO	3, ., 4, ., 2, 4, ., -	0.3786	0.8410	0.8864	yes	no
Q6FIY7	ATP23_CANGA	3, ., 4, ., 2, 4, ., -	0.3383	0.9384	0.8133	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020602001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (195 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
pfam09768	172	pfam09768, Peptidase_M76, Peptidase M76 family	3e-75

>gnl|CDD|220390 pfam09768, Peptidase_M76, Peptidase M76 family

 Score =  223 bits (570), Expect = 3e-75
 Identities = 79/172 (45%), Positives = 111/172 (64%), Gaps = 4/172 (2%)

Query: 25  EECQDMIQRSLR-NPTVKFLRQHLEKAGC-GFGDKFIKAVHCDKKIAGGYVRGEGILVCS 82
           E+C++ +   L+ +PTV+F+   ++K GC  F D+ I    CD   +GG+   +GIL+C 
Sbjct: 2   EKCEENVDWLLKYSPTVRFMMDQIKKLGCTPFLDRNISCEVCDGSKSGGFDPEKGILLCQ 61

Query: 83  NHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRG 142
           N +  +  +   + HELIHA+D+ R   +DW NC HHACSEIRA +LSGDC + RE  RG
Sbjct: 62  NRIRDKAHLEDTLTHELIHAFDDLRF-KVDWYNCRHHACSEIRAANLSGDCRFGREFKRG 120

Query: 143 YMK-IRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDR 193
                R H Q+CV+RR + SV+ANP C    A+ A+E VWD C+NDT+PFDR
Sbjct: 121 GFGDFRKHHQECVKRRAILSVLANPNCKDEEAEKAVEEVWDSCFNDTRPFDR 172

This is a family of metalloproteases. Proteins in this family are also annotated as Ku70-binding proteins. Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG3314	194	consensus Ku70-binding protein [Replication, recom	100.0
PF09768	173	Peptidase_M76: Peptidase M76 family; InterPro: IPR	100.0
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	96.03
PF14891	174	Peptidase_M91: Effector protein	95.5
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	95.3
smart00731	146	SprT SprT homologues. Predicted to have roles in t	93.98
PF13058	126	DUF3920: Protein of unknown function (DUF3920)	93.93
PF14247	220	DUF4344: Domain of unknown function (DUF4344)	93.89
TIGR02290	587	M3_fam_3 oligoendopeptidase, pepF/M3 family. The M	93.38
KOG3931	484	consensus Uncharacterized conserved protein [Funct	93.34
PF15640	132	Tox-MPTase4: Metallopeptidase toxin 4	93.16
TIGR02289	549	M3_not_pepF oligoendopeptidase, M3 family. This fa	92.34
TIGR00181	591	pepF oligoendopeptidase F. This family represents	92.14
PRK04897	298	heat shock protein HtpX; Provisional	90.15
PRK02391	296	heat shock protein HtpX; Provisional	89.43
PRK03982	288	heat shock protein HtpX; Provisional	89.31
PRK04860	160	hypothetical protein; Provisional	89.08
PF14521	148	Aspzincin_M35: Lysine-specific metallo-endopeptida	89.01
PRK01345	317	heat shock protein HtpX; Provisional	88.79
cd06459	427	M3B_Oligoendopeptidase_F Peptidase family M3B Olig	88.55
PRK03001	283	M48 family peptidase; Provisional	88.51
PRK05457	284	heat shock protein HtpX; Provisional	88.15
PRK02870	336	heat shock protein HtpX; Provisional	87.13
PRK04351	149	hypothetical protein; Provisional	86.34
TIGR00043	110	metalloprotein, YbeY/UPF0054 family. This minimall	85.51
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	85.23
PRK03072	288	heat shock protein HtpX; Provisional	84.58
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	84.51
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	84.41
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	84.27
PF01431	206	Peptidase_M13: Peptidase family M13 This is family	84.04
PF01433	390	Peptidase_M1: Peptidase family M1 This is family M	81.03
PF01457	521	Peptidase_M8: Leishmanolysin This Prosite motif co	80.57

>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]

Probab=100.00  E-value=7.7e-86  Score=544.55  Aligned_cols=193  Identities=59%  Similarity=1.110  Sum_probs=185.4

Q ss_pred             CCCCCCCCCCCCCCCCcCCCCCChhhHHHHHHhHhc-CcHHHHHHHHHHHhCCCCCCCCeEEEeCCCCCcccccCCCCeE
Q 029293            1 MSEEPAPKSIPESSSSAVNGGRTIEECQDMIQRSLR-NPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEGIL   79 (195)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ce~~~~~~l~-sP~Vkfm~~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~p~~gIv   79 (195)
                      |+-.|+|.+ .++..|++++++.+.+|+.+++++|+ ||+||||+++|+++||.+++++|.|++|+++++|||.|+.|||
T Consensus         1 ~~~~~~p~~-~~e~npqar~~ks~~kCq~~~~~~l~~nP~Vkfl~~am~k~~c~~~d~~isc~~C~~~~~GGy~~~~gIv   79 (194)
T KOG3314|consen    1 MEDAAAPNS-GSEFNPQARRGKSIDKCQDMIRRSLRTNPIVKFLMEAMEKSGCRVGDNFISCVVCTGPVAGGYTPGRGIV   79 (194)
T ss_pred             CCcccCccc-cccCCchhhhhhHHHHHHHHHHHHhccCcHHHHHHHHHHHcCCCccCCceEEeeCCCCccCCccCCCceE
Confidence            344555543 56677888899999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             EecCcCCCHHHHHHHHHHHHHHHhhhcccccCCccCchhhhhhhhhhhcccCCcchhHHHhhcccccccchhhHHhhHHH
Q 029293           80 VCSNHMNIQDEVNQVIIHELIHAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMKIRGHEQDCVRRRVM  159 (195)
Q Consensus        80 lC~N~~~~~~~~~~tL~HELIHayD~cR~knvDw~nc~H~ACSEIRAa~LSGdC~~~~E~~rg~~~~~~~~q~CVkrRA~  159 (195)
                      ||||+|+.|+||++|++||||||||+||++ |||.||+|||||||||++|||||+|++|++||+|+.++|||+||||||+
T Consensus        80 lCqN~l~~q~h~n~vv~HElIH~fDd~r~~-vDW~NlrH~ACSEIRAsslSGdC~~~~El~r~~~k~r~hhQeCVkrRat  158 (194)
T KOG3314|consen   80 LCQNRLTIQDHVNQVVIHELIHAFDDCRAK-VDWTNLRHHACSEIRASSLSGDCRFKRELLRGFIKLRGHHQECVKRRAT  158 (194)
T ss_pred             EeccccchHHHHHHHHHHHHHHHHHhhhhh-cccchhhHHHHHHHHhhccCCcchHHHHHHhhhcccchhhHHHHHHhhe
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 029293          160 KSVIANPYCSAAAAKDAMEAVWDVCYNDTQPFDRAP  195 (195)
Q Consensus       160 ~Sv~~~p~C~~~~Ae~aVd~Vf~~C~~Dt~PFd~ip  195 (195)
                      +||.+||+|++++|+++||+||++|||||+|||+||
T Consensus       159 iSv~gnpncSke~Akk~veeV~dSCfnD~rPFdri~  194 (194)
T KOG3314|consen  159 ISVRGNPNCSKEAAKKAVEEVWDSCFNDTRPFDRIP  194 (194)
T ss_pred             eeeccCCCccHHHHHHHHHHHHHHHhccCCCcccCC
Confidence            999999999999999999999999999999999998

>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.7e-80  Score=515.06  Aligned_cols=169  Identities=50%  Similarity=1.001  Sum_probs=165.1

Q ss_pred             hhhHHHHHHhHhc-CcHHHHHHHHHHHhCCC-CCCCCeEEEeCCCCCcccccC-CCCeEEecCcCCCHHHHHHHHHHHHH
Q 029293           24 IEECQDMIQRSLR-NPTVKFLRQHLEKAGCG-FGDKFIKAVHCDKKIAGGYVR-GEGILVCSNHMNIQDEVNQVIIHELI  100 (195)
Q Consensus        24 ~~~Ce~~~~~~l~-sP~Vkfm~~~l~~~Gc~-~~~~~i~c~~C~~~~~GGf~p-~~gIvlC~N~~~~~~~~~~tL~HELI  100 (195)
                      +++||++++++|+ ||+|+||+++|+++||+ +++++|+|++|++.++|||+| +.||+||+|+|+++++|++||+||||
T Consensus         1 ~~~Ce~~~~~~l~~sp~v~fl~~~~~~~gc~~~~~~~i~c~~C~~~~~Ggf~p~~~~I~lC~N~~~~~~~l~~~l~HELI   80 (173)
T PF09768_consen    1 CERCEKMVDKLLKYSPTVRFLMEALKKLGCPPVPPRHIKCEPCDSSVSGGFDPSKKGIVLCQNRIRSQGHLEDTLTHELI   80 (173)
T ss_pred             CcHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCCCeEEEECcCCCcCCccCCCCCEEEeeCCCCCHHHHHHHHHHHHH
Confidence            4789999999999 99999999999999999 779999999999999999999 78899999999999999999999999


Q ss_pred             HHhhhcccccCCccCchhhhhhhhhhhcccCCcchhHHHhhcccc-cccchhhHHhhHHHHHHhhCCCCCHHHHHHHHHH
Q 029293          101 HAYDECRAANLDWSNCAHHACSEIRAGHLSGDCHYKRELLRGYMK-IRGHEQDCVRRRVMKSVIANPYCSAAAAKDAMEA  179 (195)
Q Consensus       101 HayD~cR~knvDw~nc~H~ACSEIRAa~LSGdC~~~~E~~rg~~~-~~~~~q~CVkrRA~~Sv~~~p~C~~~~Ae~aVd~  179 (195)
                      |||||||++ |||+||+||||||||||||||||+|++|++||+++ |++|||+||||||++||.+||+|++++|+++||+
T Consensus        81 HayD~cr~k-vD~~n~~h~ACSEIRAa~LSG~C~~~~e~~r~~~~~~~~~~q~CVkrrA~~Sv~~~p~c~~~~A~~~V~~  159 (173)
T PF09768_consen   81 HAYDHCRAK-VDWTNCRHHACSEIRAANLSGDCRFKQELLRGNFKKFKKQHQECVKRRAILSVEANPNCKDEEAERAVDK  159 (173)
T ss_pred             HHHHHHhcc-CCcccchhHHHHHHHhhcCCCcchhHHHHHcccchhhhhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            999999999 99999999999999999999999999999999887 9999999999999999999999987899999999


Q ss_pred             HHHHHhcCCCCCCC
Q 029293          180 VWDVCYNDTQPFDR  193 (195)
Q Consensus       180 Vf~~C~~Dt~PFd~  193 (195)
                      ||++||+||+|||+
T Consensus       160 Vf~~C~~Dt~PF~~  173 (173)
T PF09768_consen  160 VFDSCYNDTRPFDR  173 (173)
T ss_pred             HHHHHhccCCCCCC
Confidence            99999999999996

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=96.03  E-value=0.0039  Score=49.39  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             CcccccCCCC----eEEecCcCCC--HHHHHHHHHHHHHHHhhhcc
Q 029293           68 IAGGYVRGEG----ILVCSNHMNI--QDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        68 ~~GGf~p~~g----IvlC~N~~~~--~~~~~~tL~HELIHayD~cR  107 (195)
                      .+|-|.+..+    |.|=...+..  ...+.+||.|||+|+|-+..
T Consensus        31 ~~G~~~~~~~~~~~I~ls~~~~~~~~~~~~~~tL~HEm~H~~~~~~   76 (157)
T PF10263_consen   31 TAGRCRYKRRSPCEIRLSPKLLDRNPEEELIDTLLHEMAHAAAYVF   76 (157)
T ss_pred             ceEEEEECCCCceEEEECHHHHHhhHHHHHHHHHHHHHHHHHhhhc
Confidence            4555655544    7777666655  88999999999999999877

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>PF14891 Peptidase_M91: Effector protein

Probab=95.50  E-value=0.0068  Score=49.93  Aligned_cols=45  Identities=33%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHhhhcccccC-Cc-----cCchhhhhhhhhhhcccC-Ccc
Q 029293           89 DEVNQVIIHELIHAYDECRAANL-DW-----SNCAHHACSEIRAGHLSG-DCH  134 (195)
Q Consensus        89 ~~~~~tL~HELIHayD~cR~knv-Dw-----~nc~H~ACSEIRAa~LSG-dC~  134 (195)
                      ..---+|.||||||||+.... . +=     ..-.-..=.|.||--|.. +..
T Consensus       101 ~~p~v~L~HEL~HA~~~~~Gt-~~~~~~~d~~~~~~~~~~E~~avGL~~y~~~  152 (174)
T PF14891_consen  101 RPPFVVLYHELIHAYDYMNGT-MGDDRYGDNDPDSGVGNEELRAVGLPKYDHD  152 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCcCCcCchhhhhhcCCCCCCcc
Confidence            334578999999999999988 4 10     011122235888888854 444

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=95.30  E-value=0.022  Score=41.70  Aligned_cols=39  Identities=28%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             ccc-cCCCC-eEEecCcCCCHHHHHHHHHHHHHHHhhhcccc
Q 029293           70 GGY-VRGEG-ILVCSNHMNIQDEVNQVIIHELIHAYDECRAA  109 (195)
Q Consensus        70 GGf-~p~~g-IvlC~N~~~~~~~~~~tL~HELIHayD~cR~k  109 (195)
                      ||+ .|..+ |++.. ...+...+..+|+|||+|++=.-...
T Consensus         3 ~G~~~~~~~~i~~~~-~~~~~~~~~~~l~HE~~H~~~~~~~~   43 (128)
T PF13485_consen    3 GGVYYPGFNRIVVYF-QGSDEDWLDRVLAHELAHQWFGNYFG   43 (128)
T ss_pred             eEEEecCCCEEEEec-CCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            554 56666 55433 66788888999999999999776665

>smart00731 SprT SprT homologues

Probab=93.98  E-value=0.1  Score=41.70  Aligned_cols=58  Identities=17%  Similarity=0.124  Sum_probs=36.8

Q ss_pred             hCCCCCCCCeEEEeCCCCCcccccCCCC-eEEecCcCC--CHHHHHHHHHHHHHHHhhhcc
Q 029293           50 AGCGFGDKFIKAVHCDKKIAGGYVRGEG-ILVCSNHMN--IQDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        50 ~Gc~~~~~~i~c~~C~~~~~GGf~p~~g-IvlC~N~~~--~~~~~~~tL~HELIHayD~cR  107 (195)
                      .+..++...|....=-....|.|.+..+ |.|=..-+.  ....+.+||.|||+|++-+..
T Consensus        15 F~~~l~~~~i~w~~r~~~~~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~~~   75 (146)
T smart00731       15 FGRKLPHPKVVWNKRLRKTGGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALYLF   75 (146)
T ss_pred             HCCCCCCCEEEEehhhhhhhHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHHHh
Confidence            4556665455544311123455776444 766544444  568899999999999998864

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PF13058 DUF3920: Protein of unknown function (DUF3920)

Probab=93.93  E-value=0.077  Score=42.42  Aligned_cols=50  Identities=30%  Similarity=0.511  Sum_probs=38.0

Q ss_pred             CCCeEEEeCCCC---------------Cccc-ccCCCC-eEEecCcCCCHHHHHHHHHHHHHHHhhhcc
Q 029293           56 DKFIKAVHCDKK---------------IAGG-YVRGEG-ILVCSNHMNIQDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        56 ~~~i~c~~C~~~---------------~~GG-f~p~~g-IvlC~N~~~~~~~~~~tL~HELIHayD~cR  107 (195)
                      -+.|-|..|+..               -.|| |.-+.+ |+||  .+-....+-.||.||+-|++-|-+
T Consensus        26 ~pviFcdTc~an~vl~~LgeeeeefLf~~~g~y~kek~~iFv~--~we~y~qvlktllhefrh~mQh~~   92 (126)
T PF13058_consen   26 IPVIFCDTCDANKVLLSLGEEEEEFLFPAGGFYHKEKQLIFVC--MWEEYEQVLKTLLHEFRHAMQHEK   92 (126)
T ss_pred             CCeEEecccchhHHHHHhccchhhhccccchhhhccccEEEEE--ehHHHHHHHHHHHHHHHHHHHhhh
Confidence            557999999872               2455 455666 9999  355677899999999999998654

>PF14247 DUF4344: Domain of unknown function (DUF4344)

Probab=93.89  E-value=0.19  Score=43.71  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=46.4

Q ss_pred             HHHHhHhc-CcHHHHHHHHHHHhCCCCC-CCCeEEEeCCCCCcccccCCCC-eEEecCcCCC------------------
Q 029293           29 DMIQRSLR-NPTVKFLRQHLEKAGCGFG-DKFIKAVHCDKKIAGGYVRGEG-ILVCSNHMNI------------------   87 (195)
Q Consensus        29 ~~~~~~l~-sP~Vkfm~~~l~~~Gc~~~-~~~i~c~~C~~~~~GGf~p~~g-IvlC~N~~~~------------------   87 (195)
                      +.+...|+ |....-+++.|-.. -+++ +-.|+...| +....-|+|+.. |.||..-+..                  
T Consensus        10 ~~~~~~L~~s~vlE~~~~~in~~-f~LP~~l~i~~~~C-Ge~nA~ydPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~   87 (220)
T PF14247_consen   10 QQIYQLLQESRVLEDVADLINDY-FPLPRDLTIRFAEC-GEDNAFYDPENRSITICYEFVDEILDRFAKANDPDEEYGQA   87 (220)
T ss_pred             HHHHHHHHHcchHHHHHHHHhhc-CCCCCCeEEEEeec-CCCCCccCCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHH
Confidence            45666777 77765555554443 3333 445666669 444556899877 9999432211                  


Q ss_pred             -HHHHHHHHHHHHHHHh
Q 029293           88 -QDEVNQVIIHELIHAY  103 (195)
Q Consensus        88 -~~~~~~tL~HELIHay  103 (195)
                       .+.+..||-||+-||+
T Consensus        88 ~~~~~~~~l~HE~GHAl  104 (220)
T PF14247_consen   88 AIGNVLFTLYHELGHAL  104 (220)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             3456778999999997

>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family

Probab=93.38  E-value=0.37  Score=46.36  Aligned_cols=79  Identities=20%  Similarity=0.325  Sum_probs=57.8

Q ss_pred             CCCCChhhHHHHHHhHhc--CcHHHHHHHHHHHhCCCCCCCCeEEEeCCCCCcccccCC----C-CeEEecCcCCCHHHH
Q 029293           19 NGGRTIEECQDMIQRSLR--NPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRG----E-GILVCSNHMNIQDEV   91 (195)
Q Consensus        19 ~~~~~~~~Ce~~~~~~l~--sP~Vkfm~~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~p~----~-gIvlC~N~~~~~~~~   91 (195)
                      ....+.++..+.+..+|+  +|.+.-+.+.+..-      +.|...+.++..+|||...    . -.++| |.-.+...|
T Consensus       304 ~~~~~~e~a~~~v~~~~~~l~~e~~~~~~~~~~~------~~iD~~~r~gK~~Ga~~~~~~~~~~p~i~~-N~~~~~~~v  376 (587)
T TIGR02290       304 AKTYTFDEAKELVLEAFGKFSPEMADFAEKAFEE------GWIDAEPRPGKRGGAFCTGFPPSKEPRVLM-NYDGSRRDV  376 (587)
T ss_pred             CCeecHHHHHHHHHHHHHhcCHHHHHHHHHHHHc------CCcccCCCCCCCCCcccCCCCCCCCCEEEE-ecCCCchhH
Confidence            345678889999999998  88887777776544      4678888888889999522    1 25666 655555555


Q ss_pred             HHHHHHHHHHHhhh
Q 029293           92 NQVIIHELIHAYDE  105 (195)
Q Consensus        92 ~~tL~HELIHayD~  105 (195)
                       .||+|||=||+=+
T Consensus       377 -~TL~HE~GHa~H~  389 (587)
T TIGR02290       377 -STLAHELGHAYHS  389 (587)
T ss_pred             -HHHHHHhhHHHHH
Confidence             6899999988844

The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.

>KOG3931 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.34  E-value=0.057  Score=50.70  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=21.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHhhhcccc
Q 029293           84 HMNIQDEVNQVIIHELIHAYDECRAA  109 (195)
Q Consensus        84 ~~~~~~~~~~tL~HELIHayD~cR~k  109 (195)
                      .++-+.+|-+||.|||||||=+-...
T Consensus        98 kLRPRkDLVETLLHEMIHAYlFV~n~  123 (484)
T KOG3931|consen   98 KLRPRKDLVETLLHEMIHAYLFVTNN  123 (484)
T ss_pred             ccCchHHHHHHHHHHHHHHheeEecc
Confidence            34778999999999999999766544

>PF15640 Tox-MPTase4: Metallopeptidase toxin 4

Probab=93.16  E-value=0.13  Score=41.77  Aligned_cols=60  Identities=22%  Similarity=0.257  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHHHhCCCCC---CCCeEEEeCCCCCcccccCCCC-eEEecCcCCCHHHHHHHHHHHHHHHhhhcc
Q 029293           38 PTVKFLRQHLEKAGCGFG---DKFIKAVHCDKKIAGGYVRGEG-ILVCSNHMNIQDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        38 P~Vkfm~~~l~~~Gc~~~---~~~i~c~~C~~~~~GGf~p~~g-IvlC~N~~~~~~~~~~tL~HELIHayD~cR  107 (195)
                      -.++.+.+.|.+.|..|.   .+.|.    +...+|||+|..| |+|=-|-      -.--+.||-+||=....
T Consensus        22 ~d~k~~kk~m~~~gIkV~Idkk~kil----P~n~aagFd~~tg~I~lr~~p------t~~~~~HE~~Ha~Qw~~   85 (132)
T PF15640_consen   22 KDIKNFKKEMGKRGIKVKIDKKDKIL----PENKAAGFDPETGEIYLRKNP------TLISALHESYHAKQWLK   85 (132)
T ss_pred             HHHHHHHHHHHhCCcEEEECCccCCC----CccccccCCCCCCcEEEcCCc------hHHHHHHHHHHHHHHHH
Confidence            346778899999998863   22344    6778999999999 7663331      22357899999976655

>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family

Probab=92.34  E-value=0.69  Score=44.33  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=57.1

Q ss_pred             CCChhhHHHHHHhHhc--CcHHHHHHHHHHHhCCCCCCCCeEEEeCCCCCccccc---CCC-CeEEecCcCCCHHHHHHH
Q 029293           21 GRTIEECQDMIQRSLR--NPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYV---RGE-GILVCSNHMNIQDEVNQV   94 (195)
Q Consensus        21 ~~~~~~Ce~~~~~~l~--sP~Vkfm~~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~---p~~-gIvlC~N~~~~~~~~~~t   94 (195)
                      ..+.+.+.+.+..+++  +|...-+.+.+..      ...|.-.+=++..+|||.   |.. .-.|..|.-.+...| .|
T Consensus       268 ~~~~e~~~~~~~~~~~~l~~~~~e~~~~~~~------~~~iD~~~r~gK~~Gayc~~~~~~~~P~I~~Nf~~t~~dv-~T  340 (549)
T TIGR02289       268 FGNVDFLLEKAEKMYKELSLEFYEFFNFMRE------KNLLDLESRKGKAAGGYCTYLPKYKAPFIFSNFNGTSGDI-DV  340 (549)
T ss_pred             CCCHHHHHHHHHHHhcCCCcHHHHHHHHHHh------cCccccCCCCCCCCCcccCCCCCCCCcEEEEeCCCChhHH-HH
Confidence            3677788888999888  8887766655443      346777777888899994   222 245556877777777 68


Q ss_pred             HHHHHHHHhhhc
Q 029293           95 IIHELIHAYDEC  106 (195)
Q Consensus        95 L~HELIHayD~c  106 (195)
                      |+|||=||+=.-
T Consensus       341 L~HElGHa~H~~  352 (549)
T TIGR02289       341 LTHEAGHAFHVY  352 (549)
T ss_pred             HHHHhhHHHHHH
Confidence            999999999543

This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.

>TIGR00181 pepF oligoendopeptidase F

Probab=92.14  E-value=0.74  Score=44.21  Aligned_cols=78  Identities=21%  Similarity=0.294  Sum_probs=54.3

Q ss_pred             CCCChhhHHHHHHhHhc--CcHHHHHHHHHHHhCCCCCCCCeEEEeCCCCCcccccCC----CCeEEecCcCCCHHHHHH
Q 029293           20 GGRTIEECQDMIQRSLR--NPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRG----EGILVCSNHMNIQDEVNQ   93 (195)
Q Consensus        20 ~~~~~~~Ce~~~~~~l~--sP~Vkfm~~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~p~----~gIvlC~N~~~~~~~~~~   93 (195)
                      ...+.++..+.+-..|+  +|...-+++..-      ..+-|.-.+-++..+|||...    ...||+ |.-.+...| .
T Consensus       309 ~~~~~~~a~~~v~~~~~~~g~~~~~~~~~~~------~~~wiD~~~r~gK~~Ga~~~~~~~~~p~il~-N~~~~~~dv-~  380 (591)
T TIGR00181       309 PKFSIEEAKELILKSLEPLGEEYIKILKRAF------NERWVDYAENKGKRSGAYSIGGYKVKPYILM-NWDGTLNSV-F  380 (591)
T ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHh------hCCCeeecCCCCCCCCcccCCCCCCCCeEEE-ecCCCcchH-H
Confidence            35778888888888887  777766543322      235888889999999999532    223333 665555555 6


Q ss_pred             HHHHHHHHHhhh
Q 029293           94 VIIHELIHAYDE  105 (195)
Q Consensus        94 tL~HELIHayD~  105 (195)
                      ||+|||=||+=.
T Consensus       381 TLaHElGHa~H~  392 (591)
T TIGR00181       381 TLAHELGHSMHS  392 (591)
T ss_pred             HHHHHhhhHHHH
Confidence            999999999854

This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.

>PRK04897 heat shock protein HtpX; Provisional

Probab=90.15  E-value=0.68  Score=41.31  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=42.5

Q ss_pred             CcHHHHHHHHHHH-hCCCCCCCCeEEEeCCC--CCcccccCCCCeEEecC---cCCCHHHHHHHHHHHHHHHh
Q 029293           37 NPTVKFLRQHLEK-AGCGFGDKFIKAVHCDK--KIAGGYVRGEGILVCSN---HMNIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        37 sP~Vkfm~~~l~~-~Gc~~~~~~i~c~~C~~--~~~GGf~p~~gIvlC~N---~~~~~~~~~~tL~HELIHay  103 (195)
                      .|.+.-+++.|.+ +|-|++  .+...+=+.  .-+-|+.|.+++++-..   ..-++++++.+|+|||-|..
T Consensus        79 ~p~L~~~v~~la~~~gip~p--~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~  149 (298)
T PRK04897         79 APELWHIVEDMAMVAQIPMP--RVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISHIR  149 (298)
T ss_pred             hHHHHHHHHHHHHHcCCCCC--cEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHHHh
Confidence            5667777777765 676643  344444222  13456677777666554   22378999999999999975

>PRK02391 heat shock protein HtpX; Provisional

Probab=89.43  E-value=1.1  Score=40.24  Aligned_cols=65  Identities=20%  Similarity=0.237  Sum_probs=41.6

Q ss_pred             CcHHHHHHHHHHH-hCCCCCCCCeEEEeCCCC--CcccccCCCCeEEecCcC---CCHHHHHHHHHHHHHHHh
Q 029293           37 NPTVKFLRQHLEK-AGCGFGDKFIKAVHCDKK--IAGGYVRGEGILVCSNHM---NIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        37 sP~Vkfm~~~l~~-~Gc~~~~~~i~c~~C~~~--~~GGf~p~~gIvlC~N~~---~~~~~~~~tL~HELIHay  103 (195)
                      +|.+.-+++.|-+ .|-+.+  .+....=+..  -+-|+.+..++++-...+   -+.++++.+|+|||-|..
T Consensus        75 ~p~L~~~v~~la~~~~~~~p--~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L~~~El~aVlaHElgHi~  145 (296)
T PRK02391         75 YPELHAMVERLCALADLPKP--RVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRLDPDELEAVLAHELSHVK  145 (296)
T ss_pred             CHHHHHHHHHHHHHcCCCCC--cEEEEeCCCCceEEecCCCCCcEEEecHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            5666667666655 666643  3444442211  245666777766664422   478999999999999974

>PRK03982 heat shock protein HtpX; Provisional

Probab=89.31  E-value=0.84  Score=40.32  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=41.4

Q ss_pred             CcHHHHHHHHHHH-hCCCCCCCCeEEEeCCCC--CcccccCCCCeEEecCcC---CCHHHHHHHHHHHHHHHh
Q 029293           37 NPTVKFLRQHLEK-AGCGFGDKFIKAVHCDKK--IAGGYVRGEGILVCSNHM---NIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        37 sP~Vkfm~~~l~~-~Gc~~~~~~i~c~~C~~~--~~GGf~p~~gIvlC~N~~---~~~~~~~~tL~HELIHay  103 (195)
                      +|.++-+++.|.+ .|-+.+  .+...+=+..  -+-|+.|..++|+-...+   -++++++.+|+|||-|.-
T Consensus        67 ~p~L~~~v~~la~~~g~~~p--~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l~~~El~AVlAHElgHi~  137 (288)
T PRK03982         67 APELYRIVERLAERANIPKP--KVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLLNEDELEGVIAHELTHIK  137 (288)
T ss_pred             hHHHHHHHHHHHHHcCCCCC--eEEEEeCCCcceEEeccCCCCeEEEeehHHHhhCCHHHHHHHHHHHHHHHH
Confidence            4556666666654 665543  4555543221  255677777765444433   379999999999999974

>PRK04860 hypothetical protein; Provisional

Probab=89.08  E-value=0.91  Score=37.65  Aligned_cols=67  Identities=19%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCeEEEeCCCCCcccccCCCC-eEEecCcC--CCHHHHHHHHHHHHHHHhhhcc
Q 029293           40 VKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEG-ILVCSNHM--NIQDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        40 Vkfm~~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~p~~g-IvlC~N~~--~~~~~~~~tL~HELIHayD~cR  107 (195)
                      -..+..+.+..|.++....+....=-. .+|-|....+ |-+.-..+  .++..+.+||.|||.|..-|..
T Consensus        10 ~~~~~~a~~~f~~~f~~p~~~f~~R~r-taG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~~~~   79 (160)
T PRK04860         10 RECLAQANLYFKRTFPEPKVSYTQRGT-SAGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLLVYQL   79 (160)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEeecch-hhcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHHHHH
Confidence            367788888899998876666665322 2444554433 66653332  4688899999999999988866

>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A

Probab=89.01  E-value=0.2  Score=40.45  Aligned_cols=71  Identities=14%  Similarity=0.181  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHhCCCCC----CCCeEEEeCCC---CCcccccCCC---CeEEecCcC----CCHHHHHHHHHHHHHHHhh
Q 029293           39 TVKFLRQHLEKAGCGFG----DKFIKAVHCDK---KIAGGYVRGE---GILVCSNHM----NIQDEVNQVIIHELIHAYD  104 (195)
Q Consensus        39 ~Vkfm~~~l~~~Gc~~~----~~~i~c~~C~~---~~~GGf~p~~---gIvlC~N~~----~~~~~~~~tL~HELIHayD  104 (195)
                      .+..+++.+++..-.+.    .-.+.|.+|..   .......|..   -|.||..-.    .....-+.||.|||.|-.+
T Consensus        30 r~~~v~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~a~~~~~~~~~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf~~  109 (148)
T PF14521_consen   30 RYNTVKDVYKKINDGLSSNNVTYTYNCSPCKDCGNNTYAYVYPDSPTYTIYLCPAFFSAPTTGKDSKEGTLIHEWSHFTA  109 (148)
T ss_dssp             HHHHHHHHHHHHHCCHHHCE--CEEE--------SSSSEEE-TTST-TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhccccCCceEEEECCCCCcccccceEEEEECCCCceEEEEChhhcCCCCCCCCchHHHHHHhhhhhhh
Confidence            35566666766554443    25677877874   3334444543   399998644    3446679999999999666


Q ss_pred             hcccc
Q 029293          105 ECRAA  109 (195)
Q Consensus       105 ~cR~k  109 (195)
                      ....+
T Consensus       110 ~~~T~  114 (148)
T PF14521_consen  110 VGGTD  114 (148)
T ss_dssp             CT--B
T ss_pred             hcCCC
Confidence            66665

>PRK01345 heat shock protein HtpX; Provisional

Probab=88.79  E-value=1.1  Score=40.61  Aligned_cols=65  Identities=20%  Similarity=0.277  Sum_probs=42.6

Q ss_pred             CcHHHHHHHHHHH-hCCCCCCCCeEEEeCCCC--CcccccCCCCeEEecCcC---CCHHHHHHHHHHHHHHHh
Q 029293           37 NPTVKFLRQHLEK-AGCGFGDKFIKAVHCDKK--IAGGYVRGEGILVCSNHM---NIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        37 sP~Vkfm~~~l~~-~Gc~~~~~~i~c~~C~~~--~~GGf~p~~gIvlC~N~~---~~~~~~~~tL~HELIHay  103 (195)
                      +|.+.-+++.|-+ +|-+.  ..+...+-+..  -+-|+.|..++|+-...+   -+.++++-+|+|||-|..
T Consensus        66 ~p~L~~~v~~La~~agi~~--p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L~~dEL~aVlAHElgHi~  136 (317)
T PRK01345         66 APELYRMVRDLARRAGLPM--PKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRLSPEEVAGVMAHELAHVK  136 (317)
T ss_pred             CHHHHHHHHHHHHHcCCCC--CcEEEEcCCCcceEEecCCCCCeEEEechHHHhhCCHHHHHHHHHHHHHHHH
Confidence            5677777777755 77764  34555553322  344566666665555322   378999999999999975

>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3

Probab=88.55  E-value=2  Score=38.76  Aligned_cols=78  Identities=23%  Similarity=0.369  Sum_probs=52.3

Q ss_pred             CCChhhHHHHHHhHhc--CcHHHHHHHHHHHhCCCCCCCCeEEEeCCCCCcccccCC----CCeEEecCcCCCHHHHHHH
Q 029293           21 GRTIEECQDMIQRSLR--NPTVKFLRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRG----EGILVCSNHMNIQDEVNQV   94 (195)
Q Consensus        21 ~~~~~~Ce~~~~~~l~--sP~Vkfm~~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~p~----~gIvlC~N~~~~~~~~~~t   94 (195)
                      ..+.++..+.+..+++  +|.+.-+.+.+..      ...|.-.+=++...|||...    ....|..|.-.+...+ .|
T Consensus       153 ~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~------~~~iD~~~r~gK~~gaf~~~~~~~~~p~i~~n~~~~~~~v-~t  225 (427)
T cd06459         153 KYTYEEAKELVLEALSPLGPEYAEFAKRAFE------ERWIDVEPRKGKRSGAYCTGLPPGKHPFILMNFNGTLDDV-FT  225 (427)
T ss_pred             cCcHHHHHHHHHHHHHccCHHHHHHHHHHhh------CCCeeccCCCCCCCCeecCCCCCCCCCeEEecCCCChhhH-HH
Confidence            4667778888888887  7765555444333      44666677777788888533    2256666766666664 68


Q ss_pred             HHHHHHHHhhh
Q 029293           95 IIHELIHAYDE  105 (195)
Q Consensus        95 L~HELIHayD~  105 (195)
                      |+|||=||+=.
T Consensus       226 l~HE~GHa~h~  236 (427)
T cd06459         226 LAHELGHAFHS  236 (427)
T ss_pred             HHHHhhHHHHH
Confidence            99999997533

4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.

>PRK03001 M48 family peptidase; Provisional

Probab=88.51  E-value=1  Score=39.74  Aligned_cols=65  Identities=20%  Similarity=0.276  Sum_probs=42.7

Q ss_pred             CcHHHHHHHHHH-HhCCCCCCCCeEEEeCCC--CCcccccCCCC-eEEecCcC--CCHHHHHHHHHHHHHHHh
Q 029293           37 NPTVKFLRQHLE-KAGCGFGDKFIKAVHCDK--KIAGGYVRGEG-ILVCSNHM--NIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        37 sP~Vkfm~~~l~-~~Gc~~~~~~i~c~~C~~--~~~GGf~p~~g-IvlC~N~~--~~~~~~~~tL~HELIHay  103 (195)
                      +|.++-+++.|. +.|-+++  .+...+=+.  .-+.|+.|..+ |+|=..-+  -+.++++-+|+|||-|.-
T Consensus        66 ~p~L~~~v~~la~~~g~~~p--~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l~~~El~aVlAHElgHi~  136 (283)
T PRK03001         66 APQFYRMVRELAQRAGLPMP--KVYLINEDQPNAFATGRNPEHAAVAATTGILRVLSEREIRGVMAHELAHVK  136 (283)
T ss_pred             cHHHHHHHHHHHHHcCCCCC--eEEEecCCCcceEEecCCCCCeEEEecHHHHhhCCHHHHHHHHHHHHHHHh
Confidence            477888888887 4776653  344443322  23456666666 55544433  379999999999999975

>PRK05457 heat shock protein HtpX; Provisional

Probab=88.15  E-value=1.3  Score=39.47  Aligned_cols=60  Identities=23%  Similarity=0.286  Sum_probs=36.3

Q ss_pred             HHHHHH-HHhCCCCCCCCeEEEeCCCC--CcccccCCCCeEEecC---cCCCHHHHHHHHHHHHHHHh
Q 029293           42 FLRQHL-EKAGCGFGDKFIKAVHCDKK--IAGGYVRGEGILVCSN---HMNIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        42 fm~~~l-~~~Gc~~~~~~i~c~~C~~~--~~GGf~p~~gIvlC~N---~~~~~~~~~~tL~HELIHay  103 (195)
                      -+++.| ++.|-|  .+.+...+.+..  -+-|+.+..++++-..   ..-++++++.+|+|||-|.-
T Consensus        81 ~~v~~la~~~g~p--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L~~~El~aVlAHElgHi~  146 (284)
T PRK05457         81 ETVARQARQAGIG--MPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNMSRDEVEAVLAHEISHIA  146 (284)
T ss_pred             HHHHHHHHhCCCC--CCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhCCHHHHHHHHHHHHHHHH
Confidence            344444 447766  334555554332  2345666666444433   22488999999999999973

>PRK02870 heat shock protein HtpX; Provisional

Probab=87.13  E-value=1.3  Score=40.73  Aligned_cols=65  Identities=22%  Similarity=0.302  Sum_probs=39.7

Q ss_pred             CcHHHHHHHHH-HHhCCCCCCCCeEEEeCCC--CCcccccCCCCeEEecCcC---CCHHHHHHHHHHHHHHH
Q 029293           37 NPTVKFLRQHL-EKAGCGFGDKFIKAVHCDK--KIAGGYVRGEGILVCSNHM---NIQDEVNQVIIHELIHA  102 (195)
Q Consensus        37 sP~Vkfm~~~l-~~~Gc~~~~~~i~c~~C~~--~~~GGf~p~~gIvlC~N~~---~~~~~~~~tL~HELIHa  102 (195)
                      .|.++-+++.| +++|.|.. ..+...+=+.  .-+-|+.|+.+.++....+   -+.++++.+|+|||-|.
T Consensus       114 ~~~L~~~ve~La~~ag~p~~-p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L~~dEL~aVlAHELgHi  184 (336)
T PRK02870        114 ERQLYNVVEELLVAAGLRFM-PKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKLDRDELQAVMAHELSHI  184 (336)
T ss_pred             hHHHHHHHHHHHHHcCCCCC-CeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhCCHHHHHHHHHHHHHHH
Confidence            34566677777 44776522 2344433222  2344677776644443322   37899999999999998

>PRK04351 hypothetical protein; Provisional

Probab=86.34  E-value=1.6  Score=35.70  Aligned_cols=65  Identities=20%  Similarity=0.181  Sum_probs=38.2

Q ss_pred             HHHHHHHHH--hCCCCCCCCeEEEeCCCCCccc-ccCCCC-eEEecCcCCC--HHHHHHHHHHHHHHHhhhcc
Q 029293           41 KFLRQHLEK--AGCGFGDKFIKAVHCDKKIAGG-YVRGEG-ILVCSNHMNI--QDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        41 kfm~~~l~~--~Gc~~~~~~i~c~~C~~~~~GG-f~p~~g-IvlC~N~~~~--~~~~~~tL~HELIHayD~cR  107 (195)
                      +-|.+.+..  .|.+++. .+..-.=- ..+|| |..... |-|=..-+..  +..+.+||.|||.|+.-|..
T Consensus         7 ~~l~~~~s~~~F~~~f~~-~v~~n~Rl-rttgG~~~l~~~~I~lnp~ll~~~~~~~l~~vv~HElcH~~~~~~   77 (149)
T PRK04351          7 QRLVEEISLEYFGKPFRH-QAYFNKRL-RTTGGRYLLKDHHIEFNPKMLEEYGLEELIGIIKHELCHYHLHLE   77 (149)
T ss_pred             HHHHHHHHHHHhCCCCCc-EEEEeccc-hhhhheeecCCCeEEeCHHHHhhccHHHHHhhHHHHHHHHHHHHH
Confidence            344555544  5556552 33332211 23455 545544 6665444444  78899999999999987765

>TIGR00043 metalloprotein, YbeY/UPF0054 family

Probab=85.51  E-value=1.5  Score=34.03  Aligned_cols=59  Identities=15%  Similarity=0.284  Sum_probs=41.2

Q ss_pred             hCCCCCCCCeEEEeCCCCCcccccC-CCC-eEEecCcCCC---------HHHHHHHHHHHHHHH--hhhccc
Q 029293           50 AGCGFGDKFIKAVHCDKKIAGGYVR-GEG-ILVCSNHMNI---------QDEVNQVIIHELIHA--YDECRA  108 (195)
Q Consensus        50 ~Gc~~~~~~i~c~~C~~~~~GGf~p-~~g-IvlC~N~~~~---------~~~~~~tL~HELIHa--yD~cR~  108 (195)
                      .|.+-+.+.+.....+....+++.+ ..| |+||-..+..         +.++..+++|-+-|.  |||-.-
T Consensus        21 r~~d~~TDVLSF~~~~~~~~~~~~~~~lGdI~Is~~~~~~qa~~~~~~~~~e~~~l~iHG~LHLlGyDH~~~   92 (110)
T TIGR00043        21 RDKDYPTDVLSFPYEEEEPPDGFPEEVLGDIVISLEVAKEQAKEYGHSLERELAHLTVHGLLHLLGYDHETE   92 (110)
T ss_pred             hCCCCCCceEeecccCCcccccCCCCcceeEEEcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCCCCCh
Confidence            4566667888887654432344544 367 9999887754         457889999999997  788543

This minimally protein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrates metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and somewhat more weakly to be a metalloproteinase.

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=85.23  E-value=0.57  Score=40.21  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             cccccCCCC-eEEecCcCCC-------HHHHHHHHHHHHHHHhh
Q 029293           69 AGGYVRGEG-ILVCSNHMNI-------QDEVNQVIIHELIHAYD  104 (195)
Q Consensus        69 ~GGf~p~~g-IvlC~N~~~~-------~~~~~~tL~HELIHayD  104 (195)
                      .+| ++..+ |-+=.++|..       +.++..+|.|||+|+|=
T Consensus        67 t~g-d~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q  109 (205)
T PF04450_consen   67 TSG-DDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQ  109 (205)
T ss_pred             Eec-CCCccEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhh
Confidence            344 55555 8777666644       35899999999999984

>PRK03072 heat shock protein HtpX; Provisional

Probab=84.58  E-value=2.1  Score=38.10  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=39.4

Q ss_pred             CcHHHHHHHHHHH-hCCCCCCCCeEEEeCCCC--CcccccCCCCeEEecCcC---CCHHHHHHHHHHHHHHHh
Q 029293           37 NPTVKFLRQHLEK-AGCGFGDKFIKAVHCDKK--IAGGYVRGEGILVCSNHM---NIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        37 sP~Vkfm~~~l~~-~Gc~~~~~~i~c~~C~~~--~~GGf~p~~gIvlC~N~~---~~~~~~~~tL~HELIHay  103 (195)
                      +|...-+++.|-+ +|-++  +.+...+=+..  -+-|..|...++++...+   -++++++.+|+|||-|..
T Consensus        69 ~p~L~~~v~~la~~~g~p~--p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~  139 (288)
T PRK03072         69 APAMYRIVRELSTAARQPM--PRLYISPTAAPNAFATGRNPRNAAVCCTEGILQILNERELRGVLGHELSHVY  139 (288)
T ss_pred             hHHHHHHHHHHHHHcCCCC--CCEEEecCCCCceEEecCCCCCcEEEecHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            5666666666655 77653  34555543322  122345555544444433   478999999999999975

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.51  E-value=2.5  Score=36.97  Aligned_cols=44  Identities=18%  Similarity=0.223  Sum_probs=28.2

Q ss_pred             CeEEEeCCC---C-CcccccCCCCeEEecCcC--CCHHHHHHHHHHHHHHHh
Q 029293           58 FIKAVHCDK---K-IAGGYVRGEGILVCSNHM--NIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        58 ~i~c~~C~~---~-~~GGf~p~~gIvlC~N~~--~~~~~~~~tL~HELIHay  103 (195)
                      .+....++.   + ..|-+.|  .|+|=..-.  .+.++++.+|.|||+|.-
T Consensus       159 ~~~i~~s~~i~sP~~~G~~~p--~I~lP~~~~~~~~~~el~~il~HEl~Hik  208 (299)
T PF05569_consen  159 PIRIRVSSGISSPFVFGFLRP--VIVLPESLLEDLSEEELRAILLHELAHIK  208 (299)
T ss_pred             ceEEEEcCCCCCCeeecCcce--EEEecCccccccCHHHHHHHHHHHHHHHH
Confidence            344444443   2 3455544  266555533  688999999999999974

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=84.41  E-value=1.2  Score=32.08  Aligned_cols=72  Identities=17%  Similarity=0.068  Sum_probs=38.4

Q ss_pred             Cccccc-CCC-CeEEecCcCCCHHHHHHHHHHHHHHHhhhcccccCCc--cCchhhhhhhhhhhcccCCcchhHHHh
Q 029293           68 IAGGYV-RGE-GILVCSNHMNIQDEVNQVIIHELIHAYDECRAANLDW--SNCAHHACSEIRAGHLSGDCHYKRELL  140 (195)
Q Consensus        68 ~~GGf~-p~~-gIvlC~N~~~~~~~~~~tL~HELIHayD~cR~knvDw--~nc~H~ACSEIRAa~LSGdC~~~~E~~  140 (195)
                      ..+|+. +.. +-+|.-|.-.+...-.-+|+|||.|.+=+-... .-+  .+-....--|.+|...++.-=...+.+
T Consensus        17 ~~~~~~~~~~~~~~I~in~~~~~~~~~f~laHELgH~~~~~~~~-~~~~~~~~~~~~~~E~~An~fA~~lL~p~~~~   92 (122)
T PF06114_consen   17 DLGGFSIPKENNPIIFINSNLSPERQRFTLAHELGHILLHHGDE-TFNYYLNYFFNERQEREANAFAAALLMPEEDF   92 (122)
T ss_dssp             -EEEETT----TTEEEEESSS-HHHHHHHHHHHHHHHHHHH-HH-HHHHHHHH--THHHHHHHHHHHHHHHS-HHHH
T ss_pred             CcCEEEEecCcCCEEEECCCCCHHHHHHHHHHHHHHHHhhhccc-cchhhccccchhhHHHHHHHHHHHHhCCHHHH
Confidence            345543 332 445555555888888999999999998766653 100  011122234888887765444444443

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=84.27  E-value=1.6  Score=36.58  Aligned_cols=41  Identities=24%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             cccCCCC-eEEe-cCcCCCHHHHHHHHHHHHHHHhhhcccccCCcc
Q 029293           71 GYVRGEG-ILVC-SNHMNIQDEVNQVIIHELIHAYDECRAANLDWS  114 (195)
Q Consensus        71 Gf~p~~g-IvlC-~N~~~~~~~~~~tL~HELIHayD~cR~knvDw~  114 (195)
                      ||..-.| |+|= -..-.+...+..+|+||+.|.-   |.+.++|+
T Consensus        43 g~~~~~~~i~l~~~~~~~~~~~l~~~iaHE~hH~~---r~~~~~~~   85 (195)
T PF10026_consen   43 GGGAIPGYIFLFLLPNDYSLEELPALIAHEYHHNC---RYEQIGWD   85 (195)
T ss_pred             cccCCCCEEEEEecCCcccHHHHHHHHHHHHHHHH---HHhccCCC
Confidence            4444444 5554 5777788899999999999974   44445553

>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification

Probab=84.04  E-value=0.52  Score=38.83  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccCC
Q 029293           88 QDEVNQVIIHELIHAYDECRAANLD  112 (195)
Q Consensus        88 ~~~~~~tL~HELIHayD~cR~knvD  112 (195)
                      .+-|=-+|+|||+|+||.--.. +|
T Consensus        33 yg~lG~ilahel~hafd~~g~~-~D   56 (206)
T PF01431_consen   33 YGGLGFILAHELMHAFDPEGIN-YD   56 (206)
T ss_dssp             HHTHHHHHHHHHHHCTSTTGGG-B-
T ss_pred             HHHHHHHHHHHHHHHHHHhHhh-cC
Confidence            4567789999999999996666 55

; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.

>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification

Probab=81.03  E-value=4.4  Score=35.96  Aligned_cols=62  Identities=21%  Similarity=0.152  Sum_probs=36.4

Q ss_pred             HHHHHHHH-hCCCCCCCCeEEEeCCCCCcccccCCCCeEEecCcCC-C--------HHHHHHHHHHHHHHHh
Q 029293           42 FLRQHLEK-AGCGFGDKFIKAVHCDKKIAGGYVRGEGILVCSNHMN-I--------QDEVNQVIIHELIHAY  103 (195)
Q Consensus        42 fm~~~l~~-~Gc~~~~~~i~c~~C~~~~~GGf~p~~gIvlC~N~~~-~--------~~~~~~tL~HELIHay  103 (195)
                      .+++.+++ .|.+.+-..+.-...+....||..-..-|++=.+.+. +        +..+..+|+|||.|.|
T Consensus       236 ~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqW  307 (390)
T PF01433_consen  236 KALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQW  307 (390)
T ss_dssp             HHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHH
Confidence            33344433 5777664455555556655576643222677777653 2        4678999999999986

; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....

>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site

Probab=80.57  E-value=0.89  Score=43.62  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=22.5

Q ss_pred             cCCCC-eEEecCcCCC--HHHHHHHHHHHHHHHhhhcc
Q 029293           73 VRGEG-ILVCSNHMNI--QDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        73 ~p~~g-IvlC~N~~~~--~~~~~~tL~HELIHayD~cR  107 (195)
                      .|-.| |.||...|.+  ...+-+|++|||+||.-+-.
T Consensus       189 RP~~G~in~~p~~i~~~~~~~~~~~~~HEi~HaLGFs~  226 (521)
T PF01457_consen  189 RPIAGVININPSYIPSFYFQEFFRTVIHEIAHALGFSS  226 (521)
T ss_dssp             -EEEEEEE--GGG---S--HHHHHHHHHHHHHHTT-SH
T ss_pred             CCeeEEEEEchhHccchhhhcccceeeeeeeeeeeecc
Confidence            56667 9999999988  67788999999999975543

This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	89.21
1r1h_A	696	Neprilysin; enkephalinase, glycoprotein, metallopr	86.86
3dwb_A	670	ECE-1, endothelin-converting enzyme 1; protein, di	83.76
1g12_A	167	Peptidyl-Lys metalloendopeptidase; zinc cordinate,	83.22
3zuk_A	699	Endopeptidase, peptidase family M13; hydrolase-inh	81.96

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.21  E-value=0.95  Score=33.25  Aligned_cols=61  Identities=23%  Similarity=0.325  Sum_probs=33.8

Q ss_pred             HHHHHHHHH-HhCCCCCCCCeEEEeCCCC--CcccccCCCC-eEEec---CcCCCHHHHHHHHHHHHHHHh
Q 029293           40 VKFLRQHLE-KAGCGFGDKFIKAVHCDKK--IAGGYVRGEG-ILVCS---NHMNIQDEVNQVIIHELIHAY  103 (195)
Q Consensus        40 Vkfm~~~l~-~~Gc~~~~~~i~c~~C~~~--~~GGf~p~~g-IvlC~---N~~~~~~~~~~tL~HELIHay  103 (195)
                      ++-+++.|. ++|.+.  ..+....=+..  .+-|+.+..+ |+|=.   +.+ +.+++.-+|+|||-|.-
T Consensus        28 L~~~~~~l~~~~~~~~--~~v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l-~~~El~aVlaHElgH~~   95 (107)
T 3cqb_A           28 LLETVGRQAQQAGIGM--PTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNM-TRDEAEAVLAHEVSHIA   95 (107)
T ss_dssp             HHHHHHHHHHHHTCCC--CEEEEECCSSEEEEEECCC--CCEEEEEHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCC--CeEEEEECCCcCEEEEecCCCCCEEEEcHHHHhhC-CHHHHHHHHHHHHHHHH
Confidence            444444444 477664  24444432211  1223333344 55555   234 99999999999999974

>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*

Probab=86.86  E-value=0.8  Score=43.49  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             HHHHHhCCCCCCCCeEEEeCCCCCcccccCCCC-eEEecCcC----C--------CHHHHHHHHHHHHHHHhhhcccc
Q 029293           45 QHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEG-ILVCSNHM----N--------IQDEVNQVIIHELIHAYDECRAA  109 (195)
Q Consensus        45 ~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~p~~g-IvlC~N~~----~--------~~~~~~~tL~HELIHayD~cR~k  109 (195)
                      ..+.++|-|+++...  ..=+..+..-|.|..+ |++=+-.|    .        +.+.+=-+|+|||+|+||+--.+
T Consensus       467 ~~~~~l~~pvd~~~w--~~~p~~vNA~Y~p~~N~I~~Pa~iLq~Pff~~~~~~a~nyg~iG~vigHEi~H~FD~~G~~  542 (696)
T 1r1h_A          467 KQLKKLREKVDKDEW--ISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRN  542 (696)
T ss_dssp             HHHTTTTSCCCTTCC--SSCSSCSCCEEETTTTEEEEEGGGSSTTTCCTTSCHHHHHHTHHHHHHHHHHGGGSTTTTS
T ss_pred             HHHHHhCCCCChhhc--cCCccceeeEEcCcCCEEEeeHHHhCCcccCccccHHHHhhHHHHHHHHHHHHHhhhhhhe
Confidence            456678989875433  1223346677888877 76654444    2        25668899999999999986433

>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0

Probab=83.76  E-value=1.3  Score=42.00  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=41.2

Q ss_pred             HHHHHhCCCCCCCCeEEEeCCCCCcccccCCCC-eEEecCcC----CC--------HHHHHHHHHHHHHHHhhhcc
Q 029293           45 QHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEG-ILVCSNHM----NI--------QDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        45 ~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~p~~g-IvlC~N~~----~~--------~~~~~~tL~HELIHayD~cR  107 (195)
                      ..|+++|-|+++....  .=+..+...|.|..+ |++=+-.|    .+        .+.+=-+|+|||+|+||+--
T Consensus       444 ~~~~~l~~p~d~~~w~--~~p~~vnAyY~p~~N~I~fPa~iLq~Pff~~~~p~a~nyg~iG~vigHEi~H~FD~~G  517 (670)
T 3dwb_A          444 VTADQLRKAPNRDQWS--MTPPMVNAYYSPTKNEIVFPAGILQAPFYTRSSPKALNFGGIGVVVGHELTHAFDDQG  517 (670)
T ss_dssp             HHHTTTTSCCCTTCCS--SCTTCSCCEEETTTTEEEEEGGGSSTTTCCTTSCHHHHHHTHHHHHHHHHHHTTSTTG
T ss_pred             HHHHHhCCCCChhhcC--CCcceeEEEeccccccccccHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhccCccc
Confidence            4566789888754321  112346677889887 77654443    22        45678899999999999864

>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*

Probab=83.22  E-value=0.65  Score=36.95  Aligned_cols=64  Identities=14%  Similarity=0.190  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhCC-CCCCCCeEEEeCCCC-CcccccCCCC--eEEecCcCC----CHHHHHHHHHHHHHHHhhh
Q 029293           41 KFLRQHLEKAGC-GFGDKFIKAVHCDKK-IAGGYVRGEG--ILVCSNHMN----IQDEVNQVIIHELIHAYDE  105 (195)
Q Consensus        41 kfm~~~l~~~Gc-~~~~~~i~c~~C~~~-~~GGf~p~~g--IvlC~N~~~----~~~~~~~tL~HELIHayD~  105 (195)
                      ..++..+.+.-- .-..-.+.|. |... ..|.-.|...  |+||.-.+.    .....-.||.|||.|+-+-
T Consensus        54 ~~V~~~f~~i~~~~~~~~~~~C~-C~~~~~~Ay~~p~~~~~i~~Cp~f~~~p~~~~~s~a~tllHE~tH~~~v  125 (167)
T 1g12_A           54 STVLQHYTDMNSNDFSSYSFDCT-CTAAGTFAYVYPNRFGTVYLCGAFWKAPTTGTDSQAGTLVHESSHFTRN  125 (167)
T ss_dssp             HHHHHHHHHHHTSCGGGCEEECC-CCCSSCCEECCTTSTTEEEECGGGGGSCSSSTTCHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHhccCCceeEeec-cCCCCcEEEEeCCCCCeEEECCchhcCCCCCCCCchhhHHHhhhccccC
Confidence            445556655422 2224458887 8762 3332235543  999985432    2234578999999999765

>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}

Probab=81.96  E-value=0.99  Score=43.51  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=42.6

Q ss_pred             HHHHHHHhCCCCCCCCeEEEeCCCCCcccccCCCC-eEEecCcCC------------CHHHHHHHHHHHHHHHhhhccc
Q 029293           43 LRQHLEKAGCGFGDKFIKAVHCDKKIAGGYVRGEG-ILVCSNHMN------------IQDEVNQVIIHELIHAYDECRA  108 (195)
Q Consensus        43 m~~~l~~~Gc~~~~~~i~c~~C~~~~~GGf~p~~g-IvlC~N~~~------------~~~~~~~tL~HELIHayD~cR~  108 (195)
                      ....|.++|-|+++....  .=+..+...|.|..+ |++=+-.|.            +.+.+=-+|+|||+|+||+--.
T Consensus       464 ~~~~l~~l~~pvd~~~W~--m~p~~vNAyY~p~~N~I~fPa~iLq~Pff~~~~p~a~nyG~iG~vIgHEi~HgFD~~G~  540 (699)
T 3zuk_A          464 HDRELAKLFGPVDRDEWF--MTPQTVNAYYNPGMNEIVFPAAILQPPFFDPQADEAANYGGIGAVIGHEIGHGFDDQGA  540 (699)
T ss_dssp             HHHHHHGGGSCCCSSCCS--SCTTCSCCEEEGGGTEEEEEGGGSSTTTCCTTSCHHHHHHTHHHHHHHHHHHTTSTTGG
T ss_pred             HHHHHHHhCCCCCccccc--CCcccceeEEecCcCeEEeeHHhcCCCCCCCccchHHHhHHHHHHHHHHHHHHhhhhcc
Confidence            345677899998854321  112235677888877 776655442            2466888999999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d3b7sa3	252	Leukotriene A4 hydrolase catalytic domain {Human (	87.64

>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.27  Score=38.10  Aligned_cols=73  Identities=12%  Similarity=0.098  Sum_probs=42.3

Q ss_pred             HhHhcCcHHHHHHHHHHHhCCCCCCCCeEEEeC-CCCCcccccCCCC-eEEecCcCCCHHHHHHHHHHHHHHHhhhcc
Q 029293           32 QRSLRNPTVKFLRQHLEKAGCGFGDKFIKAVHC-DKKIAGGYVRGEG-ILVCSNHMNIQDEVNQVIIHELIHAYDECR  107 (195)
Q Consensus        32 ~~~l~sP~Vkfm~~~l~~~Gc~~~~~~i~c~~C-~~~~~GGf~p~~g-IvlC~N~~~~~~~~~~tL~HELIHayD~cR  107 (195)
                      +++|+  .++-+++-+++.+.+.+-..+.-... +....||..- .| |++=.+.+.....+..+++||+.|.|=-..
T Consensus        23 ~~~l~--~~~~~l~~~e~~~g~YP~~k~d~v~~~~~~~~ggmE~-~~l~~~~~~~~~~~~~~~~~iaHE~aHqWfG~~   97 (252)
T d3b7sa3          23 AYEFS--ETESMLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMEN-PCLTFVTPTLLAGDKSLSNVIAHQISHSWTGNL   97 (252)
T ss_dssp             HHHTT--THHHHHHHHHHHHCCCCSSCCEEEECCTTCSSSEECC-TTEEEECGGGCCSSSTTTHHHHHHHHTTTBTTT
T ss_pred             HHHHH--HHHHHHHHHHHhCCCCCchhcCEEEeCCCcccccccc-ceeeeecchhccccchHHHHHHHHHHHHHHhhh
Confidence            34444  23444566666655666444444444 3334566643 45 444444555666788999999999884333