Citrus Sinensis ID: 029329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccEEEEEEcccccEEEccccHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHccEEEEcccccccccccccccccccccccccHHccccccccccccHHHHHcHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHcc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHHHcccccEEEEEEcccEEEEccEcHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEcEEEEcHHHHHHHHccEEEEEcccEEEccHHHHccccccccccccEEEEEEccccHHHHHHHHHcHHHHHHHHHHccEEEHHHHHHHccccEEEccccHHHHHHHHHHHHHHcccHEEEEEc
Coil and Loop (DISEMBL)
MLRGLKHAFEtisedssaNVVMIRSsvpkvfcagadlkerrqmspseIHFYVNTLRSTFsflealpiptiavidgaalggGLEMALACDLRICGEAallglpetglaiipgcsdrslSHVILAsdraggtqrlprlvgksVAKDIIftgrkvsgkdamslGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL
Flexible Loop (DISEMBL)
mlrglkhafetisedssanvvmIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAsdraggtqrlprlvgksvakdiiftgrkvsgkdamSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL
Low Complexity Region (SEG)
MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDgaalggglemalaCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL
Disordered region (IsUnstruct)
*******************VVMIRSSVPKVFCAGADL********SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI**
Disordered Region (DISOPRED)
MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL
Disordered Region (DISEMBL)
MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL
Disordered Region (DISPRO)
MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q54HG7	303	Methylglutaconyl-CoA hydr	yes	no	0.764	0.491	0.524	1e-39
Q3TLP5	296	Enoyl-CoA hydratase domai	yes	no	0.841	0.554	0.486	2e-39
O34893	260	Putative enoyl-CoA hydrat	yes	no	0.866	0.65	0.472	9e-39
Q2TBT3	296	Enoyl-CoA hydratase domai	yes	no	0.841	0.554	0.475	1e-38
Q86YB7	292	Enoyl-CoA hydratase domai	yes	no	0.841	0.561	0.469	7e-38
Q13825	339	Methylglutaconyl-CoA hydr	no	no	0.856	0.492	0.451	1e-31
Q9JLZ3	314	Methylglutaconyl-CoA hydr	no	no	0.856	0.531	0.451	2e-31
A4YI89	259	3-hydroxypropionyl-coenzy	yes	no	0.871	0.656	0.408	5e-31
P52046	261	3-hydroxybutyryl-CoA dehy	yes	no	0.856	0.639	0.373	6e-25
C6DAL7	727	Fatty acid oxidation comp	yes	no	0.743	0.199	0.404	5e-24

>sp|Q54HG7|AUHM_DICDI Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 112/164 (68%), Gaps = 15/164 (9%)

Query: 20  VVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79
           VV++RS V  VFC+GADLKER  MS  E   +V++LRS+F+ LE L +PTIA I+G A+G
Sbjct: 94  VVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVG 153

Query: 80  GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGK 139
           GG EM LACD R+  +++ +GLPETGLAIIPG               AGGTQRLPRL+G 
Sbjct: 154 GGTEMVLACDFRVASKSSKMGLPETGLAIIPG---------------AGGTQRLPRLIGI 198

Query: 140 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
             AK++IFTG  +  K A+ +GLV Y    G+A  KA+EIA++I
Sbjct: 199 PRAKELIFTGAILDSKRALEIGLVQYETEKGEAFDKAIEIAKQI 242

Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA.
Dictyostelium discoideum (taxid: 44689)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 8

>sp|Q3TLP5|ECHD2_MOUSE Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 116/183 (63%), Gaps = 19/183 (10%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L  A   + ED    V++ RS+V  VFCAGADLKER QMS  E+  +V  LR   S + A
Sbjct: 68  LLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAA 127

Query: 65  LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
            P+PTIA +DG ALGGGLE+ALACDLRI   +A++GL ET   ++PG             
Sbjct: 128 FPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPG------------- 174

Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 180
             AGGTQRLPR +G ++AK++IFTGR+++G  A  LGLVN+ V   +    A  +AL +A
Sbjct: 175 --AGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALA 232

Query: 181 QEI 183
           QEI
Sbjct: 233 QEI 235

Mus musculus (taxid: 10090)

>sp|O34893|YNGF_BACSU Putative enoyl-CoA hydratase/isomerase YngF OS=Bacillus subtilis (strain 168) GN=yngF PE=3 SV=1

 Score =  159 bits (403), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 118/184 (64%), Gaps = 15/184 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           MLR L+   + I  +S+   V++  +  K FCAGADLKER ++   ++   V+ ++ T +
Sbjct: 32  MLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKEDQVLESVSLIQRTAA 91

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L+ALP P IA I+G+ALGGGLE+ALACDLRI  EAA+LGLPETGLAIIPG         
Sbjct: 92  LLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPG--------- 142

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRLPRL+G+  AK+ I+TGR+V+  +A  +GLV +         KA E+A
Sbjct: 143 ------AGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHVTAPCDLMPKAEELA 196

Query: 181 QEIN 184
             I+
Sbjct: 197 AAIS 200

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q2TBT3|ECHD2_BOVIN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Bos taurus GN=ECHDC2 PE=2 SV=1

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 115/183 (62%), Gaps = 19/183 (10%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L  A   + ED    V++ RS V  VFCAGADLKER QMS +E+  +V  LR   + + A
Sbjct: 68  LLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAA 127

Query: 65  LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
            P PTIA +DG ALGGGLE+ALACDLR+   +A++GL ET   ++PG             
Sbjct: 128 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPG------------- 174

Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 180
             AGGTQRLPR +G ++AK++IFTGR++SG  A +LGLVN+ V   +    A  +A  +A
Sbjct: 175 --AGGTQRLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAVAQNEEGNAAYHRARALA 232

Query: 181 QEI 183
           QEI
Sbjct: 233 QEI 235

Bos taurus (taxid: 9913)

>sp|Q86YB7|ECHD2_HUMAN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Homo sapiens GN=ECHDC2 PE=2 SV=2

 Score =  156 bits (395), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 114/183 (62%), Gaps = 19/183 (10%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L      + ED    V++ RS V  VFCAGADLKER QMS +E+  +V  LR   + + A
Sbjct: 64  LLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAA 123

Query: 65  LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
            P PTIA +DG ALGGGLE+ALACDLR+   +A++GL ET   ++PG             
Sbjct: 124 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPG------------- 170

Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 180
             AGGTQRLPR +G ++AK++IFTGR++SG +A  LGLVN+ V   +    A  +A  +A
Sbjct: 171 --AGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALA 228

Query: 181 QEI 183
           QEI
Sbjct: 229 QEI 231

Homo sapiens (taxid: 9606)

>sp|Q13825|AUHM_HUMAN Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 122/186 (65%), Gaps = 19/186 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +++ L  A + +  D     ++IRS VP +FCAGADLKER +MS SE+  +V+ +R+  +
Sbjct: 107 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 166

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  LP+PTIA IDG ALGGGLE+ALACD+R+   +A +GL ET LAIIPG         
Sbjct: 167 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 217

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                  GGTQRLPR +G S+AK++IF+ R + GK+A ++GL+++ +   Q    A  KA
Sbjct: 218 ------GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKA 271

Query: 177 LEIAQE 182
           L++A+E
Sbjct: 272 LDLARE 277

Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q9JLZ3|AUHM_MOUSE Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 121/186 (65%), Gaps = 19/186 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +L+ L  A + +  D     ++IRS VP +FCAGADLKER +M  SE+  +V+ +RS  +
Sbjct: 82  LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIN 141

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  LP+PTIA IDG ALGGGLE+ALACD+R+   +A +GL ET LAIIPG         
Sbjct: 142 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 192

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                  GGTQRLPR +G S+AK++IF+ R + G++A ++GL+++ +   Q    A  KA
Sbjct: 193 ------GGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKA 246

Query: 177 LEIAQE 182
           L++A+E
Sbjct: 247 LDLARE 252

Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|A4YI89|HPCD_METS5 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 105/186 (56%), Gaps = 16/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +L  L  A      D    V++I +   K FCAGAD+ +  Q++P+E   +    R    
Sbjct: 32  LLEELDRAVSQAESDPEIRVIII-TGKGKAFCAGADITQFNQLTPAEAWKFSKKGREIMD 90

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +EAL  PTIA+I+G ALGGGLE+ALACD+RI  E A LGLPE  L I PG         
Sbjct: 91  KIEALSKPTIAMINGYALGGGLELALACDIRIAAEEAQLGLPEINLGIYPGY-------- 142

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  GGTQRL R++GK  A +++ TG ++ GKDA   GLVN  VP    + +  ++A
Sbjct: 143 -------GGTQRLTRVIGKGRALEMMMTGDRIPGKDAEKYGLVNRVVPLANLEQETRKLA 195

Query: 181 QEINQK 186
           ++I +K
Sbjct: 196 EKIAKK 201

Plays a role in autotrophic carbon fixation via the 3-hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl-CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crotonyl-CoA. Inactive towards (R)-3-hydroxybutyryl-CoA.

Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 6

>sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=crt PE=3 SV=1

 Score =  114 bits (284), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 94/182 (51%), Gaps = 15/182 (8%)

Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF 61
           L+ + +    I  DS    V++  +  K F AGAD+ E ++M+  E   +       F  
Sbjct: 33  LKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKEMNTIEGRKFGILGNKVFRR 92

Query: 62  LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           LE L  P IA ++G ALGGG E+A++CD+RI    A  G PE GL I PG          
Sbjct: 93  LELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNARFGQPEVGLGITPGF--------- 143

Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 181
                 GGTQRL RLVG  +AK +IFT + +   +A+ +GLVN  V   +    A EIA 
Sbjct: 144 ------GGTQRLSRLVGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPSELMNTAKEIAN 197

Query: 182 EI 183
           +I
Sbjct: 198 KI 199

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|C6DAL7|FADJ_PECCP Fatty acid oxidation complex subunit alpha OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3 SV=1

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 88/163 (53%), Gaps = 18/163 (11%)

Query: 9   FETISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPI 67
           FE   + ++   +++ SS P  F AGAD+    Q  S  +        + TF  + ALP 
Sbjct: 53  FEQARQHATLRGLILISSKPDSFIAGADITMLNQCRSAEQAENLAKQGQETFEQIAALPF 112

Query: 68  PTIAVIDGAALGGGLEMALACDLRICG--EAALLGLPETGLAIIPGCSDRSLSHVILASD 125
           P +A I GA LGGGLE+ALACD R+C   E  +LGLPE  L ++PG              
Sbjct: 113 PVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPG-------------- 158

Query: 126 RAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
            +GGTQRLPRL+G   A D+I TGR +    A+  GLV+  VP
Sbjct: 159 -SGGTQRLPRLIGLDSALDLILTGRHLRANQALRQGLVDEAVP 200

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
255583179	325	Methylglutaconyl-CoA hydratase, mitochon	0.876	0.526	0.736	7e-73
296084644	644	unnamed protein product [Vitis vinifera]	0.876	0.265	0.725	1e-70
449458986	328	PREDICTED: methylglutaconyl-CoA hydratas	0.876	0.521	0.720	1e-70
359473869	295	PREDICTED: methylglutaconyl-CoA hydratas	0.876	0.579	0.725	2e-70
224071169	229	predicted protein [Populus trichocarpa]	0.876	0.746	0.698	2e-67
356563366	314	PREDICTED: methylglutaconyl-CoA hydratas	0.912	0.566	0.683	1e-66
20271005	229	enoyl-CoA hydratase [Arabidopsis lyrata	0.876	0.746	0.672	8e-64
2245034	229	enoyl-CoA hydratase [Arabidopsis thalian	0.876	0.746	0.666	2e-63
334186620	301	enoyl-CoA hydratase [Arabidopsis thalian	0.876	0.568	0.666	3e-63
8919878	229	hypothetical protein [Capsella rubella]	0.876	0.746	0.655	4e-63

>gi|255583179|ref|XP_002532355.1| Methylglutaconyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] gi|223527942|gb|EEF30028.1| Methylglutaconyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 137/186 (73%), Positives = 160/186 (86%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           MLRGL++ FETI+ D+SANVVMI SSVPKVFCAGADLKER+ M+PSE+ F+VN+LRSTFS
Sbjct: 97  MLRGLRNTFETINNDASANVVMICSSVPKVFCAGADLKERKIMTPSEVQFFVNSLRSTFS 156

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +E L IPTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPG         
Sbjct: 157 LVEDLCIPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPG--------- 207

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRLPRLVGKSVAK++IFTGRK+ G++AMS+GLVNY VPAG+A+LKALE+A
Sbjct: 208 ------AGGTQRLPRLVGKSVAKELIFTGRKIGGREAMSMGLVNYSVPAGEARLKALEVA 261

Query: 181 QEINQK 186
           +EINQK
Sbjct: 262 REINQK 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084644|emb|CBI25767.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 155/186 (83%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML GL++ FE I+ D+SANVVM+ SSVP+VFCAGADLKER+ M+PSE  F+VN+LRSTFS
Sbjct: 416 MLGGLQNIFEAINRDASANVVMLSSSVPRVFCAGADLKERKTMNPSETRFFVNSLRSTFS 475

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            LEAL +PTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPG         
Sbjct: 476 LLEALHVPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPG--------- 526

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL RLVGKS+AK++IFTGRKV G+DAMS+GLVNY VPAG+A LKALEIA
Sbjct: 527 ------AGGTQRLSRLVGKSIAKELIFTGRKVGGRDAMSVGLVNYCVPAGEAHLKALEIA 580

Query: 181 QEINQK 186
           Q INQK
Sbjct: 581 QHINQK 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458986|ref|XP_004147227.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Cucumis sativus] gi|449514688|ref|XP_004164451.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Cucumis sativus]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 155/186 (83%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           MLRGL+HAFE++  D S NV+MIRSSVPKVFCAGADLKER++M+ SE+H +V +LRS F+
Sbjct: 100 MLRGLRHAFESVDSDPSVNVMMIRSSVPKVFCAGADLKERKKMAASEVHSFVTSLRSAFT 159

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
           FLEALPIPTI+VI+GAALGGGLEMALACDLRICGE A L LPETGLAIIPG         
Sbjct: 160 FLEALPIPTISVIEGAALGGGLEMALACDLRICGEDAKLSLPETGLAIIPG--------- 210

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGT RLPRLVGKS+AK++IFTGRKVSG+DA+S+GLVNY V AG+A  KALEIA
Sbjct: 211 ------AGGTARLPRLVGKSIAKELIFTGRKVSGRDALSIGLVNYCVSAGEAYTKALEIA 264

Query: 181 QEINQK 186
           QEIN+K
Sbjct: 265 QEINEK 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473869|ref|XP_002267334.2| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Vitis vinifera]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 155/186 (83%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML GL++ FE I+ D+SANVVM+ SSVP+VFCAGADLKER+ M+PSE  F+VN+LRSTFS
Sbjct: 67  MLGGLQNIFEAINRDASANVVMLSSSVPRVFCAGADLKERKTMNPSETRFFVNSLRSTFS 126

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            LEAL +PTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPG         
Sbjct: 127 LLEALHVPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPG--------- 177

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL RLVGKS+AK++IFTGRKV G+DAMS+GLVNY VPAG+A LKALEIA
Sbjct: 178 ------AGGTQRLSRLVGKSIAKELIFTGRKVGGRDAMSVGLVNYCVPAGEAHLKALEIA 231

Query: 181 QEINQK 186
           Q INQK
Sbjct: 232 QHINQK 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071169|ref|XP_002303368.1| predicted protein [Populus trichocarpa] gi|222840800|gb|EEE78347.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/186 (69%), Positives = 152/186 (81%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           MLRGL++AFETI  D SA VV+I SSVPKVFCAGADLKER+ M+PSE+  +VN+LRSTFS
Sbjct: 1   MLRGLRNAFETIESDESAQVVLICSSVPKVFCAGADLKERKTMTPSEVQNFVNSLRSTFS 60

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
           F+EAL +PTIAVI+G ALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPG         
Sbjct: 61  FIEALRVPTIAVIEGVALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPG--------- 111

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRLPRLVGKS+AK++IFTGRK+ G++AM +GL NY VPA +A  KALEIA
Sbjct: 112 ------AGGTQRLPRLVGKSLAKELIFTGRKIGGREAMPMGLANYSVPASEAHSKALEIA 165

Query: 181 QEINQK 186
           +EI QK
Sbjct: 166 REIIQK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563366|ref|XP_003549935.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Glycine max]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 149/193 (77%), Gaps = 15/193 (7%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           MLRGL  AFE I++ S ANV MI SSVP VFCAGADLKERR MS SE   +V +LRSTFS
Sbjct: 86  MLRGLNQAFELINQKSYANVAMISSSVPGVFCAGADLKERRAMSQSEAKIFVKSLRSTFS 145

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
           FLE + +PTIAVI+G ALGGGLEMALACD+RICGE AL+GLPETGLAIIPG         
Sbjct: 146 FLEDVRVPTIAVIEGVALGGGLEMALACDIRICGENALMGLPETGLAIIPG--------- 196

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRLPRLVGK++AKDIIFTGRK+ GK+A+SLGLVNY VPAG+A  KAL IA
Sbjct: 197 ------AGGTQRLPRLVGKAIAKDIIFTGRKIDGKEALSLGLVNYCVPAGEAYSKALAIA 250

Query: 181 QEINQKVQSVFRI 193
            +INQK     R+
Sbjct: 251 HDINQKGPVALRM 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20271005|gb|AAM18495.1|AF494369_1 enoyl-CoA hydratase [Arabidopsis lyrata subsp. petraea]

 Score =  248 bits (634), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 125/186 (67%), Positives = 147/186 (79%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML+ L++AFE+I +DSSA VVMIRS VP VFCAGADLKERR MSPSE+H YVN+LR  FS
Sbjct: 1   MLKSLQNAFESIHQDSSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
           F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPG         
Sbjct: 61  FMEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPG--------- 111

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL RLVG+SV+K++IFTGRK+   +A + GLVN  V AG+A  KA+E+A
Sbjct: 112 ------AGGTQRLSRLVGRSVSKELIFTGRKIDAIEAATKGLVNICVTAGEAHEKAIEMA 165

Query: 181 QEINQK 186
           Q+IN+K
Sbjct: 166 QQINEK 171

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2245034|emb|CAB10453.1| enoyl-CoA hydratase [Arabidopsis thaliana] gi|7268430|emb|CAB78722.1| enoyl-CoA hydratase [Arabidopsis thaliana] gi|22136626|gb|AAM91632.1| putative enoyl-CoA hydratase [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 147/186 (79%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML+ L++AFE+I +D+SA VVMIRS VP VFCAGADLKERR MSPSE+H YVN+LR  FS
Sbjct: 1   MLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
           F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPG         
Sbjct: 61  FIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPG--------- 111

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL RLVG+SV+K++IFTGRK+   +A + GLVN  V AG+A  KA+E+A
Sbjct: 112 ------AGGTQRLSRLVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMA 165

Query: 181 QEINQK 186
           Q+IN+K
Sbjct: 166 QQINEK 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186620|ref|NP_193413.2| enoyl-CoA hydratase [Arabidopsis thaliana] gi|332658405|gb|AEE83805.1| enoyl-CoA hydratase [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 147/186 (79%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML+ L++AFE+I +D+SA VVMIRS VP VFCAGADLKERR MSPSE+H YVN+LR  FS
Sbjct: 73  MLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 132

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
           F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPG         
Sbjct: 133 FIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPG--------- 183

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL RLVG+SV+K++IFTGRK+   +A + GLVN  V AG+A  KA+E+A
Sbjct: 184 ------AGGTQRLSRLVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMA 237

Query: 181 QEINQK 186
           Q+IN+K
Sbjct: 238 QQINEK 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8919878|emb|CAB96201.1| hypothetical protein [Capsella rubella]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML+ L++ FE+I +DSSA VVMIRS VP VFCAGADLKERR MSPSE+H YVN+LR  FS
Sbjct: 1   MLKSLQNTFESIHQDSSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
           F+EAL IPTIA I+G ALGGGLEMALACDLRICGE A+ GLPETGLAIIPG         
Sbjct: 61  FIEALSIPTIAAIEGVALGGGLEMALACDLRICGENAVFGLPETGLAIIPG--------- 111

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL RLVG+S++K++IFTGRK+  ++A + GLVN  V AG+A  KA+E+A
Sbjct: 112 ------AGGTQRLSRLVGRSISKELIFTGRKIDAREAANKGLVNICVTAGEAHEKAIEMA 165

Query: 181 QEINQK 186
           Q+IN+K
Sbjct: 166 QQINEK 171

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
ZFIN|ZDB-GENE-030219-147	319	echdc2 "enoyl CoA hydratase do	0.841	0.514	0.431	5.4e-31
ZFIN|ZDB-GENE-040801-95	325	auh "AU RNA binding protein/en	0.835	0.501	0.434	5.4e-31
DICTYBASE|DDB_G0289471	303	auh "methylglutaconyl-CoA hydr	0.779	0.501	0.467	3e-30
TIGR_CMR|BA_2551	262	BA_2551 "enoyl-CoA hydratase/i	0.861	0.641	0.409	3e-30
UNIPROTKB|Q13825	339	AUH "Methylglutaconyl-CoA hydr	0.856	0.492	0.392	3.8e-30
UNIPROTKB|J9P2R5	340	AUH "Uncharacterized protein"	0.856	0.491	0.381	1e-29
MGI|MGI:1338011	314	Auh "AU RNA binding protein/en	0.856	0.531	0.392	1e-29
MGI|MGI:1289238	296	Echdc2 "enoyl Coenzyme A hydra	0.841	0.554	0.426	1e-29
UNIPROTKB|F1S750	252	ECHDC2 "Uncharacterized protei	0.841	0.650	0.420	2.1e-29
RGD|1306087	313	Auh "AU RNA binding protein/en	0.856	0.533	0.381	4.4e-29

ZFIN|ZDB-GENE-030219-147 echdc2 "enoyl CoA hydratase domain containing 2" [Danio rerio (taxid:7955)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 79/183 (43%), Positives = 108/183 (59%)

Query:     5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
             ++    ++  DS+  V++ RS +P VFCAGADLKER QMS +E   +V+ LRS  + + A
Sbjct:    91 MRDLVSSLQHDSAVRVLVFRSLIPGVFCAGADLKERAQMSNAEAELFVHGLRSLMNDIAA 150

Query:    65 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
             LP+PTIA +D             CDLR     A +GL ET   ++PG             
Sbjct:   151 LPMPTIAAVDGFALGGGLELALACDLRTAAHCAQMGLIETTRGLLPG------------- 197

Query:   125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 180
               AGG+QRLPR VG +VAK++IFTGR+V G+ A++LGLVN  VP  Q    A  +AL +A
Sbjct:   198 --AGGSQRLPRTVGFAVAKELIFTGRRVGGEQAVNLGLVNRSVPQNQTGDAAHREALSLA 255

Query:   181 QEI 183
             +EI
Sbjct:   256 REI 258

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-040801-95 auh "AU RNA binding protein/enoyl-Coenzyme A hydratase" [Danio rerio (taxid:7955)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 79/182 (43%), Positives = 109/182 (59%)

Query:     5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
             +  A E++  D++   V++ S VP +FCAGADLKER +M  SE+  +V   R+  S L A
Sbjct:    97 MSEALESMKTDNTVRTVILCSMVPGIFCAGADLKERAKMQQSEVGPFVTKARTLISELGA 156

Query:    65 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
             LP+PTIA ID             CD+R+   +A +GL ET LAIIPG             
Sbjct:   157 LPMPTIAAIDGAALGGGLEMALACDIRVAANSAKMGLVETKLAIIPG------------- 203

Query:   125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 180
               AGGTQRLPR VG S+AK++IF  R ++G++A SLGLVN+ V   +    A L+AL++A
Sbjct:   204 --AGGTQRLPRTVGVSIAKELIFAARVINGEEAKSLGLVNHAVEQNKGGDAAYLRALDLA 261

Query:   181 QE 182
             +E
Sbjct:   262 RE 263

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0289471 auh "methylglutaconyl-CoA hydratase" [Dictyostelium discoideum (taxid:44689)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 78/167 (46%), Positives = 103/167 (61%)

Query:    20 VVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXX 79
             VV++RS V  VFC+GADLKER  MS  E   +V++LRS+F+ LE L +PTIA I+     
Sbjct:    94 VVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVG 153

Query:    80 XXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGK 139
                     CD R+  +++ +GLPETGLAIIPG               AGGTQRLPRL+G 
Sbjct:   154 GGTEMVLACDFRVASKSSKMGLPETGLAIIPG---------------AGGTQRLPRLIGI 198

Query:   140 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 186
               AK++IFTG  +  K A+ +GLV Y    G+A  KA+EIA++I  K
Sbjct:   199 PRAKELIFTGAILDSKRALEIGLVQYETEKGEAFDKAIEIAKQIIPK 245

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004490 "methylglutaconyl-CoA hydratase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0003730 "mRNA 3'-UTR binding" evidence=ISS

GO:0016829 "lyase activity" evidence=IEA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0006552 "leucine catabolic process" evidence=IEA

TIGR_CMR|BA_2551 BA_2551 "enoyl-CoA hydratase/isomerase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 75/183 (40%), Positives = 107/183 (58%)

Query:     1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
             +L  L++    I+E+++  VV++  +  K FCAGADLKER  M+  ++   V+ +R+T  
Sbjct:    34 LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTME 93

Query:    61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
              +E LP P IA I+             CD RI  E+A LGL ET LAIIPG         
Sbjct:    94 MVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPG--------- 144

Query:   121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                   AGGTQRLPRL+G   AK++I+TGR++S ++A   GLV + VP    + KA+EIA
Sbjct:   145 ------AGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIA 198

Query:   181 QEI 183
             ++I
Sbjct:   199 EKI 201

GO:0003824 "catalytic activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

UNIPROTKB|Q13825 AUH "Methylglutaconyl-CoA hydratase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 73/186 (39%), Positives = 110/186 (59%)

Query:     1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
             +++ L  A + +  D     ++IRS VP +FCAGADLKER +MS SE+  +V+ +R+  +
Sbjct:   107 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 166

Query:    61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
              +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG         
Sbjct:   167 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 217

Query:   121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                    GGTQRLPR +G S+AK++IF+ R + GK+A ++GL+++ +   Q    A  KA
Sbjct:   218 ------GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKA 271

Query:   177 LEIAQE 182
             L++A+E
Sbjct:   272 LDLARE 277

GO:0006552 "leucine catabolic process" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0004490 "methylglutaconyl-CoA hydratase activity" evidence=EXP

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|J9P2R5 AUH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 71/186 (38%), Positives = 110/186 (59%)

Query:     1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
             +++ L  A + +  D     +++RS VP +FCAGADLKER +M+PSE+  +V+ +R+   
Sbjct:   108 LVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMNPSEVGPFVSKIRAVID 167

Query:    61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
              +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG         
Sbjct:   168 EIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 218

Query:   121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                    GGTQRLPR +G S+AK++IF+ R + G++A ++GL+++ +   Q    A  KA
Sbjct:   219 ------GGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKA 272

Query:   177 LEIAQE 182
             L++A+E
Sbjct:   273 LDLARE 278

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:1338011 Auh "AU RNA binding protein/enoyl-coenzyme A hydratase" [Mus musculus (taxid:10090)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 73/186 (39%), Positives = 109/186 (58%)

Query:     1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
             +L+ L  A + +  D     ++IRS VP +FCAGADLKER +M  SE+  +V+ +RS  +
Sbjct:    82 LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIN 141

Query:    61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
              +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG         
Sbjct:   142 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 192

Query:   121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                    GGTQRLPR +G S+AK++IF+ R + G++A ++GL+++ +   Q    A  KA
Sbjct:   193 ------GGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKA 246

Query:   177 LEIAQE 182
             L++A+E
Sbjct:   247 LDLARE 252

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0003723 "RNA binding" evidence=IDA

GO:0003730 "mRNA 3'-UTR binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;IDA

GO:0004490 "methylglutaconyl-CoA hydratase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

MGI|MGI:1289238 Echdc2 "enoyl Coenzyme A hydratase domain containing 2" [Mus musculus (taxid:10090)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 78/183 (42%), Positives = 104/183 (56%)

Query:     5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
             L  A   + ED    V++ RS+V  VFCAGADLKER QMS  E+  +V  LR   S + A
Sbjct:    68 LLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAA 127

Query:    65 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
              P+PTIA +D             CDLRI   +A++GL ET   ++PG             
Sbjct:   128 FPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPG------------- 174

Query:   125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 180
               AGGTQRLPR +G ++AK++IFTGR+++G  A  LGLVN+ V   +    A  +AL +A
Sbjct:   175 --AGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALA 232

Query:   181 QEI 183
             QEI
Sbjct:   233 QEI 235

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|F1S750 ECHDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 77/183 (42%), Positives = 104/183 (56%)

Query:     5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
             L  A   + ED    V++ RS V  VFCAGADLKER QMS +E+  +V  LR   + + A
Sbjct:    24 LLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAA 83

Query:    65 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
              P PTIA +D             CDLR+   +A++GL ET   ++PG             
Sbjct:    84 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPG------------- 130

Query:   125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 180
               AGGTQRLPR +G ++AK++IFTGR++SG  A +LGLVN+ V   +    A  +AL +A
Sbjct:   131 --AGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALA 188

Query:   181 QEI 183
             QEI
Sbjct:   189 QEI 191

GO:0003824 "catalytic activity" evidence=IEA

RGD|1306087 Auh "AU RNA binding protein/enoyl-CoA hydratase" [Rattus norvegicus (taxid:10116)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 71/186 (38%), Positives = 109/186 (58%)

Query:     1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
             +L+ L  A + +  D     ++IRS VP +FCAGADLKER +M  SE+  +V+ +R+  +
Sbjct:    81 LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRAVIN 140

Query:    61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
              +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG         
Sbjct:   141 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 191

Query:   121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                    GGTQRLPR +G ++AK++IF+ R + G++A ++GL+++ +   Q    A  KA
Sbjct:   192 ------GGGTQRLPRAIGMALAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKA 245

Query:   177 LEIAQE 182
             L++A+E
Sbjct:   246 LDLARE 251

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=ISO

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA;ISO

GO:0004490 "methylglutaconyl-CoA hydratase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00004614001	SubName- Full=Chromosome undetermined scaffold_752, whole genome shotgun sequence; (229 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027718001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (296 aa)	•	•	•			•	•		0.991
	GSVIVG00024504001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (403 aa)	•			•		•	•		0.891
	GSVIVG00027378001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (347 aa)	•			•			•		0.739
	GSVIVG00020216001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (251 aa)	•			•			•		0.726
	GSVIVG00001258001	SubName- Full=Chromosome undetermined scaffold_114, whole genome shotgun sequence; (390 aa)	•			•		•	•		0.722
	GSVIVG00029076001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (381 aa)	•			•		•	•		0.704
	GSVIVG00023263001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (304 aa)	•					•	•		0.695
	GSVIVG00036606001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (570 aa)	•			•		•	•		0.678
	GSVIVG00020472001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (461 aa)	•			•		•	•		0.671
	GSVIVG00038876001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)	•					•	•		0.639

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	1e-103
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	7e-62
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	5e-56
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	8e-45
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	3e-44
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	9e-41
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	4e-39
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	2e-37
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	6e-36
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	4e-35
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	7e-35
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	1e-32
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	4e-31
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	7e-29
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	8e-29
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	1e-28
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	2e-28
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	2e-28
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	2e-28
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	1e-27
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	1e-26
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	8e-25
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	1e-24
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	8e-24
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	1e-23
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	5e-23
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	1e-22
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	8e-22
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	3e-21
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	6e-21
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	8e-21
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	2e-20
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	3e-20
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	8e-20
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	3e-19
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	4e-19
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	8e-19
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	1e-18
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	2e-18
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	2e-17
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	3e-17
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	3e-17
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	6e-17
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	1e-16
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	3e-16
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	5e-16
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	9e-16
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	2e-15
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	2e-15
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	3e-15
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	3e-15
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	6e-15
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	1e-14
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	2e-14
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	3e-14
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	4e-14
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	6e-14
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-13
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	7e-13
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	8e-13
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-12
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	3e-12
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	3e-12
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	8e-12
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	1e-11
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	6e-10
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	9e-10
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-09
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	1e-09
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	2e-09
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	2e-09
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	5e-09
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	1e-08
PRK08184	550	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase;	2e-08
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	1e-07
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	2e-07
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	2e-07
TIGR03222	546	TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya	6e-07
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	1e-06
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	2e-05
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	5e-05
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	3e-04

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score =  296 bits (760), Expect = e-103
 Identities = 130/186 (69%), Positives = 152/186 (81%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           MLRGL+ AFE I  D+SA VVM+RSSVP VFCAGADLKERR+MSPSE+  +VN+LRSTFS
Sbjct: 23  MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFS 82

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            LEAL IPTIAV++GAALGGGLE+AL+CDLRICGE A+ GLPETGLAIIPG         
Sbjct: 83  SLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPG--------- 133

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRLPRLVG+S AK++IFTGR++  ++A S+GLVNY VPAG+A  KALE+A
Sbjct: 134 ------AGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELA 187

Query: 181 QEINQK 186
           QEINQK
Sbjct: 188 QEINQK 193

Length = 251

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score =  192 bits (490), Expect = 7e-62
 Identities = 87/183 (47%), Positives = 121/183 (66%), Gaps = 15/183 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +L  L++    I+E+++  VV++  +  K FCAGADLKER  M+  ++   V+ +R+T  
Sbjct: 32  LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTME 91

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +E LP P IA I+G ALGGGLE+ALACD RI  E+A LGL ET LAIIPG         
Sbjct: 92  MVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPG--------- 142

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRLPRL+G   AK++I+TGR++S ++A  +GLV + VPA   + KA+EIA
Sbjct: 143 ------AGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIA 196

Query: 181 QEI 183
           ++I
Sbjct: 197 EKI 199

Length = 260

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  175 bits (446), Expect = 5e-56
 Identities = 78/185 (42%), Positives = 108/185 (58%), Gaps = 18/185 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS--EIHFYVNTLRST 58
           ML  L  A +    D    VV++  +  K FCAGADLKE   +S +  E   ++  L+  
Sbjct: 27  MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQEL 85

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
              L  LP P IA ++GAALGGGLE+ALACD+RI  E A  GLPE  L ++PG       
Sbjct: 86  LRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPG------- 138

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                    GGTQRLPRLVG + A++++ TGR++S ++A+ LGLV+  VP  +    ALE
Sbjct: 139 --------GGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALE 190

Query: 179 IAQEI 183
           +A+ +
Sbjct: 191 LARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  148 bits (375), Expect = 8e-45
 Identities = 74/186 (39%), Positives = 106/186 (56%), Gaps = 16/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +L  L  A E + +D S   +++    P  F AGAD+KE      ++   +    +  +S
Sbjct: 26  LLTELIQALEKLEQDPSVKAIVLTGG-PGAFSAGADIKEMAAEPLAQQAQFSLEAQDLWS 84

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            LE LP P IA ++G ALGGGLE+ALACD RI  + A  GLPE  L IIPG         
Sbjct: 85  RLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEVKLGIIPG--------- 135

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRLPR++G S A +++ TGR++  ++A+ +GLV+  VP  Q   +A+E+A
Sbjct: 136 ------AGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELA 189

Query: 181 QEINQK 186
           Q +  K
Sbjct: 190 QRLADK 195

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  147 bits (372), Expect = 3e-44
 Identities = 73/185 (39%), Positives = 99/185 (53%), Gaps = 18/185 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTF 59
           ML  L  A +    D    VV++  +  K F AGADLKE             +   +   
Sbjct: 33  MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLL 91

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             L  LP P IA ++G ALGGGLE+ALACD+RI  E A  GLPE  L ++PG        
Sbjct: 92  RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPG-------- 143

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP-AGQAQLKALE 178
                   GGTQRLPRL+G+  AK+++ TG  +S  +A+ LGLV+  VP A +   +ALE
Sbjct: 144 -------DGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALE 196

Query: 179 IAQEI 183
           +A+ +
Sbjct: 197 LARRL 201

Length = 257

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  138 bits (350), Expect = 9e-41
 Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 23/195 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M + L  A E  + D +  VV++  +  + F AG D+K+  +  P       + L     
Sbjct: 33  MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP----PDELAPVNR 87

Query: 61  FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
           FL A+   P P +A ++G A+G G+ +ALACDL    E+A   LP   L + P       
Sbjct: 88  FLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPD------ 141

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                    AGG+  LPRL+G++ A +++  G  +S ++A+ +GLVN  VPA +   +A 
Sbjct: 142 ---------AGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEAD 192

Query: 178 EIAQEINQKVQSVFR 192
             A ++     S  R
Sbjct: 193 AQAAKLAAGPASALR 207

Length = 259

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score =  133 bits (338), Expect = 4e-39
 Identities = 66/186 (35%), Positives = 94/186 (50%), Gaps = 17/186 (9%)

Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFS 60
           L  L    + + +D +  VV+I     + F AGAD+KE        +        + TF 
Sbjct: 30  LHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFE 88

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +E    P IA I GAALGGGLE+A++C +R   E+A LGLPE  L +IPG         
Sbjct: 89  RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPG--------- 139

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                   GTQRLPR VGK+ A +++ T   ++G +A+  GLVN   P       A ++A
Sbjct: 140 ------FAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLA 193

Query: 181 QEINQK 186
           ++I  K
Sbjct: 194 KKIAGK 199

Length = 257

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  130 bits (328), Expect = 2e-37
 Identities = 66/182 (36%), Positives = 96/182 (52%), Gaps = 15/182 (8%)

Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF 61
           L+ L    + I  D +   V++  +  K F AGAD+ E + ++  E   +       F  
Sbjct: 33  LKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRK 92

Query: 62  LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           LE L  P IA I+G ALGGG E+++ACD+RI  E A  G PE GL I PG          
Sbjct: 93  LENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPG---------- 142

Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 181
                 GGTQRL R+VG   AK++I+TG  ++ ++A+ +GLVN  V   +   +A  +A 
Sbjct: 143 -----FGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALAN 197

Query: 182 EI 183
           +I
Sbjct: 198 KI 199

Length = 260

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score =  125 bits (317), Expect = 6e-36
 Identities = 71/198 (35%), Positives = 97/198 (48%), Gaps = 32/198 (16%)

Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE--------RRQMSPSEIHFYVN 53
           L+ LK     ++ D     ++I     K F AGADL           R+M+     F   
Sbjct: 31  LQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMA---RRF--- 84

Query: 54  TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCS 113
                F  L A    +IA I+G A+GGGLE ALACD+RI  E A + LPE  + ++P C 
Sbjct: 85  --GEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLP-C- 140

Query: 114 DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 173
                        AGGTQ LP LVG+  AK +I  G +V    A+ +GLV   V  G+A+
Sbjct: 141 -------------AGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAR 187

Query: 174 LKALEIAQEI-NQKVQSV 190
             AL +AQ++ NQ   +V
Sbjct: 188 EAALALAQKVANQSPSAV 205

Length = 258

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  130 bits (328), Expect = 4e-35
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 38/193 (19%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLK---------ERRQMSPSEIHFYVNTL 55
           ++   + + ED     V+  S  P  F AGAD+          E   ++           
Sbjct: 39  VRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALA--------RQG 90

Query: 56  RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGCS 113
           +  F+ +EALPIP +A I GA LGGGLE+ALAC  R+C +    +LGLPE  L ++PG  
Sbjct: 91  QQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG-- 148

Query: 114 DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 173
                        +GGTQRLPRL+G S A D+I TG+++  K A+ LGLV+  VP   + 
Sbjct: 149 -------------SGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP--HSI 193

Query: 174 LKALEIAQEINQK 186
           L  LE+A E+ +K
Sbjct: 194 L--LEVAVELAKK 204

Length = 708

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  129 bits (326), Expect = 7e-35
 Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 19/181 (10%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR---QMSPSEIHFYVNTLRSTFSF 61
           L  A + +   S    +++ S+    F  GAD+ E          E+  +++   S F+ 
Sbjct: 39  LGEALDALEAQSDLKGLLLTSAKD-AFIVGADITEFLSLFAAPEEELSQWLHFANSIFNR 97

Query: 62  LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           LE LP+PT+A I+G ALGGG E  LA D R+    A +GLPET L I+PG          
Sbjct: 98  LEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPG---------- 147

Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 181
                 GGT RLPRL+G   A + I  G+ V  +DA+ +G V+  V   + Q  AL + +
Sbjct: 148 -----FGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLK 202

Query: 182 E 182
           +
Sbjct: 203 Q 203

Length = 715

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score =  117 bits (294), Expect = 1e-32
 Identities = 68/182 (37%), Positives = 96/182 (52%), Gaps = 24/182 (13%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L   F  +SED     +++     KVF AGAD+KE       E++     LR T  + EA
Sbjct: 40  LAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGAIEMY-----LRHTERYWEA 93

Query: 65  L---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           +   P P IA ++G ALGGG E+A+  D+ + GE+A  G PE  + ++PG          
Sbjct: 94  IAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPG---------- 143

Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 181
                AGGTQRL R VGK  A  +  TG  V   +A+++GLV+  V   Q   +ALE+A+
Sbjct: 144 -----AGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAR 198

Query: 182 EI 183
           EI
Sbjct: 199 EI 200

Length = 261

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score =  113 bits (284), Expect = 4e-31
 Identities = 61/181 (33%), Positives = 87/181 (48%), Gaps = 18/181 (9%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L+ AF  + E   A V+         FCAG DL E R+    E   +       F  ++ 
Sbjct: 34  LRAAFARLPEGVRAVVL---HGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQY 90

Query: 65  LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
             +P IA + GA +GGGLE+A A  +R+  E+    LPE    I  G             
Sbjct: 91  GRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVG------------- 137

Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 184
              GG+ R+PRL+G +   D++ TGR    ++   LGL  Y VPAG+A  KA+E+A+ I 
Sbjct: 138 --GGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIA 195

Query: 185 Q 185
           Q
Sbjct: 196 Q 196

Length = 255

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score =  107 bits (269), Expect = 7e-29
 Identities = 61/182 (33%), Positives = 85/182 (46%), Gaps = 24/182 (13%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L+  F+  + D    V ++  +  K F AG DLKE+                S F  L +
Sbjct: 36  LEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKR------GWPESGFGGLTS 89

Query: 65  ---LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
              L  P IA ++G A+GGG E+ALACDL +  E A   LPE  + +             
Sbjct: 90  RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAAL---------- 139

Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 181
                AGG  RLPR +G   A  +I TGR+V+ ++ + LG VN  VPAG+    A   A 
Sbjct: 140 -----AGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWAD 194

Query: 182 EI 183
           +I
Sbjct: 195 DI 196

Length = 259

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score =  107 bits (269), Expect = 8e-29
 Identities = 69/196 (35%), Positives = 91/196 (46%), Gaps = 48/196 (24%)

Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK----ERRQ---------MSPSEIH 49
             L  AF     D +A+V ++       FCAGADLK     R           M PS + 
Sbjct: 33  AALADAFRAFDADDAASVAVL-WGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRM- 90

Query: 50  FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLA 107
                          L  P IA + G A+ GGLE+AL CDLR+  E A+ G+     G+ 
Sbjct: 91  --------------RLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVP 136

Query: 108 IIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 167
           +I G                 GT RLPRL+G S A D+I TGR V   +A+++GL N  V
Sbjct: 137 LIDG-----------------GTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVV 179

Query: 168 PAGQAQLKALEIAQEI 183
           P GQA+  A E+A E+
Sbjct: 180 PKGQARAAAEELAAEL 195

Length = 254

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  111 bits (279), Expect = 1e-28
 Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 34/168 (20%)

Query: 12  ISEDSSANVVMIRSSVPKVFCAGADLK---------ERRQMSPSEIHFYVNTLRSTFSFL 62
           +  D S   +++ S  P  F AGAD+          E + ++           +  F+ L
Sbjct: 41  LKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQG--------QVLFAEL 92

Query: 63  EALPIPTIAVIDGAALGGGLEMALACDLRICGE--AALLGLPETGLAIIPGCSDRSLSHV 120
           EALPIP +A I GA LGGGLE+ALAC  R+C +    +LGLPE  L ++PG         
Sbjct: 93  EALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPG--------- 143

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
                 +GGTQRLPRL+G S A D+I TG+++  K A+ LGLV+  VP
Sbjct: 144 ------SGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP 185

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  111 bits (278), Expect = 2e-28
 Identities = 68/190 (35%), Positives = 98/190 (51%), Gaps = 20/190 (10%)

Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRST 58
           L  L  A + I   SS   V++ S     F  GAD+ E   +     +E+  ++    S 
Sbjct: 36  LASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSI 94

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
           F+ LE LP+PT+A I+G ALGGG E  LA D RI  + A +GLPET L I+PG       
Sbjct: 95  FNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPG------- 147

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                    GGT RLPR++G   A + I +G++   +DA+ +G V+  V A +    AL+
Sbjct: 148 --------FGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQ 199

Query: 179 -IAQEINQKV 187
            +   IN K+
Sbjct: 200 LLKDAINGKL 209

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  106 bits (266), Expect = 2e-28
 Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 20/184 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTF 59
           ++  L  A      D     ++I  S  K F AGAD+KE   M+  S +  Y     + +
Sbjct: 32  LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKE---MADLSFMDVYKGDYITNW 87

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             +  +  P IA + G ALGGG E+A+ CD+ I  + A  G PE  L ++PG        
Sbjct: 88  EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPG-------- 139

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                   GG+QRL R VGK+ A D+  TGR +   +A   GLV+  VPA +   +AL  
Sbjct: 140 -------MGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAA 192

Query: 180 AQEI 183
           A  I
Sbjct: 193 ATTI 196

Length = 257

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score =  106 bits (265), Expect = 2e-28
 Identities = 68/187 (36%), Positives = 98/187 (52%), Gaps = 20/187 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLR-STF 59
           +L  L +  E  + D+S  V +I  +  + F AGADL E   M+  ++   +N  R   +
Sbjct: 30  LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNE---MAEKDLAATLNDPRPQLW 85

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             L+A   P IA ++G ALG G E+AL CD+ I GE A  GLPE  L I+PG        
Sbjct: 86  QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPG-------- 137

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                  AGGTQRL R VGKS+A  ++ TG  ++ + A   GLV+   P      +AL++
Sbjct: 138 -------AGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQL 190

Query: 180 AQEINQK 186
           A +I + 
Sbjct: 191 ASKIARH 197

Length = 255

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score =  104 bits (262), Expect = 1e-27
 Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 15/182 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF-YVNTLRSTF 59
           M  GL    E I+ D S   V++R +  K F AG D+ + R  S +E    Y   +    
Sbjct: 36  MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVL 95

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             LE L +PTIA I GA +GGG  +A ACDLRI   +A  G P   +A       R+L +
Sbjct: 96  GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFP---IA-------RTLGN 145

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
            +  S+ A    RL  L+G +  KD++FT R +  ++A++ GLVN  V       +A  +
Sbjct: 146 CLSMSNLA----RLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADAL 201

Query: 180 AQ 181
           A+
Sbjct: 202 AE 203

Length = 262

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score =  101 bits (253), Expect = 1e-26
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 16/170 (9%)

Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF 61
           +  L  A   ++ D    V+++R +  K F  GAD+KE   +  +    +++ LR     
Sbjct: 36  ILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDA 95

Query: 62  LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           +   P+P IA I G  LGGGLE+A ACDLRI    A  G+PE  +  IP     S+ H  
Sbjct: 96  VRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVG-IP-----SVIHAA 149

Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 171
           L          LPRL+G +  + ++ TG  +    A++ GLV+  VP  +
Sbjct: 150 L----------LPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAE 189

Length = 256

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 97.1 bits (242), Expect = 8e-25
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL 62
             +   F    +D    V +I  +  K F AG DLK   +    +  F      +  + +
Sbjct: 32  FAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF-AGLTEI 90

Query: 63  EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVIL 122
             L  P IA ++G A GGG E+ALA D  +C + A   LPE  L I+P            
Sbjct: 91  FDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPD----------- 139

Query: 123 ASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 182
               +GG  RLP+ +  ++A +++ TGR++  ++A+  G+VN  VP  +   +A E+AQ+
Sbjct: 140 ----SGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQ 195

Query: 183 I 183
           +
Sbjct: 196 L 196

Length = 261

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 96.2 bits (240), Expect = 1e-24
 Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 22/197 (11%)

Query: 3   RGLKHA-FETISE-DSSANV-VMIRSSVPKVFCAGADLKE-RRQMSPSEIHFYVNTLRST 58
             L+ A F  ++E D+  +V V++ +     FCAG DLKE     S          L + 
Sbjct: 30  AALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQD---ALPNP 86

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
                A+  P I  I+GAA+ GGLE+ALACD+ I  E A        + I+PG       
Sbjct: 87  SPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPG------- 139

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                    G + RLP+ VG   A+ +  TG  +   DA+  GLV   VP  +   +A  
Sbjct: 140 --------WGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARR 191

Query: 179 IAQEINQKVQSVFRILL 195
           +A  I     +  R L 
Sbjct: 192 LAASIAGNNPAAVRALK 208

Length = 258

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 94.4 bits (235), Expect = 8e-24
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 17/185 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK--ERRQMSPSEIHFYVNTLRST 58
           M   L  A     +D +  VV++  +  K F +GAD+   E  +     +  Y   + + 
Sbjct: 39  MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAA 98

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
            + L     PTIA I G  +GGG+ +ALACD+RI  E +  G+P   L +          
Sbjct: 99  QAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGL---------- 148

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                     G + L  LVG S AKD+ +T R+    +A+ +GLV+    A   +    +
Sbjct: 149 -----GYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALAD 203

Query: 179 IAQEI 183
            A  I
Sbjct: 204 YAATI 208

Length = 269

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 94.0 bits (234), Expect = 1e-23
 Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 37/206 (17%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPK----VFCAGADLKERRQMSPSEIHFYVNTLR 56
           MLR +  A++ +  D       IRS +       FCAG DLK   +  P +         
Sbjct: 33  MLRIMVDAWDRVDNDPD-----IRSCILTGAGGAFCAGMDLKAATKKPPGD---SFKDGS 84

Query: 57  STFSFLEAL------PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 110
              S ++AL        P IA ++G A+ GG E+    D+R+ GE+A  G+ E   ++ P
Sbjct: 85  YDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFP 144

Query: 111 GCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170
                            G   RL R +  +VA D++ TGR ++  +A  +GL+ + VP G
Sbjct: 145 ---------------MGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDG 189

Query: 171 QAQLKALEIAQEINQK----VQSVFR 192
           QA  KALE+A+ IN      VQ++ R
Sbjct: 190 QALDKALELAELINANGPLAVQAILR 215

Length = 263

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 92.5 bits (230), Expect = 5e-23
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 42/201 (20%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNT------ 54
           M   +  A +    D +  V+++  +  + FCAGAD+ E + + PS+     +       
Sbjct: 34  MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGN 92

Query: 55  ----LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALL-------GL-P 102
                ++ + FL AL  P IA I+GA  G GL  AL CD+R   + A         GL  
Sbjct: 93  RRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIA 152

Query: 103 ETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGL 162
           E G++ I                       LPRLVG + A D++ + R    ++A+ LGL
Sbjct: 153 EHGISWI-----------------------LPRLVGHANALDLLLSARTFYAEEALRLGL 189

Query: 163 VNYYVPAGQAQLKALEIAQEI 183
           VN  VP  +   + L  A+++
Sbjct: 190 VNRVVPPDELMERTLAYAEDL 210

Length = 272

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 91.3 bits (227), Expect = 1e-22
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 21/188 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRST 58
           +   L   F+ ISE     VV + +   KVFCAGADLK R  +   P ++  +    R  
Sbjct: 31  LRDELIAVFDEISERPDVRVV-VLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTREC 89

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
           F  +     P IA ++G ALG GL +  +CD+ +  E A+ GLPE  + +          
Sbjct: 90  FHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGL---------- 139

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                   AGG +   RL G S+ + ++ TG +V   +    G++   +P  +   +A+E
Sbjct: 140 --------AGGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAME 191

Query: 179 IAQEINQK 186
           IA+EI  K
Sbjct: 192 IAREIASK 199

Length = 257

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 88.9 bits (221), Expect = 8e-22
 Identities = 55/158 (34%), Positives = 70/158 (44%), Gaps = 29/158 (18%)

Query: 31  FCAGADLKE----RRQMSPSEIHFYVNTLRSTFSFLEALPI-PTIAVIDGAALGGGLEMA 85
           FCAG DLK      R   P          R      E  P  P IA ++G AL GG E+A
Sbjct: 60  FCAGMDLKAFARGERPSIPG---------RGFGGLTERPPRKPLIAAVEGYALAGGFELA 110

Query: 86  LACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDI 145
           LACDL +    A  GLPE    ++                  GG  RLPR +   +A ++
Sbjct: 111 LACDLIVAARDAKFGLPEVKRGLVAA---------------GGGLLRLPRRIPYHIAMEL 155

Query: 146 IFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
             TG  ++ + A  LGLVN     GQA   ALE+A+ I
Sbjct: 156 ALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERI 193

Length = 254

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 86.4 bits (214), Expect = 3e-21
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 15/139 (10%)

Query: 29  KVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC 88
           ++F AG D+ E R +S  E        +     + A+P PT+A I G ALG GL +ALA 
Sbjct: 62  EIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAA 121

Query: 89  DLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFT 148
           D R+ G+    G  E    + P                  G  RL R  G S AK+++F+
Sbjct: 122 DWRVSGDNVKFGATEILAGLAP---------------SGDGMARLTRAAGPSRAKELVFS 166

Query: 149 GRKVSGKDAMSLGLVNYYV 167
           GR    ++A++LGL++  V
Sbjct: 167 GRFFDAEEALALGLIDEMV 185

Length = 222

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 86.7 bits (215), Expect = 6e-21
 Identities = 60/179 (33%), Positives = 84/179 (46%), Gaps = 25/179 (13%)

Query: 12  ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-------EIHFYVNTLRSTFSFLEA 64
           I  D S   V++  +  + F AGAD+ E    S S        +  +V   ++  + LEA
Sbjct: 42  IEVDESVRAVILTGAGDRAFSAGADIHE---FSASVAAGADVALRDFVRRGQAMTARLEA 98

Query: 65  LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
            P P IA ++G A GGG E+  A  L I  E AL   PE  L + P              
Sbjct: 99  FPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPP-------------- 144

Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
              GGTQRLPRL G+  A +++ TG   S + A+ +GLVN  VP  +    A  +A+ I
Sbjct: 145 -TFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRI 202

Length = 260

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 88.7 bits (220), Expect = 8e-21
 Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 39/201 (19%)

Query: 12  ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS-----TFSFLEALP 66
           +  + +    ++ S  P  F AGAD+    QM  +       T  S      F  +E   
Sbjct: 53  LWTNEAIKSAVLISGKPGSFVAGADI----QMIAACKTAQEVTQLSQEGQEMFERIEKSQ 108

Query: 67  IPTIAVIDGAALGGGLEMALACDLRIC--GEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
            P +A I G+ LGGGLE+ALAC  RI       LLGLPE  L ++PG             
Sbjct: 109 KPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPG------------- 155

Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV--------PAGQAQLKA 176
             AGGTQRLP+L G   A D++ TG+K+    A  +G+V+  V        PA +  ++ 
Sbjct: 156 --AGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEY 213

Query: 177 LE-----IAQEINQKVQSVFR 192
           LE      AQ +     S+ R
Sbjct: 214 LEEVAVKFAQGLANGKLSINR 234

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 23/183 (12%)

Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ------MSPSEIHF-YVNTLRSTFS 60
           A   I+ D S   V I +     F +G ++K+ R        SP++I   Y + ++    
Sbjct: 39  ACAAINADRSVRAV-ILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPL 97

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L  L +P IA ++G A+G G ++A  CD+RI  E A        L +IPG         
Sbjct: 98  ALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPG--------- 148

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  GG   LPR++G + A ++ FTG  +    A+  GLV+  VPA Q    A  +A
Sbjct: 149 ------DGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALA 202

Query: 181 QEI 183
           + I
Sbjct: 203 ERI 205

Length = 266

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 84.9 bits (211), Expect = 3e-20
 Identities = 58/200 (29%), Positives = 86/200 (43%), Gaps = 39/200 (19%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-HFYVNTLRSTF 59
           M   L    + + +D     V I S     FCAG D+K       + +   +     +  
Sbjct: 31  MFEELIATIKRLKKDRGIRAV-ILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNAN 89

Query: 60  SFLEA------LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAI----- 108
                      LP+P IA ++G   GGGL++AL  D+RI   AA    P+T L+I     
Sbjct: 90  LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRI---AA----PDTKLSIMEAKW 142

Query: 109 --IPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 166
             +P   D              GT  L  LV K VA+++ +T R  S ++A+ LGLV + 
Sbjct: 143 GLVP---D------------MAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187

Query: 167 VPAGQAQLKALEIAQEINQK 186
                A   AL +A+EI Q+
Sbjct: 188 SDDPLA--AALALAREIAQR 205

Length = 262

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 83.9 bits (208), Expect = 8e-20
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 28/195 (14%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL-----------KERRQMSPSEIH 49
               L   F  +  D     V++  S  K F  G DL           K+      +++ 
Sbjct: 34  FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLR 92

Query: 50  FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 109
             +  L++  + +     P IA + G  +GGG+++  ACD+R     A   + E  L + 
Sbjct: 93  REILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGM- 151

Query: 110 PGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169
                         +D  G  QRLPR++G    +++  TGR +   +A  +GLVN     
Sbjct: 152 -------------VAD-VGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDD 197

Query: 170 GQAQLK-ALEIAQEI 183
             A L  A   A+EI
Sbjct: 198 ADALLAAAHATAREI 212

Length = 272

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 19/181 (10%)

Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLK---ERRQMSPSEIHFYVNTLRSTFSFLEA 64
           A  T   D S   V++ +     FCAG +L    E R   PS     ++ L      + A
Sbjct: 38  ALNTAERDPSIRAVVL-TGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRA 96

Query: 65  LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
            P P IA ++GAA G G  +ALACDL +    A   +              +   V L  
Sbjct: 97  FPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVM--------------AYVKVGLTP 142

Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 184
           D  GG+  L R + + +A +++  G+ +S +   +LG+VN     GQA  +AL +A ++ 
Sbjct: 143 D-GGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLA 201

Query: 185 Q 185
            
Sbjct: 202 A 202

Length = 260

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 81.7 bits (202), Expect = 4e-19
 Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 25/191 (13%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMSPSEIHFYVN-TLRST 58
           ML GL  A + I +  +    ++ +   + FC GA+L+ R      S+        L + 
Sbjct: 32  MLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETA 91

Query: 59  F----SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGC 112
           +      L  LP P +  ++G A G G+  AL  DL +C  +A  L      GL  +P  
Sbjct: 92  YHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGL--VPDG 149

Query: 113 SDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 172
                          G T  LPRLVGK+ A ++   G K+  + A+  GLVN  V   + 
Sbjct: 150 ---------------GSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAEL 194

Query: 173 QLKALEIAQEI 183
             +A+++A E+
Sbjct: 195 MAEAMKLAHEL 205

Length = 266

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 80.8 bits (200), Expect = 8e-19
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 21/179 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMSPSEIHFYVNTLRSTF 59
           ML+ L  A + +  +SSA++V++R +  + F AG D+K        S+    +NT+    
Sbjct: 34  MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIV 91

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             L  +P  TI+ I G A G GL +AL  D  I   +A L +   G+ +IP         
Sbjct: 92  VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPD-------- 143

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV---PAGQAQLK 175
                   GG   L + VG++ AK II+ G+K+S  +A+ LGL++  +       A+ K
Sbjct: 144 -------GGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGDFQTAAKQK 195

Length = 260

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 16/163 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M   L+ A      D   + +++ +   K FCAGADL              +  +   F 
Sbjct: 31  MSAQLRAAVAAAEADPDVHALVV-TGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFL 89

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            + + P+PTIA ++GAA+G GL +ALA D+RI G  AL       L + PG         
Sbjct: 90  AVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPG--------- 140

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 163
                  G T  L R VG  VA+  +  G +   + A+  GL 
Sbjct: 141 ------GGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLA 177

Length = 249

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 54/205 (26%), Positives = 81/205 (39%), Gaps = 43/205 (20%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL---------KERRQMSPSEIHFY 51
           M R L  AF+    D +   V++  +  + FCAGADL            R    ++    
Sbjct: 32  MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDR 90

Query: 52  VN-------------TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAAL 98
            +             TLR     +     P IA ++G A+G G  M LA D+R+   AA 
Sbjct: 91  ADPSDDGVRDGGGRVTLR-----IFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAAR 145

Query: 99  LGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 158
            G       I+P                A  +  LPRLVG   A + +++GR    ++A+
Sbjct: 146 FGFVFGRRGIVP---------------EAASSWFLPRLVGLQTALEWVYSGRVFDAQEAL 190

Query: 159 SLGLVNYYVPAGQAQLKALEIAQEI 183
             GLV    P  +    A  +A+EI
Sbjct: 191 DGGLVRSVHPPDELLPAARALAREI 215

Length = 296

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 30/200 (15%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER----RQMSPSEIHFYVNTLR 56
           +++ L  A     ED    VV++  +  K FC+G D K R               V  ++
Sbjct: 35  IIQALDDA----REDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQ 90

Query: 57  STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLAIIPGCSD 114
                    P P IA+++G A+GGG  + + CDL I  E A  G   P+ G         
Sbjct: 91  RQIRTC---PKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKVG--------- 138

Query: 115 RSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 174
                   + D   G+  + R+VG+  A++I F  R+   K A+ +GLVN  VP    + 
Sbjct: 139 --------SFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEK 190

Query: 175 KALEIAQEINQKVQSVFRIL 194
           + +   +EI QK     R+L
Sbjct: 191 ETVRWCREILQKSPMAIRML 210

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 25/170 (14%)

Query: 13  SEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAV 72
           + D SA  +++      VFCAGADL     +   +     + L      ++A P+P IA 
Sbjct: 39  AVDESARAIVLTGQGT-VFCAGADLSG--DVYADDFP---DALIEMLHAIDAAPVPVIAA 92

Query: 73  IDGAALGGGLEMALACDLRICGEAALLGLP--ETGLAIIPGCSDRSLSHVILASDRAGGT 130
           I+G A+G GL++A+ACDLR+    A    P  + G+A+     D                
Sbjct: 93  INGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIAL-----DNWTIR----------- 136

Query: 131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
            RL  LVG   A+ ++    K++ + A++ G+ N       AQ  A EIA
Sbjct: 137 -RLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIA 185

Length = 243

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 20/189 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRS 57
           ++  L  AF  +  D S   V++ +   K FCAGADL   ++M   S  E       L  
Sbjct: 32  VIAELTAAFRALDADDSVRAVVL-AGAGKAFCAGADLNWMKKMAGYSDDENRADARRLAD 90

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
               +   P P IA + G A  GG+ +  ACD+ +  + A+  L E  L +IP       
Sbjct: 91  MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPA---TIS 147

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
            +VI             R +G+  A+    T  +    +A+ LGLV+  VPA     K  
Sbjct: 148 PYVI-------------RAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVD 194

Query: 178 EIAQEINQK 186
           E+   +   
Sbjct: 195 ELLAALVAN 203

Length = 262

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 76.2 bits (188), Expect = 6e-17
 Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE--RRQMSPSEIHFYVNTLRST 58
           M+  L    + +  D  A V+++  +    + AG DLKE  R   +  EI        + 
Sbjct: 40  MIDVL----DALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRREAY 94

Query: 59  --FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS 116
             +  L     PTIA+++G   GGG    +ACDL I  + A  GL E    I PG     
Sbjct: 95  GWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPG----- 149

Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 176
                      G ++ +   VG   A   I TG   +G+ A  +GLVN  VP  Q + + 
Sbjct: 150 ----------GGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRART 199

Query: 177 LEIAQEINQK 186
            E+A ++ +K
Sbjct: 200 RELAAKLLEK 209

Length = 275

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 75.7 bits (186), Expect = 1e-16
 Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 27/164 (16%)

Query: 13  SEDSSANV-VMIRSSVPKVFCAGADLK-----------ERRQMSPSEIHFYVNTLRSTFS 60
           S D + NV V+I S     FC+G DLK             R  S   +   +  L+   +
Sbjct: 46  SLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAIT 105

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +E    P IA I GA +GGG+++  ACD+R C E A   + E  LAI            
Sbjct: 106 AIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITAD--------- 156

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 164
                  G  QRLP +VG   A ++  TGR+ SG +A  LGLV+
Sbjct: 157 ------LGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194

Length = 275

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 19/192 (9%)

Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL 62
             L  AF+TI++D    VV++    P  F  G   +    +   +  F    L S    L
Sbjct: 35  DQLHEAFDTIAQDPRYKVVILTG-YPNYFATGGTQEGLLSLQTGKGTFTEANLYS--LAL 91

Query: 63  EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVIL 122
              PIP IA + G A+GGGL + L  D+ +    ++           PG           
Sbjct: 92  N-CPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPG----------- 139

Query: 123 ASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 182
                G T  LP  +G ++ ++++ T R   G +    G+    +P  +   KALE+A+ 
Sbjct: 140 ----MGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARS 195

Query: 183 INQKVQSVFRIL 194
           + +K +    +L
Sbjct: 196 LAEKPRHSLVLL 207

Length = 249

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 73.7 bits (181), Expect = 5e-16
 Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 38/194 (19%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF--- 61
           LK A   +S D+S  VV++ +   + F +GAD K     S   +       R T++    
Sbjct: 42  LKEALAEVSYDNSVRVVVL-TGAGRGFSSGADHK-----SAGVVPHVEGLTRPTYALRSM 95

Query: 62  ---------LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALL---GLPETGLAII 109
                    L  L  P IA ++G A+GGGL +ALA D+R+   +A     G+   GL   
Sbjct: 96  ELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGI-NNGLT-- 152

Query: 110 PGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169
              S+  LS++            LPR +G S A +I+ TGR V  ++A  +GLV+  VP 
Sbjct: 153 --ASELGLSYL------------LPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPD 198

Query: 170 GQAQLKALEIAQEI 183
            Q       IA  +
Sbjct: 199 EQLLDTCYAIAARM 212

Length = 276

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 73.1 bits (180), Expect = 9e-16
 Identities = 54/210 (25%), Positives = 81/210 (38%), Gaps = 50/210 (23%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE---RRQMSPS----------- 46
           ML  L  AF     D +  V+++  +    F AG DL      R   P            
Sbjct: 32  MLYELDAAFRRAEADDAVRVIVLAGAGKH-FSAGHDLGSGTPGRDRDPGPDQHPTLWWDG 90

Query: 47  ------------EIHFYV-NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC 93
                       E   Y+    R        LP PTIA + GA + GGL +A  CDL + 
Sbjct: 91  ATKPGVEQRYAREWEVYLGMCRR-----WRDLPKPTIAQVQGACIAGGLMLAWVCDLIVA 145

Query: 94  GEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS 153
            + A    P   + I         +H              P  +G   AK+++FTG +++
Sbjct: 146 SDDAFFSDPVVRMGI---PGVEYFAH--------------PWELGPRKAKELLFTGDRLT 188

Query: 154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
             +A  LG+VN  VP  + + + LE+A+ I
Sbjct: 189 ADEAHRLGMVNRVVPRDELEAETLELARRI 218

Length = 288

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 32/194 (16%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSPSEIHFYVNTLRSTF 59
           ++  L  A   ++      VV++R+    KV+ AG D+ E        +  Y + LR   
Sbjct: 32  LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLS-YDDPLRQIL 89

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRI-CGEA------ALLGLPETGLAIIPGC 112
             ++  P P IA+++G+  GG  E+ ++CDL I    +      A LG+P          
Sbjct: 90  RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYN-------- 141

Query: 113 SDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 172
                           G        G  + K++ FT   ++ + A+++G++N+ V   + 
Sbjct: 142 --------------LSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEEL 187

Query: 173 QLKALEIAQEINQK 186
           +   L++A  I++K
Sbjct: 188 EDFTLQMAHHISEK 201

Length = 261

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 30/200 (15%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML  L+ A + I+ D S  VV++ ++  K FCAG DLKE R  +    +F     R+ F+
Sbjct: 39  MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRA-ARGLAYF-----RALFA 91

Query: 61  F-------LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCS 113
                   + ALP P IA + G A   G ++  +CDL +  + A   +P  G+ I   CS
Sbjct: 92  RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVP--GVNIGLFCS 149

Query: 114 DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 173
              ++              L R V +  A +++ TG  +    A   GLVN  VPA    
Sbjct: 150 TPMVA--------------LSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALD 195

Query: 174 LKALEIAQEINQKVQSVFRI 193
                +A  I  K  +  RI
Sbjct: 196 AAVARLAAVIAAKSPAAVRI 215

Length = 266

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 71.7 bits (176), Expect = 3e-15
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 21/184 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS-TF 59
           M+  L  AF+ + ED S  V+++  S    FC+G DL      +       V  + +   
Sbjct: 38  MMVELAAAFKRLDEDDSVKVIILTGSGR-AFCSGVDLTA----AEEVFKGDVKDVETDPV 92

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
           + +E    P I  I+G A+  G E+ALACD+ +    A          I P         
Sbjct: 93  AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSW------- 145

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                   G +Q+L R++G + A+++  T   ++ + A   GLVN+ V   +   KA E+
Sbjct: 146 --------GLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREV 197

Query: 180 AQEI 183
           A+ I
Sbjct: 198 AEAI 201

Length = 265

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 28/194 (14%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L  A      D    VV++R+   + F AG D+KE +           N  R  F+   A
Sbjct: 33  LADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDAN--RGCFAAFRA 89

Query: 65  L---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           +    +P IA + G  LGGG+ +    D+ +  + A  GLPE                  
Sbjct: 90  VYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEV----------------- 132

Query: 122 LASDRA--GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
              DR   G    L RLV + + + + FT   ++  +    G V   VP  Q    ALE+
Sbjct: 133 ---DRGALGAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEV 189

Query: 180 AQEINQKVQSVFRI 193
           A++I  K   V R 
Sbjct: 190 ARKIAAKDTRVIRA 203

Length = 249

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 70.9 bits (174), Expect = 6e-15
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 25/197 (12%)

Query: 5   LKHAFETISEDSSANVVMIRSSVP--KVFCAGADLKERRQ----MSPSEIHFYVNTLRST 58
           +  AF    +D +  V+++  +    K FC+G D K R      +    I   +N L   
Sbjct: 51  MIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIP-RLNVLDLQ 109

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
              +  +P P IA++ G A+GGG  + + CDL I  + A+ G  +TG  +          
Sbjct: 110 -RLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFG--QTGPKV---------- 156

Query: 119 HVILASDRAG-GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                S   G G+  L R+VG+  A++I F  R+   ++A+ +GLVN  VP    + + +
Sbjct: 157 ----GSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETV 212

Query: 178 EIAQEINQKVQSVFRIL 194
           + A+E+  K  +  R+L
Sbjct: 213 QWAREMLAKSPTALRML 229

Length = 282

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 34/200 (17%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ---MSPSEIHFYVNTL------ 55
           +  AF    +D +  V+++  +  K FC+G D K R     +    +   +N L      
Sbjct: 45  MIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVP-RLNVLDLQRLI 103

Query: 56  RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDR 115
           R+        P P IA++ G A+GGG  + L CDL I  + A+ G  +TG  +  G  D 
Sbjct: 104 RT-------CPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFG--QTGPKV--GSFD- 151

Query: 116 SLSHVILASDRAG-GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 174
                       G G   L R+VG+  A++I F  R+   ++A+ +GLVN  VP    + 
Sbjct: 152 -----------GGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEK 200

Query: 175 KALEIAQEINQKVQSVFRIL 194
           + +   +E+ Q      R L
Sbjct: 201 ETVRWCREMLQNSPMALRCL 220

Length = 273

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 28/170 (16%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR-------QMSPSEIHFYVN 53
           M   L+ A E +  D +  +++  +   + FCAG DL ER         +  +   FY  
Sbjct: 27  MHLELREALERVERDDARALML--TGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNP 84

Query: 54  TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCS 113
            +R     L ALP+P +  ++G A G G  +ALACD+ +  E+A        + +IP   
Sbjct: 85  LVRR----LRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDS- 139

Query: 114 DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 163
                         GGT  LPRLVG++ A  +   G K+  + A S GL+
Sbjct: 140 --------------GGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLI 175

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 24/160 (15%)

Query: 31  FCAGADLKE----RRQMSPSEIHFYVNTLRSTFSFLEAL---PIPTIAVIDGAALGGGLE 83
           FC+G D+ E      +M   E+  +    R T   ++A+   P P IA +DG   G G  
Sbjct: 74  FCSGGDVHEIIGPLTKMDMPELLAFT---RMTGDLVKAMRACPQPIIAAVDGVCAGAGAI 130

Query: 84  MALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAK 143
           +A+A DLR       LG P    A +        + V LA    G    LPR++G+  A 
Sbjct: 131 LAMASDLR-------LGTPSAKTAFL-------FTRVGLAGADMGACALLPRIIGQGRAS 176

Query: 144 DIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
           ++++TGR +S ++    G  N  V   +   +A  +A+ +
Sbjct: 177 ELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRL 216

Length = 277

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 68.4 bits (167), Expect = 4e-14
 Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 24/186 (12%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGAD--LKERRQMSPSEIHFYVNTLRSTFSFL 62
           L HA +    D    V+++  +  K FC G D    +        I   +  L S    +
Sbjct: 34  LIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSA---I 90

Query: 63  EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLAIIPGCSDRSLSHV 120
             +P P IA + G A+GGG  +   CDL I  E A  G   P+ G ++ PG         
Sbjct: 91  RDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVG-SVDPGY-------- 141

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                   GT  L R+VG+  A++I +  R+ + ++A+++GLVN  VP  Q   +  +  
Sbjct: 142 --------GTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWC 193

Query: 181 QEINQK 186
            EI +K
Sbjct: 194 DEIVEK 199

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 68.0 bits (167), Expect = 6e-14
 Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 45/194 (23%)

Query: 1   MLRGLKHAFETISEDSSANVVMIR-----SSVPKVFCAGADL---------KERRQMSPS 46
           +L  + +    I +    + + +      S VP VF  G DL          +R  +   
Sbjct: 44  LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLA- 102

Query: 47  EIHFY-------VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALL 99
               Y       V+     F         +IA++ G ALGGG E AL+    I    A +
Sbjct: 103 ----YARACVDGVHAFHRGF----GAGAISIALVQGDALGGGFEAALSHHTIIAERGAKM 154

Query: 100 GLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 159
           G PE    + PG                G    L R VG  +A+++I +G+  + ++   
Sbjct: 155 GFPEILFNLFPG---------------MGAYSFLARRVGPKLAEELILSGKLYTAEELHD 199

Query: 160 LGLVNYYVPAGQAQ 173
           +GLV+  V  GQ +
Sbjct: 200 MGLVDVLVEDGQGE 213

Length = 287

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 67.5 bits (166), Expect = 1e-13
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 38/184 (20%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE-----RRQMSPSEIHFY---- 51
           M+R +  A +   +D +   V+I  +  + FCAG D++      R     +   F+    
Sbjct: 31  MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEY 90

Query: 52  -VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 110
            +N L + +      P P IA++DG  +GGG+ ++     RI  E   + +PETG+   P
Sbjct: 91  RLNALIARY------PKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFP 144

Query: 111 GCSDRSLSHVILASDRAGGTQRLPRL---VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 167
              D             GGT  L R    +G  +A     TG ++S  DA+  GL +++V
Sbjct: 145 ---D------------VGGTYFLSRAPGALGTYLA----LTGARISAADALYAGLADHFV 185

Query: 168 PAGQ 171
           P+  
Sbjct: 186 PSAD 189

Length = 342

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 65.2 bits (159), Expect = 7e-13
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ--MSPSEIHFYVNTLRSTFSFL 62
           L+ AF    +DSS  V+++     K FC+G D   R +      +    +N L      +
Sbjct: 99  LQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQ-I 157

Query: 63  EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVIL 122
             LP P IA++ G A+GGG  + + CDL I  + A+ G  +TG  +              
Sbjct: 158 RRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFG--QTGPKV-------------- 201

Query: 123 ASDRAG-GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
            S  AG G+  + RLVG+  A+++ F  R  +  +A+ +GLVN  VP
Sbjct: 202 GSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVP 248

Length = 327

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 64.5 bits (158), Expect = 8e-13
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 31/172 (18%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---------HFY 51
           M R L+ A + + ED  A  +++ +   + FCAG DL +R  ++P             FY
Sbjct: 32  MHRELREALDQV-EDDGARALLL-TGAGRGFCAGQDLADRD-VTPGGAMPDLGESIETFY 88

Query: 52  VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG 111
              +R     L ALP+P IA ++G A G G  +ALACD+ +   +A              
Sbjct: 89  NPLVRR----LRALPLPVIAAVNGVAAGAGANLALACDIVLAARSA-------------- 130

Query: 112 CSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 163
              ++   + L  D +GGT  LPRLVG + A  +   G K+S + A   GL+
Sbjct: 131 SFIQAFVKIGLVPD-SGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLI 181

Length = 262

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK-ERRQM--SPSEIHFYVNTLRS 57
           M+  L  A   ++ D++  VV++ +   K FCAG DL   R QM    +        L  
Sbjct: 33  MIAELTTAARRLAADAAVRVVVL-TGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAM 91

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
               L  LP P I  I G A GGG+ +   CD+ I    A  GL ET L +IP     ++
Sbjct: 92  MLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPA----TI 147

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169
           S  ++A             +G++ A+ +  + R    ++A+ LGL++  VPA
Sbjct: 148 SPYVVAR------------MGEANARRVFMSARLFDAEEAVRLGLLSRVVPA 187

Length = 262

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 24/183 (13%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVN-----TL 55
           M+R L  A + +  D+S   +++R    + F AGADL   +Q   +++ +  N      L
Sbjct: 34  MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQ--SADLDYNTNLDDAREL 90

Query: 56  RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDR 115
                 L  L IPT+AV+ GAA GG L +   CD+ I  + A   L E  + + P     
Sbjct: 91  AELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPA---- 146

Query: 116 SLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 175
               VI        +  + + +G+  A+    T  +  G+ A  LGL+    PA + + +
Sbjct: 147 ----VI--------SPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELEAQ 194

Query: 176 ALE 178
              
Sbjct: 195 VEA 197

Length = 265

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 19/175 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPK-VFCAGADLKERRQMSPSEIHFYVNTLRSTF 59
           M R L  A   +  D +   V+  S + + VF AG D+ E      S    Y     +  
Sbjct: 39  MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAAR-YAEFWLTQT 97

Query: 60  SFLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS 116
           +FL  L    + T+  I GA   GG  ++L CD R+      +GL E  L I        
Sbjct: 98  TFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGI-------- 149

Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 171
                    +      + R++ + VA+ ++  GR V   +A  LGL++  VPA  
Sbjct: 150 ------PVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198

Length = 278

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 62.8 bits (152), Expect = 8e-12
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 26/182 (14%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE----RRQMSPSEIHFYVNTLRSTFS 60
           L+  ++   ED +   VM++ S  + FCAG D+      R++ SP  I  + ++L S   
Sbjct: 69  LQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIY 127

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L     P +A+++G  +GGG  +++    R+  +  +   PET +   P          
Sbjct: 128 LLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPD--------- 178

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY-----VPAGQAQLK 175
                 AG +  L  L G+ + + +  TG K+SG + ++ GL  +Y     +P  + QLK
Sbjct: 179 ------AGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLK 231

Query: 176 AL 177
            L
Sbjct: 232 KL 233

Length = 401

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 51/211 (24%), Positives = 73/211 (34%), Gaps = 50/211 (23%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK---ERRQMSPSEIHFY-----V 52
               L+ A E    D   +V+++ S   K FCAG DL    E          +      V
Sbjct: 38  TPLELRAAVERADLDPGVHVILV-SGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAV 96

Query: 53  NTL---------------RST--FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGE 95
           N L               R    F  L     PT+A + G  + GG ++AL CD  I  +
Sbjct: 97  NHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAAD 156

Query: 96  AALLGLPETGLAIIPGCSDRSLSHVILASDRAGG---TQRLPRLVGKSVAKDIIFTGRKV 152
            A +G P T                     R  G   T      +G   AK ++FTG  +
Sbjct: 157 DAKIGYPPT---------------------RVWGVPATGMWAYRLGPQRAKRLLFTGDCI 195

Query: 153 SGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
           +G  A   GL    VP  +   +   + + I
Sbjct: 196 TGAQAAEWGLAVEAVPPEELDERTERLVERI 226

Length = 302

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 58/200 (29%), Positives = 80/200 (40%), Gaps = 30/200 (15%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNT-----L 55
           M R L   +  +  D    VV+IR    K F AG DL    +M+     F V        
Sbjct: 40  MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADD---FEVRARVWREA 95

Query: 56  RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDR 115
           R     +     P ++ I G A+G GL  AL  D+ I  + A          II G    
Sbjct: 96  RDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDA---------RIIDG---- 142

Query: 116 SLSHVIL---ASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 172
              H  L   A D A      P L G + AK  +     VSG++A  +GLV+  V   + 
Sbjct: 143 ---HTRLGVAAGDHA--AIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDEL 197

Query: 173 QLKALEIAQEINQKVQSVFR 192
             KALE+A+ +    Q+  R
Sbjct: 198 LPKALEVAERLAAGSQTAIR 217

Length = 268

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 41/183 (22%)

Query: 31  FCAGADLKERR----QMSPSEIHFYVNTLRST-FSFLE------ALPIPTIAVIDGAALG 79
           FC+G D + R     Q +  +    V+  R+     LE       +P   IAV+ G A G
Sbjct: 89  FCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAG 148

Query: 80  GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI-------LASDRAG-GTQ 131
           GG  + + CDL +                       S  H         + S   G G+ 
Sbjct: 149 GGHSLHVVCDLTLA----------------------SREHARFKQTDADVGSFDGGYGSA 186

Query: 132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 191
            L R VG+  A++I F GR  S ++A  +G VN  VP  + + +ALE A+EIN K  +  
Sbjct: 187 YLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAM 246

Query: 192 RIL 194
           R+L
Sbjct: 247 RML 249

Length = 302

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 35/188 (18%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE----------RRQMSPSEIHF 50
           M+  L   F    ED S  +V+++    + FCAG D+            R   +     +
Sbjct: 37  MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEY 95

Query: 51  YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 110
            +N + +T+S  +      +++++G  +GGG  +++    RI  E  +  +PET L + P
Sbjct: 96  MLNYVMATYSKAQ------VSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFP 149

Query: 111 GCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170
              D   S+ +          RLP   G+ V      TG ++ G + ++ GL  ++VP+ 
Sbjct: 150 ---DVGASYFL---------SRLPGFFGEYVG----LTGARLDGAEMLACGLATHFVPS- 192

Query: 171 QAQLKALE 178
             +L ALE
Sbjct: 193 -TRLTALE 199

Length = 381

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 20/160 (12%)

Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKE-RRQMSPSEIHFYVN--TLRSTFSF-LE 63
           A     ED S   ++I +   KVF  G DL E +R +   ++   V    L +  SF ++
Sbjct: 37  ALRLAEEDPSVRFLLINA-NGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIK 95

Query: 64  ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILA 123
            LP P I  +DGA  G    MA+A D  I                I     ++   V LA
Sbjct: 96  QLPKPVIMCVDGAVAGAAANMAVAADFCIASTKT---------KFI-----QAFVGVGLA 141

Query: 124 SDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 163
            D AGG   L R +G + A  +  TG  ++ + A+  G V
Sbjct: 142 PD-AGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFV 180

Length = 255

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 20/164 (12%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M+  L  A     EDS+   V++ +  P  F  GA + E     P +    + +L     
Sbjct: 28  MIAALSAALGEHLEDSALRAVLLDAEGPH-FSFGASVAEHM---PDQCAAMLASLHKLVI 83

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +   P+P +  + G  LGGGLE+A A +L      A LG PE  L +            
Sbjct: 84  AMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFA---------- 133

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 164
                    +  LP  +G+  A+D++++GR + G +   +GL N
Sbjct: 134 ------PAASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLAN 171

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 15/116 (12%)

Query: 68  PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRA 127
           P +  + G  L  G+E+ LA D+ +  +       E    I+P                 
Sbjct: 94  PLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFG--------------- 138

Query: 128 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
           G T R P+  G   A   + TG +   ++A+ LGLV   VP G+   +A+E+A+ I
Sbjct: 139 GATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERI 194

Length = 255

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRS 57
           M++ +  AF   S D     V+  +   K FC G + KE  +    +P E   Y+     
Sbjct: 56  MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFND 115

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLAIIPGCSD 114
             S +     P I  ++G  +GGG E+ +A D  I  + A  G   P+ G A I G +D
Sbjct: 116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATD 174

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 23/171 (13%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLR 56
           M+  LK  +E+  E+     V+++ S  + FC+GAD+     +    +  E   +   L 
Sbjct: 70  MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLY 128

Query: 57  STFSFLEALPI-PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDR 115
             F +L+   + P +A++DG  +G G  +++    R+  +  +   PE  +   P   D 
Sbjct: 129 K-FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHP---DA 184

Query: 116 SLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 166
             S+ +          RLP  +G+ +A     TG+K++G + ++ GL  +Y
Sbjct: 185 GASYYL---------SRLPGYLGEYLA----LTGQKLNGVEMIACGLATHY 222

Length = 407

>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 36/178 (20%)

Query: 20  VVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALP-------IPTIAV 72
            V++ S+  +VFC+GA++     +  S   + VN  + T      +        +  IA 
Sbjct: 73  TVVVTSAKDRVFCSGANI---FMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAA 129

Query: 73  IDGAALGGGLEMALACD--LRICGEAALLGLPETG-LAIIPGCSDRSLSHVILASDRAGG 129
           ++G   GGG E+ALACD  + +   ++ + LPE   L ++PG                GG
Sbjct: 130 VNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPG---------------TGG 174

Query: 130 TQRLPRLVGK-SVAKDI--IF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 182
              L R+  K  V +D+  IF      V GK A+   LV+  V   +   K  E A E
Sbjct: 175 ---LTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAE 229

Length = 550

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 19/136 (13%)

Query: 31  FCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA---LPIPTIAVIDGAALGGGLEMALA 87
           FCAGADL E            V   R   + L A   LP P IA IDG    GG  +  A
Sbjct: 63  FCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGA 122

Query: 88  CDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIF 147
           CD+ + G  +   L E  + + P     +L               LPRL  ++ A+    
Sbjct: 123 CDIVVAGPESTFALTEARIGVAPAIISLTL---------------LPRLSPRAAAR-YYL 166

Query: 148 TGRKVSGKDAMSLGLV 163
           TG K    +A  +GLV
Sbjct: 167 TGEKFGAAEAARIGLV 182

Length = 260

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 41/180 (22%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L    E   +D S  +++I+    + F AG DLK           FY +   S  S LE 
Sbjct: 43  LAEFLEQWEKDDSVELIIIKG-AGRAFSAGGDLK----------MFY-DGRESDDSCLEV 90

Query: 65  LPI-------------PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG 111
           +                 +A++ G  +GGG  + +    R+  E  +   PE  +     
Sbjct: 91  VYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTD 150

Query: 112 CSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 171
           C     S+++          RLP  +G+ +A     TG +++GK+ ++ GL  ++VP+ +
Sbjct: 151 C---GFSYIL---------SRLPGHLGEYLA----LTGARLNGKEMVACGLATHFVPSEK 194

Length = 379

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 16  SSANVVMIRSSVPKVFCAGADLKE--RRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI 73
            +A +V++   +P+VFC GAD      +  +          L   +  L   P  TIA +
Sbjct: 45  HAATIVVLEG-LPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHV 103

Query: 74  DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRL 133
            G    GG+    A D+ I  E A   L E    +IP C                    L
Sbjct: 104 RGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-------------------L 144

Query: 134 P---RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 176
           P   R +G   A  +    + V+ + A S GLV+ Y       L+ 
Sbjct: 145 PFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDTLLRK 190

Length = 255

>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 38/185 (20%)

Query: 14  EDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHF--YVNTLR------STFSFLEA 64
           E      V++ S   +VFC+GA++      + + +++F  + N  R      S  S L+ 
Sbjct: 63  EHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122

Query: 65  LPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETG-LAIIPGCSDRSLSHVI 121
           L     A ++G   GGG E+ALACD  + +   ++ + LPE   L ++PG          
Sbjct: 123 L-----AAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG---------- 167

Query: 122 LASDRAGGTQRL--PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLK 175
                 GG  R+   R V +  A         V GK A    LV+  V   Q       +
Sbjct: 168 -----TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER 222

Query: 176 ALEIA 180
           A E+A
Sbjct: 223 AAELA 227

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 21/164 (12%)

Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLK--ERRQMSPSEIHFYVNTLRSTFSFL 62
           ++ A   +   ++   V+I ++  K F  G DL   +    +PS +H  V  LR   + L
Sbjct: 31  IRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADL 90

Query: 63  EALPIPTIAVIDGAALGGGLEMALACDLRIC-GEAALLGLPET--GLAIIPGCSDRSLSH 119
            +LP+PTIA + G A   G  +AL+ D  +   +  +L + E   GL  +P         
Sbjct: 91  ISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGL-PLP----DYFMA 145

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 163
           ++ A   +   +R           D++    K++ ++A+ +G+V
Sbjct: 146 LLRAKIGSPAARR-----------DVLLRAAKLTAEEAVEMGIV 178

Length = 239

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 47/189 (24%)

Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF-SFLEALP 66
             + I+ D    VV++     + FC GADL E    +P    F ++ LR TF   +  + 
Sbjct: 35  KLKQINADPKIRVVIVTGE-GRAFCVGADLSE---FAPD---FAID-LRETFYPIIREIR 86

Query: 67  IPT---IAVIDGAALGGGLEMALACDLRICGEAAL-------LGL-PETGLAIIPGCSDR 115
                 I+ I+G   G  + +AL+ D +              LGL  +TG+A        
Sbjct: 87  FSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYF------ 140

Query: 116 SLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 175
                            L +L G+    +I+  G + + ++A   GL+     +      
Sbjct: 141 -----------------LLKLTGQR-FYEILVLGGEFTAEEAERWGLLKI---SEDPLSD 179

Query: 176 ALEIAQEIN 184
           A E+A  I+
Sbjct: 180 AEEMANRIS 188

Length = 248

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 22/122 (18%)

Query: 66  PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL--AIIPGCSDRSLSHVILA 123
             P IA + G  +GG  + AL  D+ I  + A++G P + +  A + G     LS   LA
Sbjct: 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMWLYRLS---LA 168

Query: 124 SDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
                              K    TGR ++G  A    L+N  VP  + + +  E+A E+
Sbjct: 169 K-----------------VKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATEL 211

Query: 184 NQ 185
            +
Sbjct: 212 AR 213

Length = 298

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 18/136 (13%)

Query: 61  FLEALPI---PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
           FL AL     P ++ +DG A+G G  + L CDL      +L   P   LA++P       
Sbjct: 89  FLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVP------- 141

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                    AG +   PRL+G   A  ++  G   S + A   GL+   V     + + L
Sbjct: 142 --------EAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETL 193

Query: 178 EIAQEINQKVQSVFRI 193
           + A+E+  K     +I
Sbjct: 194 KAAEELAAKPPQALQI 209

Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PLN02600	251	enoyl-CoA hydratase	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PLN02921	327	naphthoate synthase	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	99.97
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.95
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.9
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.87
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.79
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.74
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.73
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.72
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.72
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.68
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.67
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.62
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.49
PRK10949	618	protease 4; Provisional	99.4
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.3
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	99.21
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	99.18
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	99.02
PRK11778	330	putative inner membrane peptidase; Provisional	98.98
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.92
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.91
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.87
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.83
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.82
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.78
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.76
PRK10949	618	protease 4; Provisional	98.76
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.72
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	98.7
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	98.69
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	98.67
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	98.65
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.59
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.56
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.48
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.43
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.39
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	98.37
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	98.33
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.31
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.31
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	98.28
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	98.11
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.85
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.84
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.82
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.81
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.79
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	97.5
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.46
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.43
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	97.37
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.01
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.68
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.08
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	95.98
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.14
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	93.51
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	90.66
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	88.4
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	88.35
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	87.01
KOG0540	536	consensus 3-Methylcrotonyl-CoA carboxylase, non-bi	86.1
PLN02522	608	ATP citrate (pro-S)-lyase	84.09
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	83.58
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	81.06
smart00250	38	PLEC Plectin repeat.	80.04

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=6.4e-45  Score=296.10  Aligned_cols=180  Identities=72%  Similarity=1.126  Sum_probs=167.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||.++++||+|.|++++...+......+...++.++.++.++||||||+|||+|+||
T Consensus        23 ~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  102 (251)
T PLN02600         23 MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGG  102 (251)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecch
Confidence            67899999999999999999999997678999999999875543333445566677888899999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       103 G~~lala~D~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~  167 (251)
T PLN02600        103 GLELALSCDLRICGEEAVFGLPETGLAIIPG---------------AGGTQRLPRLVGRSRAKELIFTGRRIGAREAASM  167 (251)
T ss_pred             hHHHHHhCCEEEeeCCCEEeCcccccCcCCC---------------chHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++|++++.+++.++|+++++.||.+++.+|
T Consensus       168 Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K  202 (251)
T PLN02600        168 GLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAK  202 (251)
T ss_pred             CCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-44  Score=295.79  Aligned_cols=180  Identities=36%  Similarity=0.534  Sum_probs=165.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.+++|+++|+|||+|.|+++||+|.|++++...+......+...+.+++.++.++||||||+|||+|+||
T Consensus        30 ~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  109 (258)
T PRK09076         30 SLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGG  109 (258)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecH
Confidence            57899999999999999999999998558999999999875433332333445567788899999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~  174 (258)
T PRK09076        110 GLECALACDIRIAEEQAQMALPEASVGLLPC---------------AGGTQNLPWLVGEGWAKRMILCGERVDAATALRI  174 (258)
T ss_pred             HHHHHHhCCEEEecCCCEeeCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.+++++++..+|.+++.+|
T Consensus       175 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  209 (258)
T PRK09076        175 GLVEEVVEKGEAREAALALAQKVANQSPSAVAACK  209 (258)
T ss_pred             CCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.3e-45  Score=295.91  Aligned_cols=179  Identities=30%  Similarity=0.525  Sum_probs=165.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.++.|+++|+|||||.++++||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus        35 ~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  114 (256)
T PRK06143         35 VILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGG  114 (256)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeeh
Confidence            57899999999999999999999998557999999999875544333445566778888999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|+ |+               .++++++++++|..++++++++|++++++||+++
T Consensus       115 G~~lalacD~~ia~~~a~f~~pe~~~G~-p~---------------~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~  178 (256)
T PRK06143        115 GLELAAACDLRIAAHDAQFGMPEVRVGI-PS---------------VIHAALLPRLIGWARTRWLLLTGETIDAAQALAW  178 (256)
T ss_pred             hHHHHHhCCEEEecCCCEEeCCccccCC-CC---------------ccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHC
Confidence            9999999999999999999999999998 77               7788999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       179 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  213 (256)
T PRK06143        179 GLVDRVVPLAELDAAVERLAASLAGCGPQALRQQK  213 (256)
T ss_pred             CCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999886

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.1e-44  Score=289.72  Aligned_cols=179  Identities=28%  Similarity=0.449  Sum_probs=165.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.+++++++.|+++|+||+||. |++||+|.|++++......+...+.+.+++++.++.++||||||+|||+|+||
T Consensus        35 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~Gg  113 (222)
T PRK05869         35 VYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGA  113 (222)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecH
Confidence            57899999999999999999999997 78999999999876543333333445567888999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|++.++++++|..++++++++|++++++||+++
T Consensus       114 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~  178 (222)
T PRK05869        114 GLTLALAADWRVSGDNVKFGATEILAGLAPS---------------GDGMARLTRAAGPSRAKELVFSGRFFDAEEALAL  178 (222)
T ss_pred             HHHHHHhCCEEEecCCCEEcCchhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHC
Confidence            9999999999999999999999999999999               8899999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++|++++.+++.++++++++.||.+++.+|
T Consensus       179 Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K  213 (222)
T PRK05869        179 GLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAK  213 (222)
T ss_pred             CCCCEeeCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999887

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-44  Score=295.22  Aligned_cols=180  Identities=33%  Similarity=0.512  Sum_probs=164.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+++|.++++.+++||++|+|||||.++++||+|.|++++....    ......+.+.+++++.++.++||||||+|||+
T Consensus        31 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~  110 (260)
T PRK05980         31 LIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGL  110 (260)
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence            67899999999999999999999998557999999999875421    11234455566778888999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++|
T Consensus       111 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e  175 (260)
T PRK05980        111 AFGGGCEITEAVHLAIASERALFAKPEIRLGMPPT---------------FGGTQRLPRLAGRKRALELLLTGDAFSAER  175 (260)
T ss_pred             EEhhhhHHhHhCCEEEecCCCEecCcccccCCCCC---------------chHhhHHHhhcCHHHHHHHHHcCCccCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       176 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  214 (260)
T PRK05980        176 ALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAIL  214 (260)
T ss_pred             HHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999998775

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-44  Score=294.13  Aligned_cols=180  Identities=49%  Similarity=0.802  Sum_probs=166.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++++++|+++|+|||||.++++||+|.|++++...+......+...+++++..+.++||||||+|||+|+||
T Consensus        32 ~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  111 (260)
T PRK07657         32 LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGG  111 (260)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeech
Confidence            57899999999999999999999998556999999999875433333445556677888899999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       112 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~  176 (260)
T PRK07657        112 GLELALACDFRIAAESASLGLTETTLAIIPG---------------AGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEI  176 (260)
T ss_pred             HHHHHHhCCEEEeeCCCEEcCchhccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++|++++.+++.+++++++..+|.+++.+|
T Consensus       177 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  211 (260)
T PRK07657        177 GLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAK  211 (260)
T ss_pred             CCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-44  Score=291.51  Aligned_cols=177  Identities=34%  Similarity=0.580  Sum_probs=162.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.++  +++|+|||||. |++||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus        30 ~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  106 (255)
T PRK08150         30 LIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGG  106 (255)
T ss_pred             HHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcH
Confidence            5789999999997  78999999998 68999999999886533322333445667788899999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~  171 (255)
T PRK08150        107 GLELASAAHIRVADESTYFALPEGQRGIFVG---------------GGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERL  171 (255)
T ss_pred             HHHHHHhCCEEEEeCCCEEeccccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++|++++.+++.++++++++.+|.+++.+|
T Consensus       172 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  206 (255)
T PRK08150        172 GLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVL  206 (255)
T ss_pred             CCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=7.5e-44  Score=291.20  Aligned_cols=180  Identities=37%  Similarity=0.598  Sum_probs=165.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.+++|+++|+|||+|.|+++||+|.|++++...+......+.....+++.++.++||||||+|||+|+||
T Consensus        32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  111 (260)
T PRK05809         32 TLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGG  111 (260)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecH
Confidence            57899999999999999999999998548999999999876543333333445566788899999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       112 G~~lal~cD~~va~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~  176 (260)
T PRK05809        112 GCELSMACDIRIASEKAKFGQPEVGLGITPG---------------FGGTQRLARIVGPGKAKELIYTGDMINAEEALRI  176 (260)
T ss_pred             HHHHHHhCCEEEeeCCCEEeCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.+++++++..||.+++.+|
T Consensus       177 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  211 (260)
T PRK05809        177 GLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCK  211 (260)
T ss_pred             CCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=5.8e-44  Score=291.27  Aligned_cols=179  Identities=27%  Similarity=0.399  Sum_probs=161.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.++.|+++|+|||||.++++||+|.|++++..... ....+...+.+++..+.++||||||+|||+|+||
T Consensus        30 ~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  108 (256)
T TIGR03210        30 TCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGG  108 (256)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chhHHHHHHHHHHHHHHhCCCCEEEEECCEEehh
Confidence            678999999999999999999999985589999999998743211 1111223456788889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               .++++++++++|..++++++++|++++++||+++
T Consensus       109 G~~lal~cD~~ia~~~a~f~~pe~~~G~~~~---------------~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~  173 (256)
T TIGR03210       109 GNVLVTICDLTIASEKAQFGQVGPKVGSVDP---------------GYGTALLARVVGEKKAREIWYLCRRYTAQEALAM  173 (256)
T ss_pred             hHHHHHhCCEEEEeCCCEEecccccccccCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHc
Confidence            9999999999999999999999999999887               7778999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       174 Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K  208 (256)
T TIGR03210       174 GLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAK  208 (256)
T ss_pred             CCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.1e-44  Score=291.65  Aligned_cols=180  Identities=33%  Similarity=0.501  Sum_probs=164.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.+++++++.|+++|+|||+|.++++||+|.|++++.... ......+...+.+++.++.++||||||+|||+|+|
T Consensus        36 ~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G  115 (262)
T PRK06144         36 MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVG  115 (262)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeee
Confidence            57899999999999999999999998557999999999875432 22233344567778889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeeccccc-ccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           80 GGLEMALACDLRICGEAALLGLPETG-LAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~-~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      ||++|+++||+||++++++|++||++ +|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       116 gG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~  180 (262)
T PRK06144        116 GGAAIAAACDLRIATPSARFGFPIARTLGNCLS---------------MSNLARLVALLGAARVKDMLFTARLLEAEEAL  180 (262)
T ss_pred             hHHHHHHhCCEEEecCCCEeechhHHhccCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHH
Confidence            99999999999999999999999997 999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       181 ~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K  217 (262)
T PRK06144        181 AAGLVNEVVEDAALDARADALAELLAAHAPLTLRATK  217 (262)
T ss_pred             HcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999876

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=7.4e-44  Score=293.35  Aligned_cols=179  Identities=29%  Similarity=0.431  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-C-h-h-hHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-S-P-S-EIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~-~-~-~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.++++.++.|+++|+|||||. |++||+|.|++++... . . . ....+...+..++..+.++||||||+|||+
T Consensus        36 m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  114 (275)
T PRK09120         36 LNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGW  114 (275)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence            57899999999999999999999998 6899999999986432 1 1 1 122233345677888999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++|
T Consensus       115 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~llltg~~~~A~e  179 (275)
T PRK09120        115 CFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPG---------------GGVSKAMADTVGHRDALYYIMTGETFTGRK  179 (275)
T ss_pred             EechhHHHHHhCCEEEEeCCcEecCCccccCCCCC---------------cchHHHHHHHcCHHHHHHHHhcCCccCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.+++++|++.||.+++.+|
T Consensus       180 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  218 (275)
T PRK09120        180 AAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAK  218 (275)
T ss_pred             HHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999876

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.1e-44  Score=292.18  Aligned_cols=179  Identities=28%  Similarity=0.349  Sum_probs=164.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+.+|.+++++++.|+++|+|||||. |++||+|.|++++....  ......+...+.+++..+.++||||||+|||+|+
T Consensus        40 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  118 (268)
T PRK07327         40 MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAV  118 (268)
T ss_pred             HHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeee
Confidence            57899999999999999999999998 68999999999875422  2223334455677888899999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       119 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~  183 (268)
T PRK07327        119 GAGLVAALLADISIAAKDARIIDGHTRLGVAAG---------------DHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAE  183 (268)
T ss_pred             ehhhHHHHhCCEEEecCCCEEeCcccccCCCCC---------------cchhhHHHHHhCHHHHHHHHHcCCccCHHHHH
Confidence            999999999999999999999999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+++|++++.+++.++|+++++.||.+++.+|
T Consensus       184 ~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  220 (268)
T PRK07327        184 RIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTK  220 (268)
T ss_pred             HcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999876

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-43  Score=290.98  Aligned_cols=180  Identities=29%  Similarity=0.501  Sum_probs=165.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+++|.++++.++.|+++++|||+|.++++||+|.|++++...  +......+......++..+.++|||||++|||+|+
T Consensus        39 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~  118 (269)
T PRK06127         39 MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCI  118 (269)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence            5789999999999999999999999855899999999987542  12223344555667888899999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       119 GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~  183 (269)
T PRK06127        119 GGGMGIALACDIRIAAEDSRFGIPAARLGLGYG---------------YDGVKNLVDLVGPSAAKDLFYTARRFDAAEAL  183 (269)
T ss_pred             cHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHH
Confidence            999999999999999999999999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++|++++..||.+++.+|
T Consensus       184 ~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  220 (269)
T PRK06127        184 RIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAK  220 (269)
T ss_pred             HcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999998876

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-43  Score=289.38  Aligned_cols=179  Identities=38%  Similarity=0.618  Sum_probs=164.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.+++++++.|+++|+|||+|. |++||+|.|++++..... .....+....++++.++.++||||||+|||+|+|
T Consensus        29 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~G  107 (257)
T PRK07658         29 VLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALG  107 (257)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeee
Confidence            57899999999999999999999997 689999999998754332 2233344566778889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       108 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~  172 (257)
T PRK07658        108 GGLELAMSCHIRFATESAKLGLPELNLGLIPG---------------FAGTQRLPRYVGKAKALEMMLTSEPITGAEALK  172 (257)
T ss_pred             HHHHHHHhCCEEEecCCCcccCcccccCCCCC---------------CcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+++|++++.+++.++++++++.||.+++.+|
T Consensus       173 ~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  208 (257)
T PRK07658        173 WGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVL  208 (257)
T ss_pred             cCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999998876

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-43  Score=290.82  Aligned_cols=179  Identities=30%  Similarity=0.507  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC------hhh-HHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS------PSE-IHFYVNTLRSTFSFLEALPIPTIAVI   73 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav   73 (195)
                      |+++|.+++++++.||++|+|||+|. |++||+|.|++++....      ... ...+...+.+++.++.++|||+||+|
T Consensus        32 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav  110 (266)
T PRK09245         32 AVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAV  110 (266)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            57899999999999999999999997 68999999999875321      111 12233345677888999999999999


Q ss_pred             CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329           74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS  153 (195)
Q Consensus        74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~  153 (195)
                      ||+|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++
T Consensus       111 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~  175 (266)
T PRK09245        111 NGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPG---------------DGGAWLLPRIIGMARAAEMAFTGDAID  175 (266)
T ss_pred             CCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCC---------------cchhhhHHHHhhHHHHHHHHHcCCCcC
Confidence            99999999999999999999999999999999999999               999999999999999999999999999


Q ss_pred             HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       176 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  217 (266)
T PRK09245        176 AATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTK  217 (266)
T ss_pred             HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999999876

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=1.1e-43  Score=290.01  Aligned_cols=180  Identities=28%  Similarity=0.473  Sum_probs=160.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.++++.++.|+++|+|||||.++++||+|.|++++..... .........+.+++..+.++||||||+|||+|+|
T Consensus        31 ~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  110 (259)
T TIGR01929        31 TVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIG  110 (259)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEeh
Confidence            578999999999999999999999985489999999987642211 1110111124567778899999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +++++++++++|+.++++++++|++++++||++
T Consensus       111 gG~~lalacD~~ia~~~a~f~~pe~~~G~~p~---------------~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~  175 (259)
T TIGR01929       111 GGHVLHVVCDLTIAAENARFGQTGPKVGSFDG---------------GYGSSYLARIVGQKKAREIWFLCRQYDAEQALD  175 (259)
T ss_pred             HHHHHHHhCCEEEecCCCEecCcccccccCCC---------------ccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHH
Confidence            99999999999999999999999999999999               889999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       176 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  211 (259)
T TIGR01929       176 MGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLK  211 (259)
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999887

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-43  Score=289.38  Aligned_cols=177  Identities=33%  Similarity=0.467  Sum_probs=162.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.||++|+|||||. |++||+|.|++++.........  ...+++++.++.++|||+||+|||+|+||
T Consensus        32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~--~~~~~~~~~~i~~~~kPvIAaV~G~a~Gg  108 (258)
T PRK06190         32 LRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYGA--QDALPNPSPAWPAMRKPVIGAINGAAVTG  108 (258)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhhH--HHHHHHHHHHHHhCCCCEEEEECCEeecH
Confidence            57899999999999999999999997 7899999999987543222111  23456788889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       109 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~  173 (258)
T PRK06190        109 GLELALACDILIASERARFADTHARVGILPG---------------WGLSVRLPQKVGIGRARRMSLTGDFLDAADALRA  173 (258)
T ss_pred             HHHHHHhCCEEEEeCCCEEECcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence            9999999999999999999999999999999               8999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++|++++.+++.+++++++++||.+++.+|
T Consensus       174 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  208 (258)
T PRK06190        174 GLVTEVVPHDELLPRARRLAASIAGNNPAAVRALK  208 (258)
T ss_pred             CCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.4e-44  Score=289.89  Aligned_cols=179  Identities=25%  Similarity=0.356  Sum_probs=158.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHH-HHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF-SFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.++++++++|+++|+|||+|. |++||+|.|++++..........+.....+.+ ..+.++||||||+|||+|+|
T Consensus        27 ~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  105 (255)
T PRK06563         27 MLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLT  105 (255)
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeec
Confidence            57899999999999999999999998 68999999999875421111111222222223 35788999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       106 gG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~  170 (255)
T PRK06563        106 LGIELMLAADIVVAADNTRFAQLEVQRGILPF---------------GGATLRFPQAAGWGNAMRYLLTGDEFDAQEALR  170 (255)
T ss_pred             HHHHHHHhCCEEEecCCCEEeChhhhcCCCCC---------------ccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       171 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  206 (255)
T PRK06563        171 LGLVQEVVPPGEQLERAIELAERIARAAPLGVQATL  206 (255)
T ss_pred             cCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999999999999999999999999999998876

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-43  Score=288.68  Aligned_cols=177  Identities=34%  Similarity=0.542  Sum_probs=161.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.|+++|+|||+|. |+.||+|.|++++...+..  ..+...+.+++.++..+||||||+|||+|+||
T Consensus        32 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kpvIaav~G~a~Gg  108 (257)
T PRK05862         32 LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFM--DVYKGDYITNWEKVARIRKPVIAAVAGYALGG  108 (257)
T ss_pred             HHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchh--HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHH
Confidence            57899999999999999999999997 7899999999987543221  12223445577889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       109 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~  173 (257)
T PRK05862        109 GCELAMMCDIIIAADTAKFGQPEIKLGVLPG---------------MGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERA  173 (257)
T ss_pred             HHHHHHHCCEEEEeCCCEEeCchhccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       174 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  208 (257)
T PRK05862        174 GLVSRVVPADKLLDEALAAATTIASFSLPAVMMAK  208 (257)
T ss_pred             CCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-43  Score=288.38  Aligned_cols=178  Identities=23%  Similarity=0.351  Sum_probs=162.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.+++|+++|+||++|. |++||+|.|++++...... ...+...+++++.++.++||||||+|||+|+||
T Consensus        34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  111 (251)
T PRK06023         34 MYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMG-GTSFGSEILDFLIALAEAEKPIVSGVDGLAIGI  111 (251)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhcccc-chhhHHHHHHHHHHHHhCCCCEEEEeCCceecH
Confidence            67899999999999999999999997 6899999999987542211 112334566788899999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       112 G~~la~acD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~  176 (251)
T PRK06023        112 GTTIHLHCDLTFASPRSLFRTPFVDLALVPE---------------AGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEA  176 (251)
T ss_pred             HHHHHHhCCEEEEeCCCEecCcccccCCCCC---------------chHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|.+++.+++.+++++++..||.+++.+|
T Consensus       177 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  211 (251)
T PRK06023        177 GLIWKIVDEEAVEAETLKAAEELAAKPPQALQIAR  211 (251)
T ss_pred             CCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-43  Score=291.04  Aligned_cols=179  Identities=26%  Similarity=0.422  Sum_probs=163.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-----------hhhHHHHHHHHHHHHHHHHcCCCcE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-----------PSEIHFYVNTLRSTFSFLEALPIPT   69 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~kp~   69 (195)
                      |+.+|.+++++++.|+++|+|||||. |++||+|.|++++....           ......+...+.+++..+..+||||
T Consensus        34 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpv  112 (272)
T PRK06142         34 FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPV  112 (272)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            57899999999999999999999997 68999999999874310           1122234455677888899999999


Q ss_pred             EEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcC
Q 029329           70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTG  149 (195)
Q Consensus        70 Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g  149 (195)
                      ||+|||+|+|||++|+++||+||++++++|++||+++|++|+               .|+++++++++|..++++++++|
T Consensus       113 IAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~G~~~a~~l~l~g  177 (272)
T PRK06142        113 IAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVAD---------------VGSLQRLPRIIGDGHLRELALTG  177 (272)
T ss_pred             EEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCC---------------chHHHHHHHHhCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999               99999999999999999999999


Q ss_pred             CCCCHHHHHhcCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          150 RKVSGKDAMSLGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       150 ~~~~a~eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++++++||+++||||+|+|+ +++.+++.++++++++.||.+++.+|
T Consensus       178 ~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K  224 (272)
T PRK06142        178 RDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTK  224 (272)
T ss_pred             CCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999996 88999999999999999999999876

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-44  Score=286.79  Aligned_cols=177  Identities=41%  Similarity=0.682  Sum_probs=159.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.+++..+++|+++.++|+||. ++.||+|.|++++......+..  ...+.+.+..+.+.+||+|+++||+|+||
T Consensus        65 ~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~~~~~~--~~~~~~~~~~~~~~~KPvIaainG~AlgG  141 (290)
T KOG1680|consen   65 TMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDEFQDVS--DGIFLRVWDLVSRLKKPVIAAINGFALGG  141 (290)
T ss_pred             HHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhccccccc--cccccchhhhhhhcccceeEeeeceeecc
Confidence            47899999999999999999999998 7999999999998654322211  11223334444489999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|++.||+|||.++++|++++.++|++|.               +|++++|+|.+|.++|+++++||++++++||+++
T Consensus       142 G~ELalmCDirva~~~Akfg~~~~~~Gi~p~---------------~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~  206 (290)
T KOG1680|consen  142 GLELALMCDIRVAGEGAKFGFFEIRMGIIPS---------------WGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKI  206 (290)
T ss_pred             chhhhhhcceEeccCCCeecccccccCCccC---------------CCchhhHHHHhChHHHHHHHHhcCcccHHHHHhC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |||++|+|.++++++|.+|+++|+++||.++++.|
T Consensus       207 GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K  241 (290)
T KOG1680|consen  207 GLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADK  241 (290)
T ss_pred             CceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998865

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=2.2e-43  Score=288.55  Aligned_cols=179  Identities=30%  Similarity=0.498  Sum_probs=160.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.|+++|+||+||.++++||+|.|++++...+... ..+.......+.++..+||||||+|||+|+||
T Consensus        30 ~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  108 (261)
T PRK03580         30 TSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGG  108 (261)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhHHHHHHHhCCCCEEEEECCeeehH
Confidence            57899999999999999999999998558999999999875432211 11212223456788899999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       109 G~~lalacD~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~  173 (261)
T PRK03580        109 GFELALAADFIVCADNASFALPEAKLGIVPD---------------SGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRW  173 (261)
T ss_pred             HHHHHHHCCEEEecCCCEEeCcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence            9999999999999999999999999999999               8999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       174 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  208 (261)
T PRK03580        174 GIVNRVVPQAELMDRARELAQQLVNSAPLAIAALK  208 (261)
T ss_pred             CCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=2.4e-43  Score=287.45  Aligned_cols=177  Identities=37%  Similarity=0.582  Sum_probs=162.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.+++|+++|+|||||. |++||+|.|++++...+..  ..+.....+++.++..+||||||+|||+|+||
T Consensus        30 ~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  106 (255)
T PRK09674         30 LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGA  106 (255)
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchh--hhHHHHHHHHHHHHHhCCCCEEEEECCEeehH
Confidence            57899999999999999999999997 6899999999987543221  12223445678889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  171 (255)
T PRK09674        107 GCELALLCDIVIAGENARFGLPEITLGIMPG---------------AGGTQRLIRSVGKSLASQMVLTGESITAQQAQQA  171 (255)
T ss_pred             HHHHHHhCCEEEecCCCEEeCchhhcCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       172 Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K  206 (255)
T PRK09674        172 GLVSEVFPPELTLERALQLASKIARHSPLALRAAK  206 (255)
T ss_pred             CCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=2.6e-43  Score=290.15  Aligned_cols=179  Identities=30%  Similarity=0.513  Sum_probs=162.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-----------hhHHHHHHHHHHHHHHHHcCCCcE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLEALPIPT   69 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~kp~   69 (195)
                      |+++|.++++.++.|+++|+|||+|. |++||+|.|++++.....           .....+...+++++.++.++||||
T Consensus        36 ~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  114 (275)
T PLN02664         36 FFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPV  114 (275)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            57899999999999999999999997 689999999998753211           112233455667888899999999


Q ss_pred             EEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcC
Q 029329           70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTG  149 (195)
Q Consensus        70 Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g  149 (195)
                      ||+|||+|+|||++|+++||+||++++++|++||+++|+.|+               +|+++++++++|..++++++++|
T Consensus       115 Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~A~~l~ltg  179 (275)
T PLN02664        115 IAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITAD---------------LGTLQRLPSIVGYGNAMELALTG  179 (275)
T ss_pred             EEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCC---------------ccHHHHHHHHhCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999               99999999999999999999999


Q ss_pred             CCCCHHHHHhcCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          150 RKVSGKDAMSLGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       150 ~~~~a~eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++++++||+++||||+|+|+ +++.+.+.+++++|++.||.+++.+|
T Consensus       180 ~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K  226 (275)
T PLN02664        180 RRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTK  226 (275)
T ss_pred             CCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999995 88999999999999999999999876

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-43  Score=287.56  Aligned_cols=177  Identities=36%  Similarity=0.579  Sum_probs=162.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.+++|+++|+|||+|. |+.||+|.|++++...+.  ...+...+++++.++.++|||+||+|||+|+||
T Consensus        36 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  112 (261)
T PRK08138         36 VRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGA--IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGG  112 (261)
T ss_pred             HHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccch--hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcH
Confidence            57899999999999999999999997 789999999998754321  223344566788889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       113 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~  177 (261)
T PRK08138        113 GCELAMHADIIVAGESASFGQPEIKVGLMPG---------------AGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAI  177 (261)
T ss_pred             HHHHHHhCCEEEecCCCEeeCcccccccCCC---------------CcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       178 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  212 (261)
T PRK08138        178 GLVSEVVEDEQTLPRALELAREIARMPPLALAQIK  212 (261)
T ss_pred             CCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-43  Score=287.47  Aligned_cols=179  Identities=27%  Similarity=0.467  Sum_probs=165.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.++++++++|+++|+|||+|. ++.||+|.|++++...   +......+...+++++.++.++||||||+|||+|
T Consensus        31 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a  109 (260)
T PRK07511         31 MYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAA  109 (260)
T ss_pred             HHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence            67899999999999999999999997 6899999999987542   2223344556778888999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       110 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA  174 (260)
T PRK07511        110 AGAGFSLALACDLLVAARDAKFVMAYVKVGLTPD---------------GGGSWFLARALPRQLATELLLEGKPISAERL  174 (260)
T ss_pred             ehHHHHHHHhCCEEEeeCCCEEeccccccCcCCC---------------chHHHHHHHHhCHHHHHHHHHhCCCCCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       175 ~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K  212 (260)
T PRK07511        175 HALGVVNRLAEPGQALAEALALADQLAAGSPNALARIK  212 (260)
T ss_pred             HHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999998876

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=4.3e-43  Score=287.54  Aligned_cols=178  Identities=29%  Similarity=0.447  Sum_probs=161.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|++++.... ......+.+.+.+++.++.++||||||+|||+|+|
T Consensus        39 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  117 (266)
T PRK08139         39 MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATA  117 (266)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeH
Confidence            57899999999999999999999998 68999999999875432 22233445566778889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               ++ .+++++++|..++++++++|++++++||++
T Consensus       118 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~  181 (266)
T PRK08139        118 AGCQLVASCDLAVAADTARFAVPGVNIGLFCS---------------TP-MVALSRNVPRKQAMEMLLTGEFIDAATARE  181 (266)
T ss_pred             HHHHHHHhCCEEEEeCCCEEeCcccCcCCCCC---------------cc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHH
Confidence            99999999999999999999999999999987               64 567999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       182 ~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  217 (266)
T PRK08139        182 WGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGK  217 (266)
T ss_pred             cCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=3.5e-43  Score=286.67  Aligned_cols=178  Identities=29%  Similarity=0.467  Sum_probs=160.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh--hh-HHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP--SE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++++++++|+ +|+|||||. |++||+|.|++++.....  .+ ...+...+..++.++..+||||||+|||+|
T Consensus        27 ~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  104 (256)
T TIGR02280        27 MHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVA  104 (256)
T ss_pred             HHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence            5789999999999998 999999997 689999999998754211  11 112223345677889999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       105 ~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA  169 (256)
T TIGR02280       105 AGAGANLALACDIVLAAESARFIQAFAKIGLIPD---------------SGGTWSLPRLVGRARAMGLAMLGEKLDARTA  169 (256)
T ss_pred             ehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus       170 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K  207 (256)
T TIGR02280       170 ASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTK  207 (256)
T ss_pred             HHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999876

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-43  Score=288.65  Aligned_cols=179  Identities=30%  Similarity=0.419  Sum_probs=161.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-------hhhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------PSEIHFYVNTLRSTFSFLEALPIPTIAVI   73 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~kp~Iaav   73 (195)
                      |+++|.++++++++|+++|+|||+|. |++||+|.|++++....       ......+...+++++.++.++||||||+|
T Consensus        38 ~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  116 (276)
T PRK05864         38 VMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAV  116 (276)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            57899999999999999999999997 68999999999864211       11112233456677888999999999999


Q ss_pred             CCcccchhHHHhhhCCEEEEeCCceeecccccccccC-CCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCC
Q 029329           74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKV  152 (195)
Q Consensus        74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p-~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~  152 (195)
                      ||+|+|||++|+++||+||++++++|++||+++|++| .               +|+++++++++|..++++++++|+++
T Consensus       117 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~---------------~g~~~~l~~~vG~~~A~~l~l~g~~~  181 (276)
T PRK05864        117 NGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASE---------------LGLSYLLPRAIGSSRAFEIMLTGRDV  181 (276)
T ss_pred             CCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCC---------------cchheehHhhhCHHHHHHHHHcCCcc
Confidence            9999999999999999999999999999999999997 6               78889999999999999999999999


Q ss_pred             CHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          153 SGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       153 ~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||+++||||+|+|++++.+++.++|++|+..||.+++.+|
T Consensus       182 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  224 (276)
T PRK05864        182 DAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTK  224 (276)
T ss_pred             CHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999999998876

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-43  Score=285.49  Aligned_cols=177  Identities=29%  Similarity=0.432  Sum_probs=161.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.+++||++|+|||+|. |++||+|.|++++..............+.+.+..+.++|||||++|||+|+||
T Consensus        31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  109 (249)
T PRK05870         31 MSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGA  109 (249)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEch
Confidence            57899999999999999999999998 68999999999876432222233345566677889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|+.++++++++|++++++||+++
T Consensus       110 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~  174 (249)
T PRK05870        110 GLNLALAADVRIAGPKALFDARFQKLGLHPG---------------GGATWMLQRAVGPQVARAALLFGMRFDAEAAVRH  174 (249)
T ss_pred             hHHHHHhCCEEEEcCCCEEeCcccccCcCCC---------------CcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++  +++.+++.++++++++.||.+++.+|
T Consensus       175 Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K  207 (249)
T PRK05870        175 GLALMVA--DDPVAAALELAAGPAAAPRELVLATK  207 (249)
T ss_pred             CCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999  67999999999999999999999887

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.9e-43  Score=286.19  Aligned_cols=178  Identities=28%  Similarity=0.461  Sum_probs=160.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC---hhh-HHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---PSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.+++++++ |+++++|||+|. |++||+|.|++++....   ... ...+...+..++.++.++||||||+|||+
T Consensus        32 ~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~  109 (262)
T PRK08140         32 MHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGV  109 (262)
T ss_pred             HHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            5789999999999 999999999998 68999999999874321   111 11222334567788999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++|
T Consensus       110 a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e  174 (262)
T PRK08140        110 AAGAGANLALACDIVLAARSASFIQAFVKIGLVPD---------------SGGTWFLPRLVGMARALGLALLGEKLSAEQ  174 (262)
T ss_pred             eehhHHHHHHhCCEEEecCCCEEeccccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHH
Confidence            99999999999999999999999999999999999               899999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.+++++++..||.+++.+|
T Consensus       175 A~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K  213 (262)
T PRK08140        175 AEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIK  213 (262)
T ss_pred             HHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999998876

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=5.9e-43  Score=287.75  Aligned_cols=179  Identities=27%  Similarity=0.474  Sum_probs=159.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+.+|.++++.++.|+++|+|||||.|+++||+|.|++++...+  ........ ...+++..+.++||||||+|||+|+
T Consensus        41 ~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~  119 (273)
T PRK07396         41 TVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NVLDLQRLIRTCPKPVIAMVAGYAI  119 (273)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HHHHHHHHHHhCCCCEEEEECCEEe
Confidence            57899999999999999999999998547999999999864321  11111111 2345677889999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               ++++.++++++|..++++++++|++++++||+
T Consensus       120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~  184 (273)
T PRK07396        120 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDG---------------GYGASYLARIVGQKKAREIWFLCRQYDAQEAL  184 (273)
T ss_pred             hHHHHHHHhCCEEEeeCCcEEecccccccccCC---------------chHHHHHHHHhhHHHHHHHHHhCCCcCHHHHH
Confidence            999999999999999999999999999999998               88899999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       185 ~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  221 (273)
T PRK07396        185 DMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLK  221 (273)
T ss_pred             HcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999887

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.9e-43  Score=286.20  Aligned_cols=178  Identities=28%  Similarity=0.452  Sum_probs=159.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|++++...   +..........+.+++.++.++||||||+|||+|
T Consensus        32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  110 (262)
T PRK05995         32 VIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDA  110 (262)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence            57899999999999999999999998 6899999999987432   1111222234567788899999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +++. ++++++|..++++++++|++++++||
T Consensus       111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA  174 (262)
T PRK05995        111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPA---------------TISP-YVIRAMGERAARRYFLTAERFDAAEA  174 (262)
T ss_pred             EhhHHHHHHhCCEEEeeCCCEEeCcccccccCcc---------------chHH-HHHHHhCHHHHHHHHHcCCccCHHHH
Confidence            9999999999999999999999999999999998               7654 58899999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       175 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  212 (262)
T PRK05995        175 LRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGK  212 (262)
T ss_pred             HHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999998876

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.4e-43  Score=285.91  Aligned_cols=178  Identities=32%  Similarity=0.553  Sum_probs=164.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.|+++|+|||+|. |++||+|.|++++....... ..+...+++++.++.++|||+||+|||+|+||
T Consensus        33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~Gg  110 (259)
T PRK06688         33 MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNRFLRAIAALPKPVVAAVNGPAVGV  110 (259)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHHHHHHHHcCCCCEEEEECCeeecH
Confidence            57899999999999999999999998 68999999999876533222 34556678888999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       111 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~  175 (259)
T PRK06688        111 GVSLALACDLVYASESAKFSLPFAKLGLCPD---------------AGGSALLPRLIGRARAAEMLLLGEPLSAEEALRI  175 (259)
T ss_pred             HHHHHHhCCEEEecCCCEecCchhhcCCCCC---------------cchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++|++++.+++.++++++++.||.+++.+|
T Consensus       176 Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K  210 (259)
T PRK06688        176 GLVNRVVPAAELDAEADAQAAKLAAGPASALRYTK  210 (259)
T ss_pred             CCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998776

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=2.9e-43  Score=285.28  Aligned_cols=179  Identities=43%  Similarity=0.717  Sum_probs=170.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++|+.++.|+++|+||++|. ++.||+|.|++++...+.+....+.+.+++++.++..+||||||+|||+|.|+
T Consensus        26 ~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~Gg  104 (245)
T PF00378_consen   26 MLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGG  104 (245)
T ss_dssp             HHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETH
T ss_pred             HHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhccccccchhhhhheeeccccccccc
Confidence            57899999999999999999999886 89999999999987766666778889999999999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++++++||+||++++++|++||+++|++|+               +|+++++++++|.+.+++++++|++++++||+++
T Consensus       105 G~~lala~D~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~  169 (245)
T PF00378_consen  105 GFELALACDFRIAAEDAKFGFPEVRLGIFPG---------------AGGTFRLPRLIGPSRARELLLTGEPISAEEALEL  169 (245)
T ss_dssp             HHHHHHHSSEEEEETTTEEETGGGGGTSSST---------------STHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHT
T ss_pred             ccccccccceEEeecccceeeeecccCcccc---------------cccccccceeeecccccccccccccchhHHHHhh
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.+++++++..|+.+++.+|
T Consensus       170 Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K  204 (245)
T PF00378_consen  170 GLVDEVVPDEELDEEALELAKRLAAKPPSALRATK  204 (245)
T ss_dssp             TSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999999999999999999999876

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.4e-43  Score=285.56  Aligned_cols=177  Identities=33%  Similarity=0.487  Sum_probs=157.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.++.|+++|+|||+|.++++||+|.|++++.........  ...+..+. .+.++||||||+|||+|+||
T Consensus        32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~--~~~~~~~~-~~~~~~kPvIaav~G~a~Gg  108 (259)
T PRK06494         32 AHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWP--ESGFGGLT-SRFDLDKPIIAAVNGVAMGG  108 (259)
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhh--hHHHHHHH-HHhcCCCCEEEEECCEEecH
Confidence            5789999999999999999999999855799999999987543221110  11222333 34589999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       109 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~  173 (259)
T PRK06494        109 GFELALACDLIVAAENATFALPEPRVGLAAL---------------AGGLHRLPRQIGLKRAMGMILTGRRVTAREGLEL  173 (259)
T ss_pred             HHHHHHhCCEEEEeCCCEEeCcccccCCCCC---------------chHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++|++++.+++.+++++++..||.+++.+|
T Consensus       174 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  208 (259)
T PRK06494        174 GFVNEVVPAGELLAAAERWADDILACSPLSIRASK  208 (259)
T ss_pred             CCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999999876

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7e-43  Score=287.85  Aligned_cols=179  Identities=22%  Similarity=0.370  Sum_probs=163.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC----ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.+++++++.|+++|+|||||. |++||+|.|++++...    +......+...+.+++..+.++||||||+|||+
T Consensus        45 ~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~  123 (277)
T PRK08258         45 SYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGV  123 (277)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            57899999999999999999999997 6899999999987431    122233445556778889999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccC-CCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p-~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      |+|||++|+++||+||++++++|++||+++|++| +               +|+++++++++|..++++++++|++++++
T Consensus       124 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~  188 (277)
T PRK08258        124 CAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGAD---------------MGACALLPRIIGQGRASELLYTGRSMSAE  188 (277)
T ss_pred             eehHHHHHHHhCCEEEecCCCEEeccccccCcCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCCCCHH
Confidence            9999999999999999999999999999999985 6               78899999999999999999999999999


Q ss_pred             HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       189 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  228 (277)
T PRK08258        189 EGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTK  228 (277)
T ss_pred             HHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999999876

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7e-43  Score=284.75  Aligned_cols=179  Identities=22%  Similarity=0.369  Sum_probs=163.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-Ch---hhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.++++.++.|+++++||++|. |++||+|.|++++... ..   .....+.+.+++++.++.++||||||+|||+
T Consensus        30 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~  108 (255)
T PRK07260         30 MCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGA  108 (255)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCe
Confidence            57899999999999999999999997 6899999999987532 11   1222344556778889999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               .|+++++++++|..++++++++|++++++|
T Consensus       109 a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~sa~e  173 (255)
T PRK07260        109 VAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPD---------------AGGLFLLTRAIGLNRATHLAMTGEALTAEK  173 (255)
T ss_pred             eehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCC---------------CchhhhhHHhhCHHHHHHHHHhCCccCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+++|++++.+++.++++++++.+|.+++.+|
T Consensus       174 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  212 (255)
T PRK07260        174 ALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIK  212 (255)
T ss_pred             HHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999876

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=5e-43  Score=287.02  Aligned_cols=178  Identities=26%  Similarity=0.383  Sum_probs=159.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh---hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++++.++.|+++|+|||||. |++||+|.|++++.....   .........+.+++..+.++||||||+|||+|
T Consensus        34 ~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a  112 (265)
T PRK05674         34 MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAA  112 (265)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence            67899999999999999999999998 689999999998743211   11112234456788889999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +++. ++++++|..++++++++|++++++||
T Consensus       113 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~---------------~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA  176 (265)
T PRK05674        113 FGGALGLISCCDMAIGADDAQFCLSEVRIGLAPA---------------VISP-FVVKAIGERAARRYALTAERFDGRRA  176 (265)
T ss_pred             EechhhHhhhcCEEEEeCCCEEeCcccccCCCcc---------------hhHH-HHHHHhCHHHHHHHHHhCcccCHHHH
Confidence            9999999999999999999999999999999998               7654 58899999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       177 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  214 (265)
T PRK05674        177 RELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASK  214 (265)
T ss_pred             HHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999999999876

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=7.6e-43  Score=285.39  Aligned_cols=178  Identities=22%  Similarity=0.458  Sum_probs=162.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCC-CCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++++++++|+ +|+|||||.+ +++||+|.|++++..... +...+...+++++..+..+||||||+|||+|+|
T Consensus        32 ~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~G  109 (261)
T PRK11423         32 LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-DPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWG  109 (261)
T ss_pred             HHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-cHHHHHHHHHHHHHHHHhCCCCEEEEEecEEec
Confidence            5789999999999988 9999999963 589999999998753221 122344566788889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|+.++++++++|++++++||++
T Consensus       110 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~  174 (261)
T PRK11423        110 GAFELIMSCDLIIAASTSTFAMTPANLGVPYN---------------LSGILNFTNDAGFHIVKEMFFTASPITAQRALA  174 (261)
T ss_pred             hHHHHHHhCCEEEecCCCEecCchhhcCCCCC---------------ccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHH
Confidence            99999999999999999999999999999998               899999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       175 ~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  210 (261)
T PRK11423        175 VGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIK  210 (261)
T ss_pred             cCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999999999999999999999999999999876

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-42  Score=289.04  Aligned_cols=179  Identities=28%  Similarity=0.388  Sum_probs=161.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---C--------------hhhHHHHHHHHHHHHHHHH
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---S--------------PSEIHFYVNTLRSTFSFLE   63 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~   63 (195)
                      |+.+|.++|+.++.|+++|+|||||. |++||+|.|++++...   .              ......+...+.+++.++.
T Consensus        32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  110 (296)
T PRK08260         32 MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIF  110 (296)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999997 6899999999986420   0              0011223344566788899


Q ss_pred             cCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHH
Q 029329           64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAK  143 (195)
Q Consensus        64 ~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~  143 (195)
                      .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..+++
T Consensus       111 ~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~  175 (296)
T PRK08260        111 DSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE---------------AASSWFLPRLVGLQTAL  175 (296)
T ss_pred             hCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC---------------cchhhhHHHhhCHHHHH
Confidence            999999999999999999999999999999999999999999999999               99999999999999999


Q ss_pred             HHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhc-CHHHHHhhC
Q 029329          144 DIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL  195 (195)
Q Consensus       144 ~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~-~~~~~~~~k  195 (195)
                      +++++|++++++||+++||||+|+|++++.+++.+++++++++ +|.+++.+|
T Consensus       176 ~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K  228 (296)
T PRK08260        176 EWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTR  228 (296)
T ss_pred             HHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            9999999999999999999999999999999999999999995 999998876

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=1.2e-42  Score=284.76  Aligned_cols=176  Identities=28%  Similarity=0.453  Sum_probs=159.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.++.|+++|+|||||. |++||+|.|++++........   .....+++..+.++||||||+|||+|+||
T Consensus        38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~~~~~~~~i~~~~kPvIaav~G~a~Gg  113 (265)
T PLN02888         38 MMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGDV---KDVETDPVAQMERCRKPIIGAINGFAITA  113 (265)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccchh---hHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence            57899999999999999999999998 689999999997643111111   11234566778899999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       114 G~~lal~cD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~  178 (265)
T PLN02888        114 GFEIALACDILVASRGAKFIDTHAKFGIFPS---------------WGLSQKLSRIIGANRAREVSLTAMPLTAETAERW  178 (265)
T ss_pred             HHHHHHhCCEEEecCCCEecCccccccCCCC---------------ccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       179 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  213 (265)
T PLN02888        179 GLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYK  213 (265)
T ss_pred             CCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999887

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=1.4e-42  Score=286.06  Aligned_cols=180  Identities=25%  Similarity=0.351  Sum_probs=161.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCC-CCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++++++++|+++|+|||||.+ +++||+|.|++++....  ......+.....+++.++.++||||||+|||+|
T Consensus        39 ~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a  118 (278)
T PLN03214         39 MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGAC  118 (278)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcc
Confidence            578999999999999999999999984 27999999999875321  111223334445677889999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccc-cCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAI-IPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~-~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      +|||++|+++||+||++++++|++||+++|+ +|+               .++++++++++|..++++++++|++++++|
T Consensus       119 ~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~---------------~~~~~~l~~~~G~~~a~~llltg~~~~a~e  183 (278)
T PLN03214        119 PAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPK---------------FWARLFMGRVIDRKVAESLLLRGRLVRPAE  183 (278)
T ss_pred             cchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCC---------------hhHHHHHHHhcCHHHHHHHHHcCCccCHHH
Confidence            9999999999999999999999999999999 588               888999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|.+++.+++.+++++++..+|.+++.+|
T Consensus       184 A~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  222 (278)
T PLN03214        184 AKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATK  222 (278)
T ss_pred             HHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999876

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-42  Score=284.20  Aligned_cols=178  Identities=32%  Similarity=0.542  Sum_probs=158.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhH-H-H-H-HHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-H-F-Y-VNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~-~-~-~-~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|++++...+.... . . + ...+.. +.++..+||||||+|||+
T Consensus        33 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~  110 (263)
T PRK07799         33 MLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGP  110 (263)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhhHHHH-HHHHhcCCCCEEEEECCe
Confidence            67899999999999999999999998 689999999998754321111 1 1 1 122222 335778999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|.               +|+++++++++|..++++++++|++++++|
T Consensus       111 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e  175 (263)
T PRK07799        111 AIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPM---------------GGSAVRLVRQIPYTVACDLLLTGRHITAAE  175 (263)
T ss_pred             EeccHHHHHHhCCEEEecCCCEecCcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       176 A~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K  214 (263)
T PRK07799        176 AKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAIL  214 (263)
T ss_pred             HHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHH
Confidence            999999999999999999999999999999999998876

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-42  Score=282.69  Aligned_cols=178  Identities=26%  Similarity=0.392  Sum_probs=159.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.++++.++.|+++++|||+|. |++||+|.|++++...   +..........+..++..+..+||||||+|||+|
T Consensus        33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  111 (262)
T PRK07468         33 MIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQA  111 (262)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence            57899999999999999999999997 6899999999987431   1112222334566788889999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++ +++|..++++++++|++++++||
T Consensus       112 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA  175 (262)
T PRK07468        112 FGGGVGLISVCDVAIAVSGARFGLTETRLGLIPA---------------TISPYVV-ARMGEANARRVFMSARLFDAEEA  175 (262)
T ss_pred             EhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcc---------------cchhhHH-hhccHHHHHHHHHhCCccCHHHH
Confidence            9999999999999999999999999999999998               8887744 56999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|.+++.+++.++++++++.+|.+++.+|
T Consensus       176 ~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K  213 (262)
T PRK07468        176 VRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAK  213 (262)
T ss_pred             HHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999999998876

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-42  Score=281.53  Aligned_cols=175  Identities=32%  Similarity=0.478  Sum_probs=156.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.|+++|+|||+|. |++||+|.|++++...+....  ....+..++  ...+||||||+|||+|+||
T Consensus        31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~~~--~~~~~kPvIaav~G~a~Gg  105 (254)
T PRK08252         31 VAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERPSI--PGRGFGGLT--ERPPRKPLIAAVEGYALAG  105 (254)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccchhh--hHHHHHHHH--HhcCCCCEEEEECCEEehH
Confidence            67899999999999999999999997 689999999998754321111  111222222  1469999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       106 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~  170 (254)
T PRK08252        106 GFELALACDLIVAARDAKFGLPEVKRGLVAA---------------GGGLLRLPRRIPYHIAMELALTGDMLTAERAHEL  170 (254)
T ss_pred             HHHHHHhCCEEEEeCCCEEeCchhhcCCCCC---------------chHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       171 Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  205 (254)
T PRK08252        171 GLVNRLTEPGQALDAALELAERIAANGPLAVAASK  205 (254)
T ss_pred             CCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-42  Score=283.53  Aligned_cols=179  Identities=27%  Similarity=0.471  Sum_probs=162.4

Q ss_pred             CHHHHHHHHHHhhcCC-CcEEEEEEeCCCCceEeccCcchhhcCCh------hhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329            1 MLRGLKHAFETISEDS-SANVVMIRSSVPKVFCAGADLKERRQMSP------SEIHFYVNTLRSTFSFLEALPIPTIAVI   73 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~-~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~kp~Iaav   73 (195)
                      |+.+|.++++.++.|+ ++|+|||||. |++||+|.|++++.....      .....+...+++++.++.++||||||+|
T Consensus        32 ~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav  110 (266)
T PRK05981         32 MLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAV  110 (266)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            6789999999999876 4999999997 689999999998753211      1122344556778889999999999999


Q ss_pred             CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329           74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS  153 (195)
Q Consensus        74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~  153 (195)
                      ||+|+|||++|+++||+||++++++|++||.++|++|+               +|+++++++++|+.++++++++|++++
T Consensus       111 ~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~---------------~g~~~~l~~~vg~~~a~~l~l~g~~~~  175 (266)
T PRK05981        111 NGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPD---------------GGSTWLLPRLVGKARAMELSLLGEKLP  175 (266)
T ss_pred             CCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCC---------------ccHHHHHHHHhHHHHHHHHHHhCCCcC
Confidence            99999999999999999999999999999999999999               999999999999999999999999999


Q ss_pred             HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||+++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus       176 a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K  217 (266)
T PRK05981        176 AETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIR  217 (266)
T ss_pred             HHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999998876

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-42  Score=280.70  Aligned_cols=176  Identities=26%  Similarity=0.392  Sum_probs=157.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++++.++.|+++|+|||||. |++||+|.|++++...+. .........+.+++..+.++||||||+|||+|+|
T Consensus        29 ~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~G  107 (249)
T PRK07938         29 GWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLG  107 (249)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEee
Confidence            67899999999999999999999997 689999999998754321 2222233455677888999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++++                  +.++++++|+.++++++++|++++++||++
T Consensus       108 gG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~------------------~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~  169 (249)
T PRK07938        108 GGIGLVGNADVIVASDDATFGLPEVDRGALGA------------------ATHLQRLVPQHLMRALFFTAATITAAELHH  169 (249)
T ss_pred             hHHHHHHhCCEEEEeCCCEeeCccceecCchh------------------HHHHHHhcCHHHHHHHHHhCCcCCHHHHHH
Confidence            99999999999999999999999999998644                  567899999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       170 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  205 (249)
T PRK07938        170 FGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAK  205 (249)
T ss_pred             CCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999998876

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-42  Score=282.68  Aligned_cols=177  Identities=37%  Similarity=0.524  Sum_probs=156.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.+++|+++|+|||||. |++||+|.|++++...+......  .........+.++|||||++|||+|+||
T Consensus        31 ~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIaav~G~a~Gg  107 (254)
T PRK08259         31 TAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPMGPSRMRLSKPVIAAVSGYAVAG  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchhhhHHhcCCCCEEEEECCEEEhH
Confidence            67899999999999999999999997 68999999999875432211110  0011112233479999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|.               +|+++++++++|..++++++++|++++++||+++
T Consensus       108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~  172 (254)
T PRK08259        108 GLELALWCDLRVAEEDAVFGVFCRRWGVPLI---------------DGGTVRLPRLIGHSRAMDLILTGRPVDADEALAI  172 (254)
T ss_pred             HHHHHHhCCEEEecCCCEecCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHc
Confidence            9999999999999999999999999999999               8999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       173 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  207 (254)
T PRK08259        173 GLANRVVPKGQARAAAEELAAELAAFPQTCLRADR  207 (254)
T ss_pred             CCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.6e-42  Score=280.47  Aligned_cols=176  Identities=25%  Similarity=0.443  Sum_probs=161.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.|+++|+|||+|+ |++||+|.|++++....... ..+. . ++++..+.++||||||+|||+|+||
T Consensus        33 ~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~-~-~~~~~~l~~~~kPvIaav~G~a~Gg  108 (249)
T PRK07110         33 LCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGK-GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGG  108 (249)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchh-hhHh-h-HHHHHHHHcCCCCEEEEecCceech
Confidence            57899999999999999999999997 68999999999875432221 1222 2 5678889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||.++|++|+               .|+++++++++|..++++++++|++++++||+++
T Consensus       109 G~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~  173 (249)
T PRK07110        109 GLVLGLYADIVVLSRESVYTANFMKYGFTPG---------------MGATAILPEKLGLALGQEMLLTARYYRGAELKKR  173 (249)
T ss_pred             HHHHHHhCCEEEEeCCCEecCchhccCCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHc
Confidence            9999999999999999999999999999999               8899999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       174 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  208 (249)
T PRK07110        174 GVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLK  208 (249)
T ss_pred             CCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999877

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=3.3e-42  Score=281.09  Aligned_cols=178  Identities=40%  Similarity=0.659  Sum_probs=163.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhc-CChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++++.++.|+++|+|||||+ |++||+|.|++.+.. .+......+....+.++.++.++||||||+|||+|+|
T Consensus        33 ~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  111 (257)
T COG1024          33 MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALG  111 (257)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEee
Confidence            67899999999999999999999998 599999999999874 2222222566777789999999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|++++++|++|..++++++++|++++++||++
T Consensus       112 gG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg---------------~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~  176 (257)
T COG1024         112 GGLELALACDIRIAAEDAKFGLPEVNLGLLPG---------------DGGTQRLPRLLGRGRAKELLLTGEPISAAEALE  176 (257)
T ss_pred             chhhhhhcCCeEEecCCcEecCcccccccCCC---------------CcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHH
Confidence            99999999999999999999999999999999               899999999999999999999999999999999


Q ss_pred             cCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||++++. +++.+.+++++++++. +|.+++.+|
T Consensus       177 ~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~~~k  212 (257)
T COG1024         177 LGLVDEVVPDAEELLERALELARRLAA-PPLALAATK  212 (257)
T ss_pred             cCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHHHHH
Confidence            9999999986 7999999999999999 888888765

>PLN02921 naphthoate synthase

Probab=100.00  E-value=4.2e-42  Score=288.33  Aligned_cols=180  Identities=27%  Similarity=0.452  Sum_probs=160.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHH-HHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++++.++.|+++++|||+|.|+++||+|.|++++............. ...+++..+.++||||||+|||+|+|
T Consensus        95 ~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~G  174 (327)
T PLN02921         95 TVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVG  174 (327)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEec
Confidence            57899999999999999999999998558999999998764321110111111 13456778899999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|.               +++++++++++|..++++++++|++++|+||++
T Consensus       175 GG~~LalacD~riA~~~A~f~~pe~~~Gl~p~---------------~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~  239 (327)
T PLN02921        175 GGHILHMVCDLTIAADNAVFGQTGPKVGSFDA---------------GYGSSIMARLVGQKKAREMWFLARFYTASEALK  239 (327)
T ss_pred             HHHHHHHhCCEEEEeCCCEEeCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHH
Confidence            99999999999999999999999999999998               888999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.+++++|++++|.+++.+|
T Consensus       240 ~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K  275 (327)
T PLN02921        240 MGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLK  275 (327)
T ss_pred             CCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999999999999999999999999999887

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-42  Score=281.40  Aligned_cols=177  Identities=33%  Similarity=0.457  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++++++ .|+++|+||++|. |+.||+|.|++++...+ ......+...+++++.++..+||||||+|||+|+|
T Consensus        34 ~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~G  111 (260)
T PRK07659         34 MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAG  111 (260)
T ss_pred             HHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceec
Confidence            578999999999 5889999999997 68999999999875432 23334556677888889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~  176 (260)
T PRK07659        112 LGLSIALTADYVIADISAKLAMNFIGIGLIPD---------------GGGHFFLQKRVGENKAKQIIWEGKKLSATEALD  176 (260)
T ss_pred             HHHHHHHhCCEEEEcCCCEEcCchhhcCCCCC---------------CchhhhHHHhcCHHHHHHHHHhCCccCHHHHHH
Confidence            99999999999999999999999999999999               899999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+++ ++++.+++.++++++++.||.+++.+|
T Consensus       177 ~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K  211 (260)
T PRK07659        177 LGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETK  211 (260)
T ss_pred             cCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999 788999999999999999999998876

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-42  Score=280.49  Aligned_cols=176  Identities=32%  Similarity=0.565  Sum_probs=159.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+++|.++++++++|+++|+|||+|. |++||+|.|++++...  .......+...+++++.++.++||||||+|||+|+
T Consensus        31 ~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  109 (257)
T PRK06495         31 LRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPAL  109 (257)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence            57899999999999999999999997 6899999999987543  12223334455677888999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|+.++                  ++++++++|..++++++++|++++++||+
T Consensus       110 GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~------------------~~~l~~~~g~~~a~~lll~g~~~~a~eA~  171 (257)
T PRK06495        110 GAGLGLVASCDIIVASENAVFGLPEIDVGLAGG------------------GKHAMRLFGHSLTRRMMLTGYRVPAAELY  171 (257)
T ss_pred             hhHHHHHHhCCEEEecCCCEeeChhhccCcccc------------------HHHHHHHhCHHHHHHHHHcCCeeCHHHHH
Confidence            999999999999999999999999999999643                  56689999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus       172 ~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K  208 (257)
T PRK06495        172 RRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAK  208 (257)
T ss_pred             HcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999886

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.7e-42  Score=282.28  Aligned_cols=179  Identities=30%  Similarity=0.504  Sum_probs=159.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhH------HHH----HHHHHHHHHHHHcCCCcEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI------HFY----VNTLRSTFSFLEALPIPTI   70 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~kp~I   70 (195)
                      |+++|.++++.++.|+++++|||+|. |++||+|.|++++........      ..+    ...+++++..+.++|||||
T Consensus        34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  112 (272)
T PRK06210         34 MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVI  112 (272)
T ss_pred             HHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCCCEE
Confidence            57899999999999999999999997 689999999998754221100      111    1123556778999999999


Q ss_pred             EEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCC
Q 029329           71 AVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGR  150 (195)
Q Consensus        71 aav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~  150 (195)
                      |+|||+|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|+.++++++++|+
T Consensus       113 aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~ig~~~a~~l~ltg~  177 (272)
T PRK06210        113 AAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAE---------------HGISWILPRLVGHANALDLLLSAR  177 (272)
T ss_pred             EEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCC---------------CchhhhhHhhhCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999               999999999999999999999999


Q ss_pred             CCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhc-CHHHHHhhC
Q 029329          151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL  195 (195)
Q Consensus       151 ~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~-~~~~~~~~k  195 (195)
                      +++++||+++||||+++|++++.+++.++++++++. +|.++..+|
T Consensus       178 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K  223 (272)
T PRK06210        178 TFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIK  223 (272)
T ss_pred             ccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            999999999999999999999999999999999985 999998876

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.5e-41  Score=279.08  Aligned_cols=176  Identities=26%  Similarity=0.431  Sum_probs=151.0

Q ss_pred             CHHHHHHHHHHhhc-----CCCcEEEEEEeCCCCceEeccCcchhhcC--C--hhhHHHHHHHHHHHHHHHH---cCCCc
Q 029329            1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKERRQM--S--PSEIHFYVNTLRSTFSFLE---ALPIP   68 (195)
Q Consensus         1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~--~~~~~~~~~~~~~~~~~~~---~~~kp   68 (195)
                      |+++|.++++++++     |+++|+|||+|.+|++||+|.|++++...  .  ......+...+.+.+.++.   .+|||
T Consensus        44 ~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkP  123 (287)
T PRK08788         44 LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAI  123 (287)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            57899999999998     89999999999867899999999987431  1  1111122222233333333   79999


Q ss_pred             EEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHc
Q 029329           69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFT  148 (195)
Q Consensus        69 ~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~  148 (195)
                      |||+|||+|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++
T Consensus       124 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~---------------~g~~~~l~~~vG~~~A~elllt  188 (287)
T PRK08788        124 SIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPG---------------MGAYSFLARRVGPKLAEELILS  188 (287)
T ss_pred             EEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCC---------------chHHHHHHHHhhHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999               8999999999999999999999


Q ss_pred             CCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHH
Q 029329          149 GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR  192 (195)
Q Consensus       149 g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~  192 (195)
                      |++++++||+++||||+++|++++.+++.+++++++.. |.+.+
T Consensus       189 G~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~  231 (287)
T PRK08788        189 GKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR  231 (287)
T ss_pred             CCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH
Confidence            99999999999999999999999999999999999976 44333

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-41  Score=271.28  Aligned_cols=176  Identities=20%  Similarity=0.246  Sum_probs=160.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.++  +++++||++|. |++||+|.|++++... ......+...+.+++.++.++||||||+|||+|+|+
T Consensus        30 ~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~Gg  105 (229)
T PRK06213         30 MIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSG-AQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAK  105 (229)
T ss_pred             HHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcc-hHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHH
Confidence            5789999999988  46799999998 6999999999987543 333445566778888999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        81 G~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      |++|+++||+||++++ ++|++||+++|++|+               .++..++++++|...+++++++|++++++||++
T Consensus       106 G~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~---------------~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~  170 (229)
T PRK06213        106 GAFLLLSADYRIGVHGPFKIGLNEVAIGMTMP---------------HAAIELARDRLTPSAFQRAVINAEMFDPEEAVA  170 (229)
T ss_pred             HHHHHHhCCeeeEecCCcEEECchhhhCCcCC---------------hHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHH
Confidence            9999999999999999 999999999999887               777888899999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       171 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  206 (229)
T PRK06213        171 AGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATK  206 (229)
T ss_pred             CCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            999999999999999999999999999999999877

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=4.9e-41  Score=273.24  Aligned_cols=173  Identities=27%  Similarity=0.428  Sum_probs=152.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.++.||++|+|||||. |++||+|.|++++..   .....+...+.+++.++.++||||||+|||+|+||
T Consensus        28 ~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~---~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  103 (251)
T TIGR03189        28 MIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMP---DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGG  103 (251)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCc---hhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeH
Confidence            57899999999999999999999998 689999999987531   11122344566788889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               + +++++++++|..++++++++|++++++||+++
T Consensus       104 G~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~  167 (251)
T TIGR03189       104 GLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP---------------A-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARI  167 (251)
T ss_pred             HHHHHHhCCEEEEcCCCEEeCchhhcCCCCC---------------c-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHC
Confidence            9999999999999999999999999999987               5 46789999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHH-HHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEI-AQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~-a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|+++  +++.++ +++++++||.+++.+|
T Consensus       168 Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K  201 (251)
T TIGR03189       168 GLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAV  201 (251)
T ss_pred             CCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999998643  566665 7999999999998876

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-41  Score=275.81  Aligned_cols=177  Identities=29%  Similarity=0.471  Sum_probs=157.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhH---HH----HHHHHHHHHHHHHcCCCcEEEEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---HF----YVNTLRSTFSFLEALPIPTIAVI   73 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~kp~Iaav   73 (195)
                      |+++|.++++.++.|+++|+|||+|. |++||+|.|++++........   ..    ....+.+++.++.++||||||+|
T Consensus        31 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav  109 (262)
T PRK07509         31 MFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAAL  109 (262)
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            57899999999999999999999998 689999999998754321111   11    12234556677889999999999


Q ss_pred             CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329           74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS  153 (195)
Q Consensus        74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~  153 (195)
                      ||+|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++
T Consensus       110 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~~g~~~a~~l~ltg~~~~  174 (262)
T PRK07509        110 EGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPD---------------MAGTVSLRGLVRKDVARELTYTARVFS  174 (262)
T ss_pred             CCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence            99999999999999999999999999999999999999               999999999999999999999999999


Q ss_pred             HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||+++||||+++++  +.+++.++++++++.||.+++.+|
T Consensus       175 a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~~~K  214 (262)
T PRK07509        175 AEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIAAAK  214 (262)
T ss_pred             HHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999854  678999999999999999998876

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=1e-40  Score=277.87  Aligned_cols=180  Identities=28%  Similarity=0.450  Sum_probs=157.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCC------CceEeccCcchhhcC-------Ch-h--hHHHHH-HHHHHHHHHHH
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVP------KVFCAGADLKERRQM-------SP-S--EIHFYV-NTLRSTFSFLE   63 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~------~~F~~G~Dl~~~~~~-------~~-~--~~~~~~-~~~~~~~~~~~   63 (195)
                      |+.+|.++++.++.|+++++|||||.|+      ++||+|.|++++...       +. .  ...... ....++...+.
T Consensus        53 ~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  132 (302)
T PRK08321         53 TVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIR  132 (302)
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999842      699999999875321       00 0  000111 11234566788


Q ss_pred             cCCCcEEEEECCcccchhHHHhhhCCEEEEe-CCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHH
Q 029329           64 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVA  142 (195)
Q Consensus        64 ~~~kp~Iaav~G~a~ggG~~la~~~D~~va~-~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a  142 (195)
                      ++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+               +++++++++++|..++
T Consensus       133 ~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~---------------~~~~~~L~r~vG~~~A  197 (302)
T PRK08321        133 FMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG---------------GYGSAYLARQVGQKFA  197 (302)
T ss_pred             cCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC---------------chHHHHHHHHhCHHHH
Confidence            9999999999999999999999999999999 68999999999999998               8899999999999999


Q ss_pred             HHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          143 KDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       143 ~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++++++|++++|+||+++||||+++|++++.+++.+++++|++.+|.+++.+|
T Consensus       198 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  250 (302)
T PRK08321        198 REIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLK  250 (302)
T ss_pred             HHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=8.4e-41  Score=282.49  Aligned_cols=179  Identities=26%  Similarity=0.515  Sum_probs=159.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.++++.++.||++|+|||||.|+++||+|.|++++....    ......++....+++.++.++|||+||+|||+
T Consensus        31 m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~  110 (342)
T PRK05617         31 MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGI  110 (342)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence            67899999999999999999999998558999999999875321    11111344445577888999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|++++++++.| ..+++++++|++++++|
T Consensus       111 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~---------------~g~~~~L~r~~g-~~a~~llltG~~i~A~e  174 (342)
T PRK05617        111 VMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPD---------------VGGTYFLSRAPG-ALGTYLALTGARISAAD  174 (342)
T ss_pred             EEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCC---------------ccceeEehhccc-HHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999               999999999877 68999999999999999


Q ss_pred             HHhcCccceecCCChHHHH-------------------------------------------------------------
Q 029329          157 AMSLGLVNYYVPAGQAQLK-------------------------------------------------------------  175 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~-------------------------------------------------------------  175 (195)
                      |+++||||+++|++++.+.                                                             
T Consensus       175 A~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~  254 (342)
T PRK05617        175 ALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGE  254 (342)
T ss_pred             HHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHH
Confidence            9999999999999888776                                                             


Q ss_pred             -HHHHHHHHhhcCHHHHHhhC
Q 029329          176 -ALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       176 -a~~~a~~~~~~~~~~~~~~k  195 (195)
                       +.+++++|+++||.+++.+|
T Consensus       255 ~a~~~a~~i~~~sp~a~~~~k  275 (342)
T PRK05617        255 FAAKTADTLRSRSPTSLKVTL  275 (342)
T ss_pred             HHHHHHHHHHhCCcHHHHHHH
Confidence             88999999999999999876

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-41  Score=261.54  Aligned_cols=180  Identities=54%  Similarity=0.848  Sum_probs=174.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.+..|+.+|+|++++.-++.||+|.||++..++++++...|++.++.++..+.++|.||||+++|.++||
T Consensus        59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG  138 (291)
T KOG1679|consen   59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG  138 (291)
T ss_pred             HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence            67899999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++++++||+|+++.+++++++|.+++++|+               .|++++++|.+|.+.++|+++|++.+++.||..+
T Consensus       139 GLElALACDiRva~s~akmGLvET~laiiPG---------------aGGtQRLpR~vg~alaKELIftarvl~g~eA~~l  203 (291)
T KOG1679|consen  139 GLELALACDIRVAASSAKMGLVETKLAIIPG---------------AGGTQRLPRIVGVALAKELIFTARVLNGAEAAKL  203 (291)
T ss_pred             chhhhhhccceehhhhccccccccceeeecC---------------CCccchhHHHHhHHHHHhHhhhheeccchhHHhc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCC----hHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAG----QAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~----~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+++...    ...+.++++|++|.-+.|.++++.|
T Consensus       204 GlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aK  242 (291)
T KOG1679|consen  204 GLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAK  242 (291)
T ss_pred             chHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHH
Confidence            9999999764    5678899999999999999999876

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-40  Score=272.34  Aligned_cols=176  Identities=23%  Similarity=0.393  Sum_probs=157.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--Chhh-HHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++++.++.|+++|+|||+|. |+.||+|.|++++...  ++.. ...+...+.+++.++..+||||||+|||+|
T Consensus        34 ~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  112 (260)
T PRK07827         34 LVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHV  112 (260)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence            57899999999999999999999998 6899999999987542  2221 223455677888899999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|++++++++. ..++++++++|++++++||
T Consensus       113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA  176 (260)
T PRK07827        113 RAGGFGLVGACDIVVAGPESTFALTEARIGVAPA---------------IISLTLLPRLS-PRAAARYYLTGEKFGAAEA  176 (260)
T ss_pred             ecchhhHHHhCCEEEEcCCCEEeCcccccCCCCC---------------cccchhHHhhh-HHHHHHHHHhCCccCHHHH
Confidence            9999999999999999999999999999999999               99999999875 5689999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||++++  ++.+++.++++++++.||.+++.+|
T Consensus       177 ~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K  212 (260)
T PRK07827        177 ARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESK  212 (260)
T ss_pred             HHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999974  5889999999999999999999887

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-40  Score=274.68  Aligned_cols=177  Identities=30%  Similarity=0.469  Sum_probs=155.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-------------------hh---hHHHHHHHHHHH
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------------------PS---EIHFYVNTLRST   58 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-------------------~~---~~~~~~~~~~~~   58 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|++++....                   ..   ........+.++
T Consensus        32 ~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (288)
T PRK08290         32 MLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGM  110 (288)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence            57899999999999999999999998 68999999999763210                   00   011122345567


Q ss_pred             HHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc
Q 029329           59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG  138 (195)
Q Consensus        59 ~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig  138 (195)
                      +.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |+               . +.+++++++|
T Consensus       111 ~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~---------------~-~~~~l~~~iG  173 (288)
T PRK08290        111 CRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG---------------V-EYFAHPWELG  173 (288)
T ss_pred             HHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc---------------c-hHHHHHHHhh
Confidence            77889999999999999999999999999999999999999999999998 44               3 3566789999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          139 KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       139 ~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +.++++++++|++++++||+++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus       174 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  230 (288)
T PRK08290        174 PRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTK  230 (288)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998876

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-40  Score=269.32  Aligned_cols=172  Identities=20%  Similarity=0.251  Sum_probs=155.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.++.|+++|+|||+|. |+.||+|.|++++....   ...+.+.+.+++..+.++||||||+|||+|+||
T Consensus        28 ~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~---~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  103 (248)
T PRK06072         28 MRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDF---AIDLRETFYPIIREIRFSDKIYISAINGVTAGA  103 (248)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhh---HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence            57899999999999999999999997 68999999999874321   123344566788889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|. ++++++++|++++++||+++
T Consensus       104 G~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~---------------~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~  167 (248)
T PRK06072        104 CIGIALSTDFKFASRDVKFVTAFQRLGLASD---------------TGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERW  167 (248)
T ss_pred             HHHHHHhCCEEEEcCCCEEecchhhcCcCCC---------------chHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHC
Confidence            9999999999999999999999999999999               8999999999997 89999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||++   +++.+++.++|+++++.||.+++.+|
T Consensus       168 Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K  199 (248)
T PRK06072        168 GLLKIS---EDPLSDAEEMANRISNGPFQSYIAAK  199 (248)
T ss_pred             CCcccc---chHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999964   46789999999999999999998876

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-40  Score=267.80  Aligned_cols=169  Identities=28%  Similarity=0.462  Sum_probs=152.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.+++++++.+ ++|+|||||. |++||+|.|+++...     ...+...+.+++.++.++||||||+|||+|+||
T Consensus        28 ~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg  100 (243)
T PRK07854         28 LCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDVY-----ADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA  100 (243)
T ss_pred             HHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccchh-----HHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence            578999999999865 9999999997 689999999985211     123345567788889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       101 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~  165 (243)
T PRK07854        101 GLQLAMACDLRVVAPEAYFQFPVAKYGIALD---------------NWTIRRLSSLVGGGRARAMLLGAEKLTAEQALAT  165 (243)
T ss_pred             HHHHHHhCCEEEEcCCCEEeccccccccCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHC
Confidence            9999999999999999999999999999999               8999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|++   + +++.++++++++.||.+++.+|
T Consensus       166 Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~~~K  196 (243)
T PRK07854        166 GMANRIGT---L-ADAQAWAAEIAGLAPLALQHAK  196 (243)
T ss_pred             CCcccccC---H-HHHHHHHHHHHhCCHHHHHHHH
Confidence            99999965   2 3899999999999999998876

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-40  Score=276.47  Aligned_cols=176  Identities=26%  Similarity=0.365  Sum_probs=154.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh-----------------------h--HHHHHHHH
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-----------------------E--IHFYVNTL   55 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~-----------------------~--~~~~~~~~   55 (195)
                      |+.+|.+++++++.|+++|+|||+|. |++||+|.|++++......                       .  ...+...+
T Consensus        38 m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (302)
T PRK08272         38 TPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRF  116 (302)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHHHHH
Confidence            67899999999999999999999998 6899999999987532110                       0  01234556


Q ss_pred             HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhh
Q 029329           56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPR  135 (195)
Q Consensus        56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~  135 (195)
                      ++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|.+|+               .   ..+++
T Consensus       117 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~---------------~---~~~~~  178 (302)
T PRK08272        117 VRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPA---------------T---GMWAY  178 (302)
T ss_pred             HHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCCh---------------H---HHHHH
Confidence            67788899999999999999999999999999999999999999999999865565               3   24677


Q ss_pred             hhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          136 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       136 ~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++|..++++++++|++++++||+++||||+++|++++.+++.++|++|+..||.+++.+|
T Consensus       179 ~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K  238 (302)
T PRK08272        179 RLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVK  238 (302)
T ss_pred             HhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999876

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1.3e-39  Score=272.57  Aligned_cols=179  Identities=24%  Similarity=0.339  Sum_probs=158.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.+++++++.|+++++|||||.++++||+|.|++++...   ++.....+.+.+++++.++..+||||||+|||+|
T Consensus        56 ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~A  135 (360)
T TIGR03200        56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMR  135 (360)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence            6789999999999999999999999854799999999987542   2233344555667788899999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++|+||
T Consensus       136 iGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~---------------~Ggt~rLprlvG~~rA~~llltGe~~sA~EA  200 (360)
T TIGR03200       136 IGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPI---------------GGATDFLPLMIGCEQAMVSGTLCEPWSAHKA  200 (360)
T ss_pred             eeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCC---------------ccHHHHHHHhhCHHHHHHHHHhCCcCcHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChH------------HHHHHHHHHHHhhcCHH--HHHhh
Q 029329          158 MSLGLVNYYVPAGQA------------QLKALEIAQEINQKVQS--VFRIL  194 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~------------~~~a~~~a~~~~~~~~~--~~~~~  194 (195)
                      +++||||+|+|++++            .+.+.++++.+...++.  ++++.
T Consensus       201 ~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  251 (360)
T TIGR03200       201 KRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAG  251 (360)
T ss_pred             HHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHH
Confidence            999999999999887            67777788888887766  44443

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-39  Score=270.93  Aligned_cols=175  Identities=21%  Similarity=0.286  Sum_probs=148.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcch-hhc----C--Ch--hhHHHH---HH---HHHHHHHHHHcC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE-RRQ----M--SP--SEIHFY---VN---TLRSTFSFLEAL   65 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~-~~~----~--~~--~~~~~~---~~---~~~~~~~~~~~~   65 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|+++ +..    .  +.  .....+   ..   .....+..+.++
T Consensus        33 ~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  111 (298)
T PRK12478         33 MPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRA  111 (298)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHHHhC
Confidence            57899999999999999999999998 689999999986 211    0  00  001111   01   112356678899


Q ss_pred             CCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccc-cccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHH
Q 029329           66 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL-AIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKD  144 (195)
Q Consensus        66 ~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~-G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~  144 (195)
                      ||||||+|||+|+|||++|+++||+||++++++|++||+++ |+.+.               .  +  +.+++|..++++
T Consensus       112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~---------------~--~--~~~~vG~~~A~~  172 (298)
T PRK12478        112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT---------------G--M--WLYRLSLAKVKW  172 (298)
T ss_pred             CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch---------------h--H--HHHHhhHHHHHH
Confidence            99999999999999999999999999999999999999997 87654               2  2  235699999999


Q ss_pred             HHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          145 IIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       145 l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++++|++++|+||+++||||+|+|++++.+++.++|++++..||.+++.+|
T Consensus       173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  223 (298)
T PRK12478        173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQK  223 (298)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.3e-39  Score=278.82  Aligned_cols=177  Identities=25%  Similarity=0.461  Sum_probs=158.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.++|+.++.|+++++|||+|. |++||+|.|++++....    ......++...+++..++.++|||+||+|||+
T Consensus        65 m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~  143 (401)
T PLN02157         65 MGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGV  143 (401)
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCe
Confidence            68899999999999999999999998 58999999999875321    11223344445557778999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|++++++|++|. .++++++||++++++|
T Consensus       144 a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd---------------~G~s~~L~rl~G~-~a~~L~LTG~~i~A~e  207 (401)
T PLN02157        144 TMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPD---------------AGASFNLSHLPGR-LGEYLGLTGLKLSGAE  207 (401)
T ss_pred             EeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCC---------------ccHHHHHHHhhhH-HHHHHHHcCCcCCHHH
Confidence            99999999999999999999999999999999999               9999999999996 7999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+++|++++ +++.+++++++..+|.+++.+|
T Consensus       208 A~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~~~k  245 (401)
T PLN02157        208 MLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVESCL  245 (401)
T ss_pred             HHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999998 6788999999999998887665

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.8e-39  Score=264.73  Aligned_cols=174  Identities=22%  Similarity=0.302  Sum_probs=151.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh-h-HHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-E-IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+++|.++++.++  +++|+||++|. |++||+|.|++++...... . .......+.+++.++.++||||||+|||+|+
T Consensus        32 ~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~  108 (255)
T PRK07112         32 LIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVN  108 (255)
T ss_pred             HHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEE
Confidence            5789999999998  36999999997 7899999999987542111 1 1112344567888899999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               ++ ..++++++|..++++++++|++++++||+
T Consensus       109 GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~---------------~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~  172 (255)
T PRK07112        109 AGGIGFVAASDIVIADETAPFSLSELLFGLIPA---------------CV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAF  172 (255)
T ss_pred             cchhHHHHcCCEEEEcCCCEEeCchhhhccCcc---------------hh-hHHHHHHhCHHHHHHHHHhCCcccHHHHH
Confidence            999999999999999999999999999999987               64 46799999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+++|+++.  .+.++++++++.+|.+++.+|
T Consensus       173 ~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K  207 (255)
T PRK07112        173 SWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYK  207 (255)
T ss_pred             HcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHH
Confidence            99999999997653  578899999999999999876

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.9e-39  Score=277.35  Aligned_cols=157  Identities=22%  Similarity=0.383  Sum_probs=138.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+.+|.++++.++.|++||+|||+|. |++||+|.|++++....  ......+....+.++.++.++|||+||+|||+|+
T Consensus        39 m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~  117 (379)
T PLN02874         39 VVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVM  117 (379)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEE
Confidence            67899999999999999999999998 68999999999875321  1222233334455677889999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||+.|+++||+||++++++|++||+++|++|+               .|+++++++++|. .++++++||++++++||+
T Consensus       118 GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~---------------~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~  181 (379)
T PLN02874        118 GGGAGLMVPMKFRVVTEKTVFATPEASVGFHTD---------------CGFSYILSRLPGH-LGEYLALTGARLNGKEMV  181 (379)
T ss_pred             ecHHHHHHhCCeEEEeCCeEEeccccccCcCCC---------------hhHHHHHHhhhHH-HHHHHHHcCCcccHHHHH
Confidence            999999999999999999999999999999999               9999999999885 899999999999999999


Q ss_pred             hcCccceecCCChHHH
Q 029329          159 SLGLVNYYVPAGQAQL  174 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~  174 (195)
                      ++||||+++|++++.+
T Consensus       182 ~~GLv~~vv~~~~l~~  197 (379)
T PLN02874        182 ACGLATHFVPSEKLPE  197 (379)
T ss_pred             HcCCccEEeCHHHHHH
Confidence            9999999999888755

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=3.8e-39  Score=260.36  Aligned_cols=178  Identities=22%  Similarity=0.400  Sum_probs=150.4

Q ss_pred             CHHHHHHHHHHhhcCCCcE-EEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSAN-VVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~-~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.+++++++.|++++ +||++|. |+.||+|.|++++...  .......+...+.+++.++.++||||||+|||+|
T Consensus        27 ~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a  105 (239)
T PLN02267         27 LIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHA  105 (239)
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence            5789999999999999976 6666776 7899999999987532  1222233455677788899999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeC-CceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHH-HHHHHcCCCCCHH
Q 029329           78 LGGGLEMALACDLRICGE-AALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVA-KDIIFTGRKVSGK  155 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~-~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a-~~l~l~g~~~~a~  155 (195)
                      +|||++|+++||+||+++ +++|++||.++|+.++               .++++++++++|..++ ++++++|++++++
T Consensus       106 ~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p---------------~~~~~~l~~~vG~~~a~~~llltG~~~~a~  170 (239)
T PLN02267        106 SAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLP---------------DYFMALLRAKIGSPAARRDVLLRAAKLTAE  170 (239)
T ss_pred             hHHHHHHHHHCCEEEecCCCCeEeccccccCCCCC---------------hHHHHHHHHHcChHHHHHHHHHcCCcCCHH
Confidence            999999999999999985 5899999999999733               4457789999999999 6999999999999


Q ss_pred             HHHhcCccceecCC-ChHHHHHHHHHHHHhhc--CHHHHHhh
Q 029329          156 DAMSLGLVNYYVPA-GQAQLKALEIAQEINQK--VQSVFRIL  194 (195)
Q Consensus       156 eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~--~~~~~~~~  194 (195)
                      ||+++||||+++|+ +++.+++.++|+++++.  ++.++..+
T Consensus       171 eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~  212 (239)
T PLN02267        171 EAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASI  212 (239)
T ss_pred             HHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHH
Confidence            99999999999985 68999999999999997  44444443

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.2e-38  Score=282.33  Aligned_cols=180  Identities=19%  Similarity=0.164  Sum_probs=158.3

Q ss_pred             CHHHHHHHHHHhhc-CCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC-Cccc
Q 029329            1 MLRGLKHAFETISE-DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~-d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~-G~a~   78 (195)
                      |+.+|.+++++++. |+++|+|||||.|++.||+|.|++.....+..........++.++.++.++||||||+|| |+|+
T Consensus       303 ~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~  382 (550)
T PRK08184        303 MARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCF  382 (550)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCcee
Confidence            57899999999986 799999999997325999999986432212111123334556678899999999999997 9999


Q ss_pred             chh-HHHhhhCCEEEEe-------CCceeecccccccccCCCCCccchhhhhhcccCCccchhhhh-hcHHHHHHH--HH
Q 029329           79 GGG-LEMALACDLRICG-------EAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRL-VGKSVAKDI--IF  147 (195)
Q Consensus        79 ggG-~~la~~~D~~va~-------~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~-ig~~~a~~l--~l  147 (195)
                      ||| ++|+++||+||++       ++++|++||+++|++|+               +|++++++++ +|..+++++  ++
T Consensus       383 GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~---------------~gg~~~L~r~~vG~~~A~~~~l~~  447 (550)
T PRK08184        383 AGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPM---------------VNGLSRLARRFYGEPDPLAAVRAK  447 (550)
T ss_pred             hhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCC---------------CCcHHHhHHHhcChHHHHHHHHHH
Confidence            999 9999999999999       99999999999999999               9999999998 699999997  58


Q ss_pred             cCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          148 TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       148 ~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +|++++++||+++||||+++|++++.+++.++|+++++.||.+++.+|
T Consensus       448 tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K  495 (550)
T PRK08184        448 IGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTGME  495 (550)
T ss_pred             hCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=2e-38  Score=280.24  Aligned_cols=179  Identities=18%  Similarity=0.173  Sum_probs=158.7

Q ss_pred             CHHHHHHHHHHhh-cCCCcEEEEEEeCCCCc-eEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEE-CCcc
Q 029329            1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKV-FCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI-DGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~-F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav-~G~a   77 (195)
                      |+.+|.+++++++ +|+++|+|||||. |+. ||+|.|++.....+...........++++.++..+|||+||+| ||+|
T Consensus       299 ~~~~L~~a~~~~~~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a  377 (546)
T TIGR03222       299 LARELDDAILHLRTNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSC  377 (546)
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeE
Confidence            5789999999998 5699999999997 566 9999999843222221222333445668889999999999999 8999


Q ss_pred             cchh-HHHhhhCCEEEE-------eCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh-cHHHH--HHHH
Q 029329           78 LGGG-LEMALACDLRIC-------GEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV-GKSVA--KDII  146 (195)
Q Consensus        78 ~ggG-~~la~~~D~~va-------~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i-g~~~a--~~l~  146 (195)
                      +||| ++|+++||++|+       +++++|++||+++|++|+               +|+++++++++ |..++  ++++
T Consensus       378 ~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~---------------~gg~~~L~~~v~G~~~a~~~~~~  442 (546)
T TIGR03222       378 FAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPM---------------VNGLSRLATRFYAEPAPVAAVRD  442 (546)
T ss_pred             eHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCC---------------cCcHHHHHHHhcCchhHHHHHHH
Confidence            9999 999999999999       899999999999999999               99999999998 98888  5699


Q ss_pred             HcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          147 FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       147 l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++|++++++||+++|||++++|++++.+++.++|+++++.||.+++.+|
T Consensus       443 ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  491 (546)
T TIGR03222       443 KIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTGLE  491 (546)
T ss_pred             HhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999876

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-39  Score=253.61  Aligned_cols=179  Identities=29%  Similarity=0.563  Sum_probs=164.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-----C-------hhhHHHHHHHHHHHHHHHHcCCCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-----S-------PSEIHFYVNTLRSTFSFLEALPIP   68 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~kp   68 (195)
                      ||.|+.++++.+.+||++|+|||+|. |+.||+|+|++.+...     +       .....+++..+++.+..|.+||||
T Consensus        50 ~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKP  128 (292)
T KOG1681|consen   50 FWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKP  128 (292)
T ss_pred             HHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChh
Confidence            68999999999999999999999998 8999999998876432     1       123567788899999999999999


Q ss_pred             EEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc-HHHHHHHHH
Q 029329           69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG-KSVAKDIIF  147 (195)
Q Consensus        69 ~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig-~~~a~~l~l  147 (195)
                      +|+++||+|+|+|+.|..+||+|++++++.|+..|+.+|+..+               .|...++|+.+| .++++++.+
T Consensus       129 VIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaAD---------------vGTL~RlpkvVGn~s~~~elaf  193 (292)
T KOG1681|consen  129 VIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAAD---------------VGTLNRLPKVVGNQSLARELAF  193 (292)
T ss_pred             HHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhc---------------hhhHhhhhHHhcchHHHHHHHh
Confidence            9999999999999999999999999999999999999999999               999999999999 899999999


Q ss_pred             cCCCCCHHHHHhcCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          148 TGRKVSGKDAMSLGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       148 ~g~~~~a~eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |++.++|.||++.|||.+|+|+ +++...+..+|+.|+.++|.+..-+|
T Consensus       194 Tar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK  242 (292)
T KOG1681|consen  194 TARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTK  242 (292)
T ss_pred             hhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechH
Confidence            9999999999999999999998 67889999999999999998876554

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=3.5e-38  Score=288.18  Aligned_cols=170  Identities=37%  Similarity=0.594  Sum_probs=156.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.++++.++.|+++|+|||||. |++||+|.|++++...   +......+...+++++.++.++|||+||+|||+|
T Consensus        35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a  113 (715)
T PRK11730         35 TLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYA  113 (715)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence            57899999999999999999999998 6899999999987542   2222334556677888899999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++|+||
T Consensus       114 ~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~---------------~g~~~~L~rlvG~~~A~~llltG~~~~A~eA  178 (715)
T PRK11730        114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPG---------------FGGTVRLPRLIGADNALEWIAAGKDVRAEDA  178 (715)
T ss_pred             ehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC---------------chHHHHHHHhcCHHHHHHHHHcCCcCCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhc
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQK  186 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~  186 (195)
                      +++||||+++|++++.+++.++|++++..
T Consensus       179 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~  207 (715)
T PRK11730        179 LKVGAVDAVVAPEKLQEAALALLKQAIAG  207 (715)
T ss_pred             HHCCCCeEecCHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999976

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=6e-38  Score=267.64  Aligned_cols=176  Identities=21%  Similarity=0.414  Sum_probs=153.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-Ch---hhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.++|+.++.|+++++|||+|. |++||+|.|++++... ..   .....++.....+..++.++|||+||++||+
T Consensus        37 m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~  115 (381)
T PLN02988         37 MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGI  115 (381)
T ss_pred             HHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCe
Confidence            68899999999999999999999998 5899999999987532 11   1122333333445667889999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||+.|+++||+||++++++|++||+++|++|+               .|++++++|++|. .++++++||++++++|
T Consensus       116 a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd---------------~G~s~~L~rl~G~-~~~~l~LTG~~i~a~e  179 (381)
T PLN02988        116 VMGGGAGVSVHGRFRIATENTVFAMPETALGLFPD---------------VGASYFLSRLPGF-FGEYVGLTGARLDGAE  179 (381)
T ss_pred             EeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCC---------------ccHHHHHHHHHHH-HHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999               9999999999997 6899999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhh
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRIL  194 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~  194 (195)
                      |+++||+|+++|++++.+.+.+++ +++..+|.++...
T Consensus       180 A~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~  216 (381)
T PLN02988        180 MLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTI  216 (381)
T ss_pred             HHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHH
Confidence            999999999999999999888888 7777777776544

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=2.7e-37  Score=241.70  Aligned_cols=167  Identities=46%  Similarity=0.798  Sum_probs=156.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhh--HHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE--IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+++|.++++.+++|+++++|||||. ++.||+|.|++++.......  ...+.+.+++++.++..+|||+|+++||+|.
T Consensus        27 ~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~  105 (195)
T cd06558          27 MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAAL  105 (195)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence            57899999999999999999999998 89999999999987654433  5677889999999999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |+|+.++++||+||++++++|++||+++|+.|+               .|.++++++++|...+++++++|++++++||+
T Consensus       106 g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~---------------~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~  170 (195)
T cd06558         106 GGGLELALACDIRIAAEDAKFGLPEVKLGLVPG---------------GGGTQRLPRLVGPARARELLLTGRRISAEEAL  170 (195)
T ss_pred             cHHHHHHHhCCEEEecCCCEEechhhhcCCCCC---------------CcHHHHHHHHhCHHHHHHHHHcCCccCHHHHH
Confidence            999999999999999999999999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHH
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEI  183 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~  183 (195)
                      ++||||++++.+++.+++.++++++
T Consensus       171 ~~Glv~~~~~~~~l~~~a~~~a~~~  195 (195)
T cd06558         171 ELGLVDEVVPDEELLAAALELARRL  195 (195)
T ss_pred             HcCCCCeecChhHHHHHHHHHHhhC
Confidence            9999999999999999999988763

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=3e-37  Score=282.00  Aligned_cols=167  Identities=41%  Similarity=0.700  Sum_probs=152.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.+++++++.|+++|+|||+|.+++.||+|.|++++.... ......+...+++++.++.++||||||+|||+|+|
T Consensus        35 ~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G  114 (708)
T PRK11154         35 FAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLG  114 (708)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeec
Confidence            57899999999999999999999987668999999999875432 22233445566778899999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCC--ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           80 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        80 gG~~la~~~D~~va~~~--a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      ||++|+++||+||++++  ++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       115 gG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~---------------~gg~~~L~r~vG~~~A~~llltG~~i~a~eA  179 (708)
T PRK11154        115 GGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG---------------SGGTQRLPRLIGVSTALDMILTGKQLRAKQA  179 (708)
T ss_pred             hHHHHHHhCCEEEEeCCCCceEeCccccCCCCCC---------------ccHHhHHHhhcCHHHHHHHHHhCCcCCHHHH
Confidence            99999999999999997  489999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHH
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQE  182 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~  182 (195)
                      +++||||+++|++++.+++.++|++
T Consensus       180 ~~~GLv~~vv~~~~l~~~a~~~A~~  204 (708)
T PRK11154        180 LKLGLVDDVVPHSILLEVAVELAKK  204 (708)
T ss_pred             HHCCCCcEecChHHHHHHHHHHHHh
Confidence            9999999999999999999999988

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=7.4e-37  Score=278.94  Aligned_cols=177  Identities=39%  Similarity=0.633  Sum_probs=156.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++|++++.|+++|+|||++..+++||+|.|++++... +......+....++++.++.++||||||+|||+|+|
T Consensus        30 ~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~G  109 (699)
T TIGR02440        30 FADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLG  109 (699)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence            5789999999999999999999754347899999999987542 222333445567788889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCC--ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           80 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        80 gG~~la~~~D~~va~~~--a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      ||++|+++||+||++++  ++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       110 gG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~---------------~g~~~~L~r~vG~~~A~~llltG~~~~a~eA  174 (699)
T TIGR02440       110 GGLELALACHSRVCSDDDKTVLGLPEVQLGLLPG---------------SGGTQRLPRLIGVSTALDMILTGKQLRAKQA  174 (699)
T ss_pred             HHHHHHHhCCEEEEcCCCCcEEechhhcccCCCC---------------ccHHHHHHHhcCHHHHHHHHHcCCcCCHHHH
Confidence            99999999999999986  799999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHH-------------HHhhcCHHHHH
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQ-------------EINQKVQSVFR  192 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~-------------~~~~~~~~~~~  192 (195)
                      +++||||+++|++++.+++.++|+             ++++.+|.+.+
T Consensus       175 ~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~  222 (699)
T TIGR02440       175 LKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA  222 (699)
T ss_pred             HhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHH
Confidence            999999999999999999999998             67777666644

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=8.9e-37  Score=278.64  Aligned_cols=169  Identities=38%  Similarity=0.610  Sum_probs=154.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.+++++++.|+++|+|||+|. ++.||+|.|++++...   +......+.+..++++.++.++||||||+|||+|
T Consensus        35 ~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a  113 (714)
T TIGR02437        35 TLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIA  113 (714)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence            57899999999999999999999998 6899999999988542   2223334555677888999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       114 lGGGleLalacD~ria~~~a~fglPEv~lGl~Pg---------------~Ggt~rL~rliG~~~A~~llltG~~~~A~eA  178 (714)
T TIGR02437       114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPG---------------FGGTVRLPRVIGADNALEWIASGKENRAEDA  178 (714)
T ss_pred             ecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhh
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                      +++||||+++|++++.+++.++++++..
T Consensus       179 ~~~GLvd~vv~~~~l~~~a~~~a~~~~~  206 (714)
T TIGR02437       179 LKVGAVDAVVTADKLGAAALQLLKDAIN  206 (714)
T ss_pred             HHCCCCcEeeChhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999988554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.5e-36  Score=259.97  Aligned_cols=173  Identities=23%  Similarity=0.420  Sum_probs=152.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC----ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.++|+.++.|+++++|||+|+ |++||+|.|++.+...    +......++...+++...+.++|||+||++||+
T Consensus        70 m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~  148 (407)
T PLN02851         70 MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGI  148 (407)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence            68899999999999999999999998 5899999999987542    123344566677788888999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||+.|+++||+||++++++|++||+++|++|+               .|++++++|+.|.. ++++++||++++++|
T Consensus       149 amGGG~gLal~~D~rVate~a~famPE~~iGl~Pd---------------vG~s~~L~rl~g~~-g~~L~LTG~~i~a~e  212 (407)
T PLN02851        149 TMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPD---------------AGASYYLSRLPGYL-GEYLALTGQKLNGVE  212 (407)
T ss_pred             EeeHHHHHHHhCCEEEEeCCceEecchhccCCCCC---------------ccHHHHHHHhcCHH-HHHHHHhCCcCCHHH
Confidence            99999999999999999999999999999999999               99999999999984 999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHH
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF  191 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~  191 (195)
                      |+++||+|+++|++++ +.+.+.+.++...++.++
T Consensus       213 A~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~  246 (407)
T PLN02851        213 MIACGLATHYCLNARL-PLIEERLGKLLTDDPAVI  246 (407)
T ss_pred             HHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHH
Confidence            9999999999999887 667777777766555443

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.7e-36  Score=267.95  Aligned_cols=174  Identities=26%  Similarity=0.354  Sum_probs=150.3

Q ss_pred             CHHHHHHHHHHhh-cCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHH---HHH-HHHHHHHHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH---FYV-NTLRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      |+.+|.++|++++ .|+++|+|||||.++++||+|.|++++.........   .+. .....+...+.++||||||+|||
T Consensus        49 ~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG  128 (546)
T TIGR03222        49 VDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNG  128 (546)
T ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            5789999999999 799999999998757899999999987432111111   111 11233455677899999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCC--ceeeccccc-ccccCCCCCccchhhhhhcccCCccchhh--hhhcHHHHHHHHHcCC
Q 029329           76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGCSDRSLSHVILASDRAGGTQRLP--RLVGKSVAKDIIFTGR  150 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~--a~~~~~e~~-~G~~p~~~~~~~~~~~~~~~~~g~~~~l~--~~ig~~~a~~l~l~g~  150 (195)
                      +|+|||++|+++||+||++++  ++|++||++ +|++|+               +|+++++.  +.+|..++++++++|+
T Consensus       129 ~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~---------------~gg~~~l~~~~~vg~~~A~~llltG~  193 (546)
T TIGR03222       129 TCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG---------------TGGLTRVTDKRRVRRDHADIFCTIEE  193 (546)
T ss_pred             EeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc---------------cchhhhccccchhCHHHHHHHHHcCC
Confidence            999999999999999999987  799999997 999999               88888887  6999999999999999


Q ss_pred             CCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHH
Q 029329          151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQS  189 (195)
Q Consensus       151 ~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~  189 (195)
                      +++++||+++||||+++|++++.+++.++|+++++.||.
T Consensus       194 ~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~  232 (546)
T TIGR03222       194 GVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR  232 (546)
T ss_pred             CccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999998874

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=3e-36  Score=267.06  Aligned_cols=174  Identities=28%  Similarity=0.385  Sum_probs=150.5

Q ss_pred             CHHHHHHHHHHhh-cCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHH---HHH-HHHHHHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFY---VNT-LRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      |+.+|.+++++++ +|+++|+|||||.++++||+|.|++.+..........+   ... ...+...+.++||||||+|||
T Consensus        53 m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG  132 (550)
T PRK08184         53 VDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNG  132 (550)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            5789999999999 78999999999976789999999998754221111111   111 122445677899999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCC--ceeeccccc-ccccCCCCCccchhhhhhcccCCccchhh--hhhcHHHHHHHHHcCC
Q 029329           76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGCSDRSLSHVILASDRAGGTQRLP--RLVGKSVAKDIIFTGR  150 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~--a~~~~~e~~-~G~~p~~~~~~~~~~~~~~~~~g~~~~l~--~~ig~~~a~~l~l~g~  150 (195)
                      +|+|||++|+++|||||++++  ++|++||++ +|++|+               +|+++++.  +++|..++++++++|+
T Consensus       133 ~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~---------------~gg~~rl~~~~~vg~~~A~~llltG~  197 (550)
T PRK08184        133 TCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPG---------------TGGLTRVTDKRKVRRDLADIFCTIEE  197 (550)
T ss_pred             EeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCC---------------cchHHHhhhhhhcCHHHHHHHHHhCC
Confidence            999999999999999999987  899999997 999999               88888888  7899999999999999


Q ss_pred             CCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHH
Q 029329          151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQS  189 (195)
Q Consensus       151 ~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~  189 (195)
                      +++++||+++||||+++|++++.+++.++|++|+++||.
T Consensus       198 ~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~  236 (550)
T PRK08184        198 GVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR  236 (550)
T ss_pred             cccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999998874

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.2e-35  Score=271.92  Aligned_cols=169  Identities=34%  Similarity=0.598  Sum_probs=149.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEE-EEEeCCCCceEeccCcchhhcC-ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVV-MIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~v-vl~g~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+.+|.+++++++.|+++|++ |++|. +++||+|.|++++... +......+....++++.++.++||||||+|||+|+
T Consensus        42 ~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~  120 (737)
T TIGR02441        42 LFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCL  120 (737)
T ss_pred             HHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence            578999999999999999975 45776 7899999999998642 23334455567788899999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCC--ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           79 GGGLEMALACDLRICGEA--ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~--a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |||++|+++||+||++++  ++|++||+++|++|+               +|++++++|++|..++++++++|++++++|
T Consensus       121 GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg---------------~Ggt~rLprliG~~~A~~l~ltG~~i~a~e  185 (737)
T TIGR02441       121 GGGLELALACHYRIATKDRKTLLGLPEVMLGLLPG---------------AGGTQRLPKLTGVPAALDMMLTGKKIRADR  185 (737)
T ss_pred             cHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCC---------------ccHhhhHHHhhCHHHHHHHHHcCCcCCHHH
Confidence            999999999999999998  589999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCC-------------ChHHHHHHHHHHHHhh
Q 029329          157 AMSLGLVNYYVPA-------------GQAQLKALEIAQEINQ  185 (195)
Q Consensus       157 A~~~Glvd~v~~~-------------~~~~~~a~~~a~~~~~  185 (195)
                      |+++||||+|+|+             +++.+.|.+++++++.
T Consensus       186 A~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~  227 (737)
T TIGR02441       186 AKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLAN  227 (737)
T ss_pred             HHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhc
Confidence            9999999999987             4477888888877654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=8.9e-34  Score=224.59  Aligned_cols=179  Identities=20%  Similarity=0.365  Sum_probs=162.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh-------hHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-------EIHFYVNTLRSTFSFLEALPIPTIAVI   73 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~kp~Iaav   73 (195)
                      |+.++.++|+.+.+|+++..++++|+ |++||+|.|+..+......       ...++...+......+..+|||+||.|
T Consensus        36 ~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~v  114 (266)
T KOG0016|consen   36 DYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALV  114 (266)
T ss_pred             HHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            46789999999999999988888887 8999999999987643221       122333444557888999999999999


Q ss_pred             CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329           74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS  153 (195)
Q Consensus        74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~  153 (195)
                      ||+++|.|..+...||++||+|+++|..|+.++|..|.               ++.++.+++++|...+.|+++.|++++
T Consensus       115 NGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PE---------------G~Ss~t~p~imG~~~A~E~ll~~~klt  179 (266)
T KOG0016|consen  115 NGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPE---------------GCSSVTLPKIMGSASANEMLLFGEKLT  179 (266)
T ss_pred             cCCccchhhHHhhhhheEEeccceEEeccchhcCCCCC---------------cceeeeehHhhchhhHHHHHHhCCccc
Confidence            99999999999999999999999999999999999999               999999999999999999999999999


Q ss_pred             HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+||.+.|||++++|.+++.++++..++++++.+|.+++..|
T Consensus       180 A~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K  221 (266)
T KOG0016|consen  180 AQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMK  221 (266)
T ss_pred             HHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            999999999999999999999999999999999999998776

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=3.4e-34  Score=221.59  Aligned_cols=177  Identities=28%  Similarity=0.515  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeC--CCCceEeccCcchhhcC----ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECC
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSS--VPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~--~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      ..|+.+++..+..|++|.+|++||+  |+.+||+|.|-+-....    +.+....  -.+.++-+.|+.+||||||.|+|
T Consensus        48 V~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G  125 (282)
T COG0447          48 VDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAG  125 (282)
T ss_pred             HHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc--cchhhHHHHHHhCCcceEEEEee
Confidence            4689999999999999999999975  78999999998765431    1111111  12334555778899999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      +++|||-.|-+.||..||+++++|+....++|-+-+               +.++.+|.|.+|..+|+|+.+.++.++|+
T Consensus       126 ~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~---------------G~Gs~ylar~VGqKkArEIwfLcR~Y~A~  190 (282)
T COG0447         126 YAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDG---------------GYGSSYLARIVGQKKAREIWFLCRQYDAE  190 (282)
T ss_pred             EeccCccEEEEEeeeeeehhcchhcCCCCCcccccC---------------cccHHHHHHHhhhhhhHHhhhhhhhccHH
Confidence            999999999999999999999999999999998887               78899999999999999999999999999


Q ss_pred             HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++|+||.|+|.++++++..+|++++.++||.++|++|
T Consensus       191 eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK  230 (282)
T COG0447         191 EALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLK  230 (282)
T ss_pred             HHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            9999999999999999999999999999999999999987

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=99.97  E-value=3.4e-30  Score=197.87  Aligned_cols=178  Identities=26%  Similarity=0.408  Sum_probs=158.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhh-HHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.+.|.....+.++|+|||+.. |+.||+|.||+++...+..+ ..+.++...+.+..|++.|.|+|+-|||++.+
T Consensus        60 M~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaA  138 (287)
T KOG1682|consen   60 MMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAA  138 (287)
T ss_pred             HHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhh
Confidence            67788888888888899999999997 79999999999997755333 44667788899999999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      +|+.|..+||++|++++++|..|-..+|++-.               .- -..+.|.++...+.+|++||+|++++||+.
T Consensus       139 AGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCS---------------TP-GvAlaRavpRkva~~ML~Tg~Pi~~eeAl~  202 (287)
T KOG1682|consen  139 AGCQLVASCDMVVATKNSKFSTPGAGVGLFCS---------------TP-GVALARAVPRKVAAYMLMTGLPITGEEALI  202 (287)
T ss_pred             ccceEEEeeeEEEEecCccccCCCCceeeEec---------------Cc-chhHhhhcchhHHHHHHHhCCCCchHHHHH
Confidence            99999999999999999999999999998653               11 134788999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      .|||++++|.+++..++++++.+|.+.+...+...|
T Consensus       203 sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk  238 (287)
T KOG1682|consen  203 SGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGK  238 (287)
T ss_pred             hhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999999999999999988776544

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.95  E-value=3e-27  Score=194.77  Aligned_cols=175  Identities=26%  Similarity=0.486  Sum_probs=153.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhc----CChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |...+-..|..++.++.+++||+.|+++++||+|.|+.....    ........++..-+.+...+.++.||.||.++|.
T Consensus        66 Mv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGI  145 (401)
T KOG1684|consen   66 MVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGI  145 (401)
T ss_pred             HHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeece
Confidence            667788899999999999999999999999999999875532    2344667888888999999999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      ++|||+.|+...-||||++++.|.+||..+|++|+               .|++++++|+.| ....++.+||+++++.|
T Consensus       146 TMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPD---------------VG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD  209 (401)
T KOG1684|consen  146 TMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPD---------------VGASYFLSRLPG-YLGLYLGLTGQRLSGAD  209 (401)
T ss_pred             eecCCcceeecceeEEeeccceecccccccccccC---------------ccceeehhhCcc-HHHHhhhhccceecchH
Confidence            99999999999999999999999999999999999               999999999988 68999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHH
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF  191 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~  191 (195)
                      |+..||.++.||++.+..--.++...+..-|...+
T Consensus       210 ~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I  244 (401)
T KOG1684|consen  210 ALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVI  244 (401)
T ss_pred             HHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHH
Confidence            99999999999998876544455545555444443

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.90  E-value=2.7e-23  Score=160.79  Aligned_cols=150  Identities=16%  Similarity=0.133  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      +.+|.++++++++|+++|+|||++     +|.|.|+...            ..+.+.+..+.+++|||||+++|.|.|+|
T Consensus        24 ~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~------------~~~~~~i~~~~~~~kpVia~v~G~a~g~g   86 (177)
T cd07014          24 GDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS------------EVIRAELAAARAAGKPVVASGGGNAASGG   86 (177)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCchhHHH
Confidence            578999999999999999999987     4778777542            34556777888899999999999999999


Q ss_pred             HHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhh--hcHHHHHHHHHcCCCCCHHHHHh
Q 029329           82 LEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRL--VGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        82 ~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~--ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      +.|+++||++++++++.|+.+.+..+..+.     ....+..-+  -....+++.  +.....++++..|.+++++||++
T Consensus        87 ~~la~a~D~i~a~~~a~~~~~G~~~~~~~~-----~~~l~~~~~--~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~  159 (177)
T cd07014          87 YWISTPANYIVANPSTLVGSIGIFGVQLAD-----QLSIENGYK--RFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKA  159 (177)
T ss_pred             HHHHHhCCEEEECCCCeEEEechHhhHHHH-----HHHHHHHHH--HHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHH
Confidence            999999999999999999998776653221     000000000  001123333  34778899999999999999999


Q ss_pred             cCccceecCCChHHHH
Q 029329          160 LGLVNYYVPAGQAQLK  175 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~  175 (195)
                      .||||++.+.+++.++
T Consensus       160 ~GLVD~v~~~~e~~~~  175 (177)
T cd07014         160 NGLVDSLGSFDDAVAK  175 (177)
T ss_pred             cCCcccCCCHHHHHHH
Confidence            9999999988776543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.87  E-value=1.5e-21  Score=152.34  Aligned_cols=150  Identities=18%  Similarity=0.245  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC---Ccccc
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG   79 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~---G~a~g   79 (195)
                      ..+.++|+.+++|+ ++.|+|.=+     |.|.++               .....++.++..+|||||++++   |+|.|
T Consensus        16 ~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v---------------~~~~~i~~~l~~~~kPvia~v~~~~G~Aas   74 (187)
T cd07020          16 DYLERAIDQAEEGG-ADALIIELD-----TPGGLL---------------DSTREIVQAILASPVPVVVYVYPSGARAAS   74 (187)
T ss_pred             HHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCH---------------HHHHHHHHHHHhCCCCEEEEEecCCCCchh
Confidence            56788999998765 788888743     224443               2233566677889999999999   99999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCcc-chhhhhhcccCCccchhhhhhcH--HHHHHHHHcCCCCCHHH
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS-LSHVILASDRAGGTQRLPRLVGK--SVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~-~~~~~~~~~~~g~~~~l~~~ig~--~~a~~l~l~g~~~~a~e  156 (195)
                      +|+.++++||+++++++++|+.+++..+..+...+.. ........  ......+.+..|.  .++++++++|+.|+++|
T Consensus        75 gG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~e  152 (187)
T cd07020          75 AGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDA--VAYIRSLAELRGRNAEWAEKAVRESLSLTAEE  152 (187)
T ss_pred             HHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHcCCeecHHH
Confidence            9999999999999999999999998855433200000 00000000  1124467788886  68999999999999999


Q ss_pred             HHhcCccceecCCC-hHHHH
Q 029329          157 AMSLGLVNYYVPAG-QAQLK  175 (195)
Q Consensus       157 A~~~Glvd~v~~~~-~~~~~  175 (195)
                      |+++||||++++++ ++...
T Consensus       153 A~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         153 ALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             HHHcCCcccccCCHHHHHHH
Confidence            99999999999886 55544

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.79  E-value=1.3e-18  Score=138.14  Aligned_cols=82  Identities=17%  Similarity=0.288  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      +.+|.++|+.+.+||++++|||+     .||.|.|+..+            ..+++.+..+..++||+|++++|.|.|+|
T Consensus        23 ~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~------------~~~~~~l~~~~~~~kpVia~v~g~a~s~g   85 (211)
T cd07019          23 GDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTAS------------EVIRAELAAARAAGKPVVVSAGGAAASGG   85 (211)
T ss_pred             HHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCeehhHH
Confidence            67899999999999999999997     58999998663            24456677888899999999999999999


Q ss_pred             HHHhhhCCEEEEeCCceee
Q 029329           82 LEMALACDLRICGEAALLG  100 (195)
Q Consensus        82 ~~la~~~D~~va~~~a~~~  100 (195)
                      +.|+++||++++++++.++
T Consensus        86 y~la~~aD~i~a~~~a~~g  104 (211)
T cd07019          86 YWISTPANYIVANPSTLTG  104 (211)
T ss_pred             HHHHHhCCEEEEcCCCEEE
Confidence            9999999999999998875

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.74  E-value=1.4e-17  Score=126.78  Aligned_cols=145  Identities=15%  Similarity=0.123  Sum_probs=103.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      ++++|.+.|+.++.|+.+++|+|+.+     |.|.|+..               ...+...+..++||||+.++|.|.++
T Consensus        12 ~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~~---------------~~~i~~~l~~~~kpvva~~~g~~~s~   71 (161)
T cd00394          12 SADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVDA---------------GMNIVDALQASRKPVIAYVGGQAASA   71 (161)
T ss_pred             hHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHHH---------------HHHHHHHHHHhCCCEEEEECChhHHH
Confidence            46889999999999999999999864     55665532               33455667778899999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCC-----CccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCS-----DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~-----~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      |+.|+++||.|++.+++.|++..+..+.... .     .....+.+...++.-....-.|.+......+.+..+..++++
T Consensus        72 g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~  150 (161)
T cd00394          72 GYYIATAANKIVMAPGTRVGSHGPIGGYGGN-GNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQ  150 (161)
T ss_pred             HHHHHhCCCEEEECCCCEEEEeeeEEecCCC-CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHH
Confidence            9999999999999999999998876554321 1     000011111111100011112233445567788889999999


Q ss_pred             HHHhcCcccee
Q 029329          156 DAMSLGLVNYY  166 (195)
Q Consensus       156 eA~~~Glvd~v  166 (195)
                      ||+++||||+|
T Consensus       151 eA~~~GLvD~i  161 (161)
T cd00394         151 EALEYGLVDAL  161 (161)
T ss_pred             HHHHcCCcCcC
Confidence            99999999985

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.73  E-value=2.1e-17  Score=148.47  Aligned_cols=167  Identities=18%  Similarity=0.204  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      .+.+.+.|+.+..|++||+|||+-+.|     |.+...            .+.+++.+.++...+||||+.++|.|.+||
T Consensus       331 ~~~~~~~l~~a~~D~~VkaIVLrinSp-----GGs~~a------------se~i~~~i~~~~~~gKPVva~~~g~aaSgg  393 (584)
T TIGR00705       331 GDTVAALLRVARSDPDIKAVVLRINSP-----GGSVFA------------SEIIRRELARAQARGKPVIVSMGAMAASGG  393 (584)
T ss_pred             HHHHHHHHHHHhhCCCceEEEEEecCC-----CCCHHH------------HHHHHHHHHHHHhCCCcEEEEECCccccHH
Confidence            357889999999999999999997633     222210            234566667777889999999999999999


Q ss_pred             HHHhhhCCEEEEeCCcee------eccc------ccccccCCCCCcc------------chhhhhhcccCCc-cchhhhh
Q 029329           82 LEMALACDLRICGEAALL------GLPE------TGLAIIPGCSDRS------------LSHVILASDRAGG-TQRLPRL  136 (195)
Q Consensus        82 ~~la~~~D~~va~~~a~~------~~~e------~~~G~~p~~~~~~------------~~~~~~~~~~~g~-~~~l~~~  136 (195)
                      +.++++||.+++++++.+      +.+.      .++|+.+......            ....+....-... ...+...
T Consensus       394 Y~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~  473 (584)
T TIGR00705       394 YWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSV  473 (584)
T ss_pred             HHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999866      4442      4678776411000            0000000000000 0001113


Q ss_pred             hcHHH-----HHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhc-CHH
Q 029329          137 VGKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQS  189 (195)
Q Consensus       137 ig~~~-----a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~-~~~  189 (195)
                      ++..+     ..+.+.+|+.|+++||+++||||++.   .+ ++|.+.|++++.. ++.
T Consensus       474 Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~~~~~  528 (584)
T TIGR00705       474 VSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHCREQW  528 (584)
T ss_pred             HHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCCCCCc
Confidence            33333     56778899999999999999999994   33 7888888888887 443

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.72  E-value=3.4e-17  Score=130.36  Aligned_cols=153  Identities=16%  Similarity=0.152  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      ++.+|.++|+++++||++++|||+.+     |.|.++..            ...+.+.+.++.. +|||||+++|.|.|+
T Consensus        26 ~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~------------~~~l~~~l~~~~~-~KpViA~v~g~a~s~   87 (214)
T cd07022          26 SYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAG------------VFELADAIRAARA-GKPIVAFVNGLAASA   87 (214)
T ss_pred             cHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHH------------HHHHHHHHHHHhc-CCCEEEEECCchhhH
Confidence            46899999999999999999999864     44554432            1334445555555 799999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeeccc------------ccccccCC-------------CCCccchhhhhhcccCCc------
Q 029329           81 GLEMALACDLRICGEAALLGLPE------------TGLAIIPG-------------CSDRSLSHVILASDRAGG------  129 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e------------~~~G~~p~-------------~~~~~~~~~~~~~~~~g~------  129 (195)
                      |+.++++||++++++++.|+..-            -++|+-+.             +.+.+....+...+....      
T Consensus        88 gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~  167 (214)
T cd07022          88 AYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFV  167 (214)
T ss_pred             HHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999864431            12344221             111111111111110000      


Q ss_pred             -cchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHH
Q 029329          130 -TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ  173 (195)
Q Consensus       130 -~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~  173 (195)
                       ...-.|.+.....++++  |+.+++++|++.||||++...+++.
T Consensus       168 ~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~  210 (214)
T cd07022         168 AAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL  210 (214)
T ss_pred             HHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence             00111223334444444  9999999999999999998766654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.72  E-value=5.8e-17  Score=128.40  Aligned_cols=155  Identities=19%  Similarity=0.220  Sum_probs=103.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      ++.+|.++|+.+++||++++|+++++     |.|.|+...            ..+.+.+..+..++||+|++++|.|.|+
T Consensus        18 ~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~~------------~~i~~~i~~~~~~~kpvia~v~g~~~s~   80 (208)
T cd07023          18 GADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVAS------------EEIYREIRRLRKAKKPVVASMGDVAASG   80 (208)
T ss_pred             CHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEECCcchhH
Confidence            57899999999999999999999884     668877541            2345667778888999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeeccc------------ccccccCC------CCCccchhh-------hhhcc-------cCC
Q 029329           81 GLEMALACDLRICGEAALLGLPE------------TGLAIIPG------CSDRSLSHV-------ILASD-------RAG  128 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e------------~~~G~~p~------~~~~~~~~~-------~~~~~-------~~g  128 (195)
                      |+.++++||++++++++.|+..-            -++|+-+.      +-+...++.       +...+       ..-
T Consensus        81 g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~  160 (208)
T cd07023          81 GYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV  160 (208)
T ss_pred             HHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999775421            12344332      111111110       00000       000


Q ss_pred             ccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHH
Q 029329          129 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ  173 (195)
Q Consensus       129 ~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~  173 (195)
                      ....-.|.+...... -+..|..+++++|++.||||++...++..
T Consensus       161 ~~Va~~R~~~~~~~~-~~~~~~~~~a~~A~~~gLiD~i~~~~~~~  204 (208)
T cd07023         161 DVVAEGRGMSGERLD-KLADGRVWTGRQALELGLVDELGGLDDAI  204 (208)
T ss_pred             HHHHhcCCCCHHHHH-HhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence            000001111122222 25678999999999999999998765544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.68  E-value=3.6e-16  Score=123.82  Aligned_cols=156  Identities=19%  Similarity=0.238  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCC--CcEEEEECCcccc
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALP--IPTIAVIDGAALG   79 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kp~Iaav~G~a~g   79 (195)
                      ..+|.++|+.+.+|+++++|+|+.+     |.|.++..               ..++...+.+++  ||+|+.++|.|.|
T Consensus        15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~---------------~~~l~~~i~~~~~~kpvia~v~g~a~s   74 (207)
T TIGR00706        15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA---------------SEEIYEKLKKLKAKKPVVASMGGVAAS   74 (207)
T ss_pred             HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH---------------HHHHHHHHHHhcCCCCEEEEECCccch
Confidence            4688999999999999999999985     55665532               234445555555  9999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeeccc------------ccccccCC-------------CCCccchhhhhhcc-------cC
Q 029329           80 GGLEMALACDLRICGEAALLGLPE------------TGLAIIPG-------------CSDRSLSHVILASD-------RA  127 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e------------~~~G~~p~-------------~~~~~~~~~~~~~~-------~~  127 (195)
                      +|+.++++||.+++++++.++.--            -++|+-+.             +.+.+....+....       ..
T Consensus        75 ~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f  154 (207)
T TIGR00706        75 GGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQF  154 (207)
T ss_pred             HHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998765421            12344221             11111111111100       00


Q ss_pred             CccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHH
Q 029329          128 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE  178 (195)
Q Consensus       128 g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~  178 (195)
                      -....-.|.+.....++ +..|+.+++++|++.||||++...+++.+.+.+
T Consensus       155 ~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~  204 (207)
T TIGR00706       155 VQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE  204 (207)
T ss_pred             HHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            00001112333333333 467899999999999999999887766655444

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.67  E-value=1.3e-15  Score=115.89  Aligned_cols=140  Identities=16%  Similarity=0.153  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      .+++.+.|+.+++++.+. +.|.+.||       ++               .....+...+..++||+++.++|.|.|+|
T Consensus        17 ~~~~~~~l~~~~~~~~i~-l~inspGG-------~~---------------~~~~~i~~~i~~~~~pvi~~v~g~a~s~g   73 (160)
T cd07016          17 AKEFKDALDALGDDSDIT-VRINSPGG-------DV---------------FAGLAIYNALKRHKGKVTVKIDGLAASAA   73 (160)
T ss_pred             HHHHHHHHHhccCCCCEE-EEEECCCC-------CH---------------HHHHHHHHHHHhcCCCEEEEEcchHHhHH
Confidence            467888999998874433 44455432       22               22345677788889999999999999999


Q ss_pred             HHHhhhCCEEEEeCCceeecccccccccCCCCCccc--hhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHHH
Q 029329           82 LEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL--SHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        82 ~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~--~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~eA  157 (195)
                      +.++++||+|++++++.|.++....+..+...+...  ...+...  .-....+.+..|  ....++++..+..++++||
T Consensus        74 ~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA  151 (160)
T cd07016          74 SVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKID--ESIANAYAEKTGLSEEEISALMDAETWLTAQEA  151 (160)
T ss_pred             HHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHH
Confidence            999999999999999999998876555432000000  0000000  001233566677  6777888887888999999


Q ss_pred             HhcCcccee
Q 029329          158 MSLGLVNYY  166 (195)
Q Consensus       158 ~~~Glvd~v  166 (195)
                      +++||||+|
T Consensus       152 ~~~GliD~v  160 (160)
T cd07016         152 VELGFADEI  160 (160)
T ss_pred             HHcCCCCcC
Confidence            999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.62  E-value=1.4e-15  Score=121.76  Aligned_cols=156  Identities=19%  Similarity=0.132  Sum_probs=103.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      ++.+|.++|+++.+||+|++|||+.++ ..| ++.++               +.+++.+.++...+|||||.++| +.++
T Consensus        30 ~~~~l~~~l~~a~~d~~ik~vvL~~~s-~gg-~~~~~---------------~el~~~i~~~~~~~kpVia~~~~-~~sg   91 (222)
T cd07018          30 SLRDLLEALEKAAEDDRIKGIVLDLDG-LSG-GLAKL---------------EELRQALERFRASGKPVIAYADG-YSQG   91 (222)
T ss_pred             cHHHHHHHHHHHhcCCCeEEEEEECCC-CCC-CHHHH---------------HHHHHHHHHHHHhCCeEEEEeCC-CCch
Confidence            367899999999999999999999974 344 44443               34566777777789999999998 8899


Q ss_pred             hHHHhhhCCEEEEeCCceeecccc------------cccccCC------CCC---------ccchhhhhhcccCCcc---
Q 029329           81 GLEMALACDLRICGEAALLGLPET------------GLAIIPG------CSD---------RSLSHVILASDRAGGT---  130 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~------------~~G~~p~------~~~---------~~~~~~~~~~~~~g~~---  130 (195)
                      |+.++++||.+++.+++.|+..-+            ++|+-+.      +-+         .+....+...+-....   
T Consensus        92 gy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~  171 (222)
T cd07018          92 QYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQ  171 (222)
T ss_pred             hhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876422            2343221      001         1111111111000000   


Q ss_pred             ----chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHH
Q 029329          131 ----QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK  175 (195)
Q Consensus       131 ----~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~  175 (195)
                          ..-.|.+.....++ +..|+.+++++|++.||||++...+++.+.
T Consensus       172 f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~  219 (222)
T cd07018         172 YLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEAR  219 (222)
T ss_pred             HHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence                00012222333333 355999999999999999999977766554

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.49  E-value=5.1e-13  Score=103.35  Aligned_cols=140  Identities=19%  Similarity=0.269  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      ..+.++|+++++++ ++.|++.=+.+     |.++               .....+...+.++++|+|+.|+|.|.|+|+
T Consensus        16 ~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v---------------~~~~~I~~~l~~~~~pvva~V~g~AaSaG~   74 (178)
T cd07021          16 AFVERALKEAKEEG-ADAVVLDIDTP-----GGRV---------------DSALEIVDLILNSPIPTIAYVNDRAASAGA   74 (178)
T ss_pred             HHHHHHHHHHHhCC-CCeEEEEEECc-----CCCH---------------HHHHHHHHHHHhCCCCEEEEECCchHHHHH
Confidence            45788899999886 77777766533     3433               446677888889999999999999999999


Q ss_pred             HHhhhCCEEEEeCCceeecccccccccCC-CCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcC----------
Q 029329           83 EMALACDLRICGEAALLGLPETGLAIIPG-CSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTG----------  149 (195)
Q Consensus        83 ~la~~~D~~va~~~a~~~~~e~~~G~~p~-~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g----------  149 (195)
                      .++++||++++++++.|+.+.+-.+-... ..++..+..      ......+.+.-|  ...+..|+-..          
T Consensus        75 ~ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~------~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~  148 (178)
T cd07021          75 LIALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYW------RAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKG  148 (178)
T ss_pred             HHHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHH------HHHHHHHHHHhCCCHHHHHHHhhhhcccccccccc
Confidence            99999999999999999998654221110 001111100      000011222222  44555555544          


Q ss_pred             ---CCCCHHHHHhcCccceecCC
Q 029329          150 ---RKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       150 ---~~~~a~eA~~~Glvd~v~~~  169 (195)
                         ..++++||+++|++|.+.++
T Consensus       149 ~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         149 GELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             cceeeeCHHHHHHhCCeEEEECC
Confidence               27999999999999999876

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>PRK10949 protease 4; Provisional

Probab=99.40  E-value=2.4e-12  Score=116.31  Aligned_cols=158  Identities=16%  Similarity=0.173  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.+.|+++.+|++||+|||+-+.|+     ....            -.+.+++.+.+++...||||+.+.+.|..||+
T Consensus       350 ~~~~~~l~~a~~D~~vkaVvLrInSpG-----Gs~~------------ase~i~~~i~~~r~~gKPVvas~~~~aASggY  412 (618)
T PRK10949        350 DTTAAQIRDARLDPKVKAIVLRVNSPG-----GSVT------------ASEVIRAELAAARAAGKPVVVSMGGMAASGGY  412 (618)
T ss_pred             HHHHHHHHHHHhCCCCcEEEEEecCCC-----CcHH------------HHHHHHHHHHHHHhcCCcEEEEECCCCccHHH
Confidence            468899999999999999999987443     2111            13556677777777899999999999999999


Q ss_pred             HHhhhCCEEEEeCCceeec-------c-----cccccccCC------C------CCccchhhhhhcc-------cCCccc
Q 029329           83 EMALACDLRICGEAALLGL-------P-----ETGLAIIPG------C------SDRSLSHVILASD-------RAGGTQ  131 (195)
Q Consensus        83 ~la~~~D~~va~~~a~~~~-------~-----e~~~G~~p~------~------~~~~~~~~~~~~~-------~~g~~~  131 (195)
                      .++++||.+++.|.+..+.       +     -.++|+...      +      .+.+....+....       +.-...
T Consensus       413 ~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~V  492 (618)
T PRK10949        413 WISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLV  492 (618)
T ss_pred             HHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999864332       1     112444322      0      1111111111110       000001


Q ss_pred             hhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHH
Q 029329          132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE  178 (195)
Q Consensus       132 ~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~  178 (195)
                      .-.|.+......+ +..|+.|++++|++.||||++...++..+.+.+
T Consensus       493 a~~R~~~~~~v~~-ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~  538 (618)
T PRK10949        493 ADSRHKTPEQIDK-IAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE  538 (618)
T ss_pred             HhhCCCCHHHHHH-HhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence            1122233333333 578999999999999999999775544444443

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.30  E-value=3.7e-11  Score=92.31  Aligned_cols=144  Identities=15%  Similarity=0.205  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC---Ccccc
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG   79 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~---G~a~g   79 (195)
                      ..|.+.++.+++| +.+.|+|.=+     |.|.++               .....++..+...++||++.++   |.|.+
T Consensus        16 ~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v---------------~~~~~I~~~i~~~~~pvv~~v~p~g~~AaS   74 (172)
T cd07015          16 DQFDRYITIAEQD-NAEAIIIELD-----TPGGRA---------------DAAGNIVQRIQQSKIPVIIYVYPPGASAAS   74 (172)
T ss_pred             HHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCcCEEEEEecCCCeehh
Confidence            4577888888775 5788888765     334433               2344566777788999999999   99999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccC-CCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHH
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIP-GCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p-~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~e  156 (195)
                      +|+.++++||.+++.|++.++...+..+..+ ..++.+...+....  ..-..-+.+.-|  ...+.+++-....++++|
T Consensus        75 ag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~--~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~E  152 (172)
T cd07015          75 AGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYF--IAYIKSLAQESGRNATIAEEFITKDLSLTPEE  152 (172)
T ss_pred             HHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHH--HHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHH
Confidence            9999999999999999999998877533222 00001010000000  000111333344  566778888889999999


Q ss_pred             HHhcCccceecCC
Q 029329          157 AMSLGLVNYYVPA  169 (195)
Q Consensus       157 A~~~Glvd~v~~~  169 (195)
                      |+++|++|.+.++
T Consensus       153 A~~~G~iD~ia~~  165 (172)
T cd07015         153 ALKYGVIEVVARD  165 (172)
T ss_pred             HHHcCCceeeeCC
Confidence            9999999999976

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.21  E-value=9.5e-11  Score=89.45  Aligned_cols=143  Identities=11%  Similarity=0.141  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      .+++.+.|..++.++..+.|+|.=+     |.|.++               .....++..+...++|+++.+.|.|.++|
T Consensus        14 ~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v---------------~~~~~i~~~i~~~~~~v~~~~~g~aaS~~   73 (162)
T cd07013          14 ANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV---------------FAGMAIYDTIKFIKADVVTIIDGLAASMG   73 (162)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH---------------HHHHHHHHHHHhcCCCceEEEEeehhhHH
Confidence            4678889999998877777777655     233433               23445666777789999999999999999


Q ss_pred             HHHhhhCC--EEEEeCCceeecccccccccCCCCCccc--hhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHH
Q 029329           82 LEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSL--SHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        82 ~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~--~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~  155 (195)
                      ..+++++|  .|++.+++.+.+....-+......+...  ...+...++  ....+.+..|  ....++++-.+..++++
T Consensus        74 ~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~--~~~~~a~~tg~~~~~i~~~~~~~~~~sa~  151 (162)
T cd07013          74 SVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGN--LVSAYAHKTGQSEEELHADLERDTWLSAR  151 (162)
T ss_pred             HHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCHHHHHHHHcCCccccHH
Confidence            99999999  6888889888876543222111000000  000000000  0112222223  55566667777777999


Q ss_pred             HHHhcCcccee
Q 029329          156 DAMSLGLVNYY  166 (195)
Q Consensus       156 eA~~~Glvd~v  166 (195)
                      ||+++||||++
T Consensus       152 eA~~~GliD~i  162 (162)
T cd07013         152 EAVEYGFADTI  162 (162)
T ss_pred             HHHHcCCCCcC
Confidence            99999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.18  E-value=1.5e-10  Score=97.30  Aligned_cols=159  Identities=21%  Similarity=0.238  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.+.|+.+..||++++|+|+-+.|+.-..+                 .+.+.+.+.++..-. |+++.|++.|.+||+
T Consensus        83 ~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~a-----------------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY  144 (317)
T COG0616          83 DDIEEILRAARADPSVKAVVLRINSPGGSVVA-----------------SELIARALKRLRAKK-PVVVSVGGYAASGGY  144 (317)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEEECcCCchhH-----------------HHHHHHHHHHHhhcC-CEEEEECCeecchhh
Confidence            56788999999999999999987644322211                 245666666666555 999999999999999


Q ss_pred             HHhhhCCEEEEeCCceeecccccc------------ccc---------CC----CCCccchhhhhhcccCCcc-chhhhh
Q 029329           83 EMALACDLRICGEAALLGLPETGL------------AII---------PG----CSDRSLSHVILASDRAGGT-QRLPRL  136 (195)
Q Consensus        83 ~la~~~D~~va~~~a~~~~~e~~~------------G~~---------p~----~~~~~~~~~~~~~~~~g~~-~~l~~~  136 (195)
                      .+|++||.++|+|++..+-=-+..            |+-         -+    ..+.|.......+....-. ..+...
T Consensus       145 ~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~  224 (317)
T COG0616         145 YIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDK  224 (317)
T ss_pred             hhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998554322221            210         00    1111111100000000000 000000


Q ss_pred             h-----cHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHH
Q 029329          137 V-----GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI  179 (195)
Q Consensus       137 i-----g~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~  179 (195)
                      +     .......-+.+|+.|++++|.+.||||++...++....+.+.
T Consensus       225 V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~  272 (317)
T COG0616         225 VAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL  272 (317)
T ss_pred             HHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence            0     011113347789999999999999999998765555444443

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.02  E-value=1.6e-09  Score=83.41  Aligned_cols=145  Identities=12%  Similarity=0.067  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      ..++...|..++.++..+.|++.=+     |.|.|+               .....++..+...+.|+++.+.|.|.++|
T Consensus        23 ~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v---------------~~~~~i~~~l~~~~~~v~t~~~g~aaS~~   82 (171)
T cd07017          23 ANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSV---------------TAGLAIYDTMQYIKPPVSTICLGLAASMG   82 (171)
T ss_pred             HHHHHHHHHHHHccCCCCceEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEEEeEehhHH
Confidence            3567888888887766565555444     223333               22335556666779999999999999999


Q ss_pred             HHHhhhCC--EEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHHH
Q 029329           82 LEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        82 ~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~eA  157 (195)
                      ..+++++|  .|++.+++.|.+.+...+....-.+......++...+......+....|  .....+++..+..++++||
T Consensus        83 ~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA  162 (171)
T cd07017          83 ALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEA  162 (171)
T ss_pred             HHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Confidence            99999999  8999999999998876543222000000000000000111112222233  4456677778899999999


Q ss_pred             HhcCcccee
Q 029329          158 MSLGLVNYY  166 (195)
Q Consensus       158 ~~~Glvd~v  166 (195)
                      +++||||+|
T Consensus       163 ~e~GiiD~V  171 (171)
T cd07017         163 KEYGLIDKI  171 (171)
T ss_pred             HHcCCCccC
Confidence            999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.98  E-value=4.3e-09  Score=88.38  Aligned_cols=120  Identities=23%  Similarity=0.245  Sum_probs=72.4

Q ss_pred             HHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccc------------cccccCC------C-------C
Q 029329           59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET------------GLAIIPG------C-------S  113 (195)
Q Consensus        59 ~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~------------~~G~~p~------~-------~  113 (195)
                      +.++...+||+++.+++.|..||+.+|++||.+++.|.+.++.--+            ++|+-+.      +       .
T Consensus       147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~  226 (330)
T PRK11778        147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG  226 (330)
T ss_pred             HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence            4566778999999999999999999999999999999986544221            1233111      1       1


Q ss_pred             CccchhhhhhcccCCcc-chhhhhhcH---HHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHH
Q 029329          114 DRSLSHVILASDRAGGT-QRLPRLVGK---SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE  178 (195)
Q Consensus       114 ~~~~~~~~~~~~~~g~~-~~l~~~ig~---~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~  178 (195)
                      +.+...++...+-...+ ..+...+-.   ....+-+.+|+.|++++|++.||||++...+++...+.+
T Consensus       227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~  295 (330)
T PRK11778        227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK  295 (330)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence            11111111111000000 000000100   011234678999999999999999999988777654443

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.92  E-value=5.6e-09  Score=82.72  Aligned_cols=146  Identities=13%  Similarity=0.113  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      .+++...|..++.++..+.|.+.=+     |.|.++               .....++..+...+.|+++.+.|.|.+.|
T Consensus        49 ~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v---------------~~g~~I~d~i~~~~~~v~t~~~G~aaSaa  108 (207)
T PRK12553         49 ANDVMAQLLVLESIDPDRDITLYIN-----SPGGSV---------------TAGDAIYDTIQFIRPDVQTVCTGQAASAG  108 (207)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcH---------------HHHHHHHHHHHhcCCCcEEEEEeehhhHH
Confidence            3567888888886553444444333     223333               23445667777788899999999999999


Q ss_pred             HHHhhhCC--EEEEeCCceeecccccc-cccCCCCCccchh---hhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCC
Q 029329           82 LEMALACD--LRICGEAALLGLPETGL-AIIPGCSDRSLSH---VILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVS  153 (195)
Q Consensus        82 ~~la~~~D--~~va~~~a~~~~~e~~~-G~~p~~~~~~~~~---~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~  153 (195)
                      ..++++||  .|++.+++.|.+.+... |..-+  ..+...   .++..-|......+.+..|  .....+++-.+..++
T Consensus       109 ~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G--~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lt  186 (207)
T PRK12553        109 AVLLAAGTPGKRFALPNARILIHQPSLGGGIRG--QASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLT  186 (207)
T ss_pred             HHHHHcCCcCcEEECCCchhhhcCccccCCCcc--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccc
Confidence            99999999  59999999999987653 21111  000000   0000000001122233333  456667777889999


Q ss_pred             HHHHHhcCccceecCC
Q 029329          154 GKDAMSLGLVNYYVPA  169 (195)
Q Consensus       154 a~eA~~~Glvd~v~~~  169 (195)
                      ++||+++||||+|+++
T Consensus       187 a~EA~e~GliD~I~~~  202 (207)
T PRK12553        187 AEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHHHHcCCccEEcCc
Confidence            9999999999999875

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.91  E-value=1.6e-08  Score=79.65  Aligned_cols=147  Identities=9%  Similarity=0.038  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+...|..++.++..+-|.+.=+     |.|.|+               .....++..+...+.|+++.+.|.|.+.|.
T Consensus        46 ~~i~~~L~~l~~~~~~~~I~l~In-----SpGG~v---------------~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~  105 (200)
T PRK00277         46 NLIVAQLLFLEAEDPDKDIYLYIN-----SPGGSV---------------TAGLAIYDTMQFIKPDVSTICIGQAASMGA  105 (200)
T ss_pred             HHHHHHHHHhhccCCCCCEEEEEE-----CCCCcH---------------HHHHHHHHHHHhcCCCEEEEEEeEeccHHH
Confidence            456777777775543333333322     122333               223355666777788999999999999999


Q ss_pred             HHhhhCC--EEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHHHH
Q 029329           83 EMALACD--LRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        83 ~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~eA~  158 (195)
                      .++++++  .|++.+++.+.+....-+....-.+......++-.-|......+....|  .....+++-.+..++++||+
T Consensus       106 ~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~  185 (200)
T PRK00277        106 FLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAK  185 (200)
T ss_pred             HHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHH
Confidence            9999764  6899999988887654332111000000000000000000122333333  45566667778889999999


Q ss_pred             hcCccceecCC
Q 029329          159 SLGLVNYYVPA  169 (195)
Q Consensus       159 ~~Glvd~v~~~  169 (195)
                      ++||||+|+..
T Consensus       186 e~GliD~Ii~~  196 (200)
T PRK00277        186 EYGLIDEVLTK  196 (200)
T ss_pred             HcCCccEEeec
Confidence            99999999875

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.87  E-value=1.5e-08  Score=91.58  Aligned_cols=83  Identities=18%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      +.++.++|+.+.+||.|++|+|.-++    +.|.++..            .+++++.+..+....|||+|..++.+ .+|
T Consensus        78 l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~------------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~  140 (584)
T TIGR00705        78 LFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPH------------LVEIGSALSEFKDSGKPVYAYGTNYS-QGQ  140 (584)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHH------------HHHHHHHHHHHHhcCCeEEEEEcccc-chh
Confidence            56899999999999999999999752    12333321            35677777788888999999888765 788


Q ss_pred             HHHhhhCCEEEEeCCceeec
Q 029329           82 LEMALACDLRICGEAALLGL  101 (195)
Q Consensus        82 ~~la~~~D~~va~~~a~~~~  101 (195)
                      +.++.+||.+++.|.+.+++
T Consensus       141 YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       141 YYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             hhhhhhCCEEEECCCceEEe
Confidence            99999999999999987644

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.83  E-value=4.2e-09  Score=81.69  Aligned_cols=114  Identities=12%  Similarity=0.141  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCc--cchhhhhhcccCCc
Q 029329           54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDR--SLSHVILASDRAGG  129 (195)
Q Consensus        54 ~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~--~~~~~~~~~~~~g~  129 (195)
                      ....++..+..++.|+++.+.|.|.+.|..++++||.  |++.+++.|.+.++..+......+.  .........+|  .
T Consensus        62 ~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~--~  139 (182)
T PF00574_consen   62 AGLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNER--I  139 (182)
T ss_dssp             HHHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHH--H
Confidence            3456777888899999999999999999999999999  8999999999998876543310000  00000011110  0


Q ss_pred             cchhhhhh--cHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          130 TQRLPRLV--GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       130 ~~~l~~~i--g~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      ...+....  ......+++-...-++++||+++||||+|...
T Consensus       140 ~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  140 ANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             HHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred             HHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence            12222232  34555666666677899999999999999754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.82  E-value=3.7e-08  Score=77.41  Aligned_cols=113  Identities=12%  Similarity=0.006  Sum_probs=75.4

Q ss_pred             HHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCcc--chhhhhhcccCCcc
Q 029329           55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRS--LSHVILASDRAGGT  130 (195)
Q Consensus        55 ~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~--~~~~~~~~~~~g~~  130 (195)
                      ...++..+...+.||++.+.|.|.+.|..++++||.  |++.|++.|.+....-+......+-.  ....+...+  ...
T Consensus        70 g~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~--~i~  147 (197)
T PRK14512         70 GFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKS--ELN  147 (197)
T ss_pred             HHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHH--HHH
Confidence            445667777789999999999999999999999985  99999999987765433311100000  000001111  011


Q ss_pred             chhhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          131 QRLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       131 ~~l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      ..+....|  .....+++-....++++||+++||+|+|++.
T Consensus       148 ~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~  188 (197)
T PRK14512        148 DIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET  188 (197)
T ss_pred             HHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence            12233333  4556666777788999999999999999976

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.78  E-value=5.7e-08  Score=76.47  Aligned_cols=115  Identities=13%  Similarity=0.030  Sum_probs=77.0

Q ss_pred             HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeeccccccc-ccCCCCCccchhhhhhcccCCccch
Q 029329           56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLA-IIPGCSDRSLSHVILASDRAGGTQR  132 (195)
Q Consensus        56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G-~~p~~~~~~~~~~~~~~~~~g~~~~  132 (195)
                      ..++..+...+.||...+.|.|.+.|..|++++|  .|++.++++|.+.....| ....-.+......++..-|......
T Consensus        78 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~  157 (200)
T CHL00028         78 LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRV  157 (200)
T ss_pred             HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777788999999999999999999999999  699999999999887655 2211000000000111101111122


Q ss_pred             hhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329          133 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG  170 (195)
Q Consensus       133 l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~  170 (195)
                      +....|  .....+++-....++|+||+++||||+|..+.
T Consensus       158 ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        158 YAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             HHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence            333334  34556667777889999999999999998753

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.76  E-value=9e-10  Score=92.36  Aligned_cols=159  Identities=18%  Similarity=0.099  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      ..+|..-|+.++.+..+++.++++...+.|++|.|..+............+-.+++++....+++.|+.+++||++..++
T Consensus        84 k~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk  163 (380)
T KOG1683|consen   84 KHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGK  163 (380)
T ss_pred             HHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCC
Confidence            45777888888899999999999988899999999998876666666667788999999999999999999999999998


Q ss_pred             --HHHhhhCCEEEEeC--CceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           82 --LEMALACDLRICGE--AALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        82 --~~la~~~D~~va~~--~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                        +.++.+|+|++...  .-..+..+...++..+      +        + -.-.+...+|...+...+-.+.-++..|+
T Consensus       164 ~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~------p--------~-~iD~~~t~fGf~~g~~~L~d~~gfdv~ea  228 (380)
T KOG1683|consen  164 LPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGAD------P--------W-LIDSLITKFGFRVGERALADGVGFDVAEA  228 (380)
T ss_pred             ccEEeccCCceEEEecccHHHHHHHHHHHHcCCC------H--------H-HHHHHHHhcCccccHHHHhhccCccHHHH
Confidence              99999999999994  4445778877774332      0        1 12223445566666666778899999999


Q ss_pred             HhcCccceecCC--ChHHHH
Q 029329          158 MSLGLVNYYVPA--GQAQLK  175 (195)
Q Consensus       158 ~~~Glvd~v~~~--~~~~~~  175 (195)
                      .+.|+++++.|.  +++.+.
T Consensus       229 l~~gl~~~~~~r~~eel~~~  248 (380)
T KOG1683|consen  229 LAVGLGDEIGPRIEEELLEK  248 (380)
T ss_pred             HhhccchhccchhHHHHHHH
Confidence            999999999984  444433

>PRK10949 protease 4; Provisional

Probab=98.76  E-value=4.8e-08  Score=88.65  Aligned_cols=83  Identities=14%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      +.++.++|+.+.+||.|++|+|.-++++    |..+.            -.+++++.+.++....||+||..+. +..++
T Consensus        97 l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a------------~~~eI~~ai~~fk~sGKpVvA~~~~-~~s~~  159 (618)
T PRK10949         97 LFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQP------------SMQYIGKALREFRDSGKPVYAVGDS-YSQGQ  159 (618)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHH------------HHHHHHHHHHHHHHhCCeEEEEecC-ccchh
Confidence            4679999999999999999999986322    22221            1356777888888889999986444 45678


Q ss_pred             HHHhhhCCEEEEeCCceeec
Q 029329           82 LEMALACDLRICGEAALLGL  101 (195)
Q Consensus        82 ~~la~~~D~~va~~~a~~~~  101 (195)
                      +.||.+||.+++.|.+.+++
T Consensus       160 YyLASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        160 YYLASFANKIYLSPQGVVDL  179 (618)
T ss_pred             hhhhhhCCEEEECCCceEEE
Confidence            99999999999999976644

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.72  E-value=1.9e-07  Score=73.07  Aligned_cols=144  Identities=10%  Similarity=0.045  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +++...|..++.++..+-|.+.=+     |.|.|+               .....++..+...+.|+...+.|.|.+.|.
T Consensus        41 ~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v---------------~~g~~I~d~l~~~~~~v~t~~~G~AaSaas  100 (191)
T TIGR00493        41 NLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSI---------------TAGLAIYDTMQFIKPDVSTICIGQAASMGA  100 (191)
T ss_pred             HHHHHHHHHhhccCCCCCEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEEEEeeccHHH
Confidence            456677777776554444444333     223333               223345556666677888888899999999


Q ss_pred             HHhhhCC--EEEEeCCceeecccccccccCCCCCccc--hhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHH
Q 029329           83 EMALACD--LRICGEAALLGLPETGLAIIPGCSDRSL--SHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        83 ~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~--~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~e  156 (195)
                      .+++++|  .|++.+++.|.+.+..-|....-.+...  ..++...+  .....+.+..|  .....+++-.+..++++|
T Consensus       101 lI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~--~~~~~ya~~tg~~~~~i~~~~~~~~~lta~E  178 (191)
T TIGR00493       101 FLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKG--LLNDILANHTGQSLEQIEKDTERDFFMSAEE  178 (191)
T ss_pred             HHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHH--HHHHHHHHHHCcCHHHHHHHhhCCccCcHHH
Confidence            9988766  6999999999998765443221000000  00001100  01122333333  455667777888999999


Q ss_pred             HHhcCccceecC
Q 029329          157 AMSLGLVNYYVP  168 (195)
Q Consensus       157 A~~~Glvd~v~~  168 (195)
                      |+++||+|+|+.
T Consensus       179 A~~~GliD~ii~  190 (191)
T TIGR00493       179 AKEYGLIDSVLT  190 (191)
T ss_pred             HHHcCCccEEec
Confidence            999999999864

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.70  E-value=2.1e-07  Score=74.21  Aligned_cols=113  Identities=8%  Similarity=-0.021  Sum_probs=75.9

Q ss_pred             HHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhh
Q 029329           57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLP  134 (195)
Q Consensus        57 ~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~  134 (195)
                      .++..+...+-||...+.|.|.+.|..|++++|.  |++.+++.|.+....-|....-++-.....++..-|......+.
T Consensus       103 aIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya  182 (221)
T PRK14514        103 GIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIA  182 (221)
T ss_pred             HHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            5666777788999999999999999999999996  99999999998887544322100000000011111111122233


Q ss_pred             hhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          135 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       135 ~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      +..|  .....+.+-....++|+||+++||||+|+..
T Consensus       183 ~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        183 DHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence            4444  3445566777888999999999999999854

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.69  E-value=2.3e-07  Score=72.85  Aligned_cols=115  Identities=13%  Similarity=0.017  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchh
Q 029329           56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRL  133 (195)
Q Consensus        56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l  133 (195)
                      ..++..+...+.||...+.|.|.+.|..|++++|.  |++.+++.+.+....-|..-.-.+-.....++..-|......+
T Consensus        73 ~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~y  152 (196)
T PRK12551         73 LGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTEL  152 (196)
T ss_pred             HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            35666777788899999999999999999999985  8999999999888753322110000000000100011111223


Q ss_pred             hhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329          134 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG  170 (195)
Q Consensus       134 ~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~  170 (195)
                      .+..|  .....+++-.-..++++||+++||||+|++..
T Consensus       153 a~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        153 SERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             HHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence            33344  34455666677789999999999999998763

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.67  E-value=2.1e-07  Score=73.22  Aligned_cols=115  Identities=12%  Similarity=0.083  Sum_probs=77.8

Q ss_pred             HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchh
Q 029329           56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRL  133 (195)
Q Consensus        56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l  133 (195)
                      ..++..+...+-||...+.|.|.+.+..|++++|-  |++.|++.+-+.....|..-.-.+-.....++...|......+
T Consensus        75 laIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iy  154 (201)
T PRK14513         75 LAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIY  154 (201)
T ss_pred             HHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777888899999999999999999999996  9999999999888765532110000000001111111122233


Q ss_pred             hhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329          134 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG  170 (195)
Q Consensus       134 ~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~  170 (195)
                      .+..|  .....+++-....++|+||+++||||+|+++.
T Consensus       155 a~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~  193 (201)
T PRK14513        155 HRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT  193 (201)
T ss_pred             HHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence            44444  34556666677889999999999999998764

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=98.65  E-value=8.1e-08  Score=72.62  Aligned_cols=117  Identities=18%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             HHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccc------------cccccCC-------------CCCcc
Q 029329           62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET------------GLAIIPG-------------CSDRS  116 (195)
Q Consensus        62 ~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~------------~~G~~p~-------------~~~~~  116 (195)
                      +.+..|||+|.+++.+.++++.++++||.+++.+.+.++..-+            ++|+-+.             ..+.+
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            4568999999999999999999999999999999986654321            1333211             11111


Q ss_pred             chhhhhhcccCCcc--ch-----hhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHH
Q 029329          117 LSHVILASDRAGGT--QR-----LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI  179 (195)
Q Consensus       117 ~~~~~~~~~~~g~~--~~-----l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~  179 (195)
                      ....+...+.....  .+     -.|.+..... +-+..|..+++++|++.||||++...+++.+.+.+.
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v-~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~  150 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDV-EEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH-HCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence            11111111000000  00     0111111111 225789999999999999999998776666555443

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.59  E-value=2.8e-06  Score=69.33  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329           51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT  130 (195)
Q Consensus        51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~  130 (195)
                      ..+.+.+.+..+...+.|+|+.|-|.|.|||......||++++.+++.++.-..                      .+..
T Consensus       121 ~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~p----------------------e~~a  178 (256)
T PRK12319        121 QGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSP----------------------EGFA  178 (256)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEcCH----------------------HHHH
Confidence            345677777788889999999999999999988889999999999987765321                      1111


Q ss_pred             chhhh-hhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCC--h-------HHHHHHHHHHHHhhcCHHHH
Q 029329          131 QRLPR-LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG--Q-------AQLKALEIAQEINQKVQSVF  191 (195)
Q Consensus       131 ~~l~~-~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~--~-------~~~~a~~~a~~~~~~~~~~~  191 (195)
                      ..+-+ .--...+.+.    ..+++.++++.|+||+|+|+.  +       +.+...+...++...++..+
T Consensus       179 ~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~ii~e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  245 (256)
T PRK12319        179 SILWKDGSRATEAAEL----MKITAGELLEMGVVDKVIPEHGYFSSEIIDMIKKNLIEELAQLSQKPLEQL  245 (256)
T ss_pred             HHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEecCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            11111 1111222333    277999999999999999742  1       22333455566666666554

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.56  E-value=1.5e-06  Score=70.65  Aligned_cols=58  Identities=22%  Similarity=0.311  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCC
Q 029329           54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG  111 (195)
Q Consensus        54 ~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~  111 (195)
                      .-.++...+.+.+.|+.+.|+..|+++|..++++||.++|.+.+.+|--+.++|-.|.
T Consensus       106 AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA  163 (285)
T PF01972_consen  106 AAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA  163 (285)
T ss_pred             HHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence            3445667777899999999999999999999999999999999999999999988775

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.48  E-value=7.5e-06  Score=68.55  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329           51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT  130 (195)
Q Consensus        51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~  130 (195)
                      ..+.+.+.+..+.....|+|+.|-|.|.|||......||++++.+++.++.-.      |.                |..
T Consensus       177 ~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVis------PE----------------g~a  234 (322)
T CHL00198        177 QGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVAT------PE----------------ACA  234 (322)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecC------HH----------------HHH
Confidence            34566677777788999999999999988887666679999999998776532      21                111


Q ss_pred             chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCC------h-------HHHHHHHHHHHHhhcCHHHH
Q 029329          131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG------Q-------AQLKALEIAQEINQKVQSVF  191 (195)
Q Consensus       131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~------~-------~~~~a~~~a~~~~~~~~~~~  191 (195)
                      ..+-+  ...++.+. ...-++++++.+++|+||+|+|.-      +       +.+...+...++...++..+
T Consensus       235 ~Il~~--d~~~a~~a-A~~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l  305 (322)
T CHL00198        235 AILWK--DSKKSLDA-AEALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLIRQLDFLKILSPSEL  305 (322)
T ss_pred             HHHhc--chhhHHHH-HHHcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            11111  12333332 334689999999999999999742      1       22333344555666666544

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.43  E-value=1e-05  Score=69.57  Aligned_cols=117  Identities=16%  Similarity=0.163  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329           51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT  130 (195)
Q Consensus        51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~  130 (195)
                      ..+.+.+.+..+.....|+|+.|-|.+.+||......||+++|.+++.++.-.      |.               ..+.
T Consensus       244 qa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVis------PE---------------gaAs  302 (431)
T PLN03230        244 QGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVAS------PE---------------ACAA  302 (431)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecC------HH---------------HHHH
Confidence            44567777778889999999999999977776655679999999998765422      21               1111


Q ss_pred             chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCC------h-------HHHHHHHHHHHHhhcCHHHHH
Q 029329          131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG------Q-------AQLKALEIAQEINQKVQSVFR  192 (195)
Q Consensus       131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~------~-------~~~~a~~~a~~~~~~~~~~~~  192 (195)
                      ..+....-...+.+    ...+++.++++.|+||+|+|.-      +       +.+...+...++.+.++..+.
T Consensus       303 ILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~  373 (431)
T PLN03230        303 ILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELL  373 (431)
T ss_pred             HHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            11111111222222    3489999999999999999742      1       222333445556666665543

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.39  E-value=1.4e-05  Score=66.79  Aligned_cols=116  Identities=17%  Similarity=0.144  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329           51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT  130 (195)
Q Consensus        51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~  130 (195)
                      ..+.+.+.+..+.....|+|+.|-|.|.|||......||++++.+++.++.-       ++               .|+.
T Consensus       174 ~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVi-------sP---------------Eg~a  231 (316)
T TIGR00513       174 QSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVI-------SP---------------EGCA  231 (316)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEec-------CH---------------HHHH
Confidence            3456777777788899999999999998888766667999999999877542       22               1222


Q ss_pred             chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCC------h-------HHHHHHHHHHHHhhcCHHHH
Q 029329          131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG------Q-------AQLKALEIAQEINQKVQSVF  191 (195)
Q Consensus       131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~------~-------~~~~a~~~a~~~~~~~~~~~  191 (195)
                      ..+-+-  ..++.+..- -..+++.++++.|+||.|+|.-      +       +.+...+...++...++..+
T Consensus       232 ~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l  302 (316)
T TIGR00513       232 AILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEEL  302 (316)
T ss_pred             HHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            221111  112222212 2577899999999999999742      1       22333445556666666554

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.37  E-value=3.1e-06  Score=66.21  Aligned_cols=115  Identities=12%  Similarity=0.096  Sum_probs=72.2

Q ss_pred             HHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEE--EEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhh
Q 029329           57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLR--ICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLP  134 (195)
Q Consensus        57 ~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~--va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~  134 (195)
                      .++..+...++||...+-|.+.+.|..|++++|..  ++.|++++-+....-|....-.+...--.+..--|.-....+.
T Consensus        76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a  155 (200)
T COG0740          76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYA  155 (200)
T ss_pred             HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677788999999999999999999999999995  9999999988877633321100000000000000000011122


Q ss_pred             hhhcH--HHHHHHHHcCCCCCHHHHHhcCccceecCCCh
Q 029329          135 RLVGK--SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ  171 (195)
Q Consensus       135 ~~ig~--~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~  171 (195)
                      ...|.  ..-.+.+-....++|+||+++||||+|....+
T Consensus       156 ~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         156 EHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             HHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence            22232  22233344567799999999999999987643

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=6.1e-06  Score=71.19  Aligned_cols=141  Identities=13%  Similarity=0.238  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC---Cccc
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAAL   78 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~---G~a~   78 (195)
                      .+.+.+.++.++++.. -++|+.=+.|+    |                +.+.+++..+.+.+.+.|++..+.   ++|.
T Consensus        42 ~~~l~r~l~~A~~~~a-~~vvl~ldTPG----G----------------l~~sm~~iv~~i~~s~vPV~~yv~p~ga~Aa  100 (436)
T COG1030          42 ADYLQRALQSAEEENA-AAVVLELDTPG----G----------------LLDSMRQIVRAILNSPVPVIGYVVPDGARAA  100 (436)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEEecCCC----c----------------hHHHHHHHHHHHHcCCCCEEEEEcCCCcchh
Confidence            3567888888887652 34444333333    1                246788999999999999999885   5799


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccc-cCCCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAI-IPGCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~-~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~  155 (195)
                      ++|..++++||+..|+|.+.++-...-.+- .+.....+.+..      ..-..-+.+.-|  ...+.+++.....++++
T Consensus       101 SAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~------~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~  174 (436)
T COG1030         101 SAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAA------VAYIRSLAEERGRNPTWAERFVTENLSLTAE  174 (436)
T ss_pred             chhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHH------HHHHHHHHHHcCCChHHHHHHhhhccCCChh
Confidence            999999999999999999999876554332 111111111111      000111222223  56688888889999999


Q ss_pred             HHHhcCccceecCC
Q 029329          156 DAMSLGLVNYYVPA  169 (195)
Q Consensus       156 eA~~~Glvd~v~~~  169 (195)
                      ||++.|++|-+..+
T Consensus       175 eA~~~~vid~iA~~  188 (436)
T COG1030         175 EALRQGVIDLIARD  188 (436)
T ss_pred             HHHhcCccccccCC
Confidence            99999999998765

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.31  E-value=2.9e-05  Score=65.07  Aligned_cols=94  Identities=19%  Similarity=0.229  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329           51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT  130 (195)
Q Consensus        51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~  130 (195)
                      ..+.+.+.+..+.....|+|+.|-|.+.|||......||++++.+++.++.       .++               .|+.
T Consensus       174 ~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isP---------------Eg~a  231 (319)
T PRK05724        174 QSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISP---------------EGCA  231 (319)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEee-------cCH---------------HHHH
Confidence            356677788888899999999999999888876666799999999987754       222               2222


Q ss_pred             chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      ..+-+-  ..++.+..- ...+++.++++.|+||+|+|.
T Consensus       232 ~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~E  267 (319)
T PRK05724        232 SILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIPE  267 (319)
T ss_pred             HHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEeccC
Confidence            222211  123333322 557899999999999999974

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.31  E-value=3.3e-05  Score=70.49  Aligned_cols=95  Identities=13%  Similarity=0.162  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCc
Q 029329           50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGG  129 (195)
Q Consensus        50 ~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~  129 (195)
                      .....+.+.+..+.....|+|++|-|.|.|||......||+++|.+++.++.-.      |.               +++
T Consensus       264 Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVis------PE---------------gaA  322 (762)
T PLN03229        264 GQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVAS------PE---------------ACA  322 (762)
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecC------HH---------------HHH
Confidence            345667777778889999999999999998888888889999999998765422      22               111


Q ss_pred             cchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          130 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       130 ~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      ...+..   ..++.+ +...-.+++++.+++|+||.|+|.
T Consensus       323 sILwkd---~~~A~e-AAe~lkiTa~dL~~lGiiD~IIpE  358 (762)
T PLN03229        323 AILWKS---AKAAPK-AAEKLRITAQELCRLQIADGIIPE  358 (762)
T ss_pred             HHHhcC---cccHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence            111111   122222 234468999999999999999984

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=98.28  E-value=7.8e-06  Score=65.20  Aligned_cols=115  Identities=13%  Similarity=0.057  Sum_probs=74.4

Q ss_pred             HHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccch
Q 029329           55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQR  132 (195)
Q Consensus        55 ~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~  132 (195)
                      ...++..+...+-||...+-|.|.+.+..|++++|-  |++.+++++-+....-|..-.-.+-.....++...|......
T Consensus        96 glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~i  175 (222)
T PRK12552         96 AFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEI  175 (222)
T ss_pred             HHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            335666666778889999999999999999999996  999999999998876443211000000000111111111222


Q ss_pred             hhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          133 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       133 l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      +.+..|  .....+.+-.-..++|+||+++||||+|..+
T Consensus       176 ya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        176 LSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             HHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence            333344  2344455556677999999999999999865

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=98.11  E-value=0.00012  Score=60.22  Aligned_cols=84  Identities=26%  Similarity=0.299  Sum_probs=57.4

Q ss_pred             HHHHcCCCcEEEEECCc--ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh
Q 029329           60 SFLEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV  137 (195)
Q Consensus        60 ~~~~~~~kp~Iaav~G~--a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i  137 (195)
                      .++... .|+|+.+.|+  |.||+..++..||++|+++++.+++.-.++                          .....
T Consensus       131 ~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V--------------------------Ie~~~  183 (274)
T TIGR03133       131 LDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV--------------------------IEQEA  183 (274)
T ss_pred             HHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH--------------------------HHHhc
Confidence            344444 9999999999  899999999999999999998777643211                          00011


Q ss_pred             cH--HHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329          138 GK--SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG  170 (195)
Q Consensus       138 g~--~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~  170 (195)
                      |.  --..+-.|.-+.+.+...+..|++|.++++|
T Consensus       184 G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~dd  218 (274)
T TIGR03133       184 GVEEFDSRDRALVWRTTGGKHRFLSGDADVLVEDD  218 (274)
T ss_pred             CCCccCHHHhcccccccchHhHhhcccceEEeCCH
Confidence            10  0112222344556667788899999999874

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.85  E-value=0.00028  Score=58.81  Aligned_cols=42  Identities=36%  Similarity=0.498  Sum_probs=36.3

Q ss_pred             HHHHcCCCcEEEEECCc--ccchhHHHhhhCCEEEEeCCceeecc
Q 029329           60 SFLEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLP  102 (195)
Q Consensus        60 ~~~~~~~kp~Iaav~G~--a~ggG~~la~~~D~~va~~~a~~~~~  102 (195)
                      ..+... .|+|+.+.|.  |+||+...+..||++|+++++.+++.
T Consensus       140 ~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla  183 (301)
T PRK07189        140 VDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS  183 (301)
T ss_pred             HHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence            344444 9999999999  99999999999999999999887764

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.84  E-value=0.00045  Score=55.83  Aligned_cols=99  Identities=16%  Similarity=0.108  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHH---cCCCcEEEEECCcccchhH-HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhc
Q 029329           49 HFYVNTLRSTFSFLE---ALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS  124 (195)
Q Consensus        49 ~~~~~~~~~~~~~~~---~~~kp~Iaav~G~a~ggG~-~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~  124 (195)
                      ....+.+.+++..+.   ..+.|+|+.|-|.++|||+ .+.+.+|.++|-+++.++       +.+.             
T Consensus        87 ~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~-------------  146 (238)
T TIGR03134        87 LGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDL-------------  146 (238)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCH-------------
Confidence            334455555555554   5569999999999998876 444458988888777654       3333             


Q ss_pred             ccCCccchhhhhhcHHHHHHHHHcC--CCCCHHHHHhcCccceecCCCh
Q 029329          125 DRAGGTQRLPRLVGKSVAKDIIFTG--RKVSGKDAMSLGLVNYYVPAGQ  171 (195)
Q Consensus       125 ~~~g~~~~l~~~ig~~~a~~l~l~g--~~~~a~eA~~~Glvd~v~~~~~  171 (195)
                        .++...+-+-  .....++.-.-  ...+...+.++|+||+|+++.+
T Consensus       147 --e~aa~I~~~~--~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~  191 (238)
T TIGR03134       147 --ESMARVTKRS--VEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD  191 (238)
T ss_pred             --HHHHHHHccC--HhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence              2222211111  12333332221  2356778999999999998654

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.82  E-value=0.00088  Score=55.63  Aligned_cols=136  Identities=15%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHH-HHcCCCcEEEEECCcccchh
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF-LEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kp~Iaav~G~a~ggG   81 (195)
                      +.+.++++.+.+. .+-+|++..++      |.-+.+    .-.....+. .+...+.+ ...-..|.|+.+.|+|.||+
T Consensus       155 eKi~ra~e~A~~~-rlPlV~l~~SG------GARmQE----g~~sL~qma-k~saa~~~~~~~~~vP~Isvl~gPt~GG~  222 (296)
T CHL00174        155 EKITRLIEYATNE-SLPLIIVCASG------GARMQE----GSLSLMQMA-KISSALYDYQSNKKLFYISILTSPTTGGV  222 (296)
T ss_pred             HHHHHHHHHHHHc-CCCEEEEECCC------Cccccc----cchhhhhhH-HHHHHHHHHHHcCCCCEEEEEcCCCchHH
Confidence            4566777777665 35566665542      233322    101111111 12112233 22567899999999999997


Q ss_pred             HH-HhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           82 LE-MALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        82 ~~-la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      .. +++.||++|+.+++.+++.-.++                          ....+|..      +.-.-=+++-.++.
T Consensus       223 aas~a~l~Diiiae~~A~IgfAGPrV--------------------------Ie~t~ge~------lpe~fq~ae~l~~~  270 (296)
T CHL00174        223 TASFGMLGDIIIAEPNAYIAFAGKRV--------------------------IEQTLNKT------VPEGSQAAEYLFDK  270 (296)
T ss_pred             HHHHHHcccEEEEeCCeEEEeeCHHH--------------------------HHHhcCCc------CCcccccHHHHHhC
Confidence            65 47779999998888776653221                          00000100      00001136667789


Q ss_pred             CccceecCCChHHHHHHHHHHH
Q 029329          161 GLVNYYVPAGQAQLKALEIAQE  182 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~  182 (195)
                      |+||.|++..++.+...++.+-
T Consensus       271 G~vD~iV~r~~lr~~l~~ll~~  292 (296)
T CHL00174        271 GLFDLIVPRNLLKGVLSELFQL  292 (296)
T ss_pred             cCceEEEcHHHHHHHHHHHHHh
Confidence            9999999998887776666543

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.81  E-value=0.00083  Score=55.72  Aligned_cols=139  Identities=15%  Similarity=0.243  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.++++.+.+. .+-+|.+.-+ +++     -+.+    .......+ ..+...+.++.....|.|+++.|+|.||+.
T Consensus       142 eKi~r~~e~A~~~-~lPlV~l~dS-gGa-----RmqE----g~~sL~~~-ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a  209 (285)
T TIGR00515       142 EKFVRAIEKALED-NCPLIIFSAS-GGA-----RMQE----ALLSLMQM-AKTSAALAKMSERGLPYISVLTDPTTGGVS  209 (285)
T ss_pred             HHHHHHHHHHHHc-CCCEEEEEcC-CCc-----cccc----chhHHHhH-HHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence            3456666666554 4566666554 222     1211    11111111 122334455666789999999999999964


Q ss_pred             -HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcC
Q 029329           83 -EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLG  161 (195)
Q Consensus        83 -~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~G  161 (195)
                       .+++.+|++++.+++.+++.-.++                          +...++..      +.-+.-+++-+.+.|
T Consensus       210 as~a~~~D~iia~p~A~ig~aGprV--------------------------ie~ti~e~------lpe~~q~ae~~~~~G  257 (285)
T TIGR00515       210 ASFAMLGDLNIAEPKALIGFAGPRV--------------------------IEQTVREK------LPEGFQTSEFLLEHG  257 (285)
T ss_pred             HHHHhCCCEEEEECCeEEEcCCHHH--------------------------HHHHhcCc------cchhcCCHHHHHhCC
Confidence             567899999999998777643221                          11111110      000112456577889


Q ss_pred             ccceecCCChHHHHHHHHHHHHhh
Q 029329          162 LVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       162 lvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                      +||.|+++.++.+...++.+.+..
T Consensus       258 ~vD~iv~~~~~r~~l~~~L~~~~~  281 (285)
T TIGR00515       258 AIDMIVHRPEMKKTLASLLAKLQN  281 (285)
T ss_pred             CCcEEECcHHHHHHHHHHHHHHhh
Confidence            999999999888887777765544

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.79  E-value=0.0011  Score=55.12  Aligned_cols=141  Identities=16%  Similarity=0.225  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.++++.+.+. .+=+|.+.-+ |     |..+.+    ....... ...+...+.++.....|.|+.+.|+|.||+.
T Consensus       143 eKi~r~~e~A~~~-~lPlV~l~ds-g-----GarmqE----gi~sL~~-~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a  210 (292)
T PRK05654        143 EKIVRAVERAIEE-KCPLVIFSAS-G-----GARMQE----GLLSLMQ-MAKTSAALKRLSEAGLPYISVLTDPTTGGVS  210 (292)
T ss_pred             HHHHHHHHHHHHc-CCCEEEEEcC-C-----Ccchhh----hhhHHHh-HHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence            3456666666655 4566666543 3     222211    0000111 1122334445666789999999999999964


Q ss_pred             -HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcC
Q 029329           83 -EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLG  161 (195)
Q Consensus        83 -~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~G  161 (195)
                       .+++.+|++++.+++.+++.-.++                          +...++....      -+.-+++-+.+.|
T Consensus       211 as~a~~~D~iia~p~A~ig~aGprv--------------------------ie~~~~e~lp------e~~~~ae~~~~~G  258 (292)
T PRK05654        211 ASFAMLGDIIIAEPKALIGFAGPRV--------------------------IEQTVREKLP------EGFQRAEFLLEHG  258 (292)
T ss_pred             HHHHHcCCEEEEecCcEEEecCHHH--------------------------HHhhhhhhhh------hhhcCHHHHHhCC
Confidence             567889999999988776643211                          0111111110      0112456677899


Q ss_pred             ccceecCCChHHHHHHHHHHHHhhcC
Q 029329          162 LVNYYVPAGQAQLKALEIAQEINQKV  187 (195)
Q Consensus       162 lvd~v~~~~~~~~~a~~~a~~~~~~~  187 (195)
                      +||.|+++.++.+...++.+.+...+
T Consensus       259 ~vD~Vv~~~e~r~~l~~~L~~~~~~~  284 (292)
T PRK05654        259 AIDMIVHRRELRDTLASLLALHTKQP  284 (292)
T ss_pred             CCcEEECHHHHHHHHHHHHHHHhcCC
Confidence            99999999999888888877766554

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=97.50  E-value=0.0028  Score=51.72  Aligned_cols=140  Identities=18%  Similarity=0.284  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHH--HHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF--YVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      +.+.++++++-.+ ....|+++.+|      |.-+.+       ....  ...++...+.++.....|.|+.+..++.||
T Consensus       144 eki~ra~E~A~e~-k~P~v~f~aSG------GARMQE-------g~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGG  209 (294)
T COG0777         144 EKITRAIERAIED-KLPLVLFSASG------GARMQE-------GILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGG  209 (294)
T ss_pred             HHHHHHHHHHHHh-CCCEEEEecCc------chhHhH-------HHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccc
Confidence            4677888888766 47788887764      332221       1111  123556677788889999999999999888


Q ss_pred             -hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           81 -GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        81 -G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                       ...+++..|+.++-|.+.++|.-.++      .+                +.....++..          -=+++-.++
T Consensus       210 VsASfA~lGDi~iAEP~AlIGFAGpRV------IE----------------QTire~LPeg----------fQ~aEfLle  257 (294)
T COG0777         210 VSASFAMLGDIIIAEPGALIGFAGPRV------IE----------------QTIREKLPEG----------FQTAEFLLE  257 (294)
T ss_pred             hhHhHHhccCeeecCcccccccCcchh------hh----------------hhhcccCCcc----------hhhHHHHHH
Confidence             57999999999999999888865431      00                0001111111          112677789


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCH
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQ  188 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~  188 (195)
                      .|+||.|++..++......+...+...++
T Consensus       258 hG~iD~iv~R~elr~tla~ll~~~~~~~~  286 (294)
T COG0777         258 HGMIDMIVHRDELRTTLASLLAKLTPQPA  286 (294)
T ss_pred             cCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence            99999999998888877777766655443

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.46  E-value=0.0024  Score=57.08  Aligned_cols=129  Identities=26%  Similarity=0.345  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEecc--CcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGA--DLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      +.+.++++.+.++. +-.|.+.-+      .|.  ++.+-    -.....+.+ +.....++.. ..|+|+++.|+|.||
T Consensus        79 ~Ki~ra~~~A~~~~-~P~v~l~ds------gGa~~r~~eg----~~~l~~~g~-i~~~~~~~~~-~iP~I~vv~G~~~Gg  145 (493)
T PF01039_consen   79 EKIARAIELALENG-LPLVYLVDS------GGAFLRMQEG----VESLMGMGR-IFRAIARLSG-GIPQISVVTGPCTGG  145 (493)
T ss_dssp             HHHHHHHHHHHHHT-EEEEEEEEE------SSBCGGGGGH----HHHHHHHHH-HHHHHHHHHT-TS-EEEEEESEEEGG
T ss_pred             eeeehHHHHHHHcC-CCcEEeccc------cccccccchh----hhhhhhhHH-HHHHHHHHhc-CCCeEEEEccccccc
Confidence            45666777776653 444444332      233  33221    111222222 3334445566 999999999999999


Q ss_pred             hHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH---
Q 029329           81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD---  156 (195)
Q Consensus        81 G~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e---  156 (195)
                      |..++..||++|+.++ +.+.+.-.      .                        .+     +  ..+|+.++.++   
T Consensus       146 ~A~~~~~~d~~i~~~~~a~i~l~GP------~------------------------vv-----~--~~~Ge~~~~~~lgG  188 (493)
T PF01039_consen  146 GAYLAALSDFVIMVKGTARIFLAGP------R------------------------VV-----E--SATGEEVDSEELGG  188 (493)
T ss_dssp             GGHHHHHSSEEEEETTTCEEESSTH------H------------------------HH-----H--HHHSSCTSHHHHHB
T ss_pred             hhhcccccCccccCccceEEEeccc------c------------------------cc-----c--cccCccccchhhhh
Confidence            9999999999999998 77655321      1                        11     1  23457777654   


Q ss_pred             ----HHhcCccceecCCChHHHHHHHHHHHHh
Q 029329          157 ----AMSLGLVNYYVPAGQAQLKALEIAQEIN  184 (195)
Q Consensus       157 ----A~~~Glvd~v~~~~~~~~~a~~~a~~~~  184 (195)
                          +...|.+|.++++++   ++.+.++++.
T Consensus       189 ~~~h~~~sG~~d~v~~de~---~a~~~ir~~l  217 (493)
T PF01039_consen  189 ADVHAAKSGVVDYVVDDEE---DALAQIRRLL  217 (493)
T ss_dssp             HHHHHHTSSSSSEEESSHH---HHHHHHHHHH
T ss_pred             hhhhcccCCCceEEEechH---HHHHHHHHhh
Confidence                347899999998753   4444444443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.43  E-value=0.0053  Score=55.05  Aligned_cols=148  Identities=14%  Similarity=0.140  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHH
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE   83 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~   83 (195)
                      ...+.++.+.+. ++=+|.|.-. ++ |..|.+         .+.....+...+++..+.....|.|+.|-|.+.|||+.
T Consensus       338 K~~r~i~~a~~~-~lPlV~lvDs-~G-~~~g~~---------~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~  405 (512)
T TIGR01117       338 KIARFIRFCDAF-NIPIVTFVDV-PG-FLPGVN---------QEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL  405 (512)
T ss_pred             HHHHHHHHHHHc-CCCEEEEEeC-cC-ccccHH---------HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence            345555655543 4555555443 22 544432         22233455666777888889999999999999888665


Q ss_pred             Hhhh----CCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh----cHHHH-HHHH--HcCCCC
Q 029329           84 MALA----CDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV----GKSVA-KDII--FTGRKV  152 (195)
Q Consensus        84 la~~----~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i----g~~~a-~~l~--l~g~~~  152 (195)
                      -++.    +|++++.+++.++.-...-+.                     ...+.+.+    ....+ .+.+  ..-+..
T Consensus       406 am~~~~~~~d~~~a~p~a~~~v~~pe~a~---------------------~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~  464 (512)
T TIGR01117       406 AMCSKHLGADQVYAWPTAEIAVMGPAGAA---------------------NIIFRKDIKEAKDPAATRKQKIAEYREEFA  464 (512)
T ss_pred             HhccccCCCCEEEEcCCCeEeecCHHHHH---------------------HHHhhhhcccccCHHHHHHHHHHHHHHhhc
Confidence            5443    999999999877664332111                     00000000    01111 1110  112244


Q ss_pred             CHHHHHhcCccceecCCChHHHHHHHHHHHHh
Q 029329          153 SGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN  184 (195)
Q Consensus       153 ~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~  184 (195)
                      ++..+.+.|+||.|+++.+..+...+..+.+.
T Consensus       465 ~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~  496 (512)
T TIGR01117       465 NPYKAAARGYVDDVIEPKQTRPKIVNALAMLE  496 (512)
T ss_pred             CHHHHHhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence            68889999999999999887766666555443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=97.37  E-value=0.00068  Score=55.71  Aligned_cols=93  Identities=18%  Similarity=0.259  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccc
Q 029329           52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ  131 (195)
Q Consensus        52 ~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~  131 (195)
                      .+.+.+-+..+..++.|+|+.|-|-.-+||..=...+|.++|-++++++.-      .|.               +.++.
T Consensus       174 ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVi------sPE---------------G~AsI  232 (317)
T COG0825         174 SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVI------SPE---------------GCASI  232 (317)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeec------Chh---------------hhhhh
Confidence            345667777888999999999999998888888888999999999988641      232               22222


Q ss_pred             hhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       132 ~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      .|.   ..+++.+. ...-.+++++.+++|+||.|+|.
T Consensus       233 LWk---D~~ka~eA-Ae~mkita~dLk~lgiID~II~E  266 (317)
T COG0825         233 LWK---DASKAKEA-AEAMKITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             hhc---ChhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence            222   23344444 33468999999999999999975

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.01  E-value=0.0093  Score=53.51  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=31.7

Q ss_pred             CCCcEEEEECCcccchhHHHhhhCCEEEEeCCc-eeec
Q 029329           65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGL  101 (195)
Q Consensus        65 ~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a-~~~~  101 (195)
                      -..|.|+++.|+|.||+......||++|+.+++ .+.+
T Consensus       153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~  190 (512)
T TIGR01117       153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI  190 (512)
T ss_pred             CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence            468999999999999998888899999999974 4444

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.68  E-value=0.043  Score=49.83  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=34.5

Q ss_pred             HHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCC-ceeec
Q 029329           61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGL  101 (195)
Q Consensus        61 ~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~  101 (195)
                      ++.....|.|+++.|.|.|||......||++|+.++ +.+.+
T Consensus       200 ~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~  241 (569)
T PLN02820        200 RMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL  241 (569)
T ss_pred             HHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence            355567999999999999999999999999999875 54544

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.08  E-value=0.037  Score=50.23  Aligned_cols=113  Identities=12%  Similarity=0.031  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhh----hCCEEEEeCCceeecccccccccCCCCCccchhhhhhc
Q 029329           49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS  124 (195)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~----~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~  124 (195)
                      ....+...+++..+.....|.|+.+-|.++|+|..-.+    ..|++++.++++++.       .++             
T Consensus       422 ~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v-------mg~-------------  481 (569)
T PLN02820        422 SGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGV-------MGG-------------  481 (569)
T ss_pred             hhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEe-------cCH-------------
Confidence            34567788888889999999999999999998876665    567777777766644       332             


Q ss_pred             ccCCccchhhh-hh------------cHHHH-HHHH--HcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHH
Q 029329          125 DRAGGTQRLPR-LV------------GKSVA-KDII--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI  183 (195)
Q Consensus       125 ~~~g~~~~l~~-~i------------g~~~a-~~l~--l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~  183 (195)
                        .++...+.+ .+            ....+ ++.+  ..-+..++-.+-+.|+||.|+++.+-........+..
T Consensus       482 --e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~  554 (569)
T PLN02820        482 --AQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAA  554 (569)
T ss_pred             --HHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHh
Confidence              111111111 00            01000 1110  1122456778889999999999977655444444433

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.98  E-value=0.041  Score=44.58  Aligned_cols=112  Identities=12%  Similarity=0.059  Sum_probs=54.2

Q ss_pred             HHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhh
Q 029329           57 STFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLP  134 (195)
Q Consensus        57 ~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~  134 (195)
                      .++..+..++-||-...-|.|.+-|..|..+.-  .|++-|++++-+....-|--....+-.+--.|+.-.|......+.
T Consensus       141 AIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a  220 (275)
T KOG0840|consen  141 AIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYA  220 (275)
T ss_pred             hHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666666666888887766655543  366666665555444433111100000000011111100011112


Q ss_pred             hhhcH--HHHHHHHHcCCCCCHHHHHhcCccceecC
Q 029329          135 RLVGK--SVAKDIIFTGRKVSGKDAMSLGLVNYYVP  168 (195)
Q Consensus       135 ~~ig~--~~a~~l~l~g~~~~a~eA~~~Glvd~v~~  168 (195)
                      +..|.  ....+-+-.-+.++++||+++||||+|..
T Consensus       221 ~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~  256 (275)
T KOG0840|consen  221 KHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID  256 (275)
T ss_pred             HhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence            22221  11222233456689999999999999986

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.14  E-value=0.034  Score=49.73  Aligned_cols=123  Identities=17%  Similarity=0.087  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhC----CEEEEeCCceeeccccc--ccccCCCCCccchhhhh
Q 029329           49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC----DLRICGEAALLGLPETG--LAIIPGCSDRSLSHVIL  122 (195)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~----D~~va~~~a~~~~~e~~--~G~~p~~~~~~~~~~~~  122 (195)
                      ....+...+++..+..++.|.|..+-|.+.|+|+.-....    |++++.|+++++.-...  ..+.-.         ..
T Consensus       350 ~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~e~a~~i~~~---------~~  420 (493)
T PF01039_consen  350 AGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGPEGAASILYR---------DE  420 (493)
T ss_dssp             TTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-HHHHHHHHTH---------HH
T ss_pred             cchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecChhhhheeeeh---------hh
Confidence            3456778888999999999999999999999988666666    89988888887663322  121110         00


Q ss_pred             hcccCCccchhhhhhcHH-HHHHHHH-cCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhh
Q 029329          123 ASDRAGGTQRLPRLVGKS-VAKDIIF-TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       123 ~~~~~g~~~~l~~~ig~~-~a~~l~l-~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                      ... .    ...+.-... ....+-. .-+.-++..+.+.+++|.|+++.+..........-..+
T Consensus       421 ~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~  480 (493)
T PF01039_consen  421 LEA-A----EAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQ  480 (493)
T ss_dssp             HHH-S----CHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTT
T ss_pred             hhh-h----hcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHh
Confidence            000 0    000000000 1111111 11225788999999999999998877665555444433

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=93.51  E-value=0.28  Score=44.01  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=32.4

Q ss_pred             HHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCc
Q 029329           61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA   97 (195)
Q Consensus        61 ~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a   97 (195)
                      ++... .|.|++|-|.|.|||..+...||++|+.++.
T Consensus       159 ~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         159 RASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             HhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence            44445 9999999999999999999999999999984

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=90.66  E-value=1.7  Score=35.01  Aligned_cols=93  Identities=13%  Similarity=0.173  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHcCCCcEEEEECCcccchhH-HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccc
Q 029329           53 NTLRSTFSFLEALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ  131 (195)
Q Consensus        53 ~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~-~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~  131 (195)
                      ....+.+...+...-|+|+.+-|.+++||| .-.+.+|.+++-+++.+       -..+-                -+..
T Consensus        92 Ahla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i-------~vM~~----------------~s~A  148 (234)
T PF06833_consen   92 AHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMI-------HVMGK----------------PSAA  148 (234)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCee-------ecCCh----------------HHhH
Confidence            334455555677899999999999999997 78889999988774322       22111                0111


Q ss_pred             hhhhhhcHHHHHHHHHcCCC--CCHHHHHhcCccceecCC
Q 029329          132 RLPRLVGKSVAKDIIFTGRK--VSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       132 ~l~~~ig~~~a~~l~l~g~~--~~a~eA~~~Glvd~v~~~  169 (195)
                      +.. +.....-.++.-+--+  ++.+--.++|.++++.+.
T Consensus       149 RVT-k~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~~  187 (234)
T PF06833_consen  149 RVT-KRPVEELEELAKSVPVFAPGIENYAKLGALDELWDG  187 (234)
T ss_pred             HHh-hcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhcc
Confidence            221 1234444555555444  345777899999999874

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=88.40  E-value=0.94  Score=40.72  Aligned_cols=53  Identities=17%  Similarity=0.143  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhh----hCCEEEEeCCceee
Q 029329           48 IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLG  100 (195)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~----~~D~~va~~~a~~~  100 (195)
                      .....+....++..+.+...|.|..+-|.++|||+....    ..|+.+|.+++.++
T Consensus       379 ~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~ia  435 (526)
T COG4799         379 YGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIA  435 (526)
T ss_pred             hChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceee
Confidence            334567778888999999999999999999999865543    45556655555544

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=88.35  E-value=2  Score=31.78  Aligned_cols=53  Identities=11%  Similarity=0.121  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      .+.+.++.+.+||++++|++.-.+-+              +       -+.+.+..++.... ||+|+..-|..-
T Consensus        41 ~~~d~l~~~~~D~~t~~I~ly~E~~~--------------d-------~~~f~~~~~~a~~~-KPVv~lk~Grt~   93 (138)
T PF13607_consen   41 DFADLLEYLAEDPDTRVIVLYLEGIG--------------D-------GRRFLEAARRAARR-KPVVVLKAGRTE   93 (138)
T ss_dssp             -HHHHHHHHCT-SS--EEEEEES--S----------------------HHHHHHHHHHHCCC-S-EEEEE-----
T ss_pred             CHHHHHHHHhcCCCCCEEEEEccCCC--------------C-------HHHHHHHHHHHhcC-CCEEEEeCCCch
Confidence            36788899999999999999886311              0       13445566666656 999999998753

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=87.01  E-value=2.8  Score=34.76  Aligned_cols=54  Identities=17%  Similarity=0.255  Sum_probs=37.3

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      .+.++|+.+++||+.++|++-|.-|+      +       .++.       -.+.+.. ...+||+|+.+-|.+.
T Consensus       187 ~fid~L~~fe~Dp~T~~ivmiGEiGG------~-------aEe~-------AA~~i~~-~~~~KPVVa~iaG~ta  240 (293)
T COG0074         187 SFIDALEMFEADPETEAIVMIGEIGG------P-------AEEE-------AAEYIKA-NATRKPVVAYIAGRTA  240 (293)
T ss_pred             cHHHHHHHHhcCccccEEEEEecCCC------c-------HHHH-------HHHHHHH-hccCCCEEEEEeccCC
Confidence            46789999999999999999997321      1       1111       2223333 2345999999999876

>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=86.10  E-value=10  Score=33.65  Aligned_cols=77  Identities=13%  Similarity=0.220  Sum_probs=53.1

Q ss_pred             CCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHH---HhhhCCEEE
Q 029329           16 SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE---MALACDLRI   92 (195)
Q Consensus        16 ~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~---la~~~D~~v   92 (195)
                      -.+-.|.+... ++ |-.|.+...         ....+....++.+....+.|-|..+.|.+.||-+.   .+++-|+.+
T Consensus       383 ~~IPLi~l~ni-~G-fm~g~~~e~---------~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~y  451 (536)
T KOG0540|consen  383 RNIPLIFLQNI-TG-FMVGRAAEA---------GGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINY  451 (536)
T ss_pred             cCCcEEEEEcc-CC-ccccchhhh---------hchhhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeE
Confidence            34555555544 22 666665532         23345566777788888999999999999997554   667889999


Q ss_pred             EeCCceeeccc
Q 029329           93 CGEAALLGLPE  103 (195)
Q Consensus        93 a~~~a~~~~~e  103 (195)
                      +.|++++++--
T Consensus       452 awP~A~IavmG  462 (536)
T KOG0540|consen  452 AWPNARIAVMG  462 (536)
T ss_pred             Ecccceeeecc
Confidence            88888876644

>PLN02522 ATP citrate (pro-S)-lyase

Probab=84.09  E-value=3  Score=38.35  Aligned_cols=53  Identities=9%  Similarity=0.158  Sum_probs=37.5

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeC-CCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            4 GLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      ++.+.|+.+++||++++|++-+. |++                 +.    +.+.+..++.. ..||||+..-|.+.
T Consensus       209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg~-----------------~e----~~f~ea~~~a~-~~KPVVa~kaGrsa  262 (608)
T PLN02522        209 TLSDHVLRFNNIPQIKMIVVLGELGGR-----------------DE----YSLVEALKQGK-VSKPVVAWVSGTCA  262 (608)
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEecCch-----------------hH----HHHHHHHHHhc-CCCCEEEEeccCCC
Confidence            36788999999999999999997 431                 11    12223333333 68999999988876

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=83.58  E-value=3.6  Score=34.83  Aligned_cols=54  Identities=9%  Similarity=0.270  Sum_probs=36.7

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      ++.+.|+.+++||+.++|++-+..++     .        ...+..+|.+.        ....||+|+.+-|...
T Consensus       211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG-----~--------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa  264 (317)
T PTZ00187        211 NFIDCLKLFLNDPETEGIILIGEIGG-----T--------AEEEAAEWIKN--------NPIKKPVVSFIAGITA  264 (317)
T ss_pred             CHHHHHHHHhhCCCccEEEEEEecCC-----c--------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence            36788999999999999999997321     1        11122222221        2468999999999874

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=81.06  E-value=5  Score=33.60  Aligned_cols=75  Identities=24%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhhcCC---CcEEEEE-EeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            3 RGLKHAFETISEDS---SANVVMI-RSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         3 ~~l~~~l~~~~~d~---~v~~vvl-~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      .++.++|+.+...+   .+-+||| +|  |+.+   -||..|             .-..+.+.+..+|.|||++| ||-.
T Consensus        58 ~~I~~al~~~~~~~~~~~~Dviii~RG--GGs~---eDL~~F-------------N~e~varai~~~~~PvisaI-GHe~  118 (319)
T PF02601_consen   58 ASIVSALRKANEMGQADDFDVIIIIRG--GGSI---EDLWAF-------------NDEEVARAIAASPIPVISAI-GHET  118 (319)
T ss_pred             HHHHHHHHHHHhccccccccEEEEecC--CCCh---HHhccc-------------ChHHHHHHHHhCCCCEEEec-CCCC
Confidence            57889999998665   5666666 44  2211   133222             12357788999999999988 4443


Q ss_pred             chhHHHhhhCCEEEEeCCc
Q 029329           79 GGGLEMALACDLRICGEAA   97 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a   97 (195)
                      -- ...=+.+|.|..||++
T Consensus       119 D~-ti~D~vAd~ra~TPta  136 (319)
T PF02601_consen  119 DF-TIADFVADLRAPTPTA  136 (319)
T ss_pred             Cc-hHHHHHHHhhCCCHHH
Confidence            22 4556788899988884

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

>smart00250 PLEC Plectin repeat

Probab=80.04  E-value=1.5  Score=24.76  Aligned_cols=18  Identities=39%  Similarity=0.630  Sum_probs=17.0

Q ss_pred             cCCCCCHHHHHhcCccce
Q 029329          148 TGRKVSGKDAMSLGLVNY  165 (195)
Q Consensus       148 ~g~~~~a~eA~~~Glvd~  165 (195)
                      +|++++-.||.+.||+|.
T Consensus        18 t~~~lsv~eA~~~glid~   35 (38)
T smart00250       18 TGQKLSVEEALRRGLIDP   35 (38)
T ss_pred             CCCCcCHHHHHHcCCCCc
Confidence            799999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		4e-33
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		5e-32
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		2e-17
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		2e-17
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		3e-17
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		4e-16
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		1e-15
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		2e-15
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-15
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		2e-15
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		2e-15
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		3e-14
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		8e-14
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		1e-13
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		2e-13
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		5e-13
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		8e-13
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		1e-12
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		1e-12
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		7e-12
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		5e-11
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		5e-11
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		6e-11
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		9e-11
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		9e-11
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		1e-10
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-10
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		2e-10
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-10
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		5e-10
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-09
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-09
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-09
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-09
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-09
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-09
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-09
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-09
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-09
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-09
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		1e-08
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		3e-08
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		3e-08
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		4e-08
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		4e-08
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		7e-08
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		1e-07
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		1e-07
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		2e-07
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		3e-07
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		3e-07
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		4e-07
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		8e-07
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		1e-06
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		7e-06
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-05
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-05
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		4e-05
3gkb_A	287	Crystal Structure Of A Putative Enoyl-coa Hydratase		5e-05
2gtr_A	261	Human Chromodomain Y-Like Protein Length = 261		6e-05
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		6e-05
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		8e-05
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		1e-04
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		1e-04
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		1e-04
3h0u_A	289	Crystal Structure Of A Putative Enoyl-Coa Hydratase		1e-04
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		1e-04
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		3e-04
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		3e-04
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		7e-04

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 19/186 (10%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +++ L  A + +  D     ++IRS VP +FCAGADLKER +MS SE+  +V+ +R+  +
Sbjct: 40  LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 99
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG         
Sbjct: 100 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 150
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                  GGTQRLPR +G S+AK++IF+ R + GK+A ++GL+++ +   Q    A  KA
Sbjct: 151 ------GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKA 204
Query: 177 LEIAQE 182
           L++A+E
Sbjct: 205 LDLARE 210

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 15/172 (8%)
Query: 12  ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIA 71
           I+E+++  VV++  +  K FCAGADLKER   +  ++   V+ +R+T   +E LP P IA
Sbjct: 48  INEEANTRVVILTGAGEKAFCAGADLKERAGXNEEQVRHAVSXIRTTXEXVEQLPQPVIA 107
Query: 72  VIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ 131
            I+             CD RI  E+A LGL ET LAIIPG               AGGTQ
Sbjct: 108 AINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPG---------------AGGTQ 152
Query: 132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
           RLPRL+G   AK++I+TGR++S ++A   GLV + VP    + KA+EIA++I
Sbjct: 153 RLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKI 204

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  L  A ET  ED +   +++     K F AGAD+KE +  +  +   Y     S + 
Sbjct: 36  LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQDC--YSGKFLSHWD 92
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  +  P IA ++             CD+   GE A  G PE  L  IPG         
Sbjct: 93  HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG--------- 143
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL R VGKS+A +++ TG ++S +DA   GLV+   P      +A++ A
Sbjct: 144 ------AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA 197
Query: 181 QEI--NQKV 187
           ++I  N K+
Sbjct: 198 EKIANNSKI 206

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  L  A ET  ED +   +++     K F AGAD+KE +  +  +   Y     S + 
Sbjct: 33  LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQDC--YSGKFLSHWD 89
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  +  P IA ++             CD+   GE A  G PE  L  IPG         
Sbjct: 90  HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG--------- 140
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL R VGKS+A +++ TG ++S +DA   GLV+   P      +A++ A
Sbjct: 141 ------AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA 194
Query: 181 QEI--NQKV 187
           ++I  N K+
Sbjct: 195 EKIANNSKI 203

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  L  A ET  ED +   +++     K F AGAD+KE +  +  +   Y     S + 
Sbjct: 35  LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQDC--YSGKFLSHWD 91
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  +  P IA ++             CD+   GE A  G PE  L  IPG         
Sbjct: 92  HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG--------- 142
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL R VGKS+A +++ TG ++S +DA   GLV+   P      +A++ A
Sbjct: 143 ------AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA 196
Query: 181 QEI--NQKV 187
           ++I  N K+
Sbjct: 197 EKIANNSKI 205

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 20/184 (10%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLR-STF 59
           +L  L +  E  + D+S +V +I  +  + F AGADL E   M+  ++   +N  R   +
Sbjct: 33  LLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNE---MAEKDLAATLNDTRPQLW 88
Query: 60  SFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
           + L+A   P IA ++             CD+ + GE A  GLPE  L I+PG        
Sbjct: 89  ARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPG-------- 140
Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                  AGGTQRL R VGKS+A  ++ +G  ++ + A   GLV+   P+      AL++
Sbjct: 141 -------AGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQL 193
Query: 180 AQEI 183
           A ++
Sbjct: 194 ASKM 197

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 16/184 (8%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
             +    A + I  D    VV++ S VPK F AGAD+   R   P     +      T  
Sbjct: 36  FYKEFNAAIDDIRFDPDIKVVIVXSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLD 95
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICG-EAALLGLPETGLAIIPGCSDRSLSH 119
            +   P   IA ++             CDLR  G EA  +GLPE  L ++ G        
Sbjct: 96  KIARSPQVYIACLEGHTVGGGLEXALACDLRFXGDEAGKIGLPEVSLGVLAG-------- 147
Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                   GGTQRL RL+G S A D   TG  ++ ++A+ +GLVN   P  + + +  E 
Sbjct: 148 -------TGGTQRLARLIGYSRALDXNITGETITPQEALEIGLVNRVFPQAETRERTREY 200
Query: 180 AQEI 183
           A+++
Sbjct: 201 ARKL 204

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L  A +   ED +   +++     K F AGAD+KE + +S  +   Y +     +  L  
Sbjct: 65  LNQALKIFEEDPAVGAIVLTGG-DKAFAAGADIKEMQNLSFQDC--YSSKFLKHWDHLTQ 121
Query: 65  LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
           +  P IA ++             CD+   GE A    PE  +  IPG             
Sbjct: 122 VKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPG------------- 168
Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI- 183
             AGGTQRL R VGKS+A +++ TG ++S +DA   GLV+   P      +A++ A++I 
Sbjct: 169 --AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIA 226
Query: 184 -NQKV 187
            N K+
Sbjct: 227 SNSKI 231

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 12  ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIA 71
           + +D     ++I  S  K F AGAD+KE   ++ ++   +     +T+  L A+  PTIA
Sbjct: 64  LDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFADA--FTADFFATWGKLAAVRTPTIA 120
Query: 72  VIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ 131
            +              CD+ I  + A  G PE  L ++PG                GG+Q
Sbjct: 121 AVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGM---------------GGSQ 165
Query: 132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 191
           RL R +GK+ A D+I TGR +   +A   GLV+  VPA     +A   A  I+Q   S  
Sbjct: 166 RLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAA 225
Query: 192 RI 193
           R+
Sbjct: 226 RM 227

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 12  ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIA 71
           + +D     ++I  S  K F AGAD+KE   ++ ++   +     +T+  L A+  PTIA
Sbjct: 43  LDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFADA--FTADFFATWGKLAAVRTPTIA 99
Query: 72  VIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ 131
            +              CD+ I  + A  G PE  L ++PG                GG+Q
Sbjct: 100 AVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGM---------------GGSQ 144
Query: 132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 191
           RL R +GK+ A D+I TGR +   +A   GLV+  VPA     +A   A  I+Q   S  
Sbjct: 145 RLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAA 204
Query: 192 RI 193
           R+
Sbjct: 205 RM 206

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 12  ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIA 71
           + +D     ++I  S  K F AGAD+KE   ++ ++   +     +T+  L A+  PTIA
Sbjct: 44  LDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFADA--FTADFFATWGKLAAVRTPTIA 100
Query: 72  VIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ 131
            +              CD+ I  + A  G PE  L ++PG                GG+Q
Sbjct: 101 AVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGM---------------GGSQ 145
Query: 132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 191
           RL R +GK+ A D+I TGR +   +A   GLV+  VPA     +A   A  I+Q   S  
Sbjct: 146 RLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAA 205
Query: 192 RI 193
           R+
Sbjct: 206 RM 207

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 29  KVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXC 88
           + F AGAD+ E   ++P +       L S +  L  +  P +A +              C
Sbjct: 65  RAFAAGADIAEMVTLTPHQAR--ERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLC 122
Query: 89  DLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFT 148
           DL I  + A  G PE  L I+PG                GGTQRL R VGK+ A D+  T
Sbjct: 123 DLVIAADTARFGQPEITLGILPGL---------------GGTQRLTRAVGKAKAMDLCLT 167
Query: 149 GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
           GR ++ ++A  +GLV+  VPA     +AL +AQ I
Sbjct: 168 GRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRI 202

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 9   FETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIP 68
           F     D  A+V ++       FCAGADLK       +E+H +             L  P
Sbjct: 47  FTEFDADPEASVAVLWGDN-GTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLR--LSKP 103
Query: 69  TIAVIDXXXXXXXXXXXXXCDLRICGEAALLGL--PETGLAIIPGCSDRSLSHVILASDR 126
            IA I              CDLR+  E A+LG+     G+ +I G               
Sbjct: 104 VIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDG--------------- 148
Query: 127 AGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 186
             GT RLPRL+G S A D+I TGR V   +A+ +GLVN  V  GQA+  A  +A EI   
Sbjct: 149 --GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAF 206
Query: 187 VQSVFR 192
            Q   R
Sbjct: 207 PQQCVR 212

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 17/187 (9%)
Query: 10  ETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTL-RSTFSFLEALPIP 68
           + + +D +  VV+I     + F AGAD+KE   ++ ++    +  L + TF  +E    P
Sbjct: 42  DQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKP 100
Query: 69  TIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAG 128
            IA I              C  R   E+A LGLPE  L +IPG +               
Sbjct: 101 VIAAIHGAALGGGLEFAXSCHXRFATESAKLGLPELTLGLIPGFA--------------- 145
Query: 129 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQ 188
           GTQRLPR VGK+ A +   T   ++G +A+  GLVN            L++A++I  K  
Sbjct: 146 GTQRLPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSP 205
Query: 189 SVFRILL 195
           +  R +L
Sbjct: 206 ATARAVL 212

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPI 67
           A E    +    V+++ +   + F AGAD++E  +  P  +  ++N   + +  L  +  
Sbjct: 40  AVEAFDRNEKVRVIVL-TGRGRAFAAGADIQEMAKDDPIRLE-WLNQF-ADWDRLSIVKT 96
Query: 68  PTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRA 127
           P IA ++             CDL +   AA  G PE  L ++PG               A
Sbjct: 97  PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPG---------------A 141
Query: 128 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 167
           GGTQRL +L+G   A + ++TG ++S K+A  LG+VN  V
Sbjct: 142 GGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVV 181

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
           L  AF     D SA+V ++  +    FCAGADLK       + +H            +  
Sbjct: 40  LYSAFAEFDRDESASVAVLCGN-GGTFCAGADLKAFGTAEANAVHRTGPGPMGPSRMM-- 96
Query: 65  LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGL--PETGLAIIPGCSDRSLSHVIL 122
           L  P IA +              CDLR+  + A+ G+     G+ +I G           
Sbjct: 97  LSKPVIAAVSGYAVAGGLELALWCDLRVAEQDAVFGVFCRRWGVPLIDG----------- 145
Query: 123 ASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 173
                 GT RLPRL+G S A D+I TGR V   +A+++GL N  VP GQA+
Sbjct: 146 ------GTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLANRVVPNGQAR 190

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMSPSEIHFYVNTLRST-- 58
           L  L+ A + I  D+S   V++ SS   VF  GAD+ E        +       L +   
Sbjct: 37  LNELRQAVDAIKADASVKGVIV-SSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKI 95
Query: 59  FSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
           FS  E L +PT+A I+              D R+  ++A +GLPE  L I PG       
Sbjct: 96  FSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGF------ 149
Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                    GGT RLPRL+G   A + I +G++   +DA+ +  V+  V A +    AL+
Sbjct: 150 ---------GGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALD 200
Query: 179 I 179
           +
Sbjct: 201 L 201

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            LEA   P++A ID             C  RI   AA LGLPE  L +IPG         
Sbjct: 97  LLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGF-------- 148
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                  GGTQRLPRLVG + A ++I T + V  ++  SLGL++  VP  +    A+  A
Sbjct: 149 -------GGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWA 201
Query: 177 LEIAQEINQKVQSV 190
           L+I       V SV
Sbjct: 202 LDIVGRRKPWVSSV 215

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLK--ER-RQMSPSEIHFYVNTLRSTFSF 61
           L  A + +  D     V++ +   K F AGADL   ER  ++   E + +  +L   F  
Sbjct: 31  LLQALDDLEADPGVRAVVL-TGRGKAFSAGADLAFLERVTELGAEENYRHSLSLXRLFHR 89
Query: 62  LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           +   P PT+A ++             CDL +  E A LG  E  +  +      +L  VI
Sbjct: 90  VYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARLGYTEVKIGFVA-----ALVSVI 144
Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 181
           L            R VG+  AKD++ TGR V  ++A +LGLVN   P G+A  +A  +A+
Sbjct: 145 LV-----------RAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAE 193
Query: 182 EINQKVQSVFRI 193
           E+ +   +  R+
Sbjct: 194 EVAKNAPTSLRL 205

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 29/199 (14%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ--MSP-----SEIHFYVN 53
             R L   F+ IS+DS    V++ S   K+F +G DL +     + P     + I +Y+ 
Sbjct: 32  FWRELVECFQKISKDSDCRAVVV-SGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLR 90
Query: 54  TL----RSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAII 109
            L    + TF+ +E  P P IA I              CD+R C + A   + E  +   
Sbjct: 91  DLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVG-- 148
Query: 110 PGCSDRSLSHVILASDRAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
                       LA+D  G  QRLP+++G +S+  ++ FT RK+   +A+  GLV+   P
Sbjct: 149 ------------LAAD-VGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFP 195
Query: 169 AGQAQLK-ALEIAQEINQK 186
                L  A  +A +I+ K
Sbjct: 196 DKDVMLNAAFALAADISSK 214

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 26/182 (14%)
Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS-----FL 62
           A E    D     V+I  +  K FCAGADLK    +S  E  ++       F+     F+
Sbjct: 50  ALEEAQRDPEVWAVVITGAGDKSFCAGADLK---AISRGENLYHAEHPEWGFAGYVHHFI 106
Query: 63  EALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVIL 122
           +    PTIA ++              DL I  E+A  GLPE    +I G           
Sbjct: 107 DK---PTIAAVNGTALGGGSELALASDLVIACESASFGLPEVKRGLIAG----------- 152
Query: 123 ASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 182
               AGG  R+   + + VA +++ TG  ++  DA+  GL+N  VP G     AL +A+ 
Sbjct: 153 ----AGGVFRIVEQLPRKVALELVLTGEPMTASDALRWGLINEVVPDGTVVEAALALAER 208
Query: 183 IN 184
           I 
Sbjct: 209 IT 210

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ---MSPSEIHFYVNTLRSTFSFLEA 64
           AF    +DS+  V+++  +  K FC+G D K R     +   EI   +N L      +  
Sbjct: 47  AFTKARDDSNIGVIILTGAGGKAFCSGGDQKVRGHGGYVGEDEIP-RLNVLDLQ-RLIRV 104
Query: 65  LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
           +P P IA++              CDL I  + A+ G  +TG  +  G  D          
Sbjct: 105 IPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFG--QTGPKV--GSFDGGY------- 153
Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 184
               G   L R+VG   A++I +  R+ + ++A+ +GLVN  VP  Q + + ++ AQEI 
Sbjct: 154 ----GAGYLARIVGHKKAREIWYLCRQYTAQEALEMGLVNKVVPLEQLEEETVKWAQEIL 209
Query: 185 QKVQSVFRIL 194
           +K  +  R L
Sbjct: 210 EKSPTAIRFL 219

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 23/201 (11%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M++ +  A++ +  D      ++ +     FCAG DLK   +  P +     +   S   
Sbjct: 48  MMQIMVEAWDRVDNDPDIRCCIL-TGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRID 106
Query: 61  FL---EALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            L     L  P IA ++              D+R+  E+A  G+ E   ++ P       
Sbjct: 107 ALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYP------- 159
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                     G   RL R +  +VA D++ TGR ++  +A  +GLV + VP GQA  KAL
Sbjct: 160 --------MGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKAL 211
Query: 178 EIAQEINQK----VQSVFRIL 194
           EIA+ I       VQ++ R +
Sbjct: 212 EIAEIIAANGPLAVQAILRTI 232

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 23/194 (11%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++R +++  +    D +   ++I       FCAGAD+      +P         L S   
Sbjct: 48  VIREVRNGLQKAGSDHTVKAIVI-CGANGNFCAGADIHGFSAFTPGL------ALGSLVD 100
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            ++    P +A I              C  RI    A +GLPE  L I+PG         
Sbjct: 101 EIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPG--------- 151
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 A GTQ LPR+VG  VA D+I +G+ +S  +A+ LG+++  V +   + +A++ A
Sbjct: 152 ------ARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE-EAIKFA 204
Query: 181 QEINQKVQSVFRIL 194
           Q+I  K     RI 
Sbjct: 205 QKIIDKPIEPRRIF 218

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 23/194 (11%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++R +++  +    D +   ++I       FCAGAD+      +P         L S   
Sbjct: 33  VIREVRNGLQKAGSDHTVKAIVI-CGANGNFCAGADIHGFSAFTPGL------ALGSLVD 85
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            ++    P +A I              C  RI    A +GLPE  L I+PG         
Sbjct: 86  EIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPG--------- 136
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 A GTQ LPR+VG  VA D+I +G+ +S  +A+ LG+++  V +   + +A++ A
Sbjct: 137 ------ARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE-EAIKFA 189
Query: 181 QEINQKVQSVFRIL 194
           Q+I  K     RI 
Sbjct: 190 QKIIDKPIEPRRIF 203

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML  L  AF T++ED S   V++ +S  K FCAG DLKE R   PS  ++     R T  
Sbjct: 54  MLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRA-EPSREYYEKLFARCTDV 111
Query: 61  FL--EALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
            L  + LP P IA +              CDL +    A   +  +G+ +   CS   ++
Sbjct: 112 MLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAV--SGINVGLFCSTPGVA 169
Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 167
                         L R VG+  A +++ TG  VS  DA  LGLVN  V
Sbjct: 170 --------------LSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVV 204

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFS 60
           R L  A++ + +D +  V+++ +  P  FC+GA +    +   +P    F  + ++    
Sbjct: 37  RQLGAAYQRLDDDPAVRVIVL-TGAPPAFCSGAQISAAAETFAAPRNPDFSASPVQPAAF 95
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L     P IA ++              D+RI  E     +P+    + P     +L+H 
Sbjct: 96  ELR---TPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPD----ALAHW 148
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
            L           PRLVG +VA +++ TG   S + A+  GL N  +PAG+    AL +A
Sbjct: 149 TL-----------PRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMA 197
Query: 181 QEINQKV 187
            +I   V
Sbjct: 198 HDIATNV 204

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 15/156 (9%)
Query: 31  FCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDL 90
           F AG DL E R+   +E   +  T    F  ++   +P IA +                +
Sbjct: 71  FSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHI 130
Query: 91  RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGR 150
           R+   +A   LPE    I  G                GG+ RLPRL+G +   D++ TGR
Sbjct: 131 RVAEASAYYALPEGSRGIFVG---------------GGGSVRLPRLIGVARMADMMLTGR 175
Query: 151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 186
             S  + +  G   Y +  G A  KALE+   + Q 
Sbjct: 176 VYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 28/185 (15%)
Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ--MSP-----SEIHFYVNT 54
            R +   F  IS D+    V+I S   K+F AG DL +     + P     + I +Y+  
Sbjct: 60  WREMVECFNKISRDADCRAVVI-SGAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRD 118
Query: 55  L----RSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIP 110
           +    + TF+ +E  P P IA +              CD+R C + A   + E  +    
Sbjct: 119 IITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVG--- 175
Query: 111 GCSDRSLSHVILASDRAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169
                      LA+D  G  QRLP+++G +S+  ++ FT RK+   +A+  GLV+   P 
Sbjct: 176 -----------LAAD-VGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPD 223
Query: 170 GQAQL 174
            +  L
Sbjct: 224 KEVML 228

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 23/194 (11%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++R +++  +    D +   ++I       FCAGAD+      +P         L S   
Sbjct: 48  VIREVRNGLQKAGSDHTVKAIVI-CGANGNFCAGADIHGFSAFTPGL------ALGSLVD 100
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            ++    P +A I              C  RI    A +GLP   L I+PG         
Sbjct: 101 EIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPAVTLGILPG--------- 151
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 A GTQ LPR+VG  VA D+I +G+ +S  +A+ LG+++  V +   + +A++ A
Sbjct: 152 ------ARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE-EAIKFA 204
Query: 181 QEINQKVQSVFRIL 194
           Q+I  K     RI 
Sbjct: 205 QKIIDKPIEPRRIF 218

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEATFGLSEINWGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLY----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLY----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLY----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLM----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEATFGLSEINWGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLY----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLY----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEATFGLSEINWGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLY----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEATFGLSEINYGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLY----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 3   RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMS--PSEIHFYVNTLRSTF 59
           R +    ET+ +D +A V+++ +   + + AG DLKE  R++   P  +   +    S +
Sbjct: 39  REMIDVLETLEQDPAAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQW 97
Query: 60  SF--LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            +  L     PTIA+++             CDL IC + A  GL E    I PG    +L
Sbjct: 98  QWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINYGIPPG----NL 153
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
               +A D  G  Q L            I TG+   G+ A  +GLVN  VP  Q +   +
Sbjct: 154 VSKAMA-DTVGHRQSLY----------YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202
Query: 178 EIAQEINQKVQSVFR 192
           E+A+ + +K   V R
Sbjct: 203 ELARNLLEKNPVVLR 217

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 3   RGLKHAFETISEDSSANV-VMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF 61
           +GL  A + +  DSSA++ V I +     FCAG DLK       + +            F
Sbjct: 37  QGLAAAADQL--DSSADLSVAIITGAGGNFCAGMDLK-------AFVSGEAVLSERGLGF 87
Query: 62  LEALP-IPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
               P  P IA ++             CDL + G +A  G+PE    ++ G         
Sbjct: 88  TNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAG--------- 138
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGG  RLP  +   VA ++  TG   + +DA   G +N  V  GQA   ALE+A
Sbjct: 139 ------AGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELA 192
Query: 181 QEIN 184
            +I 
Sbjct: 193 AKIT 196

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYV-NTLRSTF 59
           ML+ L+      ++ +   V++I +  P VF +G DLKE  +    + H  V  T     
Sbjct: 61  MLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDLKELTEEQGRDYHAEVFQTCSKVM 119
Query: 60  SFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             +   P+P IA+++             CD+ +  + +    P   + +   CS   ++ 
Sbjct: 120 MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLF--CSTPGVA- 176
Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                        L R V + VA +++FTG  +S ++A+  GL++  VP  + Q + + I
Sbjct: 177 -------------LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRI 223
Query: 180 AQEI 183
           A++I
Sbjct: 224 ARKI 227

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 15  DSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTI 70
           D +  V+++  +  K FC+G D K R         S +H ++N L      +   P P +
Sbjct: 70  DDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVH-HLNVLDFQRQ-IRTCPKPVV 127
Query: 71  AVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT 130
           A++              CDL I  + A+ G  +TG  +              + D   G 
Sbjct: 128 AMVAGYSIGGGHVLHMMCDLTIAADNAIFG--QTGPKV-------------GSFDGGWGA 172
Query: 131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSV 190
             + R+VG+  A++I F  R+   K A+ +GLVN  VP    + + +   +E+ Q     
Sbjct: 173 SYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMA 232
Query: 191 FRIL 194
            R L
Sbjct: 233 LRCL 236

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ---MSPSEIHFYVNTLRSTFSFLEA 64
           AF    +D + +V+++       FC+G D K+R     +   +I   +N L      +  
Sbjct: 48  AFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIP-RLNVL-DLQRLIRI 105
Query: 65  LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS 124
           +P P IA++              CDL I  + A+ G  +TG  +              + 
Sbjct: 106 IPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFG--QTGPKV-------------GSF 150
Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 184
           D   G+  L R+VG   A++I +  R+ + ++A+ +GLVN  VP  + + + ++  +EI 
Sbjct: 151 DAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIM 210
Query: 185 QKVQSVFRIL 194
           +   +  R L
Sbjct: 211 KHSPTALRFL 220

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 15  DSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTI 70
           D +  V+++  +  K FC+G D K R         S +H ++N L      +   P P +
Sbjct: 66  DDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVH-HLNVLDFQRQ-IRTCPKPVV 123
Query: 71  AVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT 130
           A++              CDL I  + A+ G  +TG  +              + D   G 
Sbjct: 124 AMVAGYSIGGGHVLHMMCDLTIAADNAIFG--QTGPKV-------------GSFDGGWGA 168
Query: 131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSV 190
             + R+VG+  A++I F  R+   K A+ +GLVN  VP    + + +   +E+ Q     
Sbjct: 169 SYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMA 228
Query: 191 FRIL 194
            R L
Sbjct: 229 LRCL 232

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 29  KVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXC 88
           ++F AG D+ E R ++  E              + A+P PT+A +               
Sbjct: 78  EIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAA 137
Query: 89  DLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFT 148
           D R+ G+    G  E    +IPG                 G  RL R+VG S AK+++F+
Sbjct: 138 DWRVSGDNVKFGATEILAGLIPGGG---------------GMGRLTRVVGSSRAKELVFS 182
Query: 149 GRKVSGKDAMSLGLVNYYV 167
           GR    ++A++LGL++  V
Sbjct: 183 GRFFDAEEALALGLIDDMV 201

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 17/184 (9%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTF 59
           M+     A++ I  D      ++ +     +C G DL +   +   S       T+    
Sbjct: 37  MVSQFAAAWDEIDHDDGIRAAIL-TGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGL 95
Query: 60  SFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
                L  P IA ++              D+R+  E A  GLPE    ++PG        
Sbjct: 96  LLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPG-------- 147
Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                  AG   RL R +  + A ++I TG  ++  +A   GLV + VPAG A  KA  +
Sbjct: 148 -------AGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSL 200
Query: 180 AQEI 183
           A  I
Sbjct: 201 ADRI 204

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 65/169 (38%), Gaps = 20/169 (11%)
Query: 4   GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE--RRQMSPSEIHFYVNTLRSTFSF 61
           G+  A E    D     V++  +  K FCAGADLK   RR+      H           F
Sbjct: 40  GVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHF 99
Query: 62  LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           ++    PTIA ++              DL +  E A  GLPE    +I            
Sbjct: 100 IDK---PTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAA---------- 146
Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170
                AGG  R+   + + VA  ++ TG  +S   A   GL+N  V AG
Sbjct: 147 -----AGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAG 190

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 65/169 (38%), Gaps = 20/169 (11%)
Query: 4   GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE--RRQMSPSEIHFYVNTLRSTFSF 61
           G+  A E    D     V++  +  K FCAGADLK   RR+      H           F
Sbjct: 40  GVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHF 99
Query: 62  LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVI 121
           ++    PTIA ++              DL +  E A  GLPE    +I            
Sbjct: 100 IDK---PTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAA---------- 146
Query: 122 LASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170
                AGG  R+   + + VA  ++ TG  +S   A   GL+N  V AG
Sbjct: 147 -----AGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAG 190

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Query: 15  DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF---LEALPIPTIA 71
           D +  V+++     K FCAG D K R      +    V+ L +   F   +   P P +A
Sbjct: 69  DDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHL-NVLDFQRQIRTCPKPVVA 127
Query: 72  VIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQ 131
            +              CDL I  E A+ G  +TG  +              + D   G  
Sbjct: 128 XVAGYSIGGGHVLHXXCDLTIAAENAIFG--QTGPKV-------------GSFDGGWGAS 172
Query: 132 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 191
              R+VG+  A++I F  R+   + A+  GLVN  VP    + + +   +E  Q      
Sbjct: 173 YXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTVVPLADLEKETVRWCREXLQNSPXAL 232
Query: 192 RIL 194
           R L
Sbjct: 233 RCL 235

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 70/188 (37%), Gaps = 25/188 (13%)
Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPI 67
           A      D   +VV+I  + P VFCAG DLKE    S          L        AL  
Sbjct: 43  ALADAETDDDVDVVIITGADP-VFCAGLDLKELGGSS---------ALPDISPRWPALTK 92
Query: 68  PTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRA 127
           P I  I+             CD+ I  E A        + ++P                 
Sbjct: 93  PVIGAINGAAVTGGLELALYCDILIASENARFADTHARVGLLPTW--------------- 137
Query: 128 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 187
           G + RLP+ VG  +A+ +  TG  +S  DA+  GLV   VP  Q    A  +A  I    
Sbjct: 138 GLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQLLGAAQAVAASIVGNN 197
Query: 188 QSVFRILL 195
           Q+  R LL
Sbjct: 198 QNAVRALL 205

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 70/188 (37%), Gaps = 25/188 (13%)
Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPI 67
           A      D   +VV+I  + P VFCAG DLKE    S          L        AL  
Sbjct: 60  ALADAETDDDVDVVIITGADP-VFCAGLDLKELGGSS---------ALPDISPRWPALTK 109
Query: 68  PTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRA 127
           P I  I+             CD+ I  E A        + ++P                 
Sbjct: 110 PVIGAINGAAVTGGLELALYCDILIASENARFADTHARVGLLPTW--------------- 154
Query: 128 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 187
           G + RLP+ VG  +A+ +  TG  +S  DA+  GLV   VP  Q    A  +A  I    
Sbjct: 155 GLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQLLGAARAVAASIVGNN 214
Query: 188 QSVFRILL 195
           Q+  R LL
Sbjct: 215 QNAVRALL 222

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 17/185 (9%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +L  L  A +   ED     +++ +   + F AG DL E     P +   ++        
Sbjct: 28  LLDALYAALKEGEEDREVRALLL-TGAGRAFSAGQDLTEFGDRKP-DYEAHLRRYNRVVE 85
Query: 61  FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L  L  P +  ++              DLR+    A        + ++P   D  LS +
Sbjct: 86  ALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVP---DSGLSFL 142
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                       LPRLVG + A++++    ++S ++A++LGLV+  VPA +   +AL +A
Sbjct: 143 ------------LPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLA 190
Query: 181 QEINQ 185
           +E+ Q
Sbjct: 191 KELAQ 195

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 33/202 (16%)
Query: 5   LKHAFETISEDSSANVVMIRSSVPK-----VFCAGADLKER-------RQMSPSEIHFYV 52
           L  AF    ED+   VV++  + P       FC+G D   R        Q +P      +
Sbjct: 42  LYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPR-----L 96
Query: 53  NTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGC 112
           N L      + ++P   IA++              CDL I  + A+ G  +TG  +  G 
Sbjct: 97  NVL-DLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFG--QTGPKV--GS 151
Query: 113 SDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 172
            D              G+  L R+VG+  A++I +  R+ S ++A  +G+VN  VP  + 
Sbjct: 152 FDGGF-----------GSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRL 200
Query: 173 QLKALEIAQEINQKVQSVFRIL 194
           + + ++ A+EI  K     R L
Sbjct: 201 EEEGIQWAKEILSKSPLAIRCL 222

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 29/197 (14%)
Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE--RRQMSPSEIHFYVNTLRSTFSFL 62
           L  A      D   +V++I     ++FCAG DLKE  R +  P E   +V  L    S L
Sbjct: 38  LHDALRRAXGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSAL 96
Query: 63  ----EALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLP---ETGLAIIPGCSDR 115
                  P PTIA+++             CDL     AA   LP     G    P  +  
Sbjct: 97  XLDLAHCPKPTIALVEGIATAAGLQLXAACDLAYASPAARFCLPGVQNGGFXTTPAVA-- 154
Query: 116 SLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 175
                            + R++G+    +   TG       A++ GL+N  +P       
Sbjct: 155 -----------------VSRVIGRRAVTEXALTGATYDADWALAAGLINRILPEAALATH 197
Query: 176 ALEIAQEINQKVQSVFR 192
             ++A  +  + Q+  R
Sbjct: 198 VADLAGALAARNQAPLR 214

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 25/182 (13%)
Query: 15  DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID 74
           D SA  +++ +     FCAGADL        +    Y + L      ++A P+P +  I+
Sbjct: 62  DGSARAIVL-TGQGTAFCAGADLS-----GDAFAADYPDRLIELHKAMDASPMPVVGAIN 115
Query: 75  XXXXXXXXXXXXXCDLRICGEAALLGLPET--GLAIIPGCSDRSLSHVILASDRAGGTQR 132
                        CDLR+    A    P +  GLA+     + S+             +R
Sbjct: 116 GPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLAL----DNWSI-------------RR 158
Query: 133 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 192
           L  LVG   A+ ++ +  K++ + A+  G+ N       AQ  A EIA+     +Q   R
Sbjct: 159 LSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKR 218
Query: 193 IL 194
           +L
Sbjct: 219 VL 220

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 25/189 (13%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF---YVNTLRS 57
           +L  L  A+   +ED+  +V+++R++  K F AG DL+    + P ++     Y +  R 
Sbjct: 48  LLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPV-PDKLTLEFIYAHESRR 105
Query: 58  TFSF---LEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSD 114
              +      +P P+IA +              CDL I  E AL              SD
Sbjct: 106 YLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALF-------------SD 152
Query: 115 RSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 174
             +   I   +  G T  L    G   AK+I+FTGR ++ ++    G+VN  VP  +   
Sbjct: 153 PVVLMDIGGVEYHGHTWEL----GPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDA 208
Query: 175 KALEIAQEI 183
           +   +A EI
Sbjct: 209 ETRALAGEI 217

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +L  L  A+   +ED+   V+++R++  K F AG DL+   ++ P +I            
Sbjct: 51  LLDELDAAWTRAAEDNEVKVIILRAN-GKHFSAGHDLRGGGEV-PEKISLEFIIQHEARR 108
Query: 61  FLE------ALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSD 114
           +L+       +P P+IA +              CDL +  + AL   P   L  I G   
Sbjct: 109 YLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILASDDALFSDP-VALMGIGGV-- 165
Query: 115 RSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 174
                     +  G T  L    G   AK+I+FTGR ++ ++A   G+VN  V   +   
Sbjct: 166 ----------EYHGHTWEL----GPRKAKEILFTGRALTAEEAERTGMVNRVVARDELDA 211
Query: 175 KALEIAQEI 183
           +  E+A++I
Sbjct: 212 QTRELAEQI 220

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 21/172 (12%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL----KERRQMSPSEIHFYVNTLR 56
           M+  +         D S   V++  +  +  CAG D+       +        F+ +  R
Sbjct: 37  MVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYR 96
Query: 57  STFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRS 116
              + +   P P ++++D              ++R+  +   + +PE G+  IP      
Sbjct: 97  LN-AHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDV---- 151
Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
                      GGT  L R  GK +      TG   SG DA+ +G  ++YVP
Sbjct: 152 -----------GGTYLLSRAPGK-LGLHAALTGAPFSGADAIVMGFADHYVP 191

>pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---------SPSEIHFY 51
           M+R L+    T+++DSS  V++  S+ P+ F A  D++   +M         +P++    
Sbjct: 36  MMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPAD---- 91
Query: 52  VNTLRSTFSFLEALPIPTIA-VIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIP 110
           VN  ++    +   P  TI  +                      E A LG  E  + IIP
Sbjct: 92  VNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIP 151
Query: 111 GCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170
           G                GGTQ L   VG++ A +++ T      + A S G +N  +PA 
Sbjct: 152 G---------------GGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPAD 196
Query: 171 Q 171
           +
Sbjct: 197 E 197

>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGAD-------LKERRQMSPSEIHFYVN 53
           ++R ++ A  T + D S  V++  S+V  VFC G D       L + R+   +++   + 
Sbjct: 34  VMREVQSALSTAAADDSKLVLL--SAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIR 91
Query: 54  TLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIP-GC 112
              +TF   +    P I  ++             CD+    E A    P T     P GC
Sbjct: 92  NFVNTFIQFKK---PIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGC 148
Query: 113 SDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 164
           S                T   P+++G + A +++ +GRK++ ++A   GLV+
Sbjct: 149 S----------------TVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVS 184

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 66/170 (38%), Gaps = 22/170 (12%)
Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-------SPSEIHFYVNTLRS 57
            K     IS D+    V+I +   K FC+GAD K    +        P+     +  L  
Sbjct: 56  FKQMLVDISHDNDVRAVVI-TGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDE 114
Query: 58  TFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSL 117
               L  +  P IA I+             CD+R+  + A       G+      S+  L
Sbjct: 115 VILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYF--RAAGINNGLTASELGL 172
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 167
           S++            LPR +G S A DI+ TGR V   +A  +GLV+  V
Sbjct: 173 SYL------------LPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKV 210

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 22/196 (11%)
Query: 4   GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLE 63
           GL   ++ +++D +A   +I +   + F AG D    +++S ++      T+R     + 
Sbjct: 59  GLARLWQRLTDDPTARAAVI-TGAGRAFSAGGDFGYLKELS-ADADLRAKTIRDGREIVL 116
Query: 64  ALP---IPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +    IP +A ++              D+    E A L  P   + ++           
Sbjct: 117 GMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLV----------- 165
Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV--PAGQAQLKALE 178
             A+D  GG    P  +   +AK+   TG ++S + A+ LGL N+    P  +A   A +
Sbjct: 166 --AAD--GGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVADDPVAEAIACAKK 221
Query: 179 IAQEINQKVQSVFRIL 194
           I +   Q V+S  R+L
Sbjct: 222 ILELPQQAVESTKRVL 237

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 19/171 (11%)
Query: 2   LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF 61
           +R +    +   +D    +++I+ +  K FCAG D++   +   ++        R  +  
Sbjct: 35  IRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYXL 94
Query: 62  LEAL---PIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
             A+     P +A+I                 R+  E  L   PET + + P        
Sbjct: 95  NNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRVATEKCLFAXPETAIGLFPD------- 147
Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169
                    GG   LPRL GK +   +  TG ++ G+D    G+  ++V +
Sbjct: 148 --------VGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDS 189

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGAD-------LKERRQMSPSEIHFYVN 53
           +++ + +A  + + D S  V+   S+   VFC G D       L+  R  +  E+   V+
Sbjct: 52  VIKEIVNALNSAAADDSKLVLF--SAAGSVFCCGLDFGYFVKHLRNNRNTASLEM---VD 106
Query: 54  TLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIP-GC 112
           T+++  +       P +  ++             CDL    E A    P T     P GC
Sbjct: 107 TIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGC 166
Query: 113 SDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 164
           S  +                 P+++GK+ A +++  GRK++ ++A + GLV+
Sbjct: 167 SSITF----------------PKMMGKASANEMLIAGRKLTAREACAKGLVS 202

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 20/180 (11%)
Query: 8   AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPI 67
           + E +  D S   V++ S  P VF AG DL E    SP+    Y   ++  +  L    +
Sbjct: 39  SLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNL 98
Query: 68  PTIAVIDXXXXXXXXXXXXXCDLRICGEAA--LLGLPETGLAII-PGCSDRSLSHVILAS 124
             ++ I+             CD RI  +     +GL ET L II P     +L + I   
Sbjct: 99  VLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTI--- 155
Query: 125 DRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE-IAQEI 183
                        G   A+  +  G      +A+ +G+V+  VP  Q Q  AL  IAQ +
Sbjct: 156 -------------GHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWM 202

>pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 59  FSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICG-EAALLGLPETGLAIIPGCSDRSL 117
           F  L  LP  TIA +              CD+R    E A+LG PE G+   PG      
Sbjct: 96  FRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPG------ 149
Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
                    AG  Q L RL+G+  A + + T        A   G VN  VP
Sbjct: 150 ---------AGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVP 191

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGAD-------LKERRQMSPSEIHFYVN 53
           +++ + +A  + + D S  V+   S+   VFC G D       L+  R  +  E+   V+
Sbjct: 33  VIKEMVNALNSAAADDSKLVLF--SAAGSVFCCGLDFGYFVRHLRNDRNTASLEM---VD 87
Query: 54  TLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIP-GC 112
           T+++  +       P +  ++             CDL    E A    P T     P GC
Sbjct: 88  TIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGC 147
Query: 113 SDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170
           S  +                 P+++GK+ A +++  GRK++ ++A + GLV+     G
Sbjct: 148 SSITF----------------PKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTG 189

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 20/158 (12%)
Query: 15  DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTFSF---LEALPIPTI 70
           D    +V+I +  P+ FCAG D+ E      +  H F  +  R  +     + A P P +
Sbjct: 66  DPEVELVVIDAEGPRAFCAGGDIAELHGRGVAGDHAFGQDFWRVEYRXNDRIAAFPKPIV 125
Query: 71  AVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT 130
           ++                  RI GE + +  PE  + ++P                 GGT
Sbjct: 126 SLXQGFTXGGGVGLGCHARHRIVGETSQISXPECAIGLVPDV---------------GGT 170
Query: 131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
             L R  G+ +   +  TG +    DA+  G  + +VP
Sbjct: 171 HLLARAPGR-IGVWLGLTGARXGPGDAIFAGFADRFVP 207

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 31/193 (16%)
Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIH-FYVNTLRSTFSFL 62
           L       S D +  VV++ +     FCAGADL E     SPS  +   V   R   + +
Sbjct: 43  LHQGLRDASSDPAVRVVVL-AHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALM 101
Query: 63  EAL---PIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
            A+    +P IA ID             CD+ + G  +   L E  + + P     +L  
Sbjct: 102 RAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTL-- 159
Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                        LP+L  ++ A+    TG K   + A  +GL+          + A ++
Sbjct: 160 -------------LPKLSARAAAR-YYLTGEKFDARRAEEIGLIT---------MAAEDL 196
Query: 180 AQEINQKVQSVFR 192
              I+Q V  V R
Sbjct: 197 DAAIDQLVTDVGR 209

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 28/171 (16%)
Query: 5   LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR--------QMSPSEIHFYVNTLR 56
           L    + +  D +   +++ +   + FCAG DL +R          +  S   FY   +R
Sbjct: 47  LAECLKQVERDDTIRCLLL-TGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVR 105
Query: 57  STFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGCSDRS 116
                L  LP P I  ++              D+ I   +A   +  + L +IP C    
Sbjct: 106 R----LAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDC---- 157
Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 167
                      GGT  LPR+ G++ A  +   G ++S + A   G++   V
Sbjct: 158 -----------GGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVV 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	3e-78
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	5e-78
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	2e-70
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	7e-67
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	2e-66
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	5e-65
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	8e-64
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-62
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	2e-62
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	2e-62
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	2e-62
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	2e-61
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	4e-61
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	9e-61
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	2e-59
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	8e-59
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	9e-59
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	5e-58
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	7e-58
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	1e-57
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	2e-57
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	4e-57
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	7e-57
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	3e-56
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	3e-56
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	3e-56
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	7e-56
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	9e-56
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-55
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	2e-55
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	4e-55
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	5e-55
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	3e-54
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	5e-54
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	6e-54
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	8e-54
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	1e-53
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	3e-53
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	5e-53
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	8e-53
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	1e-52
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	4e-52
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	5e-52
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-51
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	1e-51
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	2e-51
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	3e-51
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	5e-51
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	8e-51
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-50
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	2e-50
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	3e-50
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	3e-50
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	1e-49
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	7e-49
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-09
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-48
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	3e-48
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	6e-48
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	8e-48
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	1e-47
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	7e-47
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	7e-47
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	7e-46
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	1e-45
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	2e-45
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	2e-45
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	4e-45
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-44
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	5e-40
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	5e-40
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	7e-39
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-24
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-23

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  233 bits (598), Expect = 3e-78
 Identities = 84/190 (44%), Positives = 123/190 (64%), Gaps = 19/190 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +++ L  A + +  D     ++IRS VP +FCAGADLKER +MS SE+  +V+ +R+  +
Sbjct: 40  LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 99

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  LP+PTIA IDG ALGGGLE+ALACD+R+   +A +GL ET LAIIPG         
Sbjct: 100 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 150

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKA 176
                  GGTQRLPR +G S+AK++IF+ R + GK+A ++GL+++ +   Q    A  KA
Sbjct: 151 ------GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKA 204

Query: 177 LEIAQEINQK 186
           L++A+E   +
Sbjct: 205 LDLAREFLPQ 214

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  233 bits (596), Expect = 5e-78
 Identities = 84/186 (45%), Positives = 118/186 (63%), Gaps = 15/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +L  L++    I+E+++  VV++  +  K FCAGADLKER  M+  ++   V+ +R+T  
Sbjct: 37  LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTME 96

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +E LP P IA I+G ALGGG E++LACD RI  E+A LGL ET LAIIPG         
Sbjct: 97  MVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPG--------- 147

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRLPRL+G   AK++I+TGR++S ++A   GLV + VP    + KA+EIA
Sbjct: 148 ------AGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIA 201

Query: 181 QEINQK 186
           ++I   
Sbjct: 202 EKIASN 207

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  213 bits (546), Expect = 2e-70
 Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 16/187 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
             +    A + I  D    VV++ S VPK F AGAD+   R   P     +      T  
Sbjct: 36  FYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLD 95

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGE-AALLGLPETGLAIIPGCSDRSLSH 119
            +   P   IA ++G  +GGGLEMALACDLR  G+ A  +GLPE  L ++ G        
Sbjct: 96  KIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAG-------- 147

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                   GGTQRL RL+G S A D+  TG  ++ ++A+ +GLVN   P  + + +  E 
Sbjct: 148 -------TGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREY 200

Query: 180 AQEINQK 186
           A+++   
Sbjct: 201 ARKLANS 207

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  205 bits (523), Expect = 7e-67
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 16/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           + R +  A + +        V++     ++F AG D+ E R ++  E             
Sbjct: 51  VYREIVAAADELGRRDDIGAVVLFGG-HEIFSAGDDMPELRTLNAPEADTAARVRLEAID 109

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            + A+P PT+A + G ALG GL +ALA D R+ G+    G  E    +IPG         
Sbjct: 110 AVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPG--------- 160

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  GG  RL R+VG S AK+++F+GR    ++A++LGL++  V        A+  A
Sbjct: 161 ------GGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWA 214

Query: 181 QEINQK 186
           +   + 
Sbjct: 215 RRYLEC 220

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  203 bits (519), Expect = 2e-66
 Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 17/188 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
            L  L  + E +  D S   V++ S  P VF AG DL E    SP+    Y   ++  + 
Sbjct: 32  FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWL 91

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGCSDRSLS 118
            L    +  ++ I+GA   GG  +AL CD RI  +     +GL ET L II         
Sbjct: 92  RLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAP------- 144

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                         L   +G   A+  +  G      +A+ +G+V+  VP  Q Q  AL 
Sbjct: 145 --------FWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALS 196

Query: 179 IAQEINQK 186
              +    
Sbjct: 197 AIAQWMAI 204

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  200 bits (511), Expect = 5e-65
 Identities = 56/186 (30%), Positives = 81/186 (43%), Gaps = 18/186 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  LK     I        V+I       F AG DL E R+   +E   +  T    F 
Sbjct: 44  LMAALKDCLTDI--PDQIRAVVIHGI-GDHFSAGLDLSELRERDATEGLVHSQTWHRVFD 100

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            ++   +P IA + GA +GGGLE+A A  +R+   +A   LPE    I  G         
Sbjct: 101 KIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVG--------- 151

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  GG+ RLPRL+G +   D++ TGR  S  + +  G   Y +  G A  KALE+ 
Sbjct: 152 ------GGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELG 205

Query: 181 QEINQK 186
             + Q 
Sbjct: 206 NRVAQN 211

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  196 bits (502), Expect = 8e-64
 Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 16/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
            +  L  A   ++      +++   S  KVF AG D+ E        +  Y + LR    
Sbjct: 32  FIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPL-SYDDPLRQITR 90

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            ++  P P I++++G+  GG  EM ++ DL I    +   +    L +            
Sbjct: 91  MIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYN--------- 141

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                   G   L R  G  + K++IFT   ++ + A+++G++N+ V   + +   L++A
Sbjct: 142 ------LVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMA 195

Query: 181 QEINQK 186
             I++K
Sbjct: 196 HHISEK 201

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  194 bits (495), Expect = 2e-62
 Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-----IHFYVNTL 55
           M+R L+    T+++DSS  V++  S+ P+ F A  D++   +M   +         VN  
Sbjct: 36  MMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVF 95

Query: 56  RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC-GEAALLGLPETGLAIIPGCSD 114
           ++    +   P  TI  + G A GGG E   A D+     E A LG  E  + IIPG   
Sbjct: 96  QAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPG--- 152

Query: 115 RSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 174
                        GGTQ L   VG++ A +++ T      + A S G +N  +PA +   
Sbjct: 153 ------------GGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADELDE 200

Query: 175 KALEIAQEI 183
               +A+ I
Sbjct: 201 YVDRVARNI 209

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  193 bits (492), Expect = 2e-62
 Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 18/186 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M+  +  A E    +    V+++     + F AGAD++E  +  P  +        + + 
Sbjct: 33  MVAEIVAAVEAFDRNEKVRVIVLTGR-GRAFAAGADIQEMAKDDPIRL--EWLNQFADWD 89

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L  +  P IA ++G ALGGG E+AL+CDL +   AA  G PE  L ++PG         
Sbjct: 90  RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPG--------- 140

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL +L+G   A + ++TG ++S K+A  LG+VN  V       + + +A
Sbjct: 141 ------AGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLA 194

Query: 181 QEINQK 186
             + ++
Sbjct: 195 GRLAEQ 200

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  194 bits (495), Expect = 2e-62
 Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 19/190 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---HFYVNTLRS 57
           ++R L    E ++  ++  VV+  S+    F    D+ +  + +            +L  
Sbjct: 35  VVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGM 94

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGCSDRS 116
            F  L  LP  TIA + G A G G E  LACD+R    E A+LG PE G+   PG     
Sbjct: 95  LFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPG----- 149

Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 176
                     AG  Q L RL+G+  A + + T        A   G VN  VP  +     
Sbjct: 150 ----------AGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFV 199

Query: 177 LEIAQEINQK 186
             IA  ++  
Sbjct: 200 AGIAARMSGF 209

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  193 bits (492), Expect = 2e-62
 Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 17/187 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF-YVNTLRSTF 59
           ++  +    + + +D +  VV+I     + F AGAD+KE   ++ ++         + TF
Sbjct: 33  VMHDVTELIDQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQVTF 91

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             +E    P IA I GAALGGGLE A++C +R   E+A LGLPE  L +IPG        
Sbjct: 92  ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPG-------- 143

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                    GTQRLPR VGK+ A +++ T   ++G +A+  GLVN            L++
Sbjct: 144 -------FAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKV 196

Query: 180 AQEINQK 186
           A++I  K
Sbjct: 197 AKQIAGK 203

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  190 bits (485), Expect = 2e-61
 Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  L  A ET  ED +   +++     K F AGAD+KE +  +  +   Y     S + 
Sbjct: 35  LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQDC--YSGKFLSHWD 91

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  +  P IA ++G ALGGG E+A+ CD+   GE A  G PE  L  IPG         
Sbjct: 92  HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG--------- 142

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGGTQRL R VGKS+A +++ TG ++S +DA   GLV+   P      +A++ A
Sbjct: 143 ------AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA 196

Query: 181 QEINQK 186
           ++I   
Sbjct: 197 EKIANN 202

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  190 bits (485), Expect = 4e-61
 Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 18/186 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  +  A   + +D     ++I  S  K F AGAD+KE   ++ ++   +     +T+ 
Sbjct: 53  VMNEVTSAATELDDDPDIGAIIITGS-AKAFAAGADIKEMADLTFADA--FTADFFATWG 109

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L A+  PTIA + G ALGGG E+A+ CD+ I  + A  G PE  L ++PG         
Sbjct: 110 KLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPG--------- 160

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  GG+QRL R +GK+ A D+I TGR +   +A   GLV+  VPA     +A   A
Sbjct: 161 ------MGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATA 214

Query: 181 QEINQK 186
             I+Q 
Sbjct: 215 TTISQM 220

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  189 bits (482), Expect = 9e-61
 Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 18/186 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +   +  A      D     +++  S  + F AGAD+ E   ++P +       L S + 
Sbjct: 38  LEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQA--RERNLLSGWD 94

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L  +  P +A + G ALGGG E+A+ CDL I  + A  G PE  L I+PG         
Sbjct: 95  SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPG--------- 145

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  GGTQRL R VGK+ A D+  TGR ++ ++A  +GLV+  VPA     +AL +A
Sbjct: 146 ------LGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVA 199

Query: 181 QEINQK 186
           Q I + 
Sbjct: 200 QRIARM 205

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  185 bits (472), Expect = 2e-59
 Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 17/187 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-HFYVNTLRSTF 59
           M+     A++ I  D      ++  +    +C G DL +   +           T+    
Sbjct: 37  MVSQFAAAWDEIDHDDGIRAAILTGA-GSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGL 95

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
                L  P IA ++GA LGGG EM    D+R+  E A  GLPE    ++PG        
Sbjct: 96  LLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPG-------- 147

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                  AG   RL R +  + A ++I TG  ++  +A   GLV + VPAG A  KA  +
Sbjct: 148 -------AGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSL 200

Query: 180 AQEINQK 186
           A  I + 
Sbjct: 201 ADRIVRN 207

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  185 bits (472), Expect = 8e-59
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 26/201 (12%)

Query: 1   MLRGLKHAFETISEDSSAN----VVMIRSSVPKVFCAGADLKERRQMSPSEIHFY----- 51
           ++  +      + +  +        ++ +S   VF  G DL    Q+             
Sbjct: 64  LVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYA 123

Query: 52  --VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 109
                    F         +IA++ G ALGGG E AL+C   I  E  ++GLPE    + 
Sbjct: 124 QRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLF 183

Query: 110 PGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 169
           PG                G    + + +   +A+ I+  G   S +  + +GLV+  VP 
Sbjct: 184 PG---------------MGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPR 228

Query: 170 GQAQLKALEIAQEINQKVQSV 190
           GQ      ++ +E  +   + 
Sbjct: 229 GQGVAAVEQVIRESKRTPHAW 249

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  183 bits (467), Expect = 9e-59
 Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 17/187 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTF 59
           +   +K A    + D S   V++     + F AG D  E +Q+S SE I  +++ +   +
Sbjct: 28  LETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLY 87

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             +  +  PTIA +DG A+G G + AL  D R+    A   +PE    I           
Sbjct: 88  QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCS-------- 139

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                   G    L    G S  ++II+  + +     +   LVN  V +      A+  
Sbjct: 140 -------VGAAI-LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQ 191

Query: 180 AQEINQK 186
           A  +   
Sbjct: 192 AHVMASY 198

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  181 bits (463), Expect = 5e-58
 Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 25/186 (13%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +      A      D   +VV++  +   VFCAG DLKE    +                
Sbjct: 37  LRSTFFRALSDAQNDDDVDVVIVTGA-DPVFCAGLDLKELGDTTELP---------DISP 86

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
               +  P I  I+GAA+ GGLE+AL CD+ I  E A        + ++P          
Sbjct: 87  KWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPT--------- 137

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  G + RLP+ VG  +A+ +  TG  +S +DA+  GLV   V        A  +A
Sbjct: 138 ------WGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVA 191

Query: 181 QEINQK 186
             I   
Sbjct: 192 ASIVGN 197

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  181 bits (462), Expect = 7e-58
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 20/186 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  L    +         +++   +  + F AG D  +    S  ++   +  +     
Sbjct: 35  LVEALIDGVDAA-HREQVPLLVFAGA-GRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQ 92

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +   P  T+A+  G   G G+++  AC  R C   A   +P     ++           
Sbjct: 93  RVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---------- 142

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                   GT+R   +VG   A  I+ + R     +A  +G V       Q        A
Sbjct: 143 --------GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAA 194

Query: 181 QEINQK 186
           +     
Sbjct: 195 EAATAL 200

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  180 bits (460), Expect = 1e-57
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 20/189 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS---EIHFYVNTLRS 57
           M   L  A + +  D     V++     K F AGADL    +++     E + +  +L  
Sbjct: 27  MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMR 85

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            F  +   P PT+A ++G A+ GG  +ALACDL +  E A LG  E  +  +        
Sbjct: 86  LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA------ 139

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                       +  L R VG+  AKD++ TGR V  ++A +LGLVN   P G+A  +A 
Sbjct: 140 ----------LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAK 189

Query: 178 EIAQEINQK 186
            +A+E+ + 
Sbjct: 190 ALAEEVAKN 198

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  181 bits (461), Expect = 2e-57
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 21/191 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-----EIHFYVNTL 55
           + R +    ET+ +D +A V+++  +  + + AG DLKE  +   +     +        
Sbjct: 37  LNREMIDVLETLEQDPAAGVLVLTGA-GEAWTAGMDLKEYFREVDAGPEILQEKIRREAS 95

Query: 56  RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDR 115
           +  +  L     PTIA+++G   GGG    +ACDL IC + A  GL E    I PG    
Sbjct: 96  QWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPG---- 151

Query: 116 SLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 175
                         ++ +   VG   +   I TG+   G+ A  +GLVN  VP  Q +  
Sbjct: 152 -----------NLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREV 200

Query: 176 ALEIAQEINQK 186
            +E+A+ + +K
Sbjct: 201 TIELARNLLEK 211

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  178 bits (455), Expect = 4e-57
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M + L  A +    D+    ++I  +  +VF  G DLK             +        
Sbjct: 32  MQQALNEAIDAADRDNVG-ALVIAGN-HRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSY 89

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L + P P +    G A+  G  +  + D R+   A  +   E  + +            
Sbjct: 90  RLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIP--------- 140

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                     + L   +  S  +      +   G+ A++ G ++          +A E A
Sbjct: 141 ------YAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAA 194

Query: 181 QEI 183
           +E 
Sbjct: 195 REF 197

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  178 bits (454), Expect = 7e-57
 Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 21/183 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++ GL+H F  ++++    VV++       F +GA  +   + +  E+            
Sbjct: 31  IVEGLRHCFSVVAQNQQYKVVILTGY-GNYFSSGASKEFLIRKTRGEVEV-----LDLSG 84

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +    IP IA + G + GGGL + L  D  +  + ++           P          
Sbjct: 85  LILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPV--------- 135

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                    +  L   +G  +A+++I+TG    GK+    G+    V        A ++ 
Sbjct: 136 ------GATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLG 189

Query: 181 QEI 183
           Q+I
Sbjct: 190 QKI 192

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  177 bits (452), Expect = 3e-56
 Identities = 58/186 (31%), Positives = 78/186 (41%), Gaps = 16/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +  G+  A E    D     V++  +  K FCAGADLK   +      H           
Sbjct: 37  VSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLY-HPDHPEWGFAGY 95

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
               +  PTIA ++G ALGGG E+ALA DL +  E A  GLPE    +I           
Sbjct: 96  VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAA--------- 146

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGG  R+   + + VA  ++ TG  +S   A   GL+N  V AG     AL +A
Sbjct: 147 ------AGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALA 200

Query: 181 QEINQK 186
             I   
Sbjct: 201 SAITVN 206

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  177 bits (451), Expect = 3e-56
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 17/187 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML  L  A         +   ++ +   + F AG DL E      +    Y +     + 
Sbjct: 40  MLADLALAMGEYERSEESRCAVLFAH-GEHFTAGLDLMELAPKLAASGFRYPDGGVDPWG 98

Query: 61  FLEA-LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
            ++     P +  + G     G+E+ L  D+ +          E    I P         
Sbjct: 99  VVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPL-------- 150

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                   G T R PR  G + A   I TG +    +A+ + L+   V  G+   +ALE 
Sbjct: 151 -------GGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEY 203

Query: 180 AQEINQK 186
           A+ I + 
Sbjct: 204 AERIARA 210

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  177 bits (452), Expect = 3e-56
 Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 16/187 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-HFYVNTLRSTF 59
            +  +  AF    +D + +V+++       FC+G D K+R               +    
Sbjct: 41  TVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQ 100

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             +  +P P IA++ G A+GGG  + + CDL I  + A+ G     +             
Sbjct: 101 RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDA-------- 152

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                    G+  L R+VG   A++I +  R+ + ++A+ +GLVN  VP  + + + ++ 
Sbjct: 153 -------GYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQW 205

Query: 180 AQEINQK 186
            +EI + 
Sbjct: 206 CKEIMKH 212

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  175 bits (446), Expect = 7e-56
 Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 20/184 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++     A +   +D +   ++I +  P +   G DLK     + + I+  V    +   
Sbjct: 33  VIIAFNAALDQAEKDRA---IVIVTGQPGILSGGYDLKVMTSSAEAAINL-VAQGSTLAR 88

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGCSDRSLSH 119
            + + P P I    G A+  G  + L+ D RI       +GL E  + +           
Sbjct: 89  RMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMH-------- 140

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                    G +     + KS     +        + AM+ G ++  V   + Q  AL +
Sbjct: 141 -------HAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAV 193

Query: 180 AQEI 183
           A ++
Sbjct: 194 AAQL 197

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  176 bits (449), Expect = 9e-56
 Identities = 45/187 (24%), Positives = 64/187 (34%), Gaps = 17/187 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML  L  A      D+     ++      +F AG DL                   + + 
Sbjct: 37  MLEELALALGEYETDTDLRAAVLYGE-GPLFTAGLDLASVAAEIQGGASLTPEGGINPWQ 95

Query: 61  F-LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
                L  P +  + G  L  G+E+ALA D+ I  E A     E    I P         
Sbjct: 96  VDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPF-------- 147

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                   G T R PR  G   A   + T       +A  +G+V   VP G+    A+ I
Sbjct: 148 -------GGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAI 200

Query: 180 AQEINQK 186
           AQ I ++
Sbjct: 201 AQTIARQ 207

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  176 bits (449), Expect = 1e-55
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 17/188 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTL--RST 58
            ++ +  A      D +  V+++  +  K FC+G D K R      +    V+ L     
Sbjct: 56  TVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDF 115

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
              +   P P +A++ G ++GGG  + + CDL I  + A+ G     +    G       
Sbjct: 116 QRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDG------- 168

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                     G   + R+VG+  A++I F  R+   K A+ +GLVN  VP    + + + 
Sbjct: 169 --------GWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVR 220

Query: 179 IAQEINQK 186
             +E+ Q 
Sbjct: 221 WCREMLQN 228

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  175 bits (447), Expect = 2e-55
 Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 22/181 (12%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  L  A      D SA  +++       FCAGADL      +      Y + L     
Sbjct: 49  LVEELTQAIRKA-GDGSARAIVLTGQ-GTAFCAGADLSGDAFAAD-----YPDRLIELHK 101

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            ++A P+P +  I+G A+G GL++A+ CDLR+    A    P +   +            
Sbjct: 102 AMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALD--------- 152

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                     +RL  LVG   A+ ++ +  K++ + A+  G+ N       AQ  A EIA
Sbjct: 153 ------NWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIA 206

Query: 181 Q 181
           +
Sbjct: 207 R 207

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  175 bits (445), Expect = 4e-55
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 29/199 (14%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-----------IH 49
             R L   F+ IS+DS    V++  +  K+F +G DL +                   + 
Sbjct: 32  FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLR 90

Query: 50  FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 109
             ++  + TF+ +E  P P IA I G  +GGG+++  ACD+R C + A   + E  + + 
Sbjct: 91  DLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLA 150

Query: 110 PGCSDRSLSHVILASDRAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
                             G  QRLP+++G +S+  ++ FT RK+   +A+  GLV+   P
Sbjct: 151 AD---------------VGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFP 195

Query: 169 AGQAQL-KALEIAQEINQK 186
                L  A  +A +I+ K
Sbjct: 196 DKDVMLNAAFALAADISSK 214

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  175 bits (445), Expect = 5e-55
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 19/189 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---HFYVNTLRS 57
           M++ +  A++ +  D      ++  +    FCAG DLK   +  P +      Y  +   
Sbjct: 48  MMQIMVEAWDRVDNDPDIRCCILTGA-GGYFCAGMDLKAATKKPPGDSFKDGSYDPSRID 106

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
                  L  P IA ++G A+ GG E+    D+R+  E+A  G+ E   ++ P       
Sbjct: 107 ALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPM------ 160

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                     G   RL R +  +VA D++ TGR ++  +A  +GLV + VP GQA  KAL
Sbjct: 161 ---------GGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKAL 211

Query: 178 EIAQEINQK 186
           EIA+ I   
Sbjct: 212 EIAEIIAAN 220

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  172 bits (438), Expect = 3e-54
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 20/188 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS--- 57
           +   L  A    + ++S + ++++S     F +G  L++    +  +    +  +     
Sbjct: 32  LGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLN 91

Query: 58  -TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS 116
                +   P  T+A+I+G A GGG  M LACD RI    A        + I P      
Sbjct: 92  HCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPD----- 146

Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA-QLK 175
                      G +  LPR++G     +++  G+  + ++A+ LGL+       Q  Q +
Sbjct: 147 ----------LGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQER 196

Query: 176 ALEIAQEI 183
                + +
Sbjct: 197 VKNYLKAV 204

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  172 bits (438), Expect = 5e-54
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 26/195 (13%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-------HFYVN 53
           M+  L+ A+     D    ++++  +  + FC+GAD+KE  +             +    
Sbjct: 39  MITELRAAYHEAENDDRVWLLVVTGT-GRAFCSGADVKEIPEDGKVIYERPYLSTYDQWE 97

Query: 54  TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCS 113
             +        +  P +  ++G   G G++     D+ I  E A    P   + ++ G  
Sbjct: 98  APQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAG-- 155

Query: 114 DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRK--VSGKDAMSLGLVNYYVPAGQ 171
                             R+ R++ +S+A  +   G+   +S + A  LGL++  V   +
Sbjct: 156 --------------RELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDR 201

Query: 172 AQLKALEIAQEINQK 186
              +A EIA  +N  
Sbjct: 202 LLERAHEIADIVNSN 216

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  171 bits (437), Expect = 6e-54
 Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRST 58
           M R L   +  I  D    VV++R    K F +G   +   +           +   R  
Sbjct: 41  MHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYEGRIRIMREARDL 99

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
              L  L  P ++ I G A+G GL +AL  D+ +    A +    T L +  G       
Sbjct: 100 VLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAG------- 152

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                          P LVG + AK  + T   +SG++A  +GLV+  V   +    A  
Sbjct: 153 --------DHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATR 204

Query: 179 IAQEI 183
           +A+ +
Sbjct: 205 LAENL 209

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  172 bits (438), Expect = 8e-54
 Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 22/190 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------PSEIHFYVN 53
           ++   K     IS D+    V+I  +  K FC+GAD K    +        P+     + 
Sbjct: 52  VMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIALRSME 110

Query: 54  TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCS 113
            L      L  +  P IA I+GAA+GGGL +ALACD+R+  + A          +     
Sbjct: 111 LLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTAS-- 168

Query: 114 DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 173
                         G +  LPR +G S A DI+ TGR V   +A  +GLV+  V +    
Sbjct: 169 ------------ELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLL 216

Query: 174 LKALEIAQEI 183
            +   I + I
Sbjct: 217 EECYAIGERI 226

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  170 bits (434), Expect = 1e-53
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 19/188 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTF 59
             R    AF  IS D    VV++  S    + A  D      ++ P E        +   
Sbjct: 52  THREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVL 110

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGCSDRSLS 118
             L  + +P I+ ++GAAL    E  L  D+ +  E      +P     I+PG       
Sbjct: 111 QNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENTVFQDMPHLNAGIVPG------- 162

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                    G     P  +G    +  +FT  K++ + A  L +V+  +P  +   +A E
Sbjct: 163 --------DGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWE 214

Query: 179 IAQEINQK 186
           IA+ + ++
Sbjct: 215 IARTLAKQ 222

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  169 bits (431), Expect = 3e-53
 Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 18/187 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
               L + F  I+ D    VV++  +    FC   D       +P +    +   +   +
Sbjct: 44  AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLN 102

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLG-LPETGLAIIPGCSDRSLSH 119
            L ++ +P IA ++G       E+ +  D+ +  E+A     P     I+PG        
Sbjct: 103 NLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPG-------- 153

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                   G     P ++G +  +  + TG+++  + A+  G VN  +   +   +A E+
Sbjct: 154 -------DGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWEL 206

Query: 180 AQEINQK 186
           A+ I +K
Sbjct: 207 ARGIAEK 213

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  169 bits (430), Expect = 5e-53
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 21/186 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           + R L  A + +  D+  +V ++  +    FCAG DLK   +     +       R    
Sbjct: 43  VSRALADAMDRLDADAGLSVGILTGA-GGSFCAGMDLKAFARGENVVVE-----GRGLGF 96

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
                  P IA ++G AL GG E+ALA DL +    +  G+PE    ++ G         
Sbjct: 97  TERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAG--------- 147

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  GG  RLP  +  ++A ++  TG  +S + A +LG+VN     G A   A+ +A
Sbjct: 148 ------GGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALA 201

Query: 181 QEINQK 186
           ++I   
Sbjct: 202 EKITAN 207

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  168 bits (429), Expect = 8e-53
 Identities = 65/183 (35%), Positives = 86/183 (46%), Gaps = 18/183 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
               L  AF     D  A+V ++       FCAGADLK       +E+  + +       
Sbjct: 39  TAAALLAAFTEFDADPEASVAVLWGD-NGTFCAGADLKAMGTDRGNEL--HPHGPGPMGP 95

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
               L  P IA I G A+ GG+E+AL CDLR+  E A+LG+      +            
Sbjct: 96  SRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLI--------- 146

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  GGT RLPRL+G S A D+I TGR V   +A+ +GLVN  V  GQA+  A  +A
Sbjct: 147 ------DGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLA 200

Query: 181 QEI 183
            EI
Sbjct: 201 AEI 203

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  168 bits (428), Expect = 1e-52
 Identities = 45/185 (24%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF--YVNTLRST 58
           + RGL   +  +        V++R     VF AG       +M  S           R  
Sbjct: 38  LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRVFWEARDL 96

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
                  P P +A ++  A+G GL +ALA D+ + G+   L      L +  G       
Sbjct: 97  VLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAG------- 149

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                          P LVG + AK  +     ++G++A  LGLV   V   +   KALE
Sbjct: 150 --------DHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALE 201

Query: 179 IAQEI 183
           +A+ +
Sbjct: 202 VAERL 206

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  166 bits (423), Expect = 4e-52
 Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           + +GL  A + +   +  +V +I  +    FCAG DLK                 R    
Sbjct: 35  VSQGLAAAADQLDSSADLSVAIITGA-GGNFCAGMDLKAFVSGEAVLSE------RGLGF 87

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
                  P IA ++G AL GG E+ L+CDL + G +A  G+PE    ++ G         
Sbjct: 88  TNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAG--------- 138

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AGG  RLP  +   VA ++  TG   + +DA   G +N  V  GQA   ALE+A
Sbjct: 139 ------AGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELA 192

Query: 181 QEINQK 186
            +I   
Sbjct: 193 AKITAN 198

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  166 bits (424), Expect = 5e-52
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 20/189 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRS 57
           +L  ++   ++   D++  V++++++  K F AGADL   + M   +  E       L +
Sbjct: 32  LLTEMRIRLDSAINDTNVRVIVLKAN-GKHFSAGADLTWMQSMANFTEEENLEDSLVLGN 90

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
               +   P PTIA++ GAA GGG  +A ACD+ I   +A     E  L +IP       
Sbjct: 91  LMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIP------- 143

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                    A  +  + R +G+  AK +  +        A SL LV + VP        L
Sbjct: 144 ---------AVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTL 194

Query: 178 EIAQEINQK 186
           + A +I+  
Sbjct: 195 KYASQISNN 203

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  166 bits (422), Expect = 1e-51
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 21/200 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVP-----KVFCAGADLKERRQMSPSEI-HFYVNT 54
            +  L  AF    ED+   VV++  + P       FC+G D   R +    +        
Sbjct: 38  TVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLN 97

Query: 55  LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSD 114
           +      + ++P   IA++ G A+GGG  + L CDL I  + A+ G     +    G   
Sbjct: 98  VLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDG--- 154

Query: 115 RSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 174
                         G+  L R+VG+  A++I +  R+ S ++A  +G+VN  VP  + + 
Sbjct: 155 ------------GFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEE 202

Query: 175 KALEIAQEINQKVQSVFRIL 194
           + ++ A+EI  K     R L
Sbjct: 203 EGIQWAKEILSKSPLAIRCL 222

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  165 bits (421), Expect = 1e-51
 Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 21/187 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ----MSPSEIHFYVNTLR 56
           ++R ++ A  T + D S  +V++ +    VFC G D     +        E       +R
Sbjct: 34  VMREVQSALSTAAADDSK-LVLLSAV-GSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIR 91

Query: 57  STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS 116
           +  +       P I  ++G A+G G  +   CD+    E A    P T     P      
Sbjct: 92  NFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPD----- 146

Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 176
                        T   P+++G + A +++ +GRK++ ++A   GLV+     G    + 
Sbjct: 147 ----------GCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV 196

Query: 177 LEIAQEI 183
           +   +E+
Sbjct: 197 MVRIKEL 203

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  170 bits (432), Expect = 2e-51
 Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 40/210 (19%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVP--------KVFCAGADLKERRQMSPSEIHFYV 52
            +  ++ A +    D    V ++R  V         +VF AG +LK   Q   S + F +
Sbjct: 195 QVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLM 254

Query: 53  ----------------NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA 96
                           N  R  +     +  P +A +DG A+GGG ++ L  D  +    
Sbjct: 255 RRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSD 314

Query: 97  ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 156
           A   LP     IIPG                    RL R  G  V++ +I  GR++  K+
Sbjct: 315 AYFSLPAAKEGIIPG----------------AANLRLGRFAGPRVSRQVILEGRRIWAKE 358

Query: 157 AMSLGLVNYYVPAGQAQLKALEIAQEINQK 186
             +  LV+  V   +           ++  
Sbjct: 359 PEARLLVDEVVEPDELDAAIERSLTRLDGD 388

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  165 bits (419), Expect = 3e-51
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 20/185 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF--YVNTLRST 58
           +  GL   ++ +++D +A   +I  +  + F AG D    +++S         +   R  
Sbjct: 56  LHVGLARLWQRLTDDPTARAAVITGA-GRAFSAGGDFGYLKELSADADLRAKTIRDGREI 114

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
              +    IP +A ++G A+G G  +    D+    E A L  P   + ++         
Sbjct: 115 VLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAA------- 167

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                    GG    P  +   +AK+   TG ++S + A+ LGL N+         +A+ 
Sbjct: 168 --------DGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVAD--DPVAEAIA 217

Query: 179 IAQEI 183
            A++I
Sbjct: 218 CAKKI 222

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  163 bits (416), Expect = 5e-51
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 17/183 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M   +  A +    D +   V+I  +  + FCAG DL    +          +       
Sbjct: 31  MNAEVTKALKQAGADPNVRCVVITGA-GRAFCAGEDLSGVTEEMDHG-DVLRSRYAPMMK 88

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L  L  P +A ++GAA G G+ +ALACD R+  E A        + ++P          
Sbjct: 89  ALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPD--------- 139

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 AG    LPRLVG++ A ++   G KV+ ++A +LGL    +P    + +  + A
Sbjct: 140 ------AGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFA 193

Query: 181 QEI 183
           + +
Sbjct: 194 ERL 196

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  163 bits (416), Expect = 8e-51
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 20/188 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRST 58
           +   +  A +   ++    VV++R +    F AG D+K+       P+            
Sbjct: 33  LYLWIAKALDEADQNKDVRVVVLRGA-EHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVL 91

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
                 L  P I  + G A+G G+ + L  DL      AL  +P   L + P        
Sbjct: 92  LKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPE------- 144

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                    G +Q L +  G   A +++FT +K + + A+  GLVN  V    A   A  
Sbjct: 145 --------GGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVEDAYAT--AQA 194

Query: 179 IAQEINQK 186
            AQ +   
Sbjct: 195 TAQHLTAL 202

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  163 bits (414), Expect = 1e-50
 Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 17/187 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTF 59
           +      A    ++D    VV++  S  + F AG DL E +               R   
Sbjct: 34  LYDATAQALLDAADDPQVAVVLLTGS-GRGFSAGTDLAEMQARITDPNFSEGKFGFRGLI 92

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             L   P P I  ++G  +G G  +    DL      A L  P T L + P         
Sbjct: 93  KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPE-------- 144

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                  A  +  LP+LVG+  A  ++ +   +  ++A+ +GLV       +   +A   
Sbjct: 145 -------AASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRH 197

Query: 180 AQEINQK 186
           A+ +  K
Sbjct: 198 AEILAAK 204

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  163 bits (414), Expect = 2e-50
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           + R L  A++ + +D +  V+++  + P  FC+GA +    +   +       +      
Sbjct: 35  LGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAAAETFAAP-RNPDFSASPVQP 92

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
               L  P IA ++G A+G G+ +AL  D+RI  E     +P+    + P          
Sbjct: 93  AAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPD--------- 143

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 A     LPRLVG +VA +++ TG   S + A+  GL N  +PAG+    AL +A
Sbjct: 144 ------ALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMA 197

Query: 181 QEI 183
            +I
Sbjct: 198 HDI 200

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  163 bits (414), Expect = 3e-50
 Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 21/187 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER----RQMSPSEIHFYVNTLR 56
           +++ + +A  + + D S  +V+  ++   VFC G D        R    +     V+T++
Sbjct: 52  VIKEIVNALNSAAADDSK-LVLFSAA-GSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIK 109

Query: 57  STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS 116
           +  +       P +  ++G A+G G  +   CDL    E A    P T     P      
Sbjct: 110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD----- 164

Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 176
                        +   P+++GK+ A +++  GRK++ ++A + GLV+     G    + 
Sbjct: 165 ----------GCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 214

Query: 177 LEIAQEI 183
           +   +E+
Sbjct: 215 MIQIKEL 221

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  162 bits (412), Expect = 3e-50
 Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 21/188 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-----IHFYVNTL 55
            ++ +  A     ED S   VMI  +    FCAG  L+E                     
Sbjct: 31  AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWW 89

Query: 56  RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDR 115
                 +  +  P +A I+G A GGGL ++LA D+ IC ++A        + I       
Sbjct: 90  HQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGND---- 145

Query: 116 SLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 175
                         +  L R+VG   A +++ T R +  ++A   GLV+   P  + +  
Sbjct: 146 -----------TATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREV 194

Query: 176 ALEIAQEI 183
           A ++A+E+
Sbjct: 195 AWKVAREL 202

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  165 bits (420), Expect = 7e-49
 Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 25/193 (12%)

Query: 1   MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF 59
           +   L  A + I  E      V++ S   +VFC+GA++      + +    +      T 
Sbjct: 59  VDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETR 118

Query: 60  SFLE----ALPIPTIAVIDGAALGGGLEMALACDLRIC--GEAALLGLPETG-LAIIPGC 112
           + LE       +  +A ++GA  GGG E+ALACD        ++ + LPE   L ++PG 
Sbjct: 119 NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGT 178

Query: 113 SDRSLSHVILASDRAGGTQRL--PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 170
                          GG  R+   R V    A         V G+ A +  LV+  V   
Sbjct: 179 ---------------GGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPN 223

Query: 171 QAQLKALEIAQEI 183
           Q        A E+
Sbjct: 224 QFDQAIQARALEL 236

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 28/181 (15%)

Query: 1   MLRGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF 59
             R    A  ++  +  +    + R+         AD    +      +   +  LR T 
Sbjct: 309 FAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTL 368

Query: 60  SFLEALPIPTIAVID-GAALGGGL-EMALACDLRIC-------GEAALLGLPETGLAIIP 110
           + ++       A+I+ G+   G   E+A A D            E   + L E    + P
Sbjct: 369 ARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYP 428

Query: 111 GCSDRSLSHVILASDRAGGTQRLP-RLVGKSVAKDIIF--TGRKVSGKDAMSLGLVNYYV 167
                                RL  R   ++   D +    G+ +   +A  LGLV    
Sbjct: 429 MV---------------THQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASP 473

Query: 168 P 168
            
Sbjct: 474 D 474

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  158 bits (401), Expect = 2e-48
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 23/191 (12%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +L  L  A+   +ED+  +V+++R++  K F AG DL+    +       ++    S   
Sbjct: 48  LLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRY 106

Query: 61  F-----LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDR 115
                    +P P+IA + G  + GGL +   CDL I  E AL   P   + I       
Sbjct: 107 LEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIG------ 160

Query: 116 SLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 175
                                +G   AK+I+FTGR ++ ++    G+VN  VP  +   +
Sbjct: 161 -----------GVEYHGHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAE 209

Query: 176 ALEIAQEINQK 186
              +A EI + 
Sbjct: 210 TRALAGEIAKM 220

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  157 bits (400), Expect = 3e-48
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 19/187 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR----QMSPSEIHFYVNTLR 56
               L+     +S   +   +++     + FC+G D+ E       M  + +  +     
Sbjct: 45  AYADLRDLLAELSRRRAVRALVLAGE-GRGFCSGGDVDEIIGATLSMDTARLLDFNRMTG 103

Query: 57  STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS 116
                +   P P IA + G A G G  +ALA D R+   +       T + +  G     
Sbjct: 104 QVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGG----- 158

Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 176
                      G    LPR+VG   A  ++  G  V   +A  +GL++     G+A   A
Sbjct: 159 ---------DMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAA 209

Query: 177 LEIAQEI 183
             +A+ +
Sbjct: 210 RTLARRL 216

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  156 bits (396), Expect = 6e-48
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 22/183 (12%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ML  L         D S   V++  +  + FC+G DL        ++             
Sbjct: 34  MLEELSVHIRDAEADESVRAVLLTGA-GRAFCSGGDLTGGDTAGAAD------AANRVVR 86

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            + +LP P IA + GAA+G G  +ALACDL +   A+   L  T + ++P          
Sbjct: 87  AITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPD--------- 137

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                  G +  LP L+G++    +  T  K+S   A   G++++   A + +    ++ 
Sbjct: 138 ------GGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVL 191

Query: 181 QEI 183
           + +
Sbjct: 192 RSV 194

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  165 bits (419), Expect = 8e-48
 Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 19/191 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE---RRQMSPSEIHFYVNTLRS 57
           +L  LK  +E     +    ++I  +    F  G D+      ++ +  E      ++  
Sbjct: 35  VLYNLKSNYEEALSRNDVKAIVITGA-KGRFSGGFDISGFGEMQKGNVKEPKAGYISIDI 93

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
               LEA   P++A IDG ALGGGLE+A+AC  RI   AA LGLPE  L +IPG      
Sbjct: 94  ITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPG------ 147

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                     GGTQRLPRLVG + A ++I T + V  ++  SLGL++  VP  +    A 
Sbjct: 148 ---------FGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTAR 198

Query: 178 EIAQEINQKVQ 188
             A +I  + +
Sbjct: 199 RWALDIVGRRK 209

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  156 bits (396), Expect = 1e-47
 Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 18/194 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRST-F 59
           ML+ L+      ++ +   V++I +    VF +G DLKE  +    + H  V    S   
Sbjct: 61  MLKSLQSDILHDADSNDLKVIIISAE-GPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVM 119

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             +   P+P IA+++G A   G ++  +CD+ +  + +    P   + +           
Sbjct: 120 MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCS-------- 171

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                    G   L R V + VA +++FTG  +S ++A+  GL++  VP  + Q + + I
Sbjct: 172 -------TPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRI 223

Query: 180 AQEINQKVQSVFRI 193
           A++I    + V  +
Sbjct: 224 ARKIASLSRPVVSL 237

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  153 bits (389), Expect = 7e-47
 Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE------IHFYVNT 54
           M+  L  A      D   +V++I     ++FCAG DLKE  +           +      
Sbjct: 34  MIAALHDALRRAMGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEA 92

Query: 55  LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSD 114
             +    L   P PTIA+++G A   GL++  ACDL     AA   LP            
Sbjct: 93  CSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCT--- 149

Query: 115 RSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 174
                             + R++G+    ++  TG       A++ GL+N  +P      
Sbjct: 150 -------------TPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAALAT 196

Query: 175 KALEIAQEINQKVQSVFRI 193
              ++A  +  + Q+  R 
Sbjct: 197 HVADLAGALAARNQAPLRR 215

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  154 bits (392), Expect = 7e-47
 Identities = 49/191 (25%), Positives = 73/191 (38%), Gaps = 24/191 (12%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--------PSEIHFYV 52
           +  G   A +    D    V+++     + FCAGA L      +          + +   
Sbjct: 58  LAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGYDKTMAKAKDANLAD 116

Query: 53  NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGC 112
                   F+  L  P IA I+G  +G GL  AL CD+R     A          +I   
Sbjct: 117 LVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAE- 175

Query: 113 SDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 172
                          G +  LPRL   +VA D++ +GR    ++A  LGLV   V   Q 
Sbjct: 176 --------------FGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQL 221

Query: 173 QLKALEIAQEI 183
             +ALE A++I
Sbjct: 222 MPRALEYAEDI 232

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  153 bits (387), Expect = 7e-46
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 33/204 (16%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKV------FCAGADLKERRQMSPSEIHFYVNT 54
            +  L    +         VV++  + P        FC+G D + R +            
Sbjct: 85  TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTAD 144

Query: 55  LRS-----------TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLP 102
                             +  +P   I +++G A GGG  + + CDL +   E A     
Sbjct: 145 TVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQT 204

Query: 103 ETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGL 162
           +  +    G                 G+  L R VG+  A++I F GR  + +    +G 
Sbjct: 205 DADVGSFDG---------------GYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGA 249

Query: 163 VNYYVPAGQAQLKALEIAQEINQK 186
           VN      + +   L+ A EIN K
Sbjct: 250 VNAVAEHAELETVGLQWAAEINAK 273

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  151 bits (383), Expect = 1e-45
 Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 18/194 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYV-NTLRSTF 59
           ML  L  AF T++ED S   V++ +S  K FCAG DLKE R     E +  +        
Sbjct: 54  MLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVM 112

Query: 60  SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSH 119
             ++ LP P IA + G A   G ++   CDL +    A   +    + +           
Sbjct: 113 LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCS-------- 164

Query: 120 VILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEI 179
                    G   L R VG+  A +++ TG  VS  DA  LGLVN  V       +   +
Sbjct: 165 -------TPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAM 216

Query: 180 AQEINQKVQSVFRI 193
             +I  K ++   +
Sbjct: 217 VSKIVAKPRAAVAM 230

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  150 bits (381), Expect = 2e-45
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 21/187 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M   +  A +  S+D S  ++ + +     + +G DL     + P  +            
Sbjct: 54  MYHEIMRALKAASKDDS--IITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLR 111

Query: 61  -FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRS 116
            F+      P P IAV++G A+G  + +    D     + A    P + L   P      
Sbjct: 112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPE----- 166

Query: 117 LSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 176
                        +   P+++  + A +++  G+K++  +A + GLV    P    Q + 
Sbjct: 167 ----------GCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV 216

Query: 177 LEIAQEI 183
               +  
Sbjct: 217 WTRLKAF 223

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  158 bits (401), Expect = 2e-45
 Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 19/186 (10%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE---RRQMSPSEIHFYVNTLRS 57
            L  L+ A + I  D+S   V++ S    VF  GAD+ E     ++  +E+         
Sbjct: 36  TLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIAGNLEANK 94

Query: 58  TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
            FS  E L +PT+A I+G ALGGGLEM LA D R+  ++A +GLPE  L I PG      
Sbjct: 95  IFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPG------ 148

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                     GGT RLPRL+G   A + I +G++   +DA+ +  V+  V A +    AL
Sbjct: 149 ---------FGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAAL 199

Query: 178 EIAQEI 183
           ++ +  
Sbjct: 200 DLIKRA 205

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  157 bits (399), Expect = 4e-45
 Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 23/186 (12%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++R +++  +    D +   ++I  +    FCAGAD+      +P         L S   
Sbjct: 48  VIREVRNGLQKAGSDHTVKAIVICGA-NGNFCAGADIHGFSAFTPGL------ALGSLVD 100

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            ++    P +A I G ALGGGLE+AL C  RI    A +GLPE  L I+PG         
Sbjct: 101 EIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPG--------- 151

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
                 A GTQ LPR+VG  VA D+I +G+ +S  +A+ LG+++  V +   + +A++ A
Sbjct: 152 ------ARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE-EAIKFA 204

Query: 181 QEINQK 186
           Q+I  K
Sbjct: 205 QKIIDK 210

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  148 bits (375), Expect = 1e-44
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 20/179 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS--EIHFYVNTLRST 58
           ++           E S+  VV++    P+VFC GAD +E  Q      +       L   
Sbjct: 35  LIEECLQVLNQC-ETSTVTVVVLEGL-PEVFCFGADFQEIYQEMKRGRKQASSQEPLYDL 92

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
           +  L+  P  TI+ + G    GGL    A D+ I  + A   L E    + P        
Sbjct: 93  WMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYP-------- 144

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                   A     L R +G+  A  +    + +S ++A   GL++ +       L+  
Sbjct: 145 --------ACVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLRKH 195

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  137 bits (348), Expect = 5e-40
 Identities = 39/213 (18%), Positives = 64/213 (30%), Gaps = 49/213 (23%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---------------- 44
               L    E    D   +V+++     + FCAG DL    + S                
Sbjct: 63  TPLELSALVERADLDPDVHVILVSGR-GEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSG 121

Query: 45  --------------PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL 90
                         P   +  ++     F+ L     PT+  I G  + GG ++AL  D 
Sbjct: 122 KTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQ 181

Query: 91  RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGR 150
            I    A +G P   +  +P                          +G   AK ++FTG 
Sbjct: 182 VIAAADAKIGYPPMRVWGVP------------------AAGLWAHRLGDQRAKRLLFTGD 223

Query: 151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 183
            ++G  A   GL            +   + + I
Sbjct: 224 CITGAQAAEWGLAVEAPDPADLDARTERLVERI 256

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  136 bits (344), Expect = 5e-40
 Identities = 32/203 (15%), Positives = 63/203 (31%), Gaps = 30/203 (14%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI--------HFYV 52
               L    E    +      +I+SS  + F +GAD K   +    +          +  
Sbjct: 37  DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVS 95

Query: 53  NTLRSTFSFLEAL---PIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAI 108
           N +       +A        I  ++G A+G    +   CD+     +   L  P   L +
Sbjct: 96  NFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGL 155

Query: 109 IPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 168
           I                  G T  LP   G +   + +   +          G ++    
Sbjct: 156 ITE---------------GGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFN 200

Query: 169 AGQAQLKAL--EIAQEINQKVQS 189
              +  +A   ++ +E+ +KV+ 
Sbjct: 201 MPSSNAEAFNAKVLEELREKVKG 223

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  133 bits (336), Expect = 7e-39
 Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 24/191 (12%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE-RRQMSPSEIHFYVNTLRSTF 59
           ++  L       S D +  VV++  +    FCAGADL E     SPS  +          
Sbjct: 39  LVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGGSPSSAYDMAVERAREM 97

Query: 60  SFL----EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDR 115
           + L        +P IA IDG    GG  +  ACD+ + G  +   L E  + + P     
Sbjct: 98  AALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPA---- 153

Query: 116 SLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 175
                            LP+L  +  A     TG K   + A  +GL+   + A      
Sbjct: 154 -----------IISLTLLPKLSAR-AAARYYLTGEKFDARRAEEIGLIT--MAAEDLDAA 199

Query: 176 ALEIAQEINQK 186
             ++  ++ + 
Sbjct: 200 IDQLVTDVGRG 210

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 97.8 bits (244), Expect = 1e-24
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 21/181 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M+R +    +   +D    +++I+ +  K FCAG D++   +   ++        R  + 
Sbjct: 34  MIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM 93

Query: 61  F---LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
               + +   P +A+I G  +GGG+ +++    R+  E  L  +PET + + P   D   
Sbjct: 94  LNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFP---D--- 147

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                     GG   LPRL GK +   +  TG ++ G+D    G+  ++V +   +L  L
Sbjct: 148 ---------VGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDS--EKLAML 195

Query: 178 E 178
           E
Sbjct: 196 E 196

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 95.6 bits (238), Expect = 1e-23
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 25/185 (13%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           M+R +        +D     V++  S  K FCAG D++     S +         +  F 
Sbjct: 70  MVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFE 129

Query: 61  -------FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCS 113
                   L     P +   DG  +GGGL +      ++  E + + +PE  + + P   
Sbjct: 130 EEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYP--- 186

Query: 114 DRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 173
           D             GG+  L R+ GK +   +  T   ++  DA  +GL ++Y+      
Sbjct: 187 D------------VGGSYFLNRMPGK-MGLFLGLTAYHMNAADACYVGLADHYLNR--DD 231

Query: 174 LKALE 178
            + + 
Sbjct: 232 KELMF 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.89
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.88
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.83
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.73
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.61
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.56
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.56
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.46
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	99.23
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	99.22
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	99.21
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	99.11
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	99.09
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	99.08
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.05
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.79
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	98.32
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.86
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.85
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.85
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.83
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.7
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.66
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.52
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.46
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.41
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.32
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.17
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	97.15
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.06
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.89
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	96.48
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.36
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.28
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.07
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.91
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	95.89
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	89.9
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	85.59
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	85.53
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	84.53
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	82.93
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	82.87
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	82.52
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	81.82

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-46  Score=305.05  Aligned_cols=178  Identities=27%  Similarity=0.452  Sum_probs=167.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||. |++||+|.|++++..... ....+.+.+++++.++.++||||||+|||+|+||
T Consensus        28 m~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  105 (254)
T 3hrx_A           28 LLDALYAALKEGEEDREVRALLLTGA-GRAFSAGQDLTEFGDRKP-DYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGA  105 (254)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGTTTSCC-CHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCC-CCCcccCccHHHhcccch-hhHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeh
Confidence            67899999999999999999999998 799999999999865432 3344566788899999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|++++++|++|..++++++++|++++++||+++
T Consensus       106 G~~lalacD~ria~~~a~f~~pe~~lGl~p~---------------~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~  170 (254)
T 3hrx_A          106 GMSLALWGDLRLAAVGASFTTAFVRIGLVPD---------------SGLSFLLPRLVGLAKAQELLLLSPRLSAEEALAL  170 (254)
T ss_dssp             HHHHHTTCSEEEEETTCEEECCGGGGTCCCC---------------TTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             hhhhhhccceeeEcCCCEEEchhhCcCcCCc---------------ccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       171 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  205 (254)
T 3hrx_A          171 GLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTK  205 (254)
T ss_dssp             TSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCeEEecCcHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            99999999999999999999999999999998876

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=3.2e-46  Score=304.83  Aligned_cols=180  Identities=47%  Similarity=0.791  Sum_probs=171.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||.|+++||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus        37 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  116 (265)
T 3kqf_A           37 LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGG  116 (265)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence            57899999999999999999999998559999999999987766666667778889999999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       117 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~  181 (265)
T 3kqf_A          117 GTELSLACDFRIAAESASLGLTETTLAIIPG---------------AGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEY  181 (265)
T ss_dssp             HHHHHHHSSEEEEETTCEEECCGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHhCCEEEEcCCcEEECcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       182 GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  216 (265)
T 3kqf_A          182 GLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAK  216 (265)
T ss_dssp             TSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCccEEeCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=6.8e-46  Score=304.14  Aligned_cols=179  Identities=24%  Similarity=0.395  Sum_probs=163.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+++|.++++++++|+++|+|||||. |++||+|.|++++....    .+....+.+.++.++.++.++||||||+|||+
T Consensus        43 m~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~  121 (274)
T 4fzw_C           43 MHAQLAECLKQVERDDTIRCLLLTGA-GRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGV  121 (274)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSC
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence            57899999999999999999999998 69999999999875322    23344555667888999999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++|
T Consensus       122 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~llltg~~i~A~e  186 (274)
T 4fzw_C          122 AAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPD---------------CGGTWLLPRVAGRARAMGLALLGNQLSAEQ  186 (274)
T ss_dssp             EETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCT---------------TTHHHHHHHHTCHHHHHHHHHHCCCEEHHH
T ss_pred             eeecCceeeeccceEEECCCCEEECcccCcccCCC---------------ccHHHHHHHHhhHHHHHHHHHhCCcCCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       187 A~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  225 (274)
T 4fzw_C          187 AHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIK  225 (274)
T ss_dssp             HHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999876

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=1.8e-45  Score=299.79  Aligned_cols=179  Identities=36%  Similarity=0.590  Sum_probs=166.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-hhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++++.++.|+++|+|||||. |++||+|.|++++...+. .....+....+.++.++.++||||||+|||+|+|
T Consensus        33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  111 (261)
T 3pea_A           33 VMHDVTELIDQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALG  111 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence            57899999999999999999999998 699999999999866543 3334455566778899999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~  176 (261)
T 3pea_A          112 GGLEFAMSCHMRFATESAKLGLPELTLGLIPG---------------FAGTQRLPRYVGKAKACEMMLTSTPITGAEALK  176 (261)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECCGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHH
T ss_pred             HHHHHHHhCCEEEEcCCCEEECcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       177 ~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  212 (261)
T 3pea_A          177 WGLVNGVFAEETFLDDTLKVAKQIAGKSPATARAVL  212 (261)
T ss_dssp             HTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCccEecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=9.2e-46  Score=300.98  Aligned_cols=177  Identities=36%  Similarity=0.566  Sum_probs=164.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.+++++++.|+++|+|||||. |++||+|.|++++......  ..+.+...+++.++.++||||||+|||+|+||
T Consensus        33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  109 (258)
T 4fzw_A           33 LLMQLVNELEAAATDTSISVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDTRPQLWARLQAFNKPLIAAVNGYALGA  109 (258)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEEECBCHHHHHTCCHH--HHHTCSHHHHHHHHHTCCSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEeCC-CCceeCCCchhhhccchhh--hHHHhHHHHHHHHHHHCCCCEEEEEcCcceee
Confidence            57899999999999999999999997 7999999999988654322  22334456788899999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       110 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~  174 (258)
T 4fzw_A          110 GCELALLCDVVVAGENARFGLPEITLGIMPG---------------AGGTQRLIRSVGKSLASKMVLSGESITAQQAQQA  174 (258)
T ss_dssp             HHHHHHHSSEEEEETTCEEECCGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             eeEeecccceEEECCCCEEECcccCCCcCCC---------------chHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       175 GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  209 (258)
T 4fzw_A          175 GLVSDVFPSDLTLEYALQLASKMARHSPLALQAAK  209 (258)
T ss_dssp             TSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=1.1e-45  Score=303.16  Aligned_cols=179  Identities=29%  Similarity=0.484  Sum_probs=170.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++|++++.|+++|+|||||. |++||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus        51 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  129 (277)
T 4di1_A           51 VYREIVAAADELGRRDDIGAVVLFGG-HEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGA  129 (277)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECC-SSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEECC-CCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehh
Confidence            57899999999999999999999998 79999999999998766666667777888999999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       130 G~~LalacD~ria~~~a~f~~pe~~lGl~p~---------------~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~  194 (277)
T 4di1_A          130 GLTLALAADWRVSGDNVKFGATEILAGLIPG---------------GGGMGRLTRVVGSSRAKELVFSGRFFDAEEALAL  194 (277)
T ss_dssp             HHHHHHHSSEEEEETTCEEECGGGGGTCCCC---------------TTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHhCCEEEEcCCCEEECcccccCCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       195 GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  229 (277)
T 4di1_A          195 GLIDDMVAPDDVYDSAVAWARRYLECPPRALAAAK  229 (277)
T ss_dssp             TSCSEEECGGGHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred             CCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=1.8e-45  Score=300.03  Aligned_cols=179  Identities=21%  Similarity=0.339  Sum_probs=168.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCce-EeccCcchhhc----CChhhHHHHHHHHHHHHHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVF-CAGADLKERRQ----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F-~~G~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      |+++|.++++++++|+++|+|||||. |+.| |+|.|++++..    .+......+...+++++.++.++||||||+|||
T Consensus        32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  110 (263)
T 3lke_A           32 LGTSLLEAIRAGNNETSIHSIILQSK-HRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALING  110 (263)
T ss_dssp             HHHHHHHHHHHHHHCSSCCEEEEEES-CTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEEEEEECS
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEcC-CCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            57899999999999999999999998 5777 99999999865    345555667778889999999999999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      +|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++|+
T Consensus       111 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~~~vG~~~A~~l~ltg~~~~a~  175 (263)
T 3lke_A          111 YAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPD---------------LGASYFLPRIIGYEQTMNLLLEGKLFTSE  175 (263)
T ss_dssp             EEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCC---------------TTHHHHHHHHHCHHHHHHHHHHCCCEEHH
T ss_pred             EeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCcCHH
Confidence            999999999999999999999999999999999999               99999999999999999999999999999


Q ss_pred             HHHhcCccceecC-CChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVP-AGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~-~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++||||+|+| ++++.+++.++|+++++.||.+++.+|
T Consensus       176 eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K  216 (263)
T 3lke_A          176 EALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATK  216 (263)
T ss_dssp             HHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999 899999999999999999999999876

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=2.5e-45  Score=298.71  Aligned_cols=180  Identities=28%  Similarity=0.349  Sum_probs=168.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||.+|++||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus        32 ~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  111 (260)
T 1sg4_A           32 FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAG  111 (260)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHH
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehH
Confidence            57899999999999999999999998678999999999886544444455666788889999999999999999999999


Q ss_pred             hHHHhhhCCEEEEe--CCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           81 GLEMALACDLRICG--EAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        81 G~~la~~~D~~va~--~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |++|+++||+||++  ++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       112 G~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~  176 (260)
T 1sg4_A          112 GCLVALTCDYRILADNPRYCIGLNETQLGIIAP---------------FWLKDTLENTIGHRAAERALQLGLLFPPAEAL  176 (260)
T ss_dssp             HHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCC---------------HHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHH
T ss_pred             HHHHHHhCCEEEEecCCCCEEeCchhhhCCCCc---------------hhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHH
Confidence            99999999999999  89999999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       177 ~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  213 (260)
T 1sg4_A          177 QVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTK  213 (260)
T ss_dssp             HHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999998876

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=2.9e-45  Score=293.99  Aligned_cols=178  Identities=17%  Similarity=0.154  Sum_probs=165.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++| ++|+|||||. |+.||+|.|++++...++.....+....++++.++.++||||||+|||+|+||
T Consensus        32 ~~~~L~~al~~~~~d-~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  109 (233)
T 3r6h_A           32 MQQALNEAIDAADRD-NVGALVIAGN-HRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAM  109 (233)
T ss_dssp             HHHHHHHHHHHHHHH-TCSEEEEECC-SSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHhC-CCeEEEEECC-CCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcchHH
Confidence            578999999999987 5899999998 69999999999987655555667778888999999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +++++++++++|..++++++++|++++++||+++
T Consensus       110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~~~---------------~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~  174 (233)
T 3r6h_A          110 GAFLLCSGDHRVAAHAYNVQANEVAIGMTIP---------------YAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAA  174 (233)
T ss_dssp             HHHHHTTSSEEEECTTCCEECCGGGGTCCCC---------------HHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHH
T ss_pred             HHHHHHhCCEEEEeCCcEEECchhhhCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHc
Confidence            9999999999999999999999999999988               8889999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       175 Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  209 (233)
T 3r6h_A          175 GFIDEISLPEVVLSRAEEAAREFAGLNQQAHNATK  209 (233)
T ss_dssp             TSCSEECCGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999886

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=5.9e-45  Score=297.70  Aligned_cols=178  Identities=27%  Similarity=0.400  Sum_probs=164.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|++++...   +......+...+.+++.++.++||||||+|||+|
T Consensus        32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  110 (268)
T 3i47_A           32 LLTEMRIRLDSAINDTNVRVIVLKAN-GKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAA  110 (268)
T ss_dssp             HHHHHHHHHHHHHHCTTCSEEEEEEC-SSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEECC-CCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence            57899999999999999999999998 6999999999988542   2333334556778899999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|++ ++++++|..++++++++|++++++||
T Consensus       111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~-~l~~~vG~~~A~~llltg~~i~A~eA  174 (268)
T 3i47_A          111 FGGGAGLAAACDIAIASTSARFCFSEVKLGLIPA---------------VISP-YVVRAIGERAAKMLFMSAEVFDATRA  174 (268)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCT---------------TTHH-HHHHHHCHHHHHHHHHHCCEEEHHHH
T ss_pred             EhHhHHHHHhCCEEEEcCCCEEECcccccCCCcc---------------cHHH-HHHHHhCHHHHHHHHHcCCccCHHHH
Confidence            9999999999999999999999999999999998               8777 89999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       175 ~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  212 (268)
T 3i47_A          175 YSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVKNSK  212 (268)
T ss_dssp             HHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999886

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=3.4e-45  Score=300.06  Aligned_cols=177  Identities=32%  Similarity=0.519  Sum_probs=166.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++  |+++|+|||||. |+.||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus        44 ~~~~L~~al~~~--d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  120 (275)
T 3hin_A           44 LMAALKDCLTDI--PDQIRAVVIHGI-GDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGG  120 (275)
T ss_dssp             HHHHHHHHTSSC--CTTCCEEEEEES-SSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHh--CcCceEEEEECC-CCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence            578899999998  689999999998 68999999999987655555556667788899999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       121 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~  185 (275)
T 3hin_A          121 GLELACAAHIRVAEASAYYALPEGSRGIFVG---------------GGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVH  185 (275)
T ss_dssp             HHHHHHHSSEEEEETTCEEECGGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHhCCEEEEcCCCEEECchhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|++|++.+|.+++.+|
T Consensus       186 GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K  220 (275)
T 3hin_A          186 GFSQYLIENGSAYDKALELGNRVAQNAPLTNFAVL  220 (275)
T ss_dssp             TSCSEEESSSCHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCEEeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.1e-44  Score=295.66  Aligned_cols=179  Identities=35%  Similarity=0.592  Sum_probs=165.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHH-HHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTL-RSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.++++++++|+++|+|||||+.|+.||+|.|++++.. .......+.+.+ ++++.++.++||||||+|||+|+|
T Consensus        36 ~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  114 (265)
T 2ppy_A           36 FYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-ADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVG  114 (265)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-SCHHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEET
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-cchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEee
Confidence            578999999999999999999999933799999999998865 222333444556 788899999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCc-eeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           80 GGLEMALACDLRICGEAA-LLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a-~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      ||++|+++||+||+++++ +|++||+++|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       115 gG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~  179 (265)
T 2ppy_A          115 GGLEMALACDLRFMGDEAGKIGLPEVSLGVLAG---------------TGGTQRLARLIGYSRALDMNITGETITPQEAL  179 (265)
T ss_dssp             HHHHHHHTSSEEEEETTCCCEECCGGGGTCCCT---------------TTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHH
T ss_pred             HHHHHHHhCCEEEEeCCCCEEECcccccCCCCC---------------chHHHHHHHHhCHHHHHHHHHhCCccCHHHHH
Confidence            999999999999999999 99999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       180 ~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  216 (265)
T 2ppy_A          180 EIGLVNRVFPQAETRERTREYARKLANSATYAVSNIK  216 (265)
T ss_dssp             HHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999998876

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=3.7e-45  Score=299.52  Aligned_cols=179  Identities=26%  Similarity=0.353  Sum_probs=167.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+.+|.++++.+++|+++|+|||||. |++||+|.|++++...  +......+...+++++.++.++||||||+|||+|+
T Consensus        41 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  119 (272)
T 3qk8_A           41 MHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAV  119 (272)
T ss_dssp             HHHHHHHHHHHHHHCTTCSEEEEEES-SSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEE
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECC-CCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence            57899999999999999999999998 6999999999988543  22333456677888999999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++|+||+
T Consensus       120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~  184 (272)
T 3qk8_A          120 GAGLVVALLADISVASATAKIIDGHTKLGVAAG---------------DHAAICWPLLVGMAKAKYYLLTCETLSGEEAE  184 (272)
T ss_dssp             HHHHHHHHHSSEEEEETTCEEECCHHHHTSCSC---------------SSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHH
T ss_pred             hHHHHHHHhCCEEEEcCCCEEECchhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHH
Confidence            999999999999999999999999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       185 ~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  221 (272)
T 3qk8_A          185 RIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTK  221 (272)
T ss_dssp             HHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999876

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=6.3e-46  Score=306.08  Aligned_cols=180  Identities=29%  Similarity=0.432  Sum_probs=163.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-----hhHHHHHHHHHHHHHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----SEIHFYVNTLRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      |+.+|.++++++++|+++|+|||||.|+++||+|.|++++.....     .....+...+++++.++.++||||||+|||
T Consensus        36 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G  115 (287)
T 3gkb_A           36 MMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAG  115 (287)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECS
T ss_pred             HHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            578999999999999999999999986689999999998753211     001112234567888999999999999999


Q ss_pred             cccchhHHHhhhCCEEEEeC-CceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCH
Q 029329           76 AALGGGLEMALACDLRICGE-AALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSG  154 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~-~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a  154 (195)
                      +|+|||++|+++||+||+++ +++|++||+++|++|+               +|+++++++++|..++++++++|++++|
T Consensus       116 ~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~---------------~g~~~~L~r~vG~~~A~ellltG~~i~A  180 (287)
T 3gkb_A          116 KARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPG---------------GGGTQYLRGRVGRNRALEVVLTADLFDA  180 (287)
T ss_dssp             EEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEH
T ss_pred             eeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence            99999999999999999999 9999999999999999               9999999999999999999999999999


Q ss_pred             HHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          155 KDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       155 ~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       181 ~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K  221 (287)
T 3gkb_A          181 ETAASYGWINRALPADELDEYVDRVARNIAALPDGVIEAAK  221 (287)
T ss_dssp             HHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999876

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=6.7e-45  Score=296.69  Aligned_cols=177  Identities=36%  Similarity=0.556  Sum_probs=165.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|++++...+...  .+.+.++.++.++.++||||||+|||+|+||
T Consensus        38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  114 (263)
T 3moy_A           38 LEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQ--ARERNLLSGWDSLTQVRKPIVAAVAGYALGG  114 (263)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEEESBCHHHHTTCCHHH--HHHTTTTHHHHHHTTCCSCEEEEECBEEETH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCeeCCcChHHHhccCchh--HHHHHHHHHHHHHHhCCCCEEEEECCEeehH
Confidence            57899999999999999999999995 89999999999986654433  2244566788899999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       115 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~  179 (263)
T 3moy_A          115 GCELAMLCDLVIAADTARFGQPEITLGILPG---------------LGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERV  179 (263)
T ss_dssp             HHHHHHHSSEEEEETTCEEECGGGGGTCCCS---------------SSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHT
T ss_pred             HHHHHHHCCEEEecCCCEEeCcccccCCCCc---------------hhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|++|+..+|.+++.+|
T Consensus       180 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  214 (263)
T 3moy_A          180 GLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVK  214 (263)
T ss_dssp             TSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCccEecCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=7.5e-45  Score=297.27  Aligned_cols=179  Identities=25%  Similarity=0.357  Sum_probs=165.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhH-HHHHHHHHHHHHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEI-HFYVNTLRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++....    .... ..+.+.+++++.++.++||||||+|||
T Consensus        31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  109 (269)
T 1nzy_A           31 AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAING  109 (269)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred             HHHHHHHHHHHHhhCCCeeEEEEECC-CCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            57899999999999999999999998 69999999999875432    1111 344556788889999999999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      +|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++
T Consensus       110 ~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~  174 (269)
T 1nzy_A          110 VAAGGGLGISLASDMAICADSAKFVCAWHTIGIGND---------------TATSYSLARIVGMRRAMELMLTNRTLYPE  174 (269)
T ss_dssp             EEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCC---------------TTHHHHHHHHHHHHHHHHHHHHCCCBCHH
T ss_pred             eeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCC---------------ccHHHHHHHHhhHHHHHHHHHcCCCCCHH
Confidence            999999999999999999999999999999999999               99999999999999999999999999999


Q ss_pred             HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       175 eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  214 (269)
T 1nzy_A          175 EAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAK  214 (269)
T ss_dssp             HHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999998876

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=7.7e-45  Score=294.29  Aligned_cols=178  Identities=25%  Similarity=0.328  Sum_probs=164.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEe-CCCCceEeccCcchhhcCChhhH-HHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRS-SVPKVFCAGADLKERRQMSPSEI-HFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g-~~~~~F~~G~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+++|.++++.+++|+++|+||||| . |+.||+|.|++++........ ..+...+++++.++.++||||||+|||+|+
T Consensus        28 ~~~~l~~al~~~~~d~~vr~vVltg~~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~  106 (250)
T 2a7k_A           28 LETSVKDALARANADDSVRAVVVYGGA-ERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAI  106 (250)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECCT-TSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEE
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEECCC-CCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCeEe
Confidence            5789999999999999999999999 6 799999999998865432222 345566788889999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               +|++ ++++++|..++++++++|++++++||+
T Consensus       107 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~  170 (250)
T 2a7k_A          107 GMGFQFALMFDQRLMASTANFVMPELKHGIGCS---------------VGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCV  170 (250)
T ss_dssp             THHHHHHTTSSEEEEETTCEEECCGGGGTCCCH---------------HHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHH
T ss_pred             HHHHHHHHhCCEEEEcCCCEEeCcccccCCCCC---------------cHHH-HHHHHhHHHHHHHHHHcCCcccHHHHH
Confidence            999999999999999999999999999999999               8888 999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       171 ~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  207 (250)
T 2a7k_A          171 DYRLVNQVVESSALLDAAITQAHVMASYPASAFINTK  207 (250)
T ss_dssp             HHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999998876

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1e-44  Score=297.86  Aligned_cols=179  Identities=21%  Similarity=0.352  Sum_probs=166.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC----hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+++|.++++++++|+++|+|||||. |++||+|.|++++....    ......+.+.+++++.++.++||||||+|||+
T Consensus        45 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  123 (279)
T 3g64_A           45 AYADLRDLLAELSRRRAVRALVLAGE-GRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGV  123 (279)
T ss_dssp             HHHHHHHHHHHHHHTTCCSEEEEEEC-SSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence            57899999999999999999999998 58999999999875421    12233556677889999999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeeccccccccc-CCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAII-PGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~-p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      |+|||++|+++||+||++++++|++||+++|++ |+               +|+++++++++|..++++++++|++++++
T Consensus       124 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~---------------~g~~~~l~r~vG~~~A~~l~ltg~~~~a~  188 (279)
T 3g64_A          124 AAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGD---------------MGAAYLLPRVVGLGHATRLLMLGDTVRAP  188 (279)
T ss_dssp             EETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCC---------------TTHHHHHHHHHCHHHHHHHHHHCCCEEHH
T ss_pred             eccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCc---------------hhHHHHHHHHhCHHHHHHHHHcCCCcCHH
Confidence            999999999999999999999999999999999 99               99999999999999999999999999999


Q ss_pred             HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       189 eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  228 (279)
T 3g64_A          189 EAERIGLISELTEEGRADEAARTLARRLADGPALAHAQTK  228 (279)
T ss_dssp             HHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999999876

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=2e-45  Score=298.71  Aligned_cols=179  Identities=23%  Similarity=0.310  Sum_probs=160.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhh-HHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|++++....... ...+...+++++.++.++||||||+|||+|+|
T Consensus        34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  112 (256)
T 3qmj_A           34 LYDATAQALLDAADDPQVAVVLLTGS-GRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVG  112 (256)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence            57899999999999999999999998 69999999999875321110 01123446788889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       113 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~  177 (256)
T 3qmj_A          113 IGATILGYADLAFMSSTARLKCPFTSLGVAPE---------------AASSYLLPQLVGRQNAAWLLMSSEWIDAEEALR  177 (256)
T ss_dssp             HHHHGGGGCSEEEEETTCEEECCGGGC---CC---------------TTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred             HHHHHHHhCCEEEEeCCCEEECcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       178 ~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  213 (256)
T 3qmj_A          178 MGLVWRICSPEELLPEARRHAEILAAKPISSLMAVK  213 (256)
T ss_dssp             HTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=1.3e-44  Score=293.82  Aligned_cols=173  Identities=25%  Similarity=0.426  Sum_probs=161.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++..      ..+...+++++.++.++||||||+|||+|+||
T Consensus        34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~------~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  106 (255)
T 3p5m_A           34 MLEELSVHIRDAEADESVRAVLLTGA-GRAFCSGGDLTGGDT------AGAADAANRVVRAITSLPKPVIAGVHGAAVGF  106 (255)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCEECC---CH------HHHHHHHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCCChhhhcc------hHHHHHHHHHHHHHHhCCCCEEEEeCCeehhh
Confidence            57899999999999999999999998 599999999998752      14566778899999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~  171 (255)
T 3p5m_A          107 GCSLALACDLVVAAPASYFQLAFTRVGLMPD---------------GGASALLPLLIGRARTSRMAMTAEKISAATAFEW  171 (255)
T ss_dssp             HHHHHHHSSEEEECTTCEEECGGGGGTCCCC---------------TTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHT
T ss_pred             HHHHHHHCCEEEEcCCcEEeCcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       172 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  206 (255)
T 3p5m_A          172 GMISHITSADEYESVLTDVLRSVSGGPTLAFGWTK  206 (255)
T ss_dssp             TSCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.4e-44  Score=293.81  Aligned_cols=177  Identities=27%  Similarity=0.454  Sum_probs=158.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHH-HHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++.......  .+.+ .+++++.++.++||||||+|||+|+|
T Consensus        31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  107 (257)
T 2ej5_A           31 MNAEVTKALKQAGADPNVRCVVITGA-GRAFCAGEDLSGVTEEMDHG--DVLRSRYAPMMKALHHLEKPVVAAVNGAAAG  107 (257)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCC-------CHH--HHHHHTHHHHHHHHHHCCSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCcCHHHHhhccchh--HHHHHHHHHHHHHHHhCCCCEEEEECccccc
Confidence            57899999999999999999999998 69999999999875432111  1112 36778889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       108 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~  172 (257)
T 2ej5_A          108 AGMSLALACDFRLLSEKASFAPAFIHVGLVPD---------------AGHLYYLPRLVGRAKALELAVLGEKVTAEEAAA  172 (257)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECCGGGGTCCCC---------------TTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHH
T ss_pred             hhHHHHHhCCEEEEcCCCEEeCcccccCCCCc---------------chHHHHHHHHhCHHHHHHHHHhCCccCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       173 ~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  208 (257)
T 2ej5_A          173 LGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIK  208 (257)
T ss_dssp             HTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999998876

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=7.3e-45  Score=296.63  Aligned_cols=178  Identities=25%  Similarity=0.343  Sum_probs=164.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.++++.+++|+++|+|||||. |+.||+|.|++ +...   +.+....+.+.+++++.++.++||||||+|||+|
T Consensus        38 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  115 (264)
T 1wz8_A           38 LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFG-LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVA  115 (264)
T ss_dssp             HHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEE
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECC-CCCCcccCccc-cccccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence            57899999999999999999999998 68999999998 6442   2122234456678888999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       116 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA  180 (264)
T 1wz8_A          116 VGAGLALALAADIAVVGKGTRLLDGHLRLGVAAG---------------DHAVLLWPLLVGMAKAKYHLLLNEPLTGEEA  180 (264)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCT---------------TTHHHHTHHHHCHHHHHHHHHHTCCEEHHHH
T ss_pred             echhHHHHHhCCEEEecCCCEEeCchhhcCcCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       181 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  218 (264)
T 1wz8_A          181 ERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTK  218 (264)
T ss_dssp             HHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999998876

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=1.6e-44  Score=293.71  Aligned_cols=177  Identities=33%  Similarity=0.599  Sum_probs=162.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++...... ...+...+ +++.++.++||||||+|||+|+||
T Consensus        33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~-~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~Gg  109 (258)
T 2pbp_A           33 MVAEIVAAVEAFDRNEKVRVIVLTGR-GRAFAAGADIQEMAKDDPI-RLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGG  109 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCCCHHHHHTCCHH-HHHHHCTT-HHHHHHHTCCSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccch-hHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhH
Confidence            57899999999999999999999997 7999999999987654321 22222334 677889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~  174 (258)
T 2pbp_A          110 GFELALSCDLIVASSAAEFGFPEVNLGVMPG---------------AGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQL  174 (258)
T ss_dssp             HHHHHHTSSEEEEETTCEEECGGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHT
T ss_pred             HHHHHHhCCEEEEcCCCEEECcccccCCCCc---------------ccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       175 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  209 (258)
T 2pbp_A          175 GIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIK  209 (258)
T ss_dssp             TSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=9.7e-45  Score=295.73  Aligned_cols=178  Identities=25%  Similarity=0.401  Sum_probs=165.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC------ChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM------SPSEIHFYVNTLRSTFSFLEALPIPTIAVID   74 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~   74 (195)
                      |+++|.++++.++.|+++|+|||||. |+.||+|.|++++...      +......+.+.+++++.++.++||||||+||
T Consensus        34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  112 (263)
T 3l3s_A           34 MIAALHDALRRAMGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVE  112 (263)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEEEEES
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            57899999999999999999999998 6999999999987653      2344556677888999999999999999999


Q ss_pred             CcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCH
Q 029329           75 GAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSG  154 (195)
Q Consensus        75 G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a  154 (195)
                      |+|+|||++|+++||+||++++++|++||+++|++ +               +|+++++++++|..++++++++|++++|
T Consensus       113 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~---------------~g~~~~l~r~vG~~~A~~l~ltg~~~~A  176 (263)
T 3l3s_A          113 GIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-C---------------TTPAVAVSRVIGRRAVTEMALTGATYDA  176 (263)
T ss_dssp             SEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-C---------------HHHHHHHHTTSCHHHHHHHHHHCCEEEH
T ss_pred             CEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-C---------------ccHHHHHHHHcCHHHHHHHHHcCCCCCH
Confidence            99999999999999999999999999999999999 5               6789999999999999999999999999


Q ss_pred             HHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          155 KDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       155 ~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||+++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       177 ~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  217 (263)
T 3l3s_A          177 DWALAAGLINRILPEAALATHVADLAGALAARNQAPLRRGL  217 (263)
T ss_dssp             HHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999886

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.3e-46  Score=301.27  Aligned_cols=179  Identities=23%  Similarity=0.321  Sum_probs=161.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHH-HcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++..........+...+++++.++ .++||||||+|||+|+|
T Consensus        40 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~G  118 (258)
T 3lao_A           40 MLADLALAMGEYERSEESRCAVLFAH-GEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWT  118 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEECC-CCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeEh
Confidence            57899999999999999999999998 57799999999986543322111222334556677 89999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       119 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~  183 (258)
T 3lao_A          119 AGIELMLNADIAVAARGTRFAHLEVLRGIPPL---------------GGSTVRFPRAAGWTDAMRYILTGDEFDADEALR  183 (258)
T ss_dssp             HHHHHHHTSSEEEEETTCEEECGGGGTCCCSS---------------CCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHH
T ss_pred             HHHHHHHhCCEEEEcCCCEEeCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       184 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  219 (258)
T 3lao_A          184 MRLLTEVVEPGEELARALEYAERIARAAPLAVRAAL  219 (258)
T ss_dssp             TTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=2.5e-44  Score=294.56  Aligned_cols=180  Identities=47%  Similarity=0.797  Sum_probs=165.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.+++|+++|+|||||.++++||+|.|++++...+......+...+++++.++.++||||||+|||+|+||
T Consensus        40 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  119 (272)
T 1hzd_A           40 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGG  119 (272)
T ss_dssp             HHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEec
Confidence            57899999999999999999999998668999999999886544444445566778889999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       120 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~  184 (272)
T 1hzd_A          120 GLELALACDIRVAASSAKMGLVETKLAIIPG---------------GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAV  184 (272)
T ss_dssp             HHHHHHHSSEEEEETTCEEECCGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHH
T ss_pred             HHHHHHhCCEEEEcCCCEEeCchhccCCCCC---------------chHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChH----HHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQA----QLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~----~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++    .+++.+++++++.+||.+++.+|
T Consensus       185 GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~~~~K  223 (272)
T 1hzd_A          185 GLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAK  223 (272)
T ss_dssp             TSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred             CCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999998874    55788999999999999998876

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.9e-44  Score=296.03  Aligned_cols=177  Identities=36%  Similarity=0.589  Sum_probs=162.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.|+++|+|||||. |++||+|.|++++.......  .+.......+.++.++||||||+|||+|+||
T Consensus        53 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  129 (278)
T 3h81_A           53 VMNEVTSAATELDDDPDIGAIIITGS-AKAFAAGADIKEMADLTFAD--AFTADFFATWGKLAAVRTPTIAAVAGYALGG  129 (278)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCBCSHHHHTCCHHH--HHHHTTTGGGHHHHTCCSCEEEEECBEEETH
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEECC-CCCeecCcCHHHHhccChhh--HHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence            57899999999999999999999996 89999999999987654332  1222222237789999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       130 G~~LalacD~ria~~~a~f~~pe~~lGl~p~---------------~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~  194 (278)
T 3h81_A          130 GCELAMMCDVLIAADTAKFGQPEIKLGVLPG---------------MGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERS  194 (278)
T ss_dssp             HHHHHHHSSEEEEETTCEEECGGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHHCCEEEEcCCCEEECchhhcCcCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       195 GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  229 (278)
T 3h81_A          195 GLVSRVVPADDLLTEARATATTISQMSASAARMAK  229 (278)
T ss_dssp             TSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCccEEeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=2.5e-44  Score=288.43  Aligned_cols=176  Identities=19%  Similarity=0.259  Sum_probs=163.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.+++++++.|+  ++||+||. |++||+|.|++++.. .+.....+...+++++.++.++||||||+|||+|+||
T Consensus        33 ~~~~L~~al~~~~~d~--~~vvltg~-g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  108 (232)
T 3ot6_A           33 VIIAFNAALDQAEKDR--AIVIVTGQ-PGILSGGYDLKVMTS-SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAK  108 (232)
T ss_dssp             HHHHHHHHHHHHHHTT--CEEEEECB-TEEEECCBCHHHHHH-CHHHHHHHHHHHHHHHHHHHTCSSCEEEECCEEEETH
T ss_pred             HHHHHHHHHHHHhcCC--CEEEEECC-CCCccCCcCHHHHhh-ChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehH
Confidence            5789999999999874  89999998 699999999999866 3444556677788999999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        81 G~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      |++|+++||+||++++ ++|++||+++|++|+               +++++++++++|..++++++++|++++|+||++
T Consensus       109 G~~lalacD~ria~~~~a~f~~pe~~~Gl~p~---------------~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~  173 (232)
T 3ot6_A          109 GAFLLLSADYRIGVAGPFSIGLNEVQIGMTMH---------------HAGIELARDRLRKSAFNRSVINAEMFDPEGAMA  173 (232)
T ss_dssp             HHHHHTTSSEEEEECSSCCEECCTTTTTCCCC---------------HHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHH
T ss_pred             HHHHHHHCCEEEEeCCCcEEECcccccCCCCc---------------hhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHH
Confidence            9999999999999998 899999999999988               788889999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       174 ~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  209 (232)
T 3ot6_A          174 AGFLDKVVSVEELQGAALAVAAQLKKINMNAHKKTK  209 (232)
T ss_dssp             HTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999887

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=3.1e-44  Score=294.55  Aligned_cols=177  Identities=22%  Similarity=0.350  Sum_probs=165.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+.+|.+++++++.|+++|+|||||. |++||+|.|++++...  +......+...+++++.++.++||||||+|||+|+
T Consensus        56 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  134 (276)
T 3rrv_A           56 LHVGLARLWQRLTDDPTARAAVITGA-GRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAV  134 (276)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECceee
Confidence            57899999999999999999999998 6999999999988643  23344456677888999999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       135 GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~  199 (276)
T 3rrv_A          135 GLGCSLVALSDIVYIAENAYLADPHVQVGLVAA---------------DGGPLTWPLHISLLLAKEYALTGTRISAQRAV  199 (276)
T ss_dssp             THHHHHHHTSSEEEEETTCEEECCHHHHTCCCC---------------SSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHH
T ss_pred             HHHHHHHHHCCEEEEeCCCEEECchhccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHH
Confidence            999999999999999999999999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+  +++.+++.++|+++++.||.+++.+|
T Consensus       200 ~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~~~K  234 (276)
T 3rrv_A          200 ELGLANHVA--DDPVAEAIACAKKILELPQQAVESTK  234 (276)
T ss_dssp             HHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999  88999999999999999999999876

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=1.9e-44  Score=294.38  Aligned_cols=176  Identities=24%  Similarity=0.335  Sum_probs=161.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhh---cCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR---QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.++++++++|+++|+|||||. |++||+|.|++++.   ....... .....+++++.++.++||||||+|||+|
T Consensus        33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kPvIAav~G~a  110 (266)
T 3fdu_A           33 LYLWIAKALDEADQNKDVRVVVLRGA-EHDFTAGNDMKDFMGFVQNPNAGP-AGQVPPFVLLKSAARLSKPLIIAVKGVA  110 (266)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHHHHHHSCCCSC-GGGSHHHHHHHHHHHCCSCEEEEECSEE
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEECC-CCCeECCcCHHHHhhhccccchhh-HHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence            57899999999999999999999998 68999999999886   4322211 1234566788899999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA  175 (266)
T 3fdu_A          111 IGIGVTILLQADLVFADNTALFQIPFVSLGLSPE---------------GGASQLLVKQAGYHKAAELLFTAKKFNAETA  175 (266)
T ss_dssp             ETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCC---------------TTHHHHHHHHHCHHHHHHHHHHCCEECHHHH
T ss_pred             ehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCc---------------chHHHHHHHHhCHHHHHHHHHhCCCcCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|  ++.+++.++|++|++.||.+++.+|
T Consensus       176 ~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~~~K  211 (266)
T 3fdu_A          176 LQAGLVNEIVE--DAYATAQATAQHLTALPLASLKQTK  211 (266)
T ss_dssp             HHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999  8999999999999999999999876

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=7.3e-44  Score=292.94  Aligned_cols=178  Identities=20%  Similarity=0.326  Sum_probs=160.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhh----HHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE----IHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+++|.+++++++.|+++ +|||||. |+.||+|.|++++.......    ...+...+++++.++.++||||||+|||+
T Consensus        54 ~~~~L~~al~~~~~d~~v-~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  131 (280)
T 2f6q_A           54 MYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGP  131 (280)
T ss_dssp             HHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSC
T ss_pred             HHHHHHHHHHHHhhCCCE-EEEEeCC-CCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence            578999999999999999 9999998 68999999999886533222    12234556788889999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++|+|
T Consensus       132 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~l~ltg~~~~A~e  196 (280)
T 2f6q_A          132 AVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPE---------------GCSSYTFPKIMSPAKATEMLIFGKKLTAGE  196 (280)
T ss_dssp             EETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCC---------------TTHHHHHHHHHCHHHHHHHHTTCCCEEHHH
T ss_pred             eehHHHHHHHhCCEEEECCCcEEECchHhhCCCCc---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       197 A~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  235 (280)
T 2f6q_A          197 ACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISK  235 (280)
T ss_dssp             HHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999998876

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=3.6e-44  Score=295.52  Aligned_cols=178  Identities=30%  Similarity=0.413  Sum_probs=167.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++++.++.|+++|+|||||. |+.||+|.|++++... +......+...+++++.++.++||||||+|||+|+|
T Consensus        54 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  132 (286)
T 3myb_A           54 MLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATA  132 (286)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEEC-SSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEET
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehH
Confidence            57899999999999999999999998 6999999999998763 334455677788899999999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++ +               +|+++++++++|..++++++++|++++++||++
T Consensus       133 gG~~lalacD~ria~~~a~f~~pe~~lGl~-~---------------~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~  196 (286)
T 3myb_A          133 AGCQLVAMCDLAVATRDARFAVSGINVGLF-C---------------STPGVALSRNVGRKAAFEMLVTGEFVSADDAKG  196 (286)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECGGGGGTCC-C---------------HHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHH
T ss_pred             HHHHHHHhCCEEEEcCCCEEECcccccCCC-C---------------chHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHH
Confidence            999999999999999999999999999999 6               788999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       197 ~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  232 (286)
T 3myb_A          197 LGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAMGK  232 (286)
T ss_dssp             HTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=1.8e-44  Score=295.89  Aligned_cols=180  Identities=27%  Similarity=0.423  Sum_probs=157.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEe-----CCCCceEeccCcchhhcCChhhHH-HHHHHHHHHHHHHHcCCCcEEEEEC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRS-----SVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTFSFLEALPIPTIAVID   74 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g-----~~~~~F~~G~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~kp~Iaav~   74 (195)
                      |+++|.+++++++.|+++|+|||||     .|+++||+|.|++++......... .....+++++.++.++||||||+||
T Consensus        38 ~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  117 (275)
T 4eml_A           38 TVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVA  117 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            5789999999999999999999999     755799999999987542111111 1112356788889999999999999


Q ss_pred             CcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCH
Q 029329           75 GAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSG  154 (195)
Q Consensus        75 G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a  154 (195)
                      |+|+|||++|+++||+||++++++|++||+++|++|+               .++++++++++|..++++++++|++++|
T Consensus       118 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~~g~~~L~r~vG~~~A~~llltg~~i~A  182 (275)
T 4eml_A          118 GYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDG---------------GFGSSYLARIVGQKKAREIWYLCRQYSA  182 (275)
T ss_dssp             SEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCC---------------STTTHHHHHHHCHHHHHHHHHHCCCEEH
T ss_pred             CeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCC---------------ccHHHHHHHHhHHHHHHHHHHhCCCcCH
Confidence            9999999999999999999999999999999999888               8889999999999999999999999999


Q ss_pred             HHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          155 KDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       155 ~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       183 ~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  223 (275)
T 4eml_A          183 QEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIRCLK  223 (275)
T ss_dssp             HHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999876

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=3.1e-44  Score=294.47  Aligned_cols=179  Identities=29%  Similarity=0.529  Sum_probs=163.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-------Ch----hhHHHHHHHHHHHHHHHHcCCCcE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-------SP----SEIHFYVNTLRSTFSFLEALPIPT   69 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~kp~   69 (195)
                      |+.+|.++|+++++|+++|+|||||. |++||+|.|++++...       +.    .....+...+++++.++.++||||
T Consensus        32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  110 (275)
T 1dci_A           32 FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV  110 (275)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            57899999999999999999999998 6999999999987532       11    012233456677888999999999


Q ss_pred             EEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcH-HHHHHHHHc
Q 029329           70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGK-SVAKDIIFT  148 (195)
Q Consensus        70 Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~-~~a~~l~l~  148 (195)
                      ||+|||+|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|. .++++++++
T Consensus       111 IAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~~A~~l~lt  175 (275)
T 1dci_A          111 IAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAAD---------------VGTLQRLPKVIGNRSLVNELTFT  175 (275)
T ss_dssp             EEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCC---------------SSHHHHGGGTCSCHHHHHHHHHH
T ss_pred             EEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCC---------------ccHHHHHHHHhCcHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999               9999999999999 999999999


Q ss_pred             CCCCCHHHHHhcCccceecCC-ChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          149 GRKVSGKDAMSLGLVNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       149 g~~~~a~eA~~~Glvd~v~~~-~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |++++++||+++||||+|+|+ +++.+++.++|++|++.||.+++.+|
T Consensus       176 g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~~~K  223 (275)
T 1dci_A          176 ARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSK  223 (275)
T ss_dssp             CCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999 99999999999999999999998876

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=4.9e-44  Score=295.29  Aligned_cols=180  Identities=29%  Similarity=0.428  Sum_probs=159.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh-------hHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-------EIHFYVNTLRSTFSFLEALPIPTIAVI   73 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~kp~Iaav   73 (195)
                      |+.+|.++++.++.|+++|+|||+|. |+.||+|.|++++......       ....+.+.+++++.++.++||||||+|
T Consensus        52 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  130 (290)
T 3sll_A           52 VMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAI  130 (290)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCeeEEEEECC-CCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            57899999999999999999999998 6999999999988653221       244566778889999999999999999


Q ss_pred             CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329           74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS  153 (195)
Q Consensus        74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~  153 (195)
                      ||+|+|||++|+++||+||++++++|++||+++|++|+.              +|+++++++++|..++++++++|++++
T Consensus       131 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~--------------~g~~~~L~r~vG~~~A~~llltG~~i~  196 (290)
T 3sll_A          131 NGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASE--------------LGLSYLLPRAIGTSRASDIMLTGRDVD  196 (290)
T ss_dssp             CSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCC--------------TTHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred             CCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCc--------------ccHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999940              477899999999999999999999999


Q ss_pred             HHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          154 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       154 a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+||+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       197 A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  238 (290)
T 3sll_A          197 ADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTK  238 (290)
T ss_dssp             HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999876

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=5.9e-45  Score=300.55  Aligned_cols=180  Identities=28%  Similarity=0.412  Sum_probs=163.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHH---HHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH---FYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++++.++.|+++|+|||||.|+++||+|.|++++.........   .+...+++++.++.++||||||+|||+|
T Consensus        35 ~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a  114 (289)
T 3h0u_A           35 VVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRA  114 (289)
T ss_dssp             HHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEE
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence            5789999999999999999999999866777888899987543221111   2334567888999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           78 LGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      +|||++|+++||+||++++ ++|++||+++|++|+               +|+++++++++|..++++++++|++++|+|
T Consensus       115 ~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~---------------~g~~~~L~r~vG~~~A~ellltG~~i~A~e  179 (289)
T 3h0u_A          115 RGAGSEFLLACDMRFASRENAILGQPEVGIGAPPG---------------AGAIQHLTRLLGRGRALEAVLTSSDFDADL  179 (289)
T ss_dssp             ETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHH
T ss_pred             ehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence            9999999999999999999 999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       180 A~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K  218 (289)
T 3h0u_A          180 AERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALIAAK  218 (289)
T ss_dssp             HHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999876

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.3e-44  Score=291.95  Aligned_cols=178  Identities=33%  Similarity=0.497  Sum_probs=161.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.++++.+++|+++|+|||||. |+.||+|.|++++...   +..........+++++.++.++||||||+|||+|
T Consensus        27 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a  105 (253)
T 1uiy_A           27 MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA  105 (253)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence            57899999999999999999999998 6999999999987543   2221111111267888899999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +| ++++++++|..++++++++|++++++||
T Consensus       106 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~---------------~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA  169 (253)
T 1uiy_A          106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA---------------LV-SVILVRAVGEKAAKDLLLTGRLVEAREA  169 (253)
T ss_dssp             ETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH---------------HH-HHHHHHHSCHHHHHHHHHHCCEEEHHHH
T ss_pred             eHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCc---------------hH-HHHHHHHhCHHHHHHHHHhCCccCHHHH
Confidence            9999999999999999999999999999999999               88 9999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       170 ~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  207 (253)
T 1uiy_A          170 KALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTK  207 (253)
T ss_dssp             HHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999998876

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=4.4e-44  Score=295.14  Aligned_cols=178  Identities=24%  Similarity=0.430  Sum_probs=163.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.++|+.+++|+++|+|||||. |+.||+|.|++++.... ......+...+++++.++.++||||||+|||+|+|
T Consensus        61 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  139 (287)
T 2vx2_A           61 MLKSLQSDILHDADSNDLKVIIISAE-GPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATA  139 (287)
T ss_dssp             HHHHHHHHHHTTTTCTTCCEEEEEES-SSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEc
Confidence            57899999999999999999999998 69999999999875432 22334455667888999999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++ +++++|..++++++++|++++|+||++
T Consensus       140 gG~~LalacD~ria~~~a~f~~pe~~lGl~p~---------------~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~  203 (287)
T 2vx2_A          140 AGCQLVASCDIAVASDKSSFATPGVNVGLFCS---------------TPGVA-LARAVPRKVALEMLFTGEPISAQEALL  203 (287)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECCGGGGTCCCH---------------HHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHH
T ss_pred             HHHHHHHhCCEEEEcCCCEEECchhhhCCCCc---------------hHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHH
Confidence            99999999999999999999999999999999               88899 999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|++|++.+|.+++.+|
T Consensus       204 ~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  239 (287)
T 2vx2_A          204 HGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGK  239 (287)
T ss_dssp             HTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999998876

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=3e-44  Score=296.35  Aligned_cols=180  Identities=24%  Similarity=0.442  Sum_probs=157.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh--hhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP--SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+++|.+++++++.|+++|+|||||.|+++||+|.|++++.....  .........+.+++.++.++||||||+|||+|+
T Consensus        56 ~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~  135 (289)
T 3t89_A           56 TVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSI  135 (289)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEEEECSEEE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEee
Confidence            578999999999999999999999985579999999998754221  111112234567888999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               .++++++++++|..++++++++|++++++||+
T Consensus       136 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~---------------~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~  200 (289)
T 3t89_A          136 GGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDG---------------GWGASYMARIVGQKKAREIWFLCRQYDAKQAL  200 (289)
T ss_dssp             THHHHHHHHSSEEEEETTCEEECCHHHHTCCCC---------------STTTHHHHHHHCHHHHHHHHHHCCCEEHHHHH
T ss_pred             hHHHHHHHhCCEEEEeCCCEEeccccccCCCCC---------------chHHHHHHHhcCHHHHHHHHHcCCcccHHHHH
Confidence            999999999999999999999999999998877               77799999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       201 ~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~~~K  237 (289)
T 3t89_A          201 DMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLK  237 (289)
T ss_dssp             HHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999876

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=4.6e-44  Score=290.79  Aligned_cols=178  Identities=21%  Similarity=0.348  Sum_probs=163.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.+++|+++|+|||||. |+.||+|.|++++...++.....+...+++++.++.++||||||+|||+|+ |
T Consensus        44 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-G  121 (257)
T 1szo_A           44 AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-N  121 (257)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-S
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEcC-CCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCchH-H
Confidence            57899999999999999999999998 689999999998754333333344555678888999999999999999999 5


Q ss_pred             hHHHhhhCCEEEEeCCceeec-ccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           81 GLEMALACDLRICGEAALLGL-PETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~-~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      |++|+++||+||++++++|++ ||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       122 G~~LalacD~ria~~~a~f~~~pe~~lGl~p~---------------~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~  186 (257)
T 1szo_A          122 APEIPVMSDIVLAAESATFQDGPHFPSGIVPG---------------DGAHVVWPHVLGSNRGRYFLLTGQELDARTALD  186 (257)
T ss_dssp             STHHHHTSSEEEEETTCEEECTTSGGGTCCCT---------------TTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHH
T ss_pred             HHHHHHHCCEEEEeCCCEEecCcccccccCCC---------------ccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHH
Confidence            999999999999999999999 9999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       187 ~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  222 (257)
T 1szo_A          187 YGAVNEVLSEQELLPRAWELARGIAEKPLLARRYAR  222 (257)
T ss_dssp             HTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCceEEeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=6.5e-45  Score=301.48  Aligned_cols=179  Identities=28%  Similarity=0.405  Sum_probs=152.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhc---CChh-----hHHHHHHHHHHHHHHHHcCCCcEEEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ---MSPS-----EIHFYVNTLRSTFSFLEALPIPTIAV   72 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~kp~Iaa   72 (195)
                      |+.+|.++|++++.|+++|+|||||. |++||+|.|++++..   .+..     ....+....+.++.++.++||||||+
T Consensus        58 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  136 (298)
T 3qre_A           58 LAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAA  136 (298)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC-----------------------------CCTTGGGGSSSCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            57899999999999999999999998 699999999998764   2211     11222333456677889999999999


Q ss_pred             ECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCC
Q 029329           73 IDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKV  152 (195)
Q Consensus        73 v~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~  152 (195)
                      |||+|+|||++|+++||+||++++++|++||+++|++|+               +|++++++|++|..++++++++|+++
T Consensus       137 V~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~ellltg~~i  201 (298)
T 3qre_A          137 INGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAE---------------FGISWILPRLTSWAVALDLLLSGRTF  201 (298)
T ss_dssp             ECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCT---------------TSHHHHHHHHSCHHHHHHHHHHCCEE
T ss_pred             ECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcc---------------hhHHHHHHHhcCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999               99999999999999999999999999


Q ss_pred             CHHHHHhcCccceecCCChHHHHHHHHHHHHhhc-CHHHHHhhC
Q 029329          153 SGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL  195 (195)
Q Consensus       153 ~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~-~~~~~~~~k  195 (195)
                      +|+||+++||||+|+|++++.+++.++|++|++. ||.+++.+|
T Consensus       202 ~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~~~K  245 (298)
T 3qre_A          202 LAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIK  245 (298)
T ss_dssp             EHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            9999999999999999999999999999999998 999999876

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=3.3e-44  Score=301.04  Aligned_cols=180  Identities=24%  Similarity=0.395  Sum_probs=160.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCC------ceEeccCcchhhcCCh-----------hhHHHHHHHHHHHHHHHH
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPK------VFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLE   63 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~------~F~~G~Dl~~~~~~~~-----------~~~~~~~~~~~~~~~~~~   63 (195)
                      |+++|.++|+.++.|+++|+|||||.|++      +||+|.|++++.....           .........+.+++.++.
T Consensus        85 ~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  164 (334)
T 3t8b_A           85 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIR  164 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999998544      8999999987643211           001111223567788899


Q ss_pred             cCCCcEEEEECCcccchhHHHhhhCCEEEEe-CCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHH
Q 029329           64 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVA  142 (195)
Q Consensus        64 ~~~kp~Iaav~G~a~ggG~~la~~~D~~va~-~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a  142 (195)
                      ++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+               +|++++|++++|..++
T Consensus       165 ~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~---------------~gg~~~L~r~vG~~~A  229 (334)
T 3t8b_A          165 FMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDG---------------GYGSAYLARQVGQKFA  229 (334)
T ss_dssp             HSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSC---------------CSCHHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCc---------------ccHHHHHHHHhhHHHH
Confidence            9999999999999999999999999999999 99999999999999999               9999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          143 KDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       143 ~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++++++|++++|+||+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       230 ~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~~~K  282 (334)
T 3t8b_A          230 REIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLK  282 (334)
T ss_dssp             HHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999887

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=3.9e-44  Score=294.00  Aligned_cols=179  Identities=30%  Similarity=0.462  Sum_probs=160.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC----ChhhHHHHHHHHHHH-HHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRST-FSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~kp~Iaav~G   75 (195)
                      |+.+|.++|+.+++|+++|+|||||. |+.||+|.|++++...    .......+....... +.++.++||||||+|||
T Consensus        37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  115 (276)
T 2j5i_A           37 LNREMIDVLETLEQDPAAGVLVLTGA-GEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNG  115 (276)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEEEEES-TTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            57899999999999999999999998 6899999999987421    111112222223333 56778999999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      +|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++
T Consensus       116 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~~l~ltg~~~~A~  180 (276)
T 2j5i_A          116 WCFGGGFSPLVACDLAICADEATFGLSEINWGIPPG---------------NLVSKAMADTVGHRQSLMYIMTGKTFGGQ  180 (276)
T ss_dssp             CEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCC---------------TTHHHHHHHHSCHHHHHHHHHHCCEEEHH
T ss_pred             eeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCc---------------chHHHHHHHHhCHHHHHHHHHhCCcccHH
Confidence            999999999999999999999999999999999999               99999999999999999999999999999


Q ss_pred             HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       181 eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  220 (276)
T 2j5i_A          181 KAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLRAAK  220 (276)
T ss_dssp             HHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999999876

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=7.4e-44  Score=290.42  Aligned_cols=178  Identities=24%  Similarity=0.339  Sum_probs=164.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.+++++++.|+++|+|||+|. |+.||+|.|++++... ++.....+...+++++.++.++||||||+|||+|+ 
T Consensus        52 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-  129 (263)
T 2j5g_A           52 THREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-  129 (263)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEECC-CCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-
Confidence            57899999999999999999999998 6899999999987643 22333344556678888999999999999999999 


Q ss_pred             hhHHHhhhCCEEEEeCCceeec-ccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           80 GGLEMALACDLRICGEAALLGL-PETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~-~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      ||++|+++||+||++++++|++ ||+++|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       130 GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~---------------~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~  194 (263)
T 2j5g_A          130 LHSEYILTTDIILASENTVFQDMPHLNAGIVPG---------------DGVHILWPLALGLYRGRYFLFTQEKLTAQQAY  194 (263)
T ss_dssp             SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCC---------------SSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHH
T ss_pred             HHHHHHHhCCEEEEcCCCEEecCcccccccCCC---------------ccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHH
Confidence            5999999999999999999999 9999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       195 ~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  231 (263)
T 2j5g_A          195 ELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLRYTR  231 (263)
T ss_dssp             HTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HCCCccEecChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999876

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=7.5e-44  Score=290.19  Aligned_cols=178  Identities=22%  Similarity=0.370  Sum_probs=162.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---C-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---S-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.+++++++.|+. ++|||||. |+.||+|.|++++...   + ......+...+++++.++.++||||||+|||+
T Consensus        34 ~~~~L~~al~~~~~d~~-r~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  111 (261)
T 2gtr_A           34 VMREVQSALSTAAADDS-KLVLLSAV-GSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGP  111 (261)
T ss_dssp             HHHHHHHHHHHHHHSSC-SCEEEEES-SSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             HHHHHHHHHHHHhcCCC-EEEEEecC-CCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            57899999999999874 99999998 6899999999987532   1 11233445567788889999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++|
T Consensus       112 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e  176 (261)
T 2gtr_A          112 AIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPD---------------GCSTVMFPKIMGGASANEMLLSGRKLTAQE  176 (261)
T ss_dssp             EETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCC---------------TTHHHHHHHHHCHHHHHHHHHHCCCEEHHH
T ss_pred             EeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCcc---------------chHHHHHHHHcCHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       177 A~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  215 (261)
T 2gtr_A          177 ACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESK  215 (261)
T ss_dssp             HHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999998876

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=3.3e-45  Score=298.81  Aligned_cols=178  Identities=28%  Similarity=0.476  Sum_probs=161.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++..........++.. ++++.++.++||||||+|||+|+||
T Consensus        35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAav~G~a~Gg  112 (265)
T 3qxz_A           35 LGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAAAETFAAPRNPDFSA-SPVQPAAFELRTPVIAAVNGHAIGI  112 (265)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCSTTCTTCCCCCCSSCCCS-CCSSSCGGGSSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECC-CCccccCcChHHHhhccchhHHHHHHH-HHHHHHHHhCCCCEEEEECCEEehH
Confidence            57899999999999999999999998 699999999998765422211111222 5667788999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++|+||+++
T Consensus       113 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~  177 (265)
T 3qxz_A          113 GMTLALHADIRILAEEGRYAIPQVRFGVAPD---------------ALAHWTLPRLVGTAVAAELLLTGASFSAQRAVET  177 (265)
T ss_dssp             HHHHHTTSSEEEEETTCCEECCGGGGTSCCC---------------TTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHH
T ss_pred             hHHHHHHCCEEEEcCCCEEECcccccCcCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhc-CHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~-~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|+++++. ||.+++.+|
T Consensus       178 GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~~~K  213 (265)
T 3qxz_A          178 GLANRCLPAGKVLGAALRMAHDIATNVAPESAALTK  213 (265)
T ss_dssp             TSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCccEeeCHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            99999999999999999999999999 999999876

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=5.7e-44  Score=290.74  Aligned_cols=177  Identities=36%  Similarity=0.617  Sum_probs=159.7

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.+++|+++|+|||||. |+.||+|.|++++......  ..+...+.+.+.++.++||||||+|||+|+||
T Consensus        35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  111 (260)
T 1mj3_A           35 LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQ--DCYSGKFLSHWDHITRIKKPVIAAVNGYALGG  111 (260)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCHH--HHHHC--CCGGGGGGGCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHhCCCeeEEEEECC-CCCccCCcChHhhhcccch--HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeH
Confidence            57899999999999999999999998 6999999999987543221  11222233346678899999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       112 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~  176 (260)
T 1mj3_A          112 GCELAMMCDIIYAGEKAQFGQPEILLGTIPG---------------AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQA  176 (260)
T ss_dssp             HHHHHHHSSEEEEETTCEEECGGGGGTCCCC---------------SSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHhCCEEEEcCCCEEeCcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       177 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  211 (260)
T 1mj3_A          177 GLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAK  211 (260)
T ss_dssp             TSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCccEEeChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=8.5e-44  Score=293.90  Aligned_cols=178  Identities=21%  Similarity=0.383  Sum_probs=162.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---C-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---S-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.++|+.++.|+. |+|||||. |+.||+|.|++++...   . ......+...+++++.++.++||||||+|||+
T Consensus        52 m~~~L~~al~~~~~d~~-r~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~  129 (291)
T 2fbm_A           52 VIKEIVNALNSAAADDS-KLVLFSAA-GSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP  129 (291)
T ss_dssp             HHHHHHHHHHHHHHSSC-SEEEEEEC-SSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             HHHHHHHHHHHHhcCCC-eEEEEECC-CCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            57899999999999875 99999998 6999999999987532   1 11233444567788889999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++|+|
T Consensus       130 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~---------------~g~~~~L~r~vG~~~A~el~ltg~~i~A~e  194 (291)
T 2fbm_A          130 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD---------------GCSSITFPKMMGKASANEMLIAGRKLTARE  194 (291)
T ss_dssp             EETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCC---------------TTHHHHHHHHHCHHHHHHHHTSCCEEEHHH
T ss_pred             eecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCc---------------ccHHHHHHHHHhHHHHHHHHHcCCccCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       195 A~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  233 (291)
T 2fbm_A          195 ACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECK  233 (291)
T ss_dssp             HHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999876

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=2e-44  Score=295.97  Aligned_cols=179  Identities=31%  Similarity=0.494  Sum_probs=149.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHH---cCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLE---ALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++++++++|+++|+|||+|. |+.||+|.|++++...............+.++..+.   ++||||||+|||+|
T Consensus        48 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a  126 (278)
T 4f47_A           48 MMQIMVEAWDRVDNDPDIRCCILTGA-GGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPA  126 (278)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCCC----------------------CTTCBTTTTBSCCCSSCEEEEECSEE
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECC-CCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEE
Confidence            57899999999999999999999998 689999999998765432211111112334455566   89999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       127 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA  191 (278)
T 4f47_A          127 IAGGTEILQGTDIRVAAESAKFGISEAKWSLYPM---------------GGSAVRLVRQIPYTVACDLLLTGRHITAAEA  191 (278)
T ss_dssp             ETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCT---------------TSHHHHHHHHSCHHHHHHHHHHCCCEEHHHH
T ss_pred             ehHHHHHHHhCCEEEEcCCCEEECcccccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|++++.+++.++|+++++.+|.+++.+|
T Consensus       192 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  229 (278)
T 4f47_A          192 KEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQAIL  229 (278)
T ss_dssp             HHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999876

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=2.1e-44  Score=293.41  Aligned_cols=178  Identities=24%  Similarity=0.449  Sum_probs=159.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEe-CCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRS-SVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g-~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.++++.+++|+ +|+||||| .|++.||+|.|++++...+.... .+...+++++.++.++||||||+|||+|+|
T Consensus        32 ~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  109 (261)
T 1ef8_A           32 FIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPL-SYDDPLRQITRMIQKFPKPIISMVEGSVWG  109 (261)
T ss_dssp             HHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTT-CTTSHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhH-HHHHHHHHHHHHHHhCCCCEEEEECCEEEe
Confidence            5789999999999999 99999999 85499999999998754221111 112345778889999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       110 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~  174 (261)
T 1ef8_A          110 GAFEMIMSSDLIIAASTSTFSMTPVNLGVPYN---------------LVGIHNLTRDAGFHIVKELIFTASPITAQRALA  174 (261)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECCHHHHTCCCC---------------HHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHH
T ss_pred             HhHHHHHhCCEEEecCCCEEeCchhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       175 ~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  210 (261)
T 1ef8_A          175 VGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIK  210 (261)
T ss_dssp             TTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999998876

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=7.3e-45  Score=296.28  Aligned_cols=177  Identities=38%  Similarity=0.505  Sum_probs=158.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++++++|+++|+|||||. |+.||+|.|++++..........  .....+...+.++||||||+|||+|+||
T Consensus        39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIAav~G~a~Gg  115 (262)
T 3r9q_A           39 TAAALLAAFTEFDADPEASVAVLWGD-NGTFCAGADLKAMGTDRGNELHP--HGPGPMGPSRLRLSKPVIAAISGHAVAG  115 (262)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCTTTTTSTTSCCCCT--TSSCTTSSTTCCCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHhccChhhHHH--hhhhHHHHHHHhCCCCEEEEECCeeehh
Confidence            57899999999999999999999998 68999999999886533211100  0112233355689999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       116 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~  180 (262)
T 3r9q_A          116 GIELALWCDLRVVEEDAVLGVFCRRWGVPLI---------------DGGTIRLPRLIGHSRAMDLILTGRPVHANEALDI  180 (262)
T ss_dssp             HHHHHHHSSEEEEETTCEEECTHHHHTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHT
T ss_pred             hhHHHHhCCEEEEeCCCEEecchhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       181 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  215 (262)
T 3r9q_A          181 GLVNRVVARGQAREAAETLAAEIAAFPQQCVRADR  215 (262)
T ss_dssp             TSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999886

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=4e-43  Score=286.76  Aligned_cols=176  Identities=23%  Similarity=0.379  Sum_probs=156.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhh-cCChhh----HHHHHHHHHHHHHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR-QMSPSE----IHFYVNTLRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      |+.+|.+++++++.|+++|+|||||. |++||+|.|++++. ..+...    ...+.+.+++++.++.++||||||+|||
T Consensus        39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  117 (267)
T 3oc7_A           39 LVSQLHQGLRDASSDPAVRVVVLAHT-GGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDG  117 (267)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEEC-SSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            57899999999999999999999998 68999999999876 222222    1245677888999999999999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      +|+|||++|+++||+||++++++|++||+++|++|+               +|++++++ ++|..++++++++|++++++
T Consensus       118 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~-~vG~~~A~~l~ltg~~~~a~  181 (267)
T 3oc7_A          118 HVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPA---------------IISLTLLP-KLSARAAARYYLTGEKFDAR  181 (267)
T ss_dssp             EEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCT---------------TTHHHHTT-TSCHHHHHHHHHHCCCBCHH
T ss_pred             eecccchHHHHHCCEEEEcCCCEEeCcccccCCCcc---------------hhHHHHHH-HhCHHHHHHHHHcCCccCHH
Confidence            999999999999999999999999999999999999               99999999 99999999999999999999


Q ss_pred             HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++||||+|  ++++.+++.++++++++.||.+++.+|
T Consensus       182 eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~~~K  219 (267)
T 3oc7_A          182 RAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLAASK  219 (267)
T ss_dssp             HHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999  788999999999999999999999876

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=3.8e-45  Score=298.45  Aligned_cols=179  Identities=26%  Similarity=0.331  Sum_probs=158.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHH-HcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++++++++|+++|+|||||. |+.||+|.|++++..........+.....+.+.++ .++||||||+|||+|+|
T Consensus        37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~G  115 (265)
T 3swx_A           37 MLEELALALGEYETDTDLRAAVLYGE-GPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLT  115 (265)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCCCSSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeh
Confidence            57899999999999999999999998 56799999999875421111001112223445567 89999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       116 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~  180 (265)
T 3swx_A          116 LGIELALAADIVIADETATFAQLEVNRGIYPF---------------GGATIRFPRTAGWGNAMRWMLTADTFDAVEAHR  180 (265)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECGGGGGTSCCC---------------SSHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHH
T ss_pred             HHHHHHHHCCEEEEcCCCEEECcccccccCCC---------------ccHHHHHHHHhhHHHHHHHHHcCCcCCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       181 ~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  216 (265)
T 3swx_A          181 IGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQATL  216 (265)
T ss_dssp             TTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cCCCCEecChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.9e-44  Score=294.62  Aligned_cols=179  Identities=32%  Similarity=0.423  Sum_probs=156.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++++++|+++|+|||||.|+++||+|.|++++..................+ ...++||||||+|||+|+||
T Consensus        37 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kPvIAav~G~a~Gg  115 (267)
T 3r9t_A           37 VSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGY-VRHFIDKPTIAAVNGTALGG  115 (267)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGT-TTCCCSSCEEEEECSEECTH
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHH-HHHhCCCCEEEEECCEEEhH
Confidence            57899999999999999999999998557999999999986532211100000000111 12389999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       116 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA~~~  180 (267)
T 3r9t_A          116 GTELALASDLVVADERAQFGLPEVKRGLIAA---------------AGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDW  180 (267)
T ss_dssp             HHHHHHHSSEEEEETTCEECCGGGGTTCCCT---------------TTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHhCCEEEEcCCCEEECcccccCCCCC---------------ccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       181 GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  215 (267)
T 3r9t_A          181 GLINEVVEAGSVLDAALALASAITVNAPLSVQASK  215 (267)
T ss_dssp             TSSSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCccEEcChhHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            99999999999999999999999999999999886

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=9.2e-44  Score=290.24  Aligned_cols=176  Identities=31%  Similarity=0.429  Sum_probs=154.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHH-HHHHH-H--cCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS-TFSFL-E--ALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~kp~Iaav~G~   76 (195)
                      |+++|.++++++++|+++|+|||||. |++||+|.|++ ..  .......+....++ ++.++ .  ++||||||+|||+
T Consensus        37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~  112 (265)
T 3rsi_A           37 MVSQFAAAWDEIDHDDGIRAAILTGA-GSAYCVGGDLS-DG--WMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGA  112 (265)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC-----------------CCCHHHHHHHTTSSCCCSSCEEEEECSC
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCCC-cc--cccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCe
Confidence            57899999999999999999999998 58999999998 22  11111122223345 77888 8  9999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++|
T Consensus       113 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e  177 (265)
T 3rsi_A          113 CLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPG---------------AGSMVRLKRQIPYTKAMEMILTGEPLTAFE  177 (265)
T ss_dssp             EETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCT---------------TTHHHHHHHHSCHHHHHHHHHHCCCEEHHH
T ss_pred             eeHHHHHHHHHCCEEEecCCCEEECchhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++|++|+..||.+++.+|
T Consensus       178 A~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  216 (265)
T 3rsi_A          178 AYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVRNAK  216 (265)
T ss_dssp             HHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999876

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=5.5e-44  Score=292.71  Aligned_cols=179  Identities=25%  Similarity=0.457  Sum_probs=156.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCC-ceEeccCcchhhcCChhhHHHH-HHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPK-VFCAGADLKERRQMSPSEIHFY-VNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~-~F~~G~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+++|.++++.+++|+++|+|||||. |+ +||+|.|++++..........+ ...+++++..+.++||||||+|||+|+
T Consensus        41 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  119 (273)
T 2uzf_A           41 TVAEMIDAFSRARDDQNVSVIVLTGE-GDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAV  119 (273)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSEEEECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEEEECEEEE
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEecC-CCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEECCEEe
Confidence            57899999999999999999999998 56 9999999998743111000000 011456777888999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~  184 (273)
T 2uzf_A          120 GGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDA---------------GYGSGYLARIVGHKKAREIWYLCRQYNAQEAL  184 (273)
T ss_dssp             THHHHHHHHSSEEEEETTCEEECCGGGTTCCCC---------------STTTHHHHHHHCHHHHHHHHHTCCCEEHHHHH
T ss_pred             ehhHHHHHhCCEEEEcCCCEEECchhhhCCCCc---------------hhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHH
Confidence            999999999999999999999999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++|+++++.+|.+++.+|
T Consensus       185 ~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  221 (273)
T 2uzf_A          185 DMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLK  221 (273)
T ss_dssp             HHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999998876

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=3e-44  Score=291.75  Aligned_cols=170  Identities=32%  Similarity=0.478  Sum_probs=155.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++++++|+++|+|||||. |+.||+|.|++++...         ..++.+..++.++||||||+|||+|+||
T Consensus        37 ~~~~L~~al~~~~~d~~vr~vvltg~-g~~F~aG~Dl~~~~~~---------~~~~~~~~~l~~~~kPvIAav~G~a~Gg  106 (256)
T 3pe8_A           37 LRSTFFRALSDAQNDDDVDVVIVTGA-DPVFCAGLDLKELGDT---------TELPDISPKWPDMTKPVIGAINGAAVTG  106 (256)
T ss_dssp             HHHHHHHHHHHHHHCTTCSEEEEEES-TTCSBCCBCTTTC------------------CCCCCCCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhhh---------HHHHHHHHHHHhCCCCEEEEECCeeech
Confidence            57899999999999999999999998 6899999999987542         1233444667889999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~  171 (256)
T 3pe8_A          107 GLELALYCDILIASENAKFADTHARVGLMPT---------------WGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRA  171 (256)
T ss_dssp             HHHHHHHSSEEEEETTCEEECCHHHHTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHhCCEEEEcCCCEEECchhhhCCCCc---------------ccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       172 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  206 (256)
T 3pe8_A          172 GLVTEVVAHDDLLTAARRVAASIVGNNQKAVRALL  206 (256)
T ss_dssp             TSCSCEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=2.3e-44  Score=290.38  Aligned_cols=174  Identities=21%  Similarity=0.347  Sum_probs=159.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++........     ..++++.++.++||||||+|||+|+||
T Consensus        31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~-----~~~~~~~~l~~~~kPvIAav~G~a~Gg  104 (243)
T 2q35_A           31 IVEGLRHCFSVVAQNQQYKVVILTGY-GNYFSSGASKEFLIRKTRGEV-----EVLDLSGLILDCEIPIIAAMQGHSFGG  104 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECBSCHHHHHHHHTTCC-----CCCCCHHHHHTCCSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCCChHHHhhccchhh-----HHHHHHHHHHhCCCCEEEEEcCccccc
Confidence            57899999999999999999999998 699999999988643111100     124567788999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       105 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~  169 (243)
T 2q35_A          105 GLLLGLYADFVVFSQESVYATNFMKYGFTPV---------------GATSLILREKLGSELAQEMIYTGENYRGKELAER  169 (243)
T ss_dssp             HHHHHHTSSEEEEESSSEEECCHHHHTSCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHT
T ss_pred             hHHHHHhCCEEEEeCCCEEECCccccCCCCc---------------chHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       170 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  204 (243)
T 2q35_A          170 GIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALK  204 (243)
T ss_dssp             TCSSCEECHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCEecChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998876

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=2.6e-43  Score=289.66  Aligned_cols=179  Identities=18%  Similarity=0.196  Sum_probs=159.9

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC--h-----hhHH----HHHHHHHHHHHHHHcCCCcE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--P-----SEIH----FYVNTLRSTFSFLEALPIPT   69 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~--~-----~~~~----~~~~~~~~~~~~~~~~~kp~   69 (195)
                      |+.+|.++++.++.|+++|+|||||. |++||+|.|++++....  .     ....    .++...++++.++.++||||
T Consensus        37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  115 (280)
T 1pjh_A           37 DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVL  115 (280)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            57899999999999999999999998 69999999999875321  1     1111    22233467888999999999


Q ss_pred             EEEECCcccchhHHHhhhCCEEEEe-CCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHc
Q 029329           70 IAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFT  148 (195)
Q Consensus        70 Iaav~G~a~ggG~~la~~~D~~va~-~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~  148 (195)
                      ||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+               +|+++++++++|..++++++++
T Consensus       116 IAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~---------------~g~~~~l~r~vG~~~A~~lllt  180 (280)
T 1pjh_A          116 ICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITE---------------GGTTVSLPLKFGTNTTYECLMF  180 (280)
T ss_dssp             EEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCC---------------TTHHHHHHHHHCHHHHHHHHHT
T ss_pred             EEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCC---------------ccHHHHHHHHhCHHHHHHHHHh
Confidence            9999999999999999999999999 99999999999999999               9999999999999999999999


Q ss_pred             CCCCCHHHHHhcCccceecCCC-----hHHHHHH-HHHHHHhhcCHHHHHhhC
Q 029329          149 GRKVSGKDAMSLGLVNYYVPAG-----QAQLKAL-EIAQEINQKVQSVFRILL  195 (195)
Q Consensus       149 g~~~~a~eA~~~Glvd~v~~~~-----~~~~~a~-~~a~~~~~~~~~~~~~~k  195 (195)
                      |++++++||+++||||+|+|++     ++.+++. ++++++++.||.+++.+|
T Consensus       181 g~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K  233 (280)
T 1pjh_A          181 NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMK  233 (280)
T ss_dssp             TCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999986     7888885 999999999999999876

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=6.2e-43  Score=283.76  Aligned_cols=175  Identities=18%  Similarity=0.308  Sum_probs=161.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.+++ +++|+|||||. |++||+|.|++++..............+++++.++.++||||||+|||+|+||
T Consensus        35 ~~~~L~~al~~~~~-~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  112 (254)
T 3isa_A           35 LVEALIDGVDAAHR-EQVPLLVFAGA-GRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGA  112 (254)
T ss_dssp             HHHHHHHHHHHHHH-TTCSEEEEEES-TTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETH
T ss_pred             HHHHHHHHHHHhhc-CCcEEEEEECC-CCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeec
Confidence            57899999999987 58999999998 69999999999987655544444455678889999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+                  ++++++++|..++++++++|++++++||+++
T Consensus       113 G~~lalacD~ria~~~a~f~~pe~~~Gl~pg------------------~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~  174 (254)
T 3isa_A          113 GVDLFAACKWRYCTPEAGFRMPGLKFGLVLG------------------TRRFRDIVGADQALSILGSARAFDADEARRI  174 (254)
T ss_dssp             HHHHHHHSSEEEECTTCEEECCGGGGTCCCS------------------HHHHHHHHCHHHHHHHHTTTCEEEHHHHHHT
T ss_pred             chhHHHhCCEEEEcCCCEEECchhccCccHH------------------HHHHHHHcCHHHHHHHHHhCCCCcHHHHHHC
Confidence            9999999999999999999999999999886                  6889999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       175 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  209 (254)
T 3isa_A          175 GFVRDCAAQAQWPALIDAAAEAATALDPATRATLH  209 (254)
T ss_dssp             TSSSEECCGGGHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=7.5e-43  Score=295.09  Aligned_cols=164  Identities=23%  Similarity=0.452  Sum_probs=151.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhc---CChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ---MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++|+++++|+++|+|||||.|+++||+|.|++++..   .+......+....++++.++.++||||||+|||+|
T Consensus        37 m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a  116 (353)
T 4hdt_A           37 MVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIV  116 (353)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEEEEeECce
Confidence            678999999999999999999999997689999999998753   23445566777888899999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|++++++|++| .+++++++||++++|+||
T Consensus       117 ~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~---------------~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA  180 (353)
T 4hdt_A          117 MGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPD---------------VGGTYLLSRAPG-KLGLHAALTGAPFSGADA  180 (353)
T ss_dssp             ETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCC---------------TTHHHHHHTSST-THHHHHHHHCCCBCHHHH
T ss_pred             eecCccccCCcCeeccchhccccCcccccccCCC---------------ccceehhhhhhh-HHHHHHHhcCCCCCHHHH
Confidence            9999999999999999999999999999999999               999999999999 589999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHH
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIA  180 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a  180 (195)
                      +++||||+|+|++++.+.+.+++
T Consensus       181 ~~~GLv~~vv~~~~l~~~a~~la  203 (353)
T 4hdt_A          181 IVMGFADHYVPHDKIDEFTRAVI  203 (353)
T ss_dssp             HHHTSCSEECCGGGHHHHHHHHH
T ss_pred             HHcCCCcEEeCHHHHHHHHHHHH
Confidence            99999999999999988887663

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=6.9e-43  Score=293.40  Aligned_cols=176  Identities=23%  Similarity=0.313  Sum_probs=155.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh------------------------------hHHH
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS------------------------------EIHF   50 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~------------------------------~~~~   50 (195)
                      |+.+|.++|++++.|+++|+|||+|. |+.||+|.|++++......                              ....
T Consensus        63 m~~eL~~al~~~~~d~~vrvvVltG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (333)
T 3njd_A           63 TPLELSALVERADLDPDVHVILVSGR-GEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQ  141 (333)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTSSBCCBC---------------CCTTSTTCHHHHHHTTCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecCcCHHHHhhcccccccccccccccccccccccccccccccchhhHHH
Confidence            57899999999999999999999998 6899999999987542211                              1224


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCcc
Q 029329           51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGT  130 (195)
Q Consensus        51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~  130 (195)
                      +...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+               .|  
T Consensus       142 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~---------------~g--  204 (333)
T 3njd_A          142 MMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPA---------------AG--  204 (333)
T ss_dssp             HHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCT---------------TC--
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCH---------------HH--
Confidence            5566778888999999999999999999999999999999999999999999999999998               65  


Q ss_pred             chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          131 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       131 ~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                       ++++++|..++++++++|++++|+||+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       205 -~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~~~K  268 (333)
T 3njd_A          205 -LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLIMAK  268 (333)
T ss_dssp             -CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence             5789999999999999999999999999999999999999999999999999999999999887

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=7.6e-43  Score=289.96  Aligned_cols=178  Identities=24%  Similarity=0.408  Sum_probs=158.3

Q ss_pred             CHHHHHHHHHHhhc-----CCCcEEEEEEeCCCCceEeccCcchhhcC----ChhhHHHHHHHHHHHHHHH---HcCCCc
Q 029329            1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFL---EALPIP   68 (195)
Q Consensus         1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~kp   68 (195)
                      |+.+|.++|+.++.     |+++|+|||+|. |++||+|.|++++...    +......+...+.+.+..+   ..+|||
T Consensus        64 m~~eL~~al~~~~~d~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kP  142 (305)
T 3m6n_A           64 LVDDITGYQTNLGQRLNTAGVLAPHVVLASD-SDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAH  142 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEEES-SSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCE
T ss_pred             HHHHHHHHHHHHHhcccccCCCeEEEEEECC-CCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            57899999999987     589999999997 7999999999987542    2223333444444555544   468999


Q ss_pred             EEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHc
Q 029329           69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFT  148 (195)
Q Consensus        69 ~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~  148 (195)
                      |||+|||+|+|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++
T Consensus       143 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~lllt  207 (305)
T 3m6n_A          143 SIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPG---------------MGAYSFMCQRISAHLAQKIMLE  207 (305)
T ss_dssp             EEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCC---------------SSHHHHHTTTSCHHHHHHHHHH
T ss_pred             EEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCC---------------ccHHHHHHHHhcHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999               9999999999999999999999


Q ss_pred             CCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          149 GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       149 g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |++++|+||+++||||+|+|++++.+++.++|++|++ +|.+++.+|
T Consensus       208 G~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~a~~~~K  253 (305)
T 3m6n_A          208 GNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPHAWAAMQ  253 (305)
T ss_dssp             CCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred             CCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChHHHHHHH
Confidence            9999999999999999999999999999999999997 889888776

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=1.4e-42  Score=285.23  Aligned_cols=177  Identities=27%  Similarity=0.407  Sum_probs=154.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh----h-hHHHHHHHHHHHHHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP----S-EIHFYVNTLRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      |+++|.+++++++.|+++|+|||+|. |++||+|.|++++.....    . ........+.+++.++.++||||||+|||
T Consensus        48 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  126 (279)
T 3t3w_A           48 LLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQG  126 (279)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEEC-SSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCEEEEECS
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEECC-CCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            57899999999999999999999998 689999999998764321    1 11222345667888999999999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      +|+|||++|+++||+||++++++|++||+++|+ |+               .++..+ ++++|..++++++++|++++++
T Consensus       127 ~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~---------------~~~~~~-~~~vG~~~A~~llltG~~i~A~  189 (279)
T 3t3w_A          127 RCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GG---------------VEYHGH-TWELGPRKAKEILFTGRAMTAE  189 (279)
T ss_dssp             EEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SS---------------CSSCCH-HHHHCHHHHHHHHHHCCCEEHH
T ss_pred             eEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CC---------------chHHHH-HhhcCHHHHHHHHHcCCccCHH
Confidence            999999999999999999999999999999999 44               444443 9999999999999999999999


Q ss_pred             HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       190 eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  229 (279)
T 3t3w_A          190 EVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALRQAK  229 (279)
T ss_dssp             HHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999876

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=5e-44  Score=293.08  Aligned_cols=178  Identities=21%  Similarity=0.350  Sum_probs=154.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-------hhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-------SEIHFYVNTLRSTFSFLEALPIPTIAVI   73 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~kp~Iaav   73 (195)
                      |+.+|.++++.+++|+++|+|||||. |++||+|.|++++.....       ......+..+++++.++.++||||||+|
T Consensus        39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  117 (274)
T 3tlf_A           39 MITELRAAYHEAENDDRVWLLVVTGT-GRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAV  117 (274)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCSCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEeCC-CCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            57899999999999999999999998 599999999998754322       1111122234566777889999999999


Q ss_pred             CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCC--C
Q 029329           74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGR--K  151 (195)
Q Consensus        74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~--~  151 (195)
                      ||+|+|||++|+++||+||++++++|++||+++|++|                +|+++++++++|..++++++++|+  +
T Consensus       118 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p----------------~g~~~~L~r~vG~~~A~~l~ltg~~~~  181 (274)
T 3tlf_A          118 NGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA----------------GRELVRVSRVLPRSIALRMALMGKHER  181 (274)
T ss_dssp             CSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC----------------CHHHHHHTTTSCHHHHHHHHHHGGGCC
T ss_pred             CCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc----------------chHHHHHHHHhCHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999999999999988                467899999999999999999999  9


Q ss_pred             CCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          152 VSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       152 ~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++|+||+++||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       182 ~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  225 (274)
T 3tlf_A          182 MSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVRGTR  225 (274)
T ss_dssp             EEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999876

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=3.3e-43  Score=286.98  Aligned_cols=173  Identities=29%  Similarity=0.469  Sum_probs=150.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHH-HHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRST-FSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+++|.+++++++.|+++|+|||||. |+.||+|.|++++..........     +.+ +..+.. ||||||+|||+|+|
T Consensus        43 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~-----~~~~~~~~~~-~kPvIAav~G~a~G  115 (265)
T 3qxi_A           43 VSRALADAMDRLDADAGLSVGILTGA-GGSFCAGMDLKAFARGENVVVEG-----RGLGFTERPP-AKPLIAAVEGYALA  115 (265)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCCCCSBC-------CCCEETT-----TEETTTTSCC-SSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEECC-CCCeeCCCChhhhhccchhhhhh-----hhhhHHHhhC-CCCEEEEECCceeH
Confidence            57899999999999999999999998 58999999999875432111100     111 233334 99999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       116 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~  180 (265)
T 3qxi_A          116 GGTELALATDLIVAARDSAFGIPEVKRGLVAG---------------GGGLLRLPERIPYAIAMELALTGDNLSAERAHA  180 (265)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECGGGGGTCCCC---------------SSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHH
T ss_pred             HHHHHHHhCCEEEEcCCCEEECcccccCcCCc---------------ccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|++|++.||.+++.+|
T Consensus       181 ~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  216 (265)
T 3qxi_A          181 LGMVNVLAEPGAALDAAIALAEKITANGPLAVAATK  216 (265)
T ss_dssp             TTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCccEeeChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.2e-42  Score=283.80  Aligned_cols=175  Identities=20%  Similarity=0.279  Sum_probs=155.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC--hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+.+|.++++++++| ++|+|||||. |+.||+|.|++++....  ......+...+++++.++.++||||||+|||+|+
T Consensus        35 ~~~~L~~al~~~~~d-~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  112 (267)
T 3hp0_A           35 LIEECLQVLNQCETS-TVTVVVLEGL-PEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVN  112 (267)
T ss_dssp             HHHHHHHHHHHHHHS-SCCEEEEECC-SSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEECSEEE
T ss_pred             HHHHHHHHHHHHhcC-CCEEEEEECC-CCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEe
Confidence            578999999999986 6999999998 69999999999886531  1112223456678888999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               +| ++++++++|..++++++++|++++|+||+
T Consensus       113 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g-~~~l~r~vG~~~A~ellltg~~i~A~eA~  176 (267)
T 3hp0_A          113 AGGLGFVSATDIAIADQTASFSLSELLFGLYPA---------------CV-LPFLIRRIGRQKAHYMTLMTKPISVQEAS  176 (267)
T ss_dssp             TTHHHHHHHSSEEEECTTCEEECCGGGGTCCCT---------------TT-HHHHHHHHCHHHHHHHHHHCCCBCHHHHH
T ss_pred             ehHHHHHHhCCEEEEcCCCEEECchhccCcCch---------------hH-HHHHHHHhCHHHHHHHHHcCCCCCHHHHH
Confidence            999999999999999999999999999999998               75 67899999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|+.+  +.+.++++++++.||.+++.+|
T Consensus       177 ~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a~~~~K  211 (267)
T 3hp0_A          177 EWGLIDAFDAESD--VLLRKHLLRLRRLNKKGIAHYK  211 (267)
T ss_dssp             HHTSSSCBCSCTT--HHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HCCCcceecCCHH--HHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999998744  3577899999999999999886

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=3e-43  Score=285.93  Aligned_cols=173  Identities=32%  Similarity=0.502  Sum_probs=156.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++...+......   .+ . +..+ ++||||||+|||+|+||
T Consensus        35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~---~~-~-~~~~-~~~kPvIAav~G~a~Gg  107 (256)
T 3trr_A           35 VSQGLAAAADQLDSSADLSVAIITGA-GGNFCAGMDLKAFVSGEAVLSER---GL-G-FTNV-PPRKPIIAAVEGFALAG  107 (256)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEEG-GGCCCCCBCHHHHHHTCCCEETT---EE-T-TSSS-CCSSCEEEEECSBCCTH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEECC-CCceecCcCHHHhccccchhhhh---hh-h-HHHh-cCCCCEEEEECCeeeec
Confidence            57899999999999999999999998 58999999999886432111100   01 1 2234 89999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~  172 (256)
T 3trr_A          108 GTELVLSCDLVVAGRSAKFGIPEVKRGLVAG---------------AGGLLRLPNRIPYQVAMELALTGESFTAEDAAKY  172 (256)
T ss_dssp             HHHHHHTSSEEEEETTCEECCCGGGGTCCCC---------------SSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGG
T ss_pred             hhHHHHhCCEEEECCCCEEEehhhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       173 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  207 (256)
T 3trr_A          173 GFINRLVDDGQALDTALELAAKITANGPLAVAATK  207 (256)
T ss_dssp             TCCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCeeEecChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999876

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.3e-42  Score=280.67  Aligned_cols=169  Identities=25%  Similarity=0.450  Sum_probs=152.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++++++| ++|+|||||. |+.||+|.|++..     .....+.+.+++++.++.++||||||+|||+|+||
T Consensus        49 ~~~~L~~al~~~~~d-~vr~vVltg~-G~~FcaG~Dl~~~-----~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  121 (264)
T 3he2_A           49 LVEELTQAIRKAGDG-SARAIVLTGQ-GTAFCAGADLSGD-----AFAADYPDRLIELHKAMDASPMPVVGAINGPAIGA  121 (264)
T ss_dssp             HHHHHHHHHHCC----CCSEEEEEES-SSCSBCCBCCTTC-----TTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETH
T ss_pred             HHHHHHHHHHHHhhC-CceEEEEECC-CCCccCCcCCccc-----hhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcc
Confidence            578999999999988 9999999998 6899999999831     11123455677888999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               .|+++++++++|..++++++++|++++++||+++
T Consensus       122 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~  186 (264)
T 3he2_A          122 GLQLAMQCDLRVVAPDAFFQFPTSKYGLALD---------------NWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHT  186 (264)
T ss_dssp             HHHHHHHSSEEEECTTCEEECTHHHHTCCCC---------------HHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             hhHHHHhCCEEEEcCCCEEECcccccCcCCc---------------chHHHHHHHHhCHHHHHHHHHcCCCccHHHHHHC
Confidence            9999999999999999999999999999999               8999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|++    .+++.++|+++++.||.+++.+|
T Consensus       187 GLV~~v~~----~~~a~~~A~~la~~~p~a~~~~K  217 (264)
T 3he2_A          187 GMANRIGT----LADAQAWAAEIARLAPLAIQHAK  217 (264)
T ss_dssp             TSCSEECC----HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCeEEEec----HHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999986    46899999999999999999876

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=9.2e-42  Score=289.53  Aligned_cols=158  Identities=24%  Similarity=0.491  Sum_probs=142.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++|+.++.|+++|+|||||.|+++||+|.|++++...   .......+.....+++.++.++||||||+|||+|
T Consensus        34 m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  113 (363)
T 3bpt_A           34 MIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGIT  113 (363)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEEECSEE
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence            6789999999999999999999999866999999999987532   1111233445556788899999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|++++++|++|. +++++++||++++|+||
T Consensus       114 ~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~---------------~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA  177 (363)
T 3bpt_A          114 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPD---------------VGGGYFLPRLQGK-LGYFLALTGFRLKGRDV  177 (363)
T ss_dssp             ETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCC---------------TTHHHHHHHSSTT-HHHHHHHHCCCEETHHH
T ss_pred             ehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCC---------------chHHHHHHHhhHH-HHHHHHHcCCCCCHHHH
Confidence            9999999999999999999999999999999999               9999999999997 99999999999999999


Q ss_pred             HhcCccceecCCChHHH
Q 029329          158 MSLGLVNYYVPAGQAQL  174 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~  174 (195)
                      +++||||+|+|++++.+
T Consensus       178 ~~~GLv~~vv~~~~l~~  194 (363)
T 3bpt_A          178 YRAGIATHFVDSEKLAM  194 (363)
T ss_dssp             HHTTSCSEECCGGGHHH
T ss_pred             HHCCCcceecCHHHHHH
Confidence            99999999999988764

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=2.7e-41  Score=290.06  Aligned_cols=158  Identities=22%  Similarity=0.395  Sum_probs=145.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC-------ChhhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-------SPSEIHFYVNTLRSTFSFLEALPIPTIAVI   73 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav   73 (195)
                      |+.+|.++|+.++.|+++|+|||||.|+++||+|.|++++...       .......++...++++.++.++||||||+|
T Consensus        70 m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV  149 (407)
T 3ju1_A           70 MVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWG  149 (407)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTCSSCEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            6789999999999999999999999865899999999987542       123345566677788999999999999999


Q ss_pred             CCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCC
Q 029329           74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVS  153 (195)
Q Consensus        74 ~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~  153 (195)
                      ||+|+|||++|+++||+||++++++|++||+++|++|+               +|++++++|++| .++++++++|++++
T Consensus       150 nG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~---------------~G~t~~L~rl~g-~~A~~l~ltG~~i~  213 (407)
T 3ju1_A          150 DGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPD---------------VGGSYFLNRMPG-KMGLFLGLTAYHMN  213 (407)
T ss_dssp             CSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSC---------------TTHHHHTTTSST-THHHHHHHHCCCBC
T ss_pred             CCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCC---------------chHHHHHhhhhH-HHHHHHHHcCCcCc
Confidence            99999999999999999999999999999999999999               999999999999 89999999999999


Q ss_pred             HHHHHhcCccceecCCChHHH
Q 029329          154 GKDAMSLGLVNYYVPAGQAQL  174 (195)
Q Consensus       154 a~eA~~~Glvd~v~~~~~~~~  174 (195)
                      |+||+++||||+|+|++++.+
T Consensus       214 A~eA~~~GLv~~vv~~~~l~~  234 (407)
T 3ju1_A          214 AADACYVGLADHYLNRDDKEL  234 (407)
T ss_dssp             HHHHHHHTSCSEECCGGGHHH
T ss_pred             HHHHHHCCCccEEcCHHHHHH
Confidence            999999999999999988766

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=9e-41  Score=291.24  Aligned_cols=177  Identities=25%  Similarity=0.314  Sum_probs=162.9

Q ss_pred             CHHHHHHHHHHhhcC-CCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHH----HcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL----EALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~~d-~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~kp~Iaav~G   75 (195)
                      |+.+|.+++++++.| +++|+|||||..|+.||+|.|++++..........+.+.+++++.++    .++||||||+|||
T Consensus        59 ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG  138 (556)
T 2w3p_A           59 VDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNG  138 (556)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECS
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence            578999999999999 99999999993379999999999987654433444556677888888    9999999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCC--ceeeccccc-ccccCCCCCccchhhhhhcccCCccchhh--hhhcHHHHHHHHHcCC
Q 029329           76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGCSDRSLSHVILASDRAGGTQRLP--RLVGKSVAKDIIFTGR  150 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~--a~~~~~e~~-~G~~p~~~~~~~~~~~~~~~~~g~~~~l~--~~ig~~~a~~l~l~g~  150 (195)
                      +|+|||++|+++||+||++++  ++|++||++ +|++|+               +|++++++  +++|..++++++++|+
T Consensus       139 ~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg---------------~Ggt~rLp~~RlVG~~rA~eLlLTGr  203 (556)
T 2w3p_A          139 ACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPG---------------TGGLTRVTDKRKVRHDRADIFCTVVE  203 (556)
T ss_dssp             EEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCT---------------TTHHHHHHHTSCCCHHHHHHHTTCSS
T ss_pred             eechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCC---------------ccHHHHHHhhccCCHHHHHHHHHcCC
Confidence            999999999999999999999  999999999 999999               99999999  9999999999999999


Q ss_pred             CCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHH
Q 029329          151 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR  192 (195)
Q Consensus       151 ~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~  192 (195)
                      +++++||+++||||+|+|++++.+++.++|+++++.+|.+++
T Consensus       204 ~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~  245 (556)
T 2w3p_A          204 GVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAH  245 (556)
T ss_dssp             CEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred             CCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHh
Confidence            999999999999999999999999999999999999988765

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1.4e-39  Score=296.56  Aligned_cols=169  Identities=37%  Similarity=0.618  Sum_probs=155.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++++++|+++|+|||||. |+.||+|.|++++....+..      .+.+++.++.++||||||+|||+|+||
T Consensus        48 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aGaDl~~~~~~~~~~------~~~~~~~~i~~~~kPvIAai~G~a~GG  120 (742)
T 3zwc_A           48 VIREVRNGLQKAGSDHTVKAIVICGA-NGNFCAGADIHGFSAFTPGL------ALGSLVDEIQRYQKPVLAAIQGVALGG  120 (742)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCSSSCCSSCSCS------HHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEEECC-CCccccCcChHhhhccChhH------HHHHHHHHHHhCCCCEEEEECccchHH
Confidence            57899999999999999999999998 78999999999987654432      245678889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|++++|+|++|..++++++++|++++++||+++
T Consensus       121 G~elalacD~ria~~~a~fg~pev~lGl~Pg---------------~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~  185 (742)
T 3zwc_A          121 GLELALGCHYRIANAKARVGLPEVTLGILPG---------------ARGTQLLPRVVGVPVALDLITSGKYLSADEALRL  185 (742)
T ss_dssp             HHHHHHTSSEEEEETTCEEECGGGGGTCCCT---------------TTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHhcCEEEEcCCCEEECcccCcccCCC---------------ccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHH
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFR  192 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~  192 (195)
                      ||||+|+|++. .++|.++|+++++.++...+
T Consensus       186 GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~  216 (742)
T 3zwc_A          186 GILDAVVKSDP-VEEAIKFAQKIIDKPIEPRR  216 (742)
T ss_dssp             TSCSEEESSCH-HHHHHHHHHHHTTSCSGGGC
T ss_pred             CCccEecCchh-hHHHHHHHHHHhcCCchhhh
Confidence            99999999865 57899999999998875443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1.9e-38  Score=289.30  Aligned_cols=170  Identities=38%  Similarity=0.562  Sum_probs=156.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.++++++++|+++|+||||| +++.||+|.|++++...   +......+...+++++.++.++||||||+|||+|
T Consensus        36 ~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  114 (715)
T 1wdk_A           36 TLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIA  114 (715)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence            5789999999999999999999999 55699999999988542   2223444556778899999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|++++++|++|..++++++++|++++++||
T Consensus       115 ~GgG~elalacD~ria~~~a~fglpev~lGl~P~---------------~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA  179 (715)
T 1wdk_A          115 LGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPG---------------FGGTVRLPRLIGVDNAVEWIASGKENRAEDA  179 (715)
T ss_dssp             ETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHH
T ss_pred             eHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCC---------------ccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhc
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQK  186 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~  186 (195)
                      +++||||+|+|++++.+++.++|++++..
T Consensus       180 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~  208 (715)
T 1wdk_A          180 LKVSAVDAVVTADKLGAAALDLIKRAISG  208 (715)
T ss_dssp             HHTTSSSEEECGGGHHHHHHHHHHHHHTT
T ss_pred             HHCCCceEEeChHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999886

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=2e-39  Score=279.36  Aligned_cols=176  Identities=23%  Similarity=0.340  Sum_probs=149.2

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeC--------CCCceEeccCcchhhcCCh--hh--HHHHHHHHHHHHHHH------
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSS--------VPKVFCAGADLKERRQMSP--SE--IHFYVNTLRSTFSFL------   62 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~--------~~~~F~~G~Dl~~~~~~~~--~~--~~~~~~~~~~~~~~~------   62 (195)
                      |+.+|.++|+.++.|+++|+|||||.        |+++||+|.|++++.....  ..  .......++.++..+      
T Consensus       195 m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  274 (440)
T 2np9_A          195 QVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDR  274 (440)
T ss_dssp             HHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHHCEECCSCS
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHHHHHHHHHHHHHhhccc
Confidence            67899999999999999999999994        3489999999998864321  11  111122344454443      


Q ss_pred             ------HcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhh
Q 029329           63 ------EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRL  136 (195)
Q Consensus        63 ------~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~  136 (195)
                            .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+               +| +++++++
T Consensus       275 ~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~---------------~g-~~~L~rl  338 (440)
T 2np9_A          275 PGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG---------------AA-NLRLGRF  338 (440)
T ss_dssp             TTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCT---------------TH-HHHHHHH
T ss_pred             chhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcc---------------hH-HHHHHHH
Confidence                  4799999999999999999999999999999999999999999999998               76 6899999


Q ss_pred             hcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          137 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       137 ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +|..++++++++|++++++||+++||||+|+|++++.+++.+++++++.   .+++.+|
T Consensus       339 vG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~Av~~~K  394 (440)
T 2np9_A          339 AGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---DAVLANR  394 (440)
T ss_dssp             HHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---HHHHHHH
T ss_pred             hhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---HHHHHHH
Confidence            9999999999999999999999999999999999999999999888753   5555554

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=4.8e-38  Score=286.90  Aligned_cols=170  Identities=38%  Similarity=0.580  Sum_probs=148.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh---hHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS---EIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+++|.++++++++|+++|+||||| +++.||+|.|++++......   ....+...+++++.++.++||||||+|||+|
T Consensus        35 ~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  113 (725)
T 2wtb_A           35 VLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLA  113 (725)
T ss_dssp             HHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEEECSEE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEEECCcc
Confidence            5789999999999999999999999 55699999999987542210   0011234456667778899999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|++++++|++|..++++++++|++++++||
T Consensus       114 ~GgG~elalacD~ria~~~a~fglpev~lGl~P~---------------~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA  178 (725)
T 2wtb_A          114 LGGGLELAMACHARISAPAAQLGLPELQLGVIPG---------------FGGTQRLPRLVGLTKALEMILTSKPVKAEEG  178 (725)
T ss_dssp             ETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHH
T ss_pred             CcccHHHHHhCCEEEEcCCCEEeCchhccCCCCC---------------ccHHHHHHHhcCHHHHHHHHHcCCCCCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhc
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQK  186 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~  186 (195)
                      +++||||+|+|++++.+++.+++++++..
T Consensus       179 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~  207 (725)
T 2wtb_A          179 HSLGLIDAVVPPAELVTTARRWALDIVGR  207 (725)
T ss_dssp             HHHTSCSEECCTTTHHHHHHHHHHHHHTT
T ss_pred             HHCCccceEcChhHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999876

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.89  E-value=4.3e-23  Score=165.75  Aligned_cols=162  Identities=15%  Similarity=0.142  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHc-CCCcEEEEECCcccch
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA-LPIPTIAVIDGAALGG   80 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kp~Iaav~G~a~gg   80 (195)
                      +++|.++|+++++|+++|+|||+++     |.|.|+..            ...+++.+.++.. ++|||||+++|.|.|+
T Consensus        31 ~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~------------~~~i~~~l~~~~~~~~kPVia~v~g~a~~g   93 (240)
T 3rst_A           31 HRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYE------------SAEIHKKLEEIKKETKKPIYVSMGSMAASG   93 (240)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHH------------HHHHHHHHHHHHHHHCCCEEEEEEEEEETH
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHH------------HHHHHHHHHHHHHhCCCeEEEEECCeehHh
Confidence            4789999999999999999999986     56887754            2346667777777 8999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecc---------------------cccccccCCCCCc----cchhhhhhc-------ccCC
Q 029329           81 GLEMALACDLRICGEAALLGLP---------------------ETGLAIIPGCSDR----SLSHVILAS-------DRAG  128 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~---------------------e~~~G~~p~~~~~----~~~~~~~~~-------~~~g  128 (195)
                      |+.|+++||++++++++.|+.+                     +.+.|..+...++    +....+...       ++.-
T Consensus        94 G~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~  173 (240)
T 3rst_A           94 GYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFV  173 (240)
T ss_dssp             HHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999                     4445544431111    100000000       0000


Q ss_pred             ccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHH
Q 029329          129 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ  181 (195)
Q Consensus       129 ~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~  181 (195)
                      ......|.++....++ +++|+.|++++|+++||||++.+.+++.+.+.+++.
T Consensus       174 ~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~~~~  225 (240)
T 3rst_A          174 DVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHK  225 (240)
T ss_dssp             HHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHHHCG
T ss_pred             HHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHHhC
Confidence            1112234455555554 788999999999999999999988777666665543

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.88  E-value=8.2e-23  Score=182.88  Aligned_cols=162  Identities=19%  Similarity=0.229  Sum_probs=124.8

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      +.++|.++|++++.|+++|+|||+++     |.|.|+..            ...+++.+.++..++||||++|+|.|.||
T Consensus       323 ~~~~l~~~L~~a~~d~~vkaVVL~i~-----spGG~~~~------------~~~i~~~i~~l~~~~kPVia~v~g~Aasg  385 (593)
T 3bf0_A          323 GGDTTAAQIRDARLDPKVKAIVLRVN-----SPGGSVTA------------SEVIRAELAAARAAGKPVVVSMGGMAASG  385 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTEEEEEEEEE-----EEEECHHH------------HHHHHHHHHHHHHTTCCEEEEEEEEEETH
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEec-----CCCCCHHH------------HHHHHHHHHHHHhCCCCEEEEECCChHHH
Confidence            36789999999999999999999997     35777753            13456677788889999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccc------------cccccCCCCCccchhhhhhcccCCcc---------------chh
Q 029329           81 GLEMALACDLRICGEAALLGLPET------------GLAIIPGCSDRSLSHVILASDRAGGT---------------QRL  133 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~------------~~G~~p~~~~~~~~~~~~~~~~~g~~---------------~~l  133 (195)
                      |+.|+++||+++|++++.|+.+++            ++|+.|...... .+-+.... .+.+               ..+
T Consensus       386 G~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g-~~k~~~~~-~~~t~~~~~~l~~~l~~~~~~f  463 (593)
T 3bf0_A          386 GYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTS-PLADVSIT-RALPPEAQLMMQLSIENGYKRF  463 (593)
T ss_dssp             HHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSC-GGGCCCTT-SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecc-cccccCcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999875            578866311000 00000000 1111               456


Q ss_pred             hhhhcHHH-----HHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHH
Q 029329          134 PRLVGKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ  181 (195)
Q Consensus       134 ~~~ig~~~-----a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~  181 (195)
                      .+.++..+     +.+++++|+.|+++||+++||||++++.+++.+++.++++
T Consensus       464 ~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          464 ITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             HHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence            67777777     8899999999999999999999999988777777766543

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.83  E-value=3.3e-20  Score=147.64  Aligned_cols=150  Identities=13%  Similarity=0.214  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEE---CCccc
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI---DGAAL   78 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav---~G~a~   78 (195)
                      .+.|.++|+.++++ ++++|+|+.+     |.|.|+.               ....++..+..++||||+++   +|.|.
T Consensus        24 ~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~---------------~~~~i~~~i~~~~~PVia~v~p~~G~Aa   82 (230)
T 3viv_A           24 YDQFDRYITIAEQD-NAEAIIIELD-----TPGGRAD---------------AMMNIVQRIQQSKIPVIIYVYPPGASAA   82 (230)
T ss_dssp             HHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHH---------------HHHHHHHHHHTCSSCEEEEECSTTCEEE
T ss_pred             HHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHH---------------HHHHHHHHHHhCCCCEEEEEecCCCEEh
Confidence            46788999999864 6999999986     5566653               34567778889999999999   99999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccc-hhhhhhcccCCccchhhhhhcH--HHHHHHHHcCCCCCHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL-SHVILASDRAGGTQRLPRLVGK--SVAKDIIFTGRKVSGK  155 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~-~~~~~~~~~~g~~~~l~~~ig~--~~a~~l~l~g~~~~a~  155 (195)
                      |+|+.|+++||++++.++++|+.+++..+. |. .+.+. ...............+.+..|.  ..+++++.++..++++
T Consensus        83 saG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~-~G~~~~~~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~  160 (230)
T 3viv_A           83 SAGTYIALGSHLIAMAPGTSIGACRPILGY-SQ-NGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPE  160 (230)
T ss_dssp             THHHHHHHTSSEEEECTTCEEECCCEEEEE-CT-TSCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCEECHH
T ss_pred             HHHHHHHHhcCceeECCCCEEEeccceecC-CC-CCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCCeecHH
Confidence            999999999999999999999999987532 33 00000 0000000000001235667774  7899999999999999


Q ss_pred             HHHhcCccceecCC-ChHHH
Q 029329          156 DAMSLGLVNYYVPA-GQAQL  174 (195)
Q Consensus       156 eA~~~Glvd~v~~~-~~~~~  174 (195)
                      ||+++||||+|+++ +++.+
T Consensus       161 EAle~GliD~V~~~~~~ll~  180 (230)
T 3viv_A          161 EALKYGVIEVVARDINELLK  180 (230)
T ss_dssp             HHHHTTSCSEECSSHHHHHH
T ss_pred             HHHHcCCceEecCCHHHHHH
Confidence            99999999999976 33433

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.73  E-value=1.1e-17  Score=132.27  Aligned_cols=149  Identities=11%  Similarity=0.085  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      .+++.++|..+++|+.++.|+|.-+     |.|.++.               ....++..+..+++||++.++|.|.++|
T Consensus        59 a~~i~~~L~~l~~~~~~k~I~l~In-----SPGG~v~---------------ag~~I~~~i~~~~~pV~t~v~G~AaS~G  118 (218)
T 1y7o_A           59 ANSVIAQLLFLDAQDSTKDIYLYVN-----TPGGSVS---------------AGLAIVDTMNFIKADVQTIVMGMAASMG  118 (218)
T ss_dssp             HHHHHHHHHHHHHHCTTSCEEEEEE-----ECCBCHH---------------HHHHHHHHHHHSSSCEEEEEEEEEETHH
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCHH---------------HHHHHHHHHHhcCCCEEEEEccEeHHHH
Confidence            4678899999998877888777653     4444442               2335666777889999999999999999


Q ss_pred             HHHhhhCCE--EEEeCCceeecccccccccCC---CCCccchhhhhhcccCCccchhhhhhcH--HHHHHHHHcCCCCCH
Q 029329           82 LEMALACDL--RICGEAALLGLPETGLAIIPG---CSDRSLSHVILASDRAGGTQRLPRLVGK--SVAKDIIFTGRKVSG  154 (195)
Q Consensus        82 ~~la~~~D~--~va~~~a~~~~~e~~~G~~p~---~~~~~~~~~~~~~~~~g~~~~l~~~ig~--~~a~~l~l~g~~~~a  154 (195)
                      +.|+++||.  |++.+++.|++++..-|. +.   ..+......+....|......+.+..|.  ..+++++.+++.|++
T Consensus       119 ~~Ia~a~d~g~r~a~p~a~igih~p~~g~-~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta  197 (218)
T 1y7o_A          119 TVIASSGAKGKRFMLPNAEYMIHQPMGGT-GGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSA  197 (218)
T ss_dssp             HHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCH
T ss_pred             HHHHHcCCcCcEEEcCCcEEEEecccccc-cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEcH
Confidence            999999999  999999999999987333 21   0000000000000000012345556664  578889999999999


Q ss_pred             HHHHhcCccceecCCCh
Q 029329          155 KDAMSLGLVNYYVPAGQ  171 (195)
Q Consensus       155 ~eA~~~Glvd~v~~~~~  171 (195)
                      +||+++||||+|+++++
T Consensus       198 ~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          198 QETLEYGFIDEIMANNS  214 (218)
T ss_dssp             HHHHHHTSCSEECCCC-
T ss_pred             HHHHHCCCCcEEcCcCC
Confidence            99999999999998865

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.61  E-value=3.6e-15  Score=123.17  Aligned_cols=139  Identities=21%  Similarity=0.284  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHH---HcCCCcEEEEECCccc
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL---EALPIPTIAVIDGAAL   78 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~kp~Iaav~G~a~   78 (195)
                      .+.+.++++.+.++ ++.+|++++++      |.|+.+...    ..    ..+.+++..+   ...++|+|++|+|+|.
T Consensus       139 ~~Ki~r~~e~A~~~-~~PvI~l~~sG------Garlqeg~~----~l----~~~~~i~~al~~~~~~~vP~IavV~G~~~  203 (304)
T 2f9y_B          139 GARFVRAVEQALED-NCPLICFSASG------GARMQEALM----SL----MQMAKTSAALAKMQERGLPYISVLTDPTM  203 (304)
T ss_dssp             HHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHH----HH----HHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhC-CCCEEEEECCC------CcCHHHHHH----HH----HHHHHHHHHHHHHhcCCCCEEEEEECCCc
Confidence            46788999999988 89999999863      778855321    11    2334444444   4569999999999999


Q ss_pred             chh-HHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           79 GGG-LEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        79 ggG-~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      ||| +.++++||++++.++++|++.    |  |                    ..+.+.+|..      ++++..+++++
T Consensus       204 GGg~a~~a~~~D~via~~~A~i~v~----G--p--------------------~~i~~~ig~~------l~~~~~~Ae~~  251 (304)
T 2f9y_B          204 GGVSASFAMLGDLNIAEPKALIGFA----G--P--------------------RVIEQTVREK------LPPGFQRSEFL  251 (304)
T ss_dssp             HHHHTTGGGCCSEEEECTTCBEESS----C--H--------------------HHHHHHHTSC------CCTTTTBHHHH
T ss_pred             cHHHHHHHhcCCEEEEeCCcEEEee----c--H--------------------HHHHHHhCcc------CCcccCCHHHH
Confidence            999 788999999999999999886    1  2                    2244555542      46788899999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKV  187 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~  187 (195)
                      .++|+||.|++++++.+.+.++++.+...+
T Consensus       252 ~~~Glvd~Vv~~~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          252 IEKGAIDMIVRRPEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             GGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred             HhcCCccEEeCcHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999998653

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.56  E-value=2e-14  Score=119.80  Aligned_cols=152  Identities=11%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +...+.++.+++..- -+|.+.-. ++++ .|.+..         .......+.+.+..+..+++|+|++|+|.|.|||+
T Consensus       147 ~Ka~r~~~~A~~~~~-PlI~lvdt-~Ga~-~g~~ae---------~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa  214 (327)
T 2f9i_A          147 RKALRLMKQAEKFNR-PIFTFIDT-KGAY-PGKAAE---------ERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGA  214 (327)
T ss_dssp             HHHHHHHHHHHHTTC-CEEEEEEE-SCSC-CCHHHH---------HTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHH
T ss_pred             HHHHHHHHHHhhcCC-CEEEEEeC-CCCC-cchhhh---------hhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHH
Confidence            456677777776643 44444332 2222 232211         11234566777888999999999999999999999


Q ss_pred             HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCc
Q 029329           83 EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGL  162 (195)
Q Consensus        83 ~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Gl  162 (195)
                      .++++||+++|.++++|++      +.|.               +++...+.+..+...+.++    ..+++++|+++|+
T Consensus       215 ~~~~~~D~via~~~A~~~v------~~pe---------------g~a~il~~~~~~a~~A~e~----~~itA~~a~~~Gl  269 (327)
T 2f9i_A          215 LGIGIANKVLMLENSTYSV------ISPE---------------GAAALLWKDSNLAKIAAET----MKITAHDIKQLGI  269 (327)
T ss_dssp             HTTCCCSEEEEETTCBCBS------SCHH---------------HHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTS
T ss_pred             HHHHCCCEEEEcCCceEee------cCch---------------HHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCC
Confidence            9999999999999999885      2343               3334444444444666666    7899999999999


Q ss_pred             cceecCCC-------------hHHHHHHHHHHHHhhcCHHHH
Q 029329          163 VNYYVPAG-------------QAQLKALEIAQEINQKVQSVF  191 (195)
Q Consensus       163 vd~v~~~~-------------~~~~~a~~~a~~~~~~~~~~~  191 (195)
                      ||+|+|..             ++.+...+..+.+...++..+
T Consensus       270 Vd~VV~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~l  311 (327)
T 2f9i_A          270 IDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEI  311 (327)
T ss_dssp             SSEEECCCTTCGGGCHHHHHHHHHHHHHHHHHTTTTCCHHHH
T ss_pred             ceEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999843             455555555566666666644

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.56  E-value=1.6e-14  Score=120.87  Aligned_cols=152  Identities=11%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +...+.++.+++.. +-+|.+.-. ++++ .|....         .......+.+.+..+..+++|+|++|+|.|.|||+
T Consensus       161 ~Ka~r~~~~A~~~~-lPlI~lvDt-~Ga~-~g~~aE---------~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa  228 (339)
T 2f9y_A          161 RKALRLMQMAERFK-MPIITFIDT-PGAY-PGVGAE---------ERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGA  228 (339)
T ss_dssp             HHHHHHHHHHHHTT-CCEEEEEEE-SCSC-CSHHHH---------HTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHH
T ss_pred             HHHHHHHHHHhhcC-CCEEEEEeC-CCCc-cchHHH---------HHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHH
Confidence            45667777777664 344444332 2222 232211         11234566778888999999999999999999999


Q ss_pred             HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCc
Q 029329           83 EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGL  162 (195)
Q Consensus        83 ~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Gl  162 (195)
                      .++++||+++|.++++|++      +.|.               +++...+.+..+...+.++    ..+++++|+++|+
T Consensus       229 ~~~~~~D~via~p~A~~~v------~~Pe---------------g~asil~~~~~~~~~Aae~----~~itA~~a~~~Gl  283 (339)
T 2f9y_A          229 LAIGVGDKVNMLQYSTYSV------ISPE---------------GCASILWKSADKAPLAAEA----MGIIRPRLKELKL  283 (339)
T ss_dssp             HTTCCCSEEEECTTCEEES------SCHH---------------HHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTS
T ss_pred             HHHhccCeeeecCCCEEEe------eccc---------------hHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCC
Confidence            9999999999999999986      3454               5555556666666777777    6799999999999


Q ss_pred             cceecCCC-------------hHHHHHHHHHHHHhhcCHHHH
Q 029329          163 VNYYVPAG-------------QAQLKALEIAQEINQKVQSVF  191 (195)
Q Consensus       163 vd~v~~~~-------------~~~~~a~~~a~~~~~~~~~~~  191 (195)
                      ||+|+|..             ++.+...+..+.+...++..+
T Consensus       284 Vd~VV~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~l  325 (339)
T 2f9y_A          284 IDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVLSTEDL  325 (339)
T ss_dssp             CSCCCCCSTTCGGGCHHHHHHHHHHHHHHHTTTTTTSCHHHH
T ss_pred             eeEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            99999842             444444455555556666554

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.46  E-value=2e-13  Score=107.10  Aligned_cols=153  Identities=10%  Similarity=0.050  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchh
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG   81 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG   81 (195)
                      .+.+.+.|..++.++.++.|+|.=+     |.|.++               .....++..+...++||++.+.|.|.++|
T Consensus        41 a~~i~~~L~~~~~~~~~k~I~l~In-----SPGG~v---------------~a~~~I~~~i~~~~~pV~~~v~g~AaS~g  100 (208)
T 2cby_A           41 ANRLCAQILLLAAEDASKDISLYIN-----SPGGSI---------------SAGMAIYDTMVLAPCDIATYAMGMAASMG  100 (208)
T ss_dssp             HHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHCSSCEEEEEEEEEETHH
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEECcEeHHHH
Confidence            3568888988887777777766544     233333               22445667777889999999999999999


Q ss_pred             HHHhhhCCE--EEEeCCceeecccccccccCCCCCccch--hhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHH
Q 029329           82 LEMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLS--HVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        82 ~~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~--~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~  155 (195)
                      +.++++||.  |++.+++.+++.+..-|......+....  .++...+  .....+.+..|  .....+.+..+..|+++
T Consensus       101 ~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~--~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~  178 (208)
T 2cby_A          101 EFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKK--EMFRLNAEFTGQPIERIEADSDRDRWFTAA  178 (208)
T ss_dssp             HHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHTTCEEEHH
T ss_pred             HHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHH--HHHHHHHHHhCcCHHHHHHHHhCCcEEcHH
Confidence            999999998  9999999999887653321110000000  0000000  00111223333  44566778899999999


Q ss_pred             HHHhcCccceecCC-ChHHHHH
Q 029329          156 DAMSLGLVNYYVPA-GQAQLKA  176 (195)
Q Consensus       156 eA~~~Glvd~v~~~-~~~~~~a  176 (195)
                      ||+++||||++.+. +++.+..
T Consensus       179 eA~e~GLvD~i~~~~~~ll~~~  200 (208)
T 2cby_A          179 EALEYGFVDHIITRAHVNGEAQ  200 (208)
T ss_dssp             HHHHHTSCSEECSCC-------
T ss_pred             HHHHcCCCcEecCchHHHHHHH
Confidence            99999999999975 4444443

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=99.23  E-value=5.4e-11  Score=93.62  Aligned_cols=147  Identities=7%  Similarity=-0.035  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.+.|..++.++. +.|+|.=+     |.|.++               .....++..+...++|+++.+.|.|.++|+
T Consensus        54 ~~i~~~L~~l~~~~~-k~I~l~IN-----SPGGsv---------------~a~~~I~~~i~~~~~pV~t~v~g~AAS~g~  112 (215)
T 2f6i_A           54 DELISQLLYLDNINH-NDIKIYIN-----SPGGSI---------------NEGLAILDIFNYIKSDIQTISFGLVASMAS  112 (215)
T ss_dssp             HHHHHHHHHHHHHCC-SCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSSSCEEEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHhCCC-CcEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEEeeEhHhHHH
Confidence            567788888876555 66666544     223333               234456667778899999999999999999


Q ss_pred             HHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhh--hcHHHHHHHHHcCCCCCHHHHH
Q 029329           83 EMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRL--VGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        83 ~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~--ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      .++++||.  |++.|++.+.+.....|......+......++...+......+.+.  .......+++-.+..++++||+
T Consensus       113 ~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~  192 (215)
T 2f6i_A          113 VILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAK  192 (215)
T ss_dssp             HHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHH
T ss_pred             HHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHH
Confidence            99999999  9999999998877643321110000000000000000000011112  2345555665555667999999


Q ss_pred             hcCccceecCCC
Q 029329          159 SLGLVNYYVPAG  170 (195)
Q Consensus       159 ~~Glvd~v~~~~  170 (195)
                      ++||||+|.++.
T Consensus       193 e~GLiD~I~~~~  204 (215)
T 2f6i_A          193 QYGIIDEVIETK  204 (215)
T ss_dssp             HHTSCSEECCCS
T ss_pred             HCCCCCEecCCc
Confidence            999999998753

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=99.22  E-value=8.5e-12  Score=96.67  Aligned_cols=145  Identities=10%  Similarity=0.067  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.+.|..++.++..+.|+|.=+     |.|.++               .....++..+...++|+++.+.|.|.++|+
T Consensus        41 ~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v---------------~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~  100 (193)
T 1yg6_A           41 NLIVAQMLFLEAENPEKDIYLYIN-----SPGGVI---------------TAGMSIYDTMQFIKPDVSTICMGQAASMGA  100 (193)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHH
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCH---------------HHHHHHHHHHHhcCCCEEEEEeeeHHHHHH
Confidence            567888888887766787777654     334433               234456667777899999999999999999


Q ss_pred             HHhhhCCE--EEEeCCceeecccccccccCCCCCcc--chhhhhhcccCCccchhhhhh--cHHHHHHHHHcCCCCCHHH
Q 029329           83 EMALACDL--RICGEAALLGLPETGLAIIPGCSDRS--LSHVILASDRAGGTQRLPRLV--GKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        83 ~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~--~~~~~~~~~~~g~~~~l~~~i--g~~~a~~l~l~g~~~~a~e  156 (195)
                      .++++||.  |++.|++.+++.....|......+..  ...++...+  .....+.+..  ......+++-.+..++++|
T Consensus       101 ~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~--~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~e  178 (193)
T 1yg6_A          101 FLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKG--RMNELMALHTGQSLEQIERDTERDRFLSAPE  178 (193)
T ss_dssp             HHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHTSSCEEEEHHH
T ss_pred             HHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCHHHHHHHhcCCeEEcHHH
Confidence            99999999  99999999988765533211100000  000000000  0011122222  2445555554566679999


Q ss_pred             HHhcCccceecCC
Q 029329          157 AMSLGLVNYYVPA  169 (195)
Q Consensus       157 A~~~Glvd~v~~~  169 (195)
                      |+++||||++.++
T Consensus       179 A~~~GliD~i~~~  191 (193)
T 1yg6_A          179 AVEYGLVDSILTH  191 (193)
T ss_dssp             HHHHTSSSEECCC
T ss_pred             HHHcCCCCEecCC
Confidence            9999999999865

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=99.21  E-value=8.3e-11  Score=91.73  Aligned_cols=148  Identities=9%  Similarity=0.050  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+...|..++.++..+.|+|.=+     |.|.++               .....++..+...++||++.+.|.|.++|.
T Consensus        42 ~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v---------------~~~~~I~~~i~~~~~~V~t~~~G~AaSag~  101 (203)
T 3qwd_A           42 NSIVSQLLFLQAQDSEKDIYLYIN-----SPGGSV---------------TAGFAIYDTIQHIKPDVQTICIGMAASMGS  101 (203)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHH
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEe-----CCCCCH---------------HHHHHHHHHHHHhcCCcEEEEeeeehhHHH
Confidence            567788888887766676666544     233333               234456667778899999999999999999


Q ss_pred             HHhhhCC--EEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHHHH
Q 029329           83 EMALACD--LRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        83 ~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~eA~  158 (195)
                      .++++||  .|++.+++.|.+....-|......+......++...|......+.+..|  .....+++-....++++||+
T Consensus       102 ~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~  181 (203)
T 3qwd_A          102 FLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK  181 (203)
T ss_dssp             HHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHH
T ss_pred             HHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCceecHHHHH
Confidence            9999999  6999999999988765332111000000000000000000112233333  45566666667789999999


Q ss_pred             hcCccceecCCC
Q 029329          159 SLGLVNYYVPAG  170 (195)
Q Consensus       159 ~~Glvd~v~~~~  170 (195)
                      ++||||+|.++.
T Consensus       182 e~GliD~I~~~~  193 (203)
T 3qwd_A          182 EYGLIDEVMVPE  193 (203)
T ss_dssp             HHTSCSEECCCC
T ss_pred             HcCCcCEecCCc
Confidence            999999999764

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=99.11  E-value=2.5e-09  Score=93.77  Aligned_cols=176  Identities=16%  Similarity=0.154  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHhh-cCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC-Ccccc
Q 029329            2 LRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAALG   79 (195)
Q Consensus         2 ~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~-G~a~g   79 (195)
                      -.+|.++|-.+. +++++...+++..|...-.-..|---..+.+..-..+....+++.+.++.-...-+++.|+ |.|+.
T Consensus       310 ~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~  389 (556)
T 2w3p_A          310 AREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFA  389 (556)
T ss_dssp             HHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEE
T ss_pred             hhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhhhHHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchH
Confidence            467766666665 7789999998887432111112211112334555667777888999999999999999997 99988


Q ss_pred             hh-HHHhhhCCEEEEeC-------CceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh-cHHHHH--HHHHc
Q 029329           80 GG-LEMALACDLRICGE-------AALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV-GKSVAK--DIIFT  148 (195)
Q Consensus        80 gG-~~la~~~D~~va~~-------~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i-g~~~a~--~l~l~  148 (195)
                      |- ++|+++||..++-+       .+.+.+.+.++|.+|.               .-+..++.++. +..-..  --...
T Consensus       390 g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  454 (556)
T 2w3p_A          390 GTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPM---------------VTHQSRLARRFYEETEPLDAVRSRI  454 (556)
T ss_dssp             GGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTTSCC---------------TTSSCHHHHHTTTCHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCcccC---------------CCchhHHHHHhcCCcchHHHHHHHh
Confidence            76 69999999999953       2689999999999997               66667776654 322222  22345


Q ss_pred             CCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHH
Q 029329          149 GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR  192 (195)
Q Consensus       149 g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~  192 (195)
                      |+++++++|.++|||+...++=+..++.+-..++-++.+|+++-
T Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (556)
T 2w3p_A          455 GQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALT  498 (556)
T ss_dssp             TSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcchhc
Confidence            99999999999999999988888999999999999999999874

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=99.09  E-value=2.1e-10  Score=93.20  Aligned_cols=148  Identities=9%  Similarity=0.029  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+...|..++.++..+.|+|.=+     |.|.++               .....++..+...++||++.+.|.|.++|+
T Consensus        97 ~~iiaqL~~l~~ed~~k~I~L~IN-----SPGGsV---------------~ag~aIyd~I~~~k~pV~t~v~G~AASaG~  156 (277)
T 1tg6_A           97 SLVIAQLLFLQSESNKKPIHMYIN-----SPGGVV---------------TAGLAIYDTMQYILNPICTWCVGQAASMGS  156 (277)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSCSCEEEEEEEEEETHHH
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEEccEeHHHHH
Confidence            467778888776555677776654     233433               233456666777899999999999999999


Q ss_pred             HHhhhCCE--EEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHHHH
Q 029329           83 EMALACDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        83 ~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~eA~  158 (195)
                      .++++||.  |++.+++.+++....-|......+......+....+......+.+..|  .....+++-.+..++++||+
T Consensus       157 ~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAl  236 (277)
T 1tg6_A          157 LLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQ  236 (277)
T ss_dssp             HHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHH
T ss_pred             HHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHH
Confidence            99999999  999999999887654332111000000000000000000011122222  34455555556678999999


Q ss_pred             hcCccceecCCC
Q 029329          159 SLGLVNYYVPAG  170 (195)
Q Consensus       159 ~~Glvd~v~~~~  170 (195)
                      ++||||+|.+..
T Consensus       237 e~GLID~I~~~~  248 (277)
T 1tg6_A          237 EFGILDKVLVHP  248 (277)
T ss_dssp             HHTSCSEECSSC
T ss_pred             HCCCCCEecCcc
Confidence            999999999763

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=99.08  E-value=9.7e-11  Score=91.19  Aligned_cols=145  Identities=9%  Similarity=0.039  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+...|..++.++..+.|+|.=+     |.|.++               .....++..+...++|+++.+.|.|.++|.
T Consensus        45 ~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v---------------~~~~~I~~~i~~~~~~v~t~~~G~AaS~g~  104 (201)
T 3p2l_A           45 NLVIAQLLFLESEDPDKDIYFYIN-----SPGGMV---------------TAGMGVYDTMQFIKPDVSTICIGLAASMGS  104 (201)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHH
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCH---------------HHHHHHHHHHHHhCCCeEEEEcCEehhHHH
Confidence            567788888887666676666544     334433               234456677778899999999999999999


Q ss_pred             HHhhhCCE--EEEeCCceeecccccccccCCCCCcc--chhhhhhcccCCccchhhhhhc--HHHHHHHHHcCCCCCHHH
Q 029329           83 EMALACDL--RICGEAALLGLPETGLAIIPGCSDRS--LSHVILASDRAGGTQRLPRLVG--KSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        83 ~la~~~D~--~va~~~a~~~~~e~~~G~~p~~~~~~--~~~~~~~~~~~g~~~~l~~~ig--~~~a~~l~l~g~~~~a~e  156 (195)
                      .+++++|.  |++.|++.+.++...-|......+..  ...+....+  .....+.+..|  .....+++-....++++|
T Consensus       105 ~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~--~~~~~ya~~tG~~~e~i~~~~~~~~~lta~E  182 (201)
T 3p2l_A          105 LLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKD--RLNKVLAHHTGQDLETIVKDTDRDNFMMADE  182 (201)
T ss_dssp             HHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHTSSCEEEEHHH
T ss_pred             HHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHH--HHHHHHHHHhCcCHHHHHHHhhcCeeecHHH
Confidence            99999998  99999999988776533211100000  000000000  01111223333  444555555455679999


Q ss_pred             HHhcCccceecCC
Q 029329          157 AMSLGLVNYYVPA  169 (195)
Q Consensus       157 A~~~Glvd~v~~~  169 (195)
                      |+++||||+|.++
T Consensus       183 A~e~GliD~I~~~  195 (201)
T 3p2l_A          183 AKAYGLIDHVIES  195 (201)
T ss_dssp             HHHHTSCSEECCC
T ss_pred             HHHcCCccEecCC
Confidence            9999999999876

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.05  E-value=4.3e-10  Score=100.60  Aligned_cols=86  Identities=10%  Similarity=0.079  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCceEec-cCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAG-ADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      .+++.+.|+.+++|+.++.|+|.-+     |.| .++..            ...+++.+..+....|||||.+++ +..+
T Consensus        72 ~~~i~~~L~~a~~d~~ik~I~L~in-----spGgG~v~~------------~~~I~~~i~~~k~~gkpvva~~~~-aas~  133 (593)
T 3bf0_A           72 LFDIVNTIRQAKDDRNITGIVMDLK-----NFAGGDQPS------------MQYIGKALKEFRDSGKPVYAVGEN-YSQG  133 (593)
T ss_dssp             HHHHHHHHHHHHHCTTCCCEEEECT-----EEEECCHHH------------HHHHHHHHHHHHHTTCCEEEEESC-EEHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEEEeC-----CCCCCcHHH------------HHHHHHHHHHHHhcCCeEEEEEcc-chhH
Confidence            4578899999999999999999886     334 54432            356777777777778999999876 6788


Q ss_pred             hHHHhhhCCEEEEeCCceeeccccc
Q 029329           81 GLEMALACDLRICGEAALLGLPETG  105 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~  105 (195)
                      |+.|+++||.+++.|++.++...+.
T Consensus       134 ~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          134 QYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             HHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             HHHHHHhCCEEEECCCceEEEeccc
Confidence            9999999999999999988776553

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.79  E-value=2.3e-08  Score=77.78  Aligned_cols=117  Identities=9%  Similarity=0.115  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeecccccccc-cCCCCCccchhhhhhcccCCcc
Q 029329           54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAI-IPGCSDRSLSHVILASDRAGGT  130 (195)
Q Consensus        54 ~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G~-~p~~~~~~~~~~~~~~~~~g~~  130 (195)
                      ....++..+...+.||...+-|.|.+.|..|++++|  .|++.|++++-+....-|. ...-.+-.....++...|....
T Consensus        84 aglaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~  163 (205)
T 4gm2_A           84 DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVI  163 (205)
T ss_dssp             HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHH
Confidence            345677777788999999999999999999999999  5999999999888776554 1111110000011111111112


Q ss_pred             chhhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCCC
Q 029329          131 QRLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG  170 (195)
Q Consensus       131 ~~l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~  170 (195)
                      ..+.+..|  .....+.+-....++|+||+++||||+|++.|
T Consensus       164 ~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          164 EIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence            22333333  34455666667779999999999999998753

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=98.32  E-value=1.4e-06  Score=77.60  Aligned_cols=102  Identities=20%  Similarity=0.147  Sum_probs=73.5

Q ss_pred             HHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCC-ceeeccccc--ccccCCCCCccchhhhhhcccCCccchh
Q 029329           57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETG--LAIIPGCSDRSLSHVILASDRAGGTQRL  133 (195)
Q Consensus        57 ~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~~e~~--~G~~p~~~~~~~~~~~~~~~~~g~~~~l  133 (195)
                      ....++.....|+|+++.|.|.|||... ..||++|+.++ +.+++.-.+  -++.|-                      
T Consensus       172 ~~~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~----------------------  228 (587)
T 1pix_A          172 FRNAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPK----------------------  228 (587)
T ss_dssp             HHHHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSS----------------------
T ss_pred             HHHHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccc----------------------
Confidence            3445667789999999999999999999 99999988875 887773321  111111                      


Q ss_pred             hhhhcHHHHHHHH-HcCCCCCHHH-----HH--hcCccceecCCChHHHHHHHHHHHHhh
Q 029329          134 PRLVGKSVAKDII-FTGRKVSGKD-----AM--SLGLVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       134 ~~~ig~~~a~~l~-l~g~~~~a~e-----A~--~~Glvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                       -.++.+++.+++ .+|+.+++++     .+  +.|++|.++++++   ++.+.++++.+
T Consensus       229 -~~~d~~~A~el~~~tge~v~~e~lgga~~h~~~~GvvD~vv~~e~---~a~~~~r~~ls  284 (587)
T 1pix_A          229 -GHVDLEYANEIADMVDRTGKTEPPGAVDIHYTETGFMREVYASEE---GVLEGIKKYVG  284 (587)
T ss_dssp             -SSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTTTSCCSCEEESSHH---HHHHHHHHHHH
T ss_pred             -cccchhHHHHHHHHhCCccChhhcccHHHHHhhcCceeEecCCHH---HHHHHHHHHHH
Confidence             125789999999 8898887654     33  6899999999865   44444444444

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.86  E-value=0.00034  Score=61.51  Aligned_cols=130  Identities=17%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHc--CCCcEEEEECCcccch
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA--LPIPTIAVIDGAALGG   80 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~kp~Iaav~G~a~gg   80 (195)
                      +.+.++++.+.+. .+-+|.+.-+      .|..+.+    .-....    .+-+++.++..  -..|+|+.+.|+|.||
T Consensus       119 ~Ki~ra~e~A~~~-~lP~I~l~dS------gGaRmqE----g~~~l~----~~~~i~~~~~~~s~~iP~Isvv~G~~~GG  183 (530)
T 3iav_A          119 QKIVKVMDFALKT-GCPVVGINDS------GGARIQE----GVASLG----AYGEIFRRNTHASGVIPQISLVVGPCAGG  183 (530)
T ss_dssp             HHHHHHHHHHHHH-TCCEEEEECC------CSBCGGG----THHHHH----HHHHHHHHHHHTTTTSCEEEEECSEEEGG
T ss_pred             HHHHHHHHHHHHc-CCCEEEEEcC------CCcchhh----hhhhHH----HHHHHHHHHHHHcCCCCEEEEEecCcchH
Confidence            4566677777665 4555655543      2333322    111111    22233333322  2489999999999999


Q ss_pred             hHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH--
Q 029329           81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA--  157 (195)
Q Consensus        81 G~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA--  157 (195)
                      +......||++|+.++ +.+++.-      |.                        ++     +  ..+|+.+++++.  
T Consensus       184 ~a~~~al~D~~im~~~~a~i~~aG------P~------------------------vi-----~--~~~ge~v~~e~LGG  226 (530)
T 3iav_A          184 AVYSPAITDFTVMVDQTSHMFITG------PD------------------------VI-----K--TVTGEDVGFEELGG  226 (530)
T ss_dssp             GGHHHHHSSEEEEETTTCEEESSC------HH------------------------HH-----H--HHHCCCCCHHHHHB
T ss_pred             HHHHHHhCCEEEEecCCcEEEecC------HH------------------------HH-----H--HHhCCcCChhhcch
Confidence            9988889999999876 7776531      11                        11     1  156788888765  


Q ss_pred             -----HhcCccceecCCC-hHHHHHHHHHHHHh
Q 029329          158 -----MSLGLVNYYVPAG-QAQLKALEIAQEIN  184 (195)
Q Consensus       158 -----~~~Glvd~v~~~~-~~~~~a~~~a~~~~  184 (195)
                           ...|++|.++++| +..+.++++..-+-
T Consensus       227 a~~h~~~sGv~d~va~de~~a~~~~r~~ls~lp  259 (530)
T 3iav_A          227 ARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLP  259 (530)
T ss_dssp             HHHHHHTSCCCSEEESSHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhccCceeEEecChHHHHHHHHHHHHhcc
Confidence                 5899999999885 35566666665553

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.85  E-value=0.00037  Score=61.27  Aligned_cols=129  Identities=17%  Similarity=0.258  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.++++.+.+. .+-+|.+.-+      .|..+.+    .-.....+.+.+.... ++ .-..|+|+++.|+|.||+.
T Consensus       127 ~Ki~ra~e~A~~~-~lPvI~l~dS------GGARmqe----g~~sl~~~~~i~~~~~-~~-s~~iP~Isvv~Gp~~GG~a  193 (531)
T 3n6r_B          127 KKICKIMDMAMQN-GAPVIGINDS------GGARIQE----GVDSLAGYGEVFQRNI-MA-SGVVPQISMIMGPCAGGAV  193 (531)
T ss_dssp             HHHHHHHHHHHHH-TCCEEEEECC------CCBCGGG----THHHHHHHHHHHHHHH-HT-TTTSCEEEEECSCCBGGGG
T ss_pred             HHHHHHHHHHHHc-CCCEEEEeCC------CccccCc----ccchhhhHHHHHHHHH-HH-hCCCCEEEEEeCCcchHHH
Confidence            4566677777655 3455555443      2444432    1111112222222221 11 2458999999999999998


Q ss_pred             HHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH----
Q 029329           83 EMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA----  157 (195)
Q Consensus        83 ~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA----  157 (195)
                      .....||++|+.++ +.+++.-      |                        +++     +  ..+|+.+++++.    
T Consensus       194 ~s~a~~D~vi~~~~~a~i~~aG------P------------------------~vI-----~--~~~ge~v~~E~LGGa~  236 (531)
T 3n6r_B          194 YSPAMTDFIFMVKDSSYMFVTG------P------------------------DVV-----K--TVTNEQVSAEELGGAT  236 (531)
T ss_dssp             HHHHHSSEEEEETTTCBCBSSC------H------------------------HHH-----H--HHHCCCCCHHHHHBHH
T ss_pred             HHhhhCCEEEEecCCceEeecC------H------------------------HHH-----H--HHhCCccChhhcchHH
Confidence            88888999999986 6654421      1                        111     1  156889999988    


Q ss_pred             ---HhcCccceecCCCh-HHHHHHHHHH
Q 029329          158 ---MSLGLVNYYVPAGQ-AQLKALEIAQ  181 (195)
Q Consensus       158 ---~~~Glvd~v~~~~~-~~~~a~~~a~  181 (195)
                         .+.|++|.++++|+ ..+.++++..
T Consensus       237 ~h~~~sG~~d~v~~~e~~a~~~~r~lls  264 (531)
T 3n6r_B          237 THTRKSSVADAAFENDVEALAEVRRLVD  264 (531)
T ss_dssp             HHHHTTSCCSEEESSHHHHHHHHHHHHT
T ss_pred             HHhhccCcceEEeCCHHHHHHHHHHHHH
Confidence               89999999998853 3444444443

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.85  E-value=0.00049  Score=60.48  Aligned_cols=131  Identities=18%  Similarity=0.249  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.++++.+.+. .+-+|.+.-      |.|..+.+-    ......+.+.+.... ++ .-..|.|+.+.|+|.||+.
T Consensus       117 ~Ki~ra~e~A~~~-~lP~I~l~~------SGGARmqeg----~~sl~~~~~i~~~~~-~~-s~~iP~Isvv~gp~~GG~a  183 (523)
T 1on3_A          117 TKVVETMEQALLT-GTPFLFFYD------SGGARIQEG----IDSLSGYGKMFFANV-KL-SGVVPQIAIIAGPCAGGAS  183 (523)
T ss_dssp             HHHHHHHHHHHHH-TCCEEEEEE------ECSBCGGGT----HHHHHHHHHHHHHHH-HH-TTTSCEEEEEEEEEESGGG
T ss_pred             HHHHHHHHHHHHc-CCCEEEEEc------CCCCChhhH----HHHHHHHHHHHHHHH-Hh-cCCCCEEEEEcCCCchHHH
Confidence            4566777777665 455565554      335555331    112222233233322 22 3459999999999999999


Q ss_pred             HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCH-----HHH
Q 029329           83 EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSG-----KDA  157 (195)
Q Consensus        83 ~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a-----~eA  157 (195)
                      .....||++|+.+++.+++.-.                              +++-.       .+|+.++.     .|.
T Consensus       184 ~s~~l~D~ii~~~~a~i~~aGP------------------------------~vI~~-------~~ge~~~~e~lggae~  226 (523)
T 1on3_A          184 YSPALTDFIIMTKKAHMFITGP------------------------------QVIKS-------VTGEDVTADELGGAEA  226 (523)
T ss_dssp             HHHHHSSEEEEETTCEEESSCH------------------------------HHHHH-------HHCCCCCHHHHHSHHH
T ss_pred             HHHhhCCeEEEeCCCEEEecCH------------------------------HHHHH-------HhCCcCChHhcccHHH
Confidence            9999999999999987766421                              11110       34666664     333


Q ss_pred             H--hcCccceecCCC-hHHHHHHHHHHHH
Q 029329          158 M--SLGLVNYYVPAG-QAQLKALEIAQEI  183 (195)
Q Consensus       158 ~--~~Glvd~v~~~~-~~~~~a~~~a~~~  183 (195)
                      +  +.|++|.+++++ +..+.+.++..-+
T Consensus       227 h~~~~G~vd~vv~d~~~~~~~~r~lL~~l  255 (523)
T 1on3_A          227 HMAISGNIHFVAEDDDAAELIAKKLLSFL  255 (523)
T ss_dssp             HHHTTCCCSEEESSHHHHHHHHHHHHHTS
T ss_pred             HhhccCceEEEeCCHHHHHHHHHHHHHhc
Confidence            3  689999999974 3555555554444

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.83  E-value=0.0011  Score=54.02  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHH--HHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF--YVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      +.+.++++.+.+. .+-+|.+.-+ ++     .-+.+       ....  ....+...+.++.....|.|+.+.|+|.||
T Consensus       143 ~K~~r~ie~A~~~-~lPlI~l~ds-gG-----ar~qE-------Gi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG  208 (285)
T 2f9i_B          143 EKICRIIDYCTEN-RLPFILFSAS-GG-----ARMQE-------GIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGG  208 (285)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEEEEE-CS-----CCGGG-------HHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHH
T ss_pred             HHHHHHHHHHHHc-CCCEEEEEeC-CC-----cchhh-------hhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHH
Confidence            3456677777665 4556666543 22     21211       1111  123344456667778999999999999999


Q ss_pred             hHH-HhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           81 GLE-MALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        81 G~~-la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      +.. +++.+|++++.+++.+++--.+.-                          ...++...      .-..=+++...+
T Consensus       209 ~~as~a~~~D~i~a~p~A~i~~aGP~vi--------------------------~~~~~~~~------~e~~~~Ae~~~~  256 (285)
T 2f9i_B          209 VSASFASVGDINLSEPKALIGFAGRRVI--------------------------EQTINEKL------PDDFQTAEFLLE  256 (285)
T ss_dssp             HHTTGGGCCSEEEECTTCBEESSCHHHH--------------------------HHHHTSCC------CTTTTBHHHHHH
T ss_pred             HHHHhhhCCCEEEEeCCcEEEEcCHHHH--------------------------HHHhcccc------hHhHhhHHHHHh
Confidence            854 489999999999988776432210                          00111000      000113677779


Q ss_pred             cCccceecCCChHHHHHHHHHHHH
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEI  183 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~  183 (195)
                      .|+||.|+++++..+...++.+-+
T Consensus       257 ~G~iD~Iv~~~e~r~~l~~~L~~l  280 (285)
T 2f9i_B          257 HGQLDKVVHRNDMRQTLSEILKIH  280 (285)
T ss_dssp             TTCCSEECCGGGHHHHHHHHHHHT
T ss_pred             cCCccEEeChHHHHHHHHHHHHHh
Confidence            999999999887766666655443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.70  E-value=0.00092  Score=58.77  Aligned_cols=132  Identities=21%  Similarity=0.260  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.++++.+.+. .+-+|.+..+      .|..+.+-    ......+.+.+.... ++ .-..|.|+.+.|+|.||+.
T Consensus       113 ~Ki~ra~e~A~~~-~~P~I~l~~S------GGaRmqeg----~~sl~~~~~i~~~~~-~~-s~~iP~Isvv~gp~~GG~a  179 (522)
T 1x0u_A          113 NKIVRAYELALKV-GAPVVGINDS------GGARIQEG----ALSLEGYGAVFKMNV-MA-SGVIPQITIMAGPAAGGAV  179 (522)
T ss_dssp             HHHHHHHHHHHHH-TCCEEEEECC------CSBCGGGT----HHHHHHHHHHHHHHH-HH-TTTSCEEEEECSEEEGGGG
T ss_pred             HHHHHHHHHHHHc-CCCEEEEEcC------CCCChhHH----HHHHHHHHHHHHHHH-Hh-CCCCcEEEEEcCCCchHHH
Confidence            4566777777665 4556666543      35555331    112222222233322 22 3459999999999999999


Q ss_pred             HHhhhCCEEEEeCC-c-eeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCH-----H
Q 029329           83 EMALACDLRICGEA-A-LLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSG-----K  155 (195)
Q Consensus        83 ~la~~~D~~va~~~-a-~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a-----~  155 (195)
                      .....||++|+.++ + .+++.-.                              +.+-       -.+|+.++.     .
T Consensus       180 ~s~~l~D~~i~~~~~a~~i~~aGP------------------------------~vI~-------~~~ge~~~~e~lgga  222 (522)
T 1x0u_A          180 YSPALTDFIIMIKGDAYYMFVTGP------------------------------EITK-------VVLGEEVSFQDLGGA  222 (522)
T ss_dssp             HHHHHSSEEEEECSTTCEEESSCH------------------------------HHHH-------HTTCCCCCHHHHHBH
T ss_pred             HHHhcCCeEEEecCCccEEEecCH------------------------------HHHH-------HHhCCcCChhhcchH
Confidence            88999999999998 7 6655321                              1111       034566664     3


Q ss_pred             HHH--hcCccceecCCC-hHHHHHHHHHHHHh
Q 029329          156 DAM--SLGLVNYYVPAG-QAQLKALEIAQEIN  184 (195)
Q Consensus       156 eA~--~~Glvd~v~~~~-~~~~~a~~~a~~~~  184 (195)
                      |.+  +.|++|.+++++ +..+.+.++..-+-
T Consensus       223 e~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp  254 (522)
T 1x0u_A          223 VVHATKSGVVHFMVDSEQEAINLTKRLLSYLP  254 (522)
T ss_dssp             HHHHHTTCCCSEEESCHHHHHHHHHHHHHHSC
T ss_pred             HHHhhcCceeEEEeCCHHHHHHHHHHHHHhcc
Confidence            333  689999999964 45566666655544

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.66  E-value=0.0012  Score=58.28  Aligned_cols=87  Identities=22%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.++++.+.+. .+-+|.+.-+      .|..+.+-    ......+.+.+.... ++ .-..|.|+.+.|+|.||+.
T Consensus       130 ~Ki~ra~e~A~~~-~lP~I~l~dS------GGARmqeg----~~sl~~~~~i~~~~~-~~-s~~iP~Isvv~gp~~GG~a  196 (548)
T 2bzr_A          130 EKIVKVQELAIKT-GRPLIGINDG------AGARIQEG----VVSLGLYSRIFRNNI-LA-SGVIPQISLIMGAAAGGHV  196 (548)
T ss_dssp             HHHHHHHHHHHHH-TCCEEEEECC------CSCCGGGT----THHHHHHHHHHHHHH-HT-TTTSCEEEEECSEEESGGG
T ss_pred             HHHHHHHHHHHHc-CCCEEEEEcC------CCCCchhH----HHHHHHHHHHHHHHH-Hh-cCCCcEEEEecCCCchHHH
Confidence            4566777777665 4556666543      35555331    111222222222222 12 3348999999999999998


Q ss_pred             HHhhhCCEEEEeCC-ceeecc
Q 029329           83 EMALACDLRICGEA-ALLGLP  102 (195)
Q Consensus        83 ~la~~~D~~va~~~-a~~~~~  102 (195)
                      .....||++|+.++ +.+++.
T Consensus       197 ~s~al~D~ii~~~~~a~i~~a  217 (548)
T 2bzr_A          197 YSPALTDFVIMVDQTSQMFIT  217 (548)
T ss_dssp             HHHHHSSEEEEETTTCEEESS
T ss_pred             HHHHhCCeEEeccCceeEEec
Confidence            88889999999997 776654

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.52  E-value=0.00057  Score=60.38  Aligned_cols=85  Identities=31%  Similarity=0.376  Sum_probs=60.9

Q ss_pred             HHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhh
Q 029329           59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLV  137 (195)
Q Consensus        59 ~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i  137 (195)
                      ..++.....|+|+.+.|.|.|||......||++|+.++ +.+.+.-      |                        +++
T Consensus       190 ~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~aG------P------------------------~vi  239 (555)
T 3u9r_B          190 QANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAG------P------------------------PLV  239 (555)
T ss_dssp             HHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSSC------H------------------------HHH
T ss_pred             HHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEcc------H------------------------HHH
Confidence            34556678999999999999999999999999888764 4333211      1                        111


Q ss_pred             cHHHHHHHHHcCCCCCHHHH-------HhcCccceecCCChHHHHHHHHHHHH
Q 029329          138 GKSVAKDIIFTGRKVSGKDA-------MSLGLVNYYVPAGQAQLKALEIAQEI  183 (195)
Q Consensus       138 g~~~a~~l~l~g~~~~a~eA-------~~~Glvd~v~~~~~~~~~a~~~a~~~  183 (195)
                           +  ..+|+.+++++.       .+.|++|.++++|+   ++...++++
T Consensus       240 -----k--~~~ge~~~~e~LGGa~~h~~~sGv~d~v~~de~---~a~~~~r~~  282 (555)
T 3u9r_B          240 -----K--AATGEVVSAEELGGADVHCKVSGVADHYAEDDD---HALAIARRC  282 (555)
T ss_dssp             -----H--HHHCCCCCHHHHHBHHHHHHTTCSCSEEESSHH---HHHHHHHHH
T ss_pred             -----H--HHhcCccChhhccchhhhhhccCceeEEeCCHH---HHHHHHHHH
Confidence                 1  157899999888       78999999998854   344444443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.46  E-value=0.00043  Score=60.90  Aligned_cols=154  Identities=14%  Similarity=0.099  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHH
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE   83 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~   83 (195)
                      ...+.++.+++. ++=+|.+.-. + .|..|.+-         +.....+.+.+++..+.....|.|+.+-|.+.|||+.
T Consensus       348 K~ar~i~~a~~~-~~Plv~l~ds-~-G~~~G~~~---------E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~  415 (522)
T 1x0u_A          348 KAARFIRFCDAF-NIPLISLVDT-P-GYVPGTDQ---------EYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHI  415 (522)
T ss_dssp             HHHHHHHHHHHT-TCCEEEEEEE-C-CBCCSHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             HHHHHHHHHhhC-CCCEEEEecC-C-CCCCchHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHH
Confidence            455566666544 4555555443 2 24444321         1222345666778888889999999999999999876


Q ss_pred             Hhhh----CCEEEEeCCceeeccccc--ccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           84 MALA----CDLRICGEAALLGLPETG--LAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        84 la~~----~D~~va~~~a~~~~~e~~--~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      ...+    +|+++|.+++.+++-...  ..+.-.  . .+.   ...+ .       ..+-.....+.-  -..-++..+
T Consensus       416 ~~a~~a~~~D~v~a~p~A~i~v~gpegaa~Il~r--~-~i~---~~~d-~-------~~~~~~l~~~y~--~~~~~~~~~  479 (522)
T 1x0u_A          416 AMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYR--K-EIQ---QASN-P-------DDVLKQRIAEYR--KLFANPYWA  479 (522)
T ss_dssp             HTCCGGGTCSEEEECTTCEEESSCHHHHHHHHTS--S-SSS---SSSS-S-------SSSSHHHHHHHH--HHHSSSHHH
T ss_pred             HhcccccCCCEEEEeCCCEEEecCHHHHHHHHhh--h-hhh---cccC-H-------HHHHHHHHHHHH--HhcCCHHHH
Confidence            6655    999999999988764332  111100  0 000   0000 0       001111111110  012346779


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhh
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                      .+.|+||.|+++.+..+...+..+.+..
T Consensus       480 ~~~G~iD~II~p~~tR~~L~~~L~~~~~  507 (522)
T 1x0u_A          480 AEKGLVDDVIEPKDTRRVIVAGLEMLKT  507 (522)
T ss_dssp             HHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             HhcCCCcEeECHHHHHHHHHHHHHHHhh
Confidence            9999999999998877666666655543

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.41  E-value=0.005  Score=54.13  Aligned_cols=86  Identities=19%  Similarity=0.257  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.++++.+.+.. +-+|.+.-+      .|..+.+    .......+.+.+.... + .....|+|+.+.|+|.|||.
T Consensus       120 ~Ki~r~~e~A~~~~-lPvI~l~dS------gGAR~qe----g~~~l~g~~~~~~~~~-~-~s~~iP~Isvv~Gp~~GG~a  186 (527)
T 1vrg_A          120 KKIVKLLDLALKMG-IPVIGINDS------GGARIQE----GVDALAGYGEIFLRNT-L-ASGVVPQITVIAGPCAGGAV  186 (527)
T ss_dssp             HHHHHHHHHHHHHT-CCEEEEEEE------CSBCGGG----THHHHHHHHHHHHHHH-H-HTTTSCEEEEEEEEEBGGGG
T ss_pred             HHHHHHHHHHHHcC-CCEEEEECC------CCCCccc----hhHHHHHHHHHHHHHH-H-hCCCCCEEEEEeCCCchHHH
Confidence            45666777766653 344444432      2333322    1111223333333332 2 24569999999999999998


Q ss_pred             HHhhhCCEEEEeCC-ceeec
Q 029329           83 EMALACDLRICGEA-ALLGL  101 (195)
Q Consensus        83 ~la~~~D~~va~~~-a~~~~  101 (195)
                      .....||++|+.++ +.+++
T Consensus       187 ~s~al~D~vi~~~~~a~i~~  206 (527)
T 1vrg_A          187 YSPALTDFIVMVDQTARMFI  206 (527)
T ss_dssp             HHHHHSSEEEEETTTCBCBS
T ss_pred             HHHHcCCeEEEecCceEEEe
Confidence            88889999999987 65433

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.32  E-value=0.0028  Score=55.73  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhh----CCEEEEeCCceeecccccccccCCCCCccchhhhhhccc
Q 029329           51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----CDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDR  126 (195)
Q Consensus        51 ~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~----~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~  126 (195)
                      ..+.+.+++..+.....|+|+.|-|.+.|||+.-...    +|+++|.+++.++.-.       +               
T Consensus       388 ~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~Vm~-------p---------------  445 (527)
T 1vrg_A          388 IIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMG-------P---------------  445 (527)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC-------H---------------
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEecC-------H---------------
Confidence            4556667788888899999999999999888765544    8999988888776422       2               


Q ss_pred             CCccchhhh-hh----cHHHHHH-HHH--cCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhh
Q 029329          127 AGGTQRLPR-LV----GKSVAKD-IIF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       127 ~g~~~~l~~-~i----g~~~a~~-l~l--~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                      .++...+-+ .+    .....++ +.-  .-..-++..+.+.|+||.|+++.+..+...+..+.+..
T Consensus       446 egaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~~  512 (527)
T 1vrg_A          446 EGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCET  512 (527)
T ss_dssp             HHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHhc
Confidence            111111111 10    1111111 211  11135678899999999999998776666555555543

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.17  E-value=0.0063  Score=54.15  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=91.0

Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHh
Q 029329            6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA   85 (195)
Q Consensus         6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la   85 (195)
                      .+.++.+++ .++-+|.+.-  -..|..|.+-         +.....+.+.+++..+.....|+|+.|-|.+.|||+.-.
T Consensus       396 arfi~~c~~-~~iPlv~lvD--tpGf~~G~~~---------E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~Ggg~~am  463 (587)
T 1pix_A          396 NEFVTLCAR-DRLPIVWIQD--TTGIDVGNDA---------EKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVL  463 (587)
T ss_dssp             HHHHHHHHH-TTCCEEEEEC--CCEECCSHHH---------HHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHT
T ss_pred             HHHHHHhhc-CCCCeEEEec--CCCCCCcHHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCccHHHHHh
Confidence            344544443 3555655543  2457666632         223456778889999999999999999999998885544


Q ss_pred             hh----C--CEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhh-hhcH---------HH---HHHHH
Q 029329           86 LA----C--DLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPR-LVGK---------SV---AKDII  146 (195)
Q Consensus        86 ~~----~--D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~-~ig~---------~~---a~~l~  146 (195)
                      ..    .  |++++.+++.++.-.       +               .|+...+-+ ....         ..   ..++.
T Consensus       464 ~~~~~~~~~d~~~a~p~A~~~Vm~-------p---------------egaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~  521 (587)
T 1pix_A          464 GGPQGNDTNAFSIGTAATEIAVMN-------G---------------ETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLI  521 (587)
T ss_dssp             TCTTCTTTEEEEEECTTCEEESSC-------H---------------HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             cCcccCcccceeeeccCCeEecCC-------H---------------HHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHH
Confidence            43    5  999999988876422       1               111111111 1000         00   01110


Q ss_pred             H-cCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcC
Q 029329          147 F-TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV  187 (195)
Q Consensus       147 l-~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~  187 (195)
                      - --+..++..+.+.|+||.|+++.+.........+.+..++
T Consensus       522 ~~y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~  563 (587)
T 1pix_A          522 QAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  563 (587)
T ss_dssp             HHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence            0 0124788899999999999999887766666666665554

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=97.15  E-value=0.004  Score=55.37  Aligned_cols=108  Identities=14%  Similarity=0.073  Sum_probs=63.6

Q ss_pred             HHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccc--cccCCCCCccchhhhhhcccCCccchhhhhh
Q 029329           60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL--AIIPGCSDRSLSHVILASDRAGGTQRLPRLV  137 (195)
Q Consensus        60 ~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~--G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i  137 (195)
                      .++.....|+|+.+-|.|.|||...++++|++++.+++.+.+.-.++  |+.|.               +-...--...+
T Consensus       176 ~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~---------------g~~~~~~~~~~  240 (588)
T 3gf3_A          176 SELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPK---------------GYIDDEAAEQI  240 (588)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------------------CHHH
T ss_pred             HHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCcc---------------ccccccchhhh
Confidence            44556789999999999999987778889999999998887754332  32221               00000000000


Q ss_pred             cHHHHHHHHHcCCCCCHHHHH--hcCccceecCCCh-HHHHHHHHHHH
Q 029329          138 GKSVAKDIIFTGRKVSGKDAM--SLGLVNYYVPAGQ-AQLKALEIAQE  182 (195)
Q Consensus       138 g~~~a~~l~l~g~~~~a~eA~--~~Glvd~v~~~~~-~~~~a~~~a~~  182 (195)
                      ......+-..+.+.+.+.+.+  ..|++|.++++|+ ..+.++++..-
T Consensus       241 ~~~~~ge~~vs~eeLGGa~~h~~~sGv~d~~a~de~~al~~~r~~ls~  288 (588)
T 3gf3_A          241 IAAQIENSKLKVPAPGSVPIHYDETGFFREVYQNDLGVIDGIKKYISY  288 (588)
T ss_dssp             HHHHHHHHHTTCCCTTBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHT
T ss_pred             hhhhccccccChhhccchhhhccccccceEEeCCHHHHHHHHHHHHHh
Confidence            011111111466778777777  5899999998863 34444444433

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.06  E-value=0.0063  Score=53.49  Aligned_cols=113  Identities=13%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhh----CCEEEEeCCceeecccccccccCCCCCccchhhhhhcc
Q 029329           50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----CDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASD  125 (195)
Q Consensus        50 ~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~----~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~  125 (195)
                      ...+.+.+++..+.+...|+|+.|-|.+.|||+.-...    +|+++|.+++.++.-       ++              
T Consensus       383 Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~Vm-------~p--------------  441 (523)
T 1on3_A          383 GIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVM-------GA--------------  441 (523)
T ss_dssp             THHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESS-------CH--------------
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEec-------CH--------------
Confidence            34566777888888999999999999999988766655    899888888777542       22              


Q ss_pred             cCCccchhhhh-h----cHHHHH-HHHH--cCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHh
Q 029329          126 RAGGTQRLPRL-V----GKSVAK-DIIF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN  184 (195)
Q Consensus       126 ~~g~~~~l~~~-i----g~~~a~-~l~l--~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~  184 (195)
                       .|+...+-+. +    .....+ ++.-  .-..-++..+.+.|+||.|+++.+..+...+..+.+.
T Consensus       442 -egaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~  507 (523)
T 1on3_A          442 -EGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYA  507 (523)
T ss_dssp             -HHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGG
T ss_pred             -HHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHh
Confidence             1211111111 0    111111 1211  0112456789999999999999777666555555544

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.89  E-value=0.0044  Score=54.71  Aligned_cols=85  Identities=20%  Similarity=0.240  Sum_probs=56.0

Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHH
Q 029329            5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM   84 (195)
Q Consensus         5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~l   84 (195)
                      ..+.++.+++. ++=+|.+.-.  ..|..|.+-         +.....+...+++..+.+...|+|+.|-|.+.|||+.-
T Consensus       371 aar~i~~a~~~-~iPlv~lvDt--~Gf~~G~~~---------E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~a  438 (548)
T 2bzr_A          371 AARFVRTCDCF-NIPIVMLVDV--PGFLPGTDQ---------EYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCV  438 (548)
T ss_dssp             HHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             HHHHHHHHHhc-CCCEEEEeec--cCCCCChHH---------HHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHH
Confidence            34455555443 4444444322  235555532         22233456667777888899999999999999988766


Q ss_pred             hhh----CCEEEEeCCceeec
Q 029329           85 ALA----CDLRICGEAALLGL  101 (195)
Q Consensus        85 a~~----~D~~va~~~a~~~~  101 (195)
                      ...    +|+++|.+++.++.
T Consensus       439 m~~~~~~~d~~~awp~a~i~V  459 (548)
T 2bzr_A          439 MGSKDMGCDVNLAWPTAQIAV  459 (548)
T ss_dssp             TTCGGGTCSEEEECTTCEEES
T ss_pred             hccccCCCCEEEEcCCCEEEe
Confidence            543    99999999988765

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=96.48  E-value=0.011  Score=53.66  Aligned_cols=35  Identities=20%  Similarity=0.126  Sum_probs=32.0

Q ss_pred             CCCcEEEEECCcccchhHHHhhhCCEEEEeCCcee
Q 029329           65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALL   99 (195)
Q Consensus        65 ~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~   99 (195)
                      ...|+|+.+.|.|.|||..+...||++|+.+++.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~i  279 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPI  279 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCE
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceE
Confidence            46799999999999999999999999999998643

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.36  E-value=0.031  Score=49.13  Aligned_cols=147  Identities=15%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHh
Q 029329            6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA   85 (195)
Q Consensus         6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la   85 (195)
                      .+.++.+++. ++=+|.|.-. + .|-.|.+-         +.....+...+++..+.+...|+|+.|-|.+.|||+.-.
T Consensus       357 arfi~~c~~~-~iPlv~lvDt-p-Gf~~G~~~---------E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~~am  424 (530)
T 3iav_A          357 ARFVRTCDAF-NVPVLTFVDV-P-GFLPGVDQ---------EHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYVVM  424 (530)
T ss_dssp             HHHHHHHHHT-TCCEEEEEEE-C-CBCCCHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHT
T ss_pred             HHHHHHHHhc-CCCEEEEeeC-C-CCCccHHH---------HHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHHh
Confidence            3444444443 3455555432 2 25555532         223456777888889999999999999999998776444


Q ss_pred             hh----CCEEEEeCCceeecc--cccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHH--cCCCCCHHHH
Q 029329           86 LA----CDLRICGEAALLGLP--ETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIF--TGRKVSGKDA  157 (195)
Q Consensus        86 ~~----~D~~va~~~a~~~~~--e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l--~g~~~~a~eA  157 (195)
                      ..    +|+++|.+++.++.-  |.-..+.-.         +     ....  . +--....-.++.-  .-+.-++..|
T Consensus       425 ~~~~~~~d~~~awp~a~~~Vm~~egaa~il~r---------~-----~~~~--~-~~d~~~~~~~~~~~y~~~~~~p~~a  487 (530)
T 3iav_A          425 GSKHLGADLNLAWPTAQIAVMGAQGAVNILHR---------R-----TIAD--A-GDDAEATRARLIQEYEDALLNPYTA  487 (530)
T ss_dssp             TCGGGTCSEEEECTTCEEESSCHHHHHHHHTS---------T-----TTST--T-CTTCHHHHHHHHHHHHHHHSSSHHH
T ss_pred             cCCCCCCCEEEEcCCceEecCCHHHHHHHHhh---------h-----hhhh--c-ccCHHHHHHHHHHHHHHhcCCHHHH
Confidence            33    799999999888653  221121110         0     0000  0 0000111111111  1112356778


Q ss_pred             HhcCccceecCCChHHHHHHHHHH
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQ  181 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~  181 (195)
                      .+.|+||.|+++.+.........+
T Consensus       488 a~~~~vD~VIdP~~TR~~l~~~l~  511 (530)
T 3iav_A          488 AERGYVDAVIMPSDTRRHIVRGLR  511 (530)
T ss_dssp             HHTTSSSEECCGGGHHHHHHHHHH
T ss_pred             HhcCCCCcccCHHHHHHHHHHHHH
Confidence            899999999999876654444333

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.28  E-value=0.007  Score=53.20  Aligned_cols=109  Identities=16%  Similarity=0.103  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhh----CCEEEEeCCceeecc--cccccccCCCCCccchhhhhh
Q 029329           50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----CDLRICGEAALLGLP--ETGLAIIPGCSDRSLSHVILA  123 (195)
Q Consensus        50 ~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~----~D~~va~~~a~~~~~--e~~~G~~p~~~~~~~~~~~~~  123 (195)
                      ...+...+++..+.+...|+|+.|-|.+.|||+.-...    +|+++|.+++.++.-  |.-..+.-.         +- 
T Consensus       395 Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~Vm~pegaa~Il~r---------~~-  464 (531)
T 3n6r_B          395 GVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMGAKGATEIIHR---------GD-  464 (531)
T ss_dssp             THHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHCC---------TT-
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEecCCHHHHHHHHhc---------cc-
Confidence            44667788888999999999999999999988755554    999999999887653  221111110         00 


Q ss_pred             cccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHH
Q 029329          124 SDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE  178 (195)
Q Consensus       124 ~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~  178 (195)
                         ...    ... -.....+.--  +.-++..|.+.|+||.|+++.+.......
T Consensus       465 ---~~~----~~~-~~~~~~~y~~--~~~~p~~aa~~~~vD~vIdP~~TR~~l~~  509 (531)
T 3n6r_B          465 ---LGD----PEK-IAQHTADYEE--RFANPFVASERGFVDEVIQPRSTRKRVAR  509 (531)
T ss_dssp             ---TTS----TTH-HHHHHHHHHH--HHSSSHHHHHHTSSSEECCGGGHHHHHHH
T ss_pred             ---ccc----hhH-HHHHHHHHHH--HhcCHHHHHhcCccCcccCHHHHHHHHHH
Confidence               000    000 0111111111  12345567899999999999776554433

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.07  E-value=0.21  Score=44.02  Aligned_cols=84  Identities=14%  Similarity=0.165  Sum_probs=55.8

Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHh
Q 029329            6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA   85 (195)
Q Consensus         6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la   85 (195)
                      .+.++.+++. ++-+|.+.-. + .|..|.+-         +.....+.+.+++..+.+...|+|+.|-|.+.|||..-.
T Consensus       377 arfi~~c~~~-~iPlv~lvDt-p-Gf~~G~~~---------E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am  444 (555)
T 3u9r_B          377 AHFIELACQR-GIPLLFLQNI-T-GFMVGQKY---------EAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGM  444 (555)
T ss_dssp             HHHHHHHHHH-TCCEEEEEEE-C-CBCCSHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHT
T ss_pred             HHHHHHHhcC-CCCEEEEecC-c-CCCCCHHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhh
Confidence            3444444432 4555555443 2 35555532         222345667788888999999999999999988875443


Q ss_pred             h----hCCEEEEeCCceeec
Q 029329           86 L----ACDLRICGEAALLGL  101 (195)
Q Consensus        86 ~----~~D~~va~~~a~~~~  101 (195)
                      +    .+|+++|.+++.++.
T Consensus       445 ~~~~~~~d~~~a~p~A~i~V  464 (555)
T 3u9r_B          445 CGRAYDPRFLWMWPNARIGV  464 (555)
T ss_dssp             TCGGGCCSEEEECTTCEEES
T ss_pred             cCccCCCCeEEEcCCcEEEc
Confidence            3    479999988888765

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.91  E-value=0.019  Score=51.09  Aligned_cols=125  Identities=11%  Similarity=-0.008  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhh----C--CEEEEeCCceeeccccc--ccccCCCCCccchhh
Q 029329           49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----C--DLRICGEAALLGLPETG--LAIIPGCSDRSLSHV  120 (195)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~----~--D~~va~~~a~~~~~e~~--~G~~p~~~~~~~~~~  120 (195)
                      ....+...+++..+.+...|.|+.|-|.+.|||+...+.    .  |+++|.++++++.-...  ..+         .|.
T Consensus       429 ~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEgaa~I---------l~~  499 (588)
T 3gf3_A          429 AELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAANA---------MYS  499 (588)
T ss_dssp             TTHHHHHHHHHHHHHHHCSCEEEEESSEEETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHH---------HHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCCccHHHHHHhcccccCCccceEEECCCceEEeCCHHHHHHH---------Hhh
Confidence            345677888889999999999999999998887654443    2  38888888877653211  111         000


Q ss_pred             hhhc--ccCCcc--chhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcC
Q 029329          121 ILAS--DRAGGT--QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV  187 (195)
Q Consensus       121 ~~~~--~~~g~~--~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~  187 (195)
                      .-..  .+.+..  ... ... .....++-   +..++--|.+.|+||.|+++.+.......+.+...++|
T Consensus       500 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~y~---~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~~~~p  565 (588)
T 3gf3_A          500 RKLVKAKKAGEDLQPII-GKM-NDMIQMYT---DKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNP  565 (588)
T ss_dssp             HHHHHC-------CHHH-HHH-HHHHHHHH---HTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC
T ss_pred             hHHhhhhccccccchHH-HHH-HHHHHHHH---HhCCHHHHHhcCCCCeeeCHHHHHHHHHHHHHHHHcCC
Confidence            0000  000000  000 000 01111111   13478888899999999999888777766666655544

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=95.89  E-value=0.02  Score=52.52  Aligned_cols=37  Identities=27%  Similarity=0.150  Sum_probs=33.4

Q ss_pred             CCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeec
Q 029329           65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL  101 (195)
Q Consensus        65 ~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~  101 (195)
                      ...|+|+.|.|.|.|||..++..||++|+.+++.+.+
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l  294 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL  294 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence            3699999999999999999999999999999866544

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=89.90  E-value=1.1  Score=40.90  Aligned_cols=84  Identities=15%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEEC--CcccchhHH
Q 029329            6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID--GAALGGGLE   83 (195)
Q Consensus         6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~--G~a~ggG~~   83 (195)
                      .+.++.+++..++-+|.+.-  -..|..|.+-         +.....+...+++..+.+++.|+|+.|-  |.+.||++ 
T Consensus       458 ArfI~lcd~~f~iPLv~LvD--tpGf~~G~~a---------E~~Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~-  525 (758)
T 3k8x_A          458 AQAINDFNNGEQLPMMILAN--WRGFSGGQRD---------MFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSW-  525 (758)
T ss_dssp             HHHHHHHHHTSCCCEEECCC--CCEECCSHHH---------HHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHH-
T ss_pred             HHHHHHhhhccCCCEEEEec--CCCCCCCHHH---------HHccHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHH-
Confidence            34555555524555555533  3467777632         2234567788899999999999999998  88988776 


Q ss_pred             Hhhh----CCE--EEEeCCceeec
Q 029329           84 MALA----CDL--RICGEAALLGL  101 (195)
Q Consensus        84 la~~----~D~--~va~~~a~~~~  101 (195)
                      ++++    +|+  ++|.+++.++.
T Consensus       526 ~am~~~~~ad~~~v~Awp~A~isV  549 (758)
T 3k8x_A          526 VVVDPTINADQMEMYADVNARAGV  549 (758)
T ss_dssp             HTTCGGGSTTTEEEEEETTCEEES
T ss_pred             HHhCcccCCCHHHHhcCCCCEEEc
Confidence            4554    666  88888887765

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=85.59  E-value=1.6  Score=35.93  Aligned_cols=52  Identities=6%  Similarity=0.102  Sum_probs=36.8

Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHH--cCCCcEEEEECCcccc
Q 029329            5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLE--ALPIPTIAVIDGAALG   79 (195)
Q Consensus         5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kp~Iaav~G~a~g   79 (195)
                      +.+.|+.+++||+.++|++.|.-++     .          .       . +++++.+.  +..||+|+..-|.+..
T Consensus       211 ~~D~l~~~~~Dp~T~~I~l~gEi~g-----~----------~-------e-~~~~~~~r~~~~~KPVV~~kaGrs~~  264 (334)
T 3mwd_B          211 FMDHVLRYQDTPGVKMIVVLGEIGG-----T----------E-------E-YKICRGIKEGRLTKPIVCWCIGTCAT  264 (334)
T ss_dssp             HHHHHHHHHTCTTCCEEEEEEESSS-----S----------H-------H-HHHHHHHHTTSCCSCEEEEEECTTCC
T ss_pred             HHHHHHHHhcCCCCCEEEEEEecCC-----h----------H-------H-HHHHHHHHhhcCCCCEEEEEcCCCcc
Confidence            6788999999999999999975221     1          1       1 23333343  3789999999988753

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=85.53  E-value=2.3  Score=34.15  Aligned_cols=53  Identities=13%  Similarity=0.172  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      ++.+.|+.+.+||+.++|++.+.+.+      |-        +   +   ........  ...||+|+..-|.+.
T Consensus       186 ~~~d~l~~~~~D~~t~~I~l~~E~~~------~~--------~---~---~~~~~~~~--~~~KPVv~~k~G~~~  238 (288)
T 1oi7_A          186 TFKDLLPLFNEDPETEAVVLIGEIGG------SD--------E---E---EAAAWVKD--HMKKPVVGFIGGRSA  238 (288)
T ss_dssp             CHHHHHHHHHTCTTCCEEEEEECSSS------SH--------H---H---HHHHHHHH--HCCSCEEEEESCC--
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEeeCC------CH--------H---H---HHHHHHHh--cCCCCEEEEEecCCC
Confidence            36788999999999999999997421      11        1   1   11122222  579999999999876

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=84.53  E-value=1.7  Score=35.01  Aligned_cols=52  Identities=17%  Similarity=0.363  Sum_probs=34.7

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      .+.+.|+.+++||++++|++.+.+.+      |-        +.      .   ..+.+....||+|+..-|.+.
T Consensus       192 ~~~d~l~~~~~D~~T~~I~l~~E~~g------~~--------~~------~---~~~~~~~~~KPVv~~k~G~~~  243 (294)
T 2yv1_A          192 RYKEVLDLFEKDDETEAIVMIGEIGG------GA--------EE------E---AAKFIEKMKKPVIGYIAGQSA  243 (294)
T ss_dssp             CHHHHHHHHHTCTTCSEEEEEEESSS------SH--------HH------H---HHHHHTTCSSCEEEEEECC--
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEeeCC------CH--------HH------H---HHHHHHhCCCCEEEEEecCCC
Confidence            36788999999999999999987421      11        10      0   112222379999999999875

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=82.93  E-value=1.4  Score=40.49  Aligned_cols=52  Identities=10%  Similarity=0.003  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEE--CCcccchhHHHh---hhCCE--EEEeCCceeec
Q 029329           50 FYVNTLRSTFSFLEALPIPTIAVI--DGAALGGGLEMA---LACDL--RICGEAALLGL  101 (195)
Q Consensus        50 ~~~~~~~~~~~~~~~~~kp~Iaav--~G~a~ggG~~la---~~~D~--~va~~~a~~~~  101 (195)
                      ...+.+.+++..+..+..|+|+.|  .|.+.||++.+.   +..|+  ++|.++++++.
T Consensus       505 Gi~~~gAkll~A~a~a~VP~itvI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V  563 (793)
T 2x24_A          505 QVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV  563 (793)
T ss_dssp             THHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEEecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence            456778889999999999999999  888876654332   35676  67777777754

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=82.87  E-value=3.4  Score=35.77  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=37.9

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      .+.+.|+.+.+||++++|++.+.+.      .         ++..       ++++...++..||||+..-|....+
T Consensus       158 ~~~D~l~~l~~Dp~T~~I~ly~E~~------~---------e~~~-------~~f~~~ar~~~KPVV~~k~Grs~~g  212 (480)
T 3dmy_A          158 SALTALEMLSADEKSEVLAFVSKPP------A---------EAVR-------LKIVNAMKATGKPTVALFLGYTPAV  212 (480)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEEESCC------C---------HHHH-------HHHHHHHHHHCSCEEEEETTCCCSS
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEecC------C---------cHHH-------HHHHHHHHhCCCCEEEEEeCCCCcc
Confidence            4778999999999999999999731      1         1111       2222223346899999999987544

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=82.52  E-value=2.9  Score=33.48  Aligned_cols=52  Identities=10%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      +.+.|+.+.+||++++|++.+.+.+      |-        +   ++   .+.+...  ...||+|+..-|.+.
T Consensus       187 ~~d~l~~l~~D~~t~~I~l~~E~~~------~~--------~---~~---~~~~~~~--~~~KPVv~~k~G~~~  238 (288)
T 2nu8_A          187 FIDILEMFEKDPQTEAIVMIGEIGG------SA--------E---EE---AAAYIKE--HVTKPVVGYIAGVTA  238 (288)
T ss_dssp             HHHHHHHHHTCTTCCEEEEEEESSS------SH--------H---HH---HHHHHHH--HCCSCEEEEEECTTC
T ss_pred             HHHHHHHHhcCCCCCEEEEEEeeCC------CH--------H---HH---HHHHHHh--cCCCCEEEEEeCCCC
Confidence            5788999999999999999987321      11        1   11   1112222  579999999998875

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=81.82  E-value=3.1  Score=33.48  Aligned_cols=54  Identities=17%  Similarity=0.313  Sum_probs=36.4

Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      ++.+.|+.+.+||++++|++.+..+      .|-        +      ....++.++ ....||+|+..-|.+.
T Consensus       193 ~~~d~l~~~~~D~~T~~I~l~~E~~------~~~--------~------~~~~~~~~~-~~~~KPVv~~k~G~s~  246 (297)
T 2yv2_A          193 SFTEALKLFQEDPQTEALVLIGEIG------GDM--------E------ERAAEMIKK-GEFTKPVIAYIAGRTA  246 (297)
T ss_dssp             CHHHHHHHHHTCTTCSEEEEEECSS------SSH--------H------HHHHHHHHT-TSCCSCEEEEESCCC-
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEeeC------CCH--------H------HHHHHHHHh-ccCCCCEEEEEeCCCC
Confidence            3678899999999999999999732      111        1      011122221 3579999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	5e-35
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	2e-15
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	9e-13
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	6e-11
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	7e-07
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	2e-05
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	6e-05
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	0.003
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	0.004

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  122 bits (306), Expect = 5e-35
 Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 18/161 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           ++  L  A ET  ED +    ++ +   K F AGAD+KE +  +      Y     S + 
Sbjct: 35  LIEELNQALETFEEDPAVGA-IVLTGGEKAFAAGADIKEMQNRTF--QDCYSGKFLSHWD 91

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  +  P IA ++G ALGGG E+A+ CD+   GE A  G PE  L  IPG         
Sbjct: 92  HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG--------- 142

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLG 161
                 AGGTQRL R VGKS+A +++ TG ++S +DA   G
Sbjct: 143 ------AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 70.1 bits (170), Expect = 2e-15
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 18/195 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAG--ADLKERRQMSPSEIHFYVNTLRST 58
           M   L  A + +  D     V++             A L+   ++   E + +  +L   
Sbjct: 27  MALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRL 86

Query: 59  FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLS 118
           F  +   P PT+A ++G A+ GG  +ALACDL +  E A LG  E  +  +         
Sbjct: 87  FHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVS---- 142

Query: 119 HVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 178
                         L R VG+  AKD++ TGR V  ++A +LGLVN   P G+A  +A  
Sbjct: 143 ------------VILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKA 190

Query: 179 IAQEINQKVQSVFRI 193
           +A+E+ +   +  R+
Sbjct: 191 LAEEVAKNAPTSLRL 205

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.8 bits (151), Expect = 9e-13
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLR---- 56
             R L   F+ IS+DS    V++     K+F +G DL +            V  +     
Sbjct: 32  FWRELVECFQKISKDSDCRAVVVSG-AGKMFTSGIDLMDMASDILQPPGDDVARIAWYLR 90

Query: 57  -------STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGE 95
                   TF+ +E  P P IA I G  +GGG+++  ACD+R C +
Sbjct: 91  DLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQ 136

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 6e-11
 Identities = 78/171 (45%), Positives = 113/171 (66%), Gaps = 15/171 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
           +++ L  A + +  D     ++IRS VP +FCAGADLKER +MS SE+  +V+ +R+  +
Sbjct: 34  LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 93

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            +  LP+PTIA IDG ALGGGLE+ALACD+R+   +A +GL ET LAIIPG         
Sbjct: 94  DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG--------- 144

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 171
                  GGTQRLPR +G S+AK++IF+ R + GK+A ++GL+++ +   Q
Sbjct: 145 ------GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 189

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 7e-07
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 6/191 (3%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
               L    E    +      +I+ S  + F +GAD K   +    + + Y +      S
Sbjct: 33  DYIYLGELLELADRNRDVYFTIIQ-SSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVS 91

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
              A  +              L         I   AAL+ L +   +I            
Sbjct: 92  NFVARNVYVTDAF--IKHSKVLICC-LNGPAIGLSAALVALCDIVYSINDKVYLLYPFAN 148

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL--E 178
           +      G T  LP   G +   + +   +          G ++       +  +A   +
Sbjct: 149 LGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAK 208

Query: 179 IAQEINQKVQS 189
           + +E+ +KV+ 
Sbjct: 209 VLEELREKVKG 219

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 17/110 (15%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL-----------------KERRQM 43
            +  L    +         VV++  + P     G                          
Sbjct: 48  TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTAD 107

Query: 44  SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC 93
           +          +      +  +P   I +++G A GGG  + + CDL + 
Sbjct: 108 TVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLA 157

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 40.5 bits (93), Expect = 6e-05
 Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 19/195 (9%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
            L  L+ A + I  D+S   V++ S    VF  GAD+ E  +         +        
Sbjct: 36  TLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIAGNLEANK 94

Query: 61  FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSL 117
                    +PT+A I+G ALGGGLEM LA D R+  ++A +GLPE  L I PG      
Sbjct: 95  IFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFG---- 150

Query: 118 SHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 177
                      GT RLPRL+G   A + I +G++   +DA+ +  V+  V A +    AL
Sbjct: 151 -----------GTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAAL 199

Query: 178 EIAQEINQKVQSVFR 192
           ++ +           
Sbjct: 200 DLIKRAISGELDYKA 214

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 16/186 (8%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
               L + F  I+ D    VV++  + P               +P +    +   +   +
Sbjct: 41  AHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDF-TSFNLGTPHDWDEIIFEGQRLLN 99

Query: 61  FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHV 120
            L ++ +P IA ++G          ++  +     A     P     I+PG     +   
Sbjct: 100 NLLSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPH 159

Query: 121 ILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 180
           +               +G +  +  + TG+++  + A+  G VN  +   +   +A E+A
Sbjct: 160 V---------------LGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELA 204

Query: 181 QEINQK 186
           + I +K
Sbjct: 205 RGIAEK 210

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 1   MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFY-----VNTL 55
            ++ +  A     ED S   VMI  +       G  L+E                     
Sbjct: 31  AMQEVTDALNRAEEDDSVGAVMITGAEDAFCA-GFYLREIPLDKGVAGVRDHFRIAALWW 89

Query: 56  RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA 97
                 +  +  P +A I+G A GGGL ++LA D+ IC ++A
Sbjct: 90  HQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.76
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.69
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.54
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.53
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	98.46
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	98.04
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.84
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.78
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.74
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.69
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.67
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.62
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.6
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.47
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.27
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.27
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	95.63
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	95.42
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	91.06
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	85.78

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=8.2e-45  Score=288.90  Aligned_cols=179  Identities=25%  Similarity=0.335  Sum_probs=167.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCC-hhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.+++++++.|+++|+|||+|+++++||+|.|++++.... .+....+.+.+.+++..+.++|||+||+|||+|+|
T Consensus        28 ~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~G  107 (230)
T d2a7ka1          28 LETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIG  107 (230)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeeeccccccc
Confidence            57899999999999999999999998778999999999987653 45667778889999999999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||+++|++|+               +|+ +++++++|..++++++++|++++++||++
T Consensus       108 gG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~---------------~g~-~~l~~~iG~~~a~~l~l~g~~~~a~eA~~  171 (230)
T d2a7ka1         108 MGFQFALMFDQRLMASTANFVMPELKHGIGCS---------------VGA-AILGFTHGFSTMQEIIYQCQSLDAPRCVD  171 (230)
T ss_dssp             HHHHHHTTSSEEEEETTCEEECCGGGGTCCCH---------------HHH-HHHHHHHCHHHHHHHHHHCCCBCHHHHHH
T ss_pred             ccccchhccchhhccccchhhhcccccccccc---------------ccc-cccccccccccccccccccccchHHHHHH
Confidence            99999999999999999999999999999887               654 67999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       172 ~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K  207 (230)
T d2a7ka1         172 YRLVNQVVESSALLDAAITQAHVMASYPASAFINTK  207 (230)
T ss_dssp             HTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             hhhcccCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.1e-45  Score=293.88  Aligned_cols=179  Identities=26%  Similarity=0.352  Sum_probs=169.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      |+++|.+++++++.|+++|+|||||+ |++||+|.|++++...  +++....+....++++..+.++||||||+|||+|+
T Consensus        37 m~~el~~~~~~~~~d~~vr~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~  115 (263)
T d1wz8a1          37 LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAV  115 (263)
T ss_dssp             HHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEE
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEEecc-cccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeeecccccc
Confidence            67899999999999999999999998 6999999999988643  44556677788899999999999999999999999


Q ss_pred             chhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        79 ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+
T Consensus       116 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~---------------~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~  180 (263)
T d1wz8a1         116 GAGLALALAADIAVVGKGTRLLDGHLRLGVAAG---------------DHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAE  180 (263)
T ss_dssp             THHHHHHHHSSEEEEETTCEEECCHHHHTSCCT---------------TTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc---------------cccccccccccccchhhhhcccccccchhHHH
Confidence            999999999999999999999999999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       181 ~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~~~K  217 (263)
T d1wz8a1         181 RLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTK  217 (263)
T ss_dssp             HHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             hcCCcccccchhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            9999999999999999999999999999999999886

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=290.45  Aligned_cols=180  Identities=28%  Similarity=0.354  Sum_probs=171.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++.+++|+++++|||+|+++++||+|.|++++...+......+...+++++.++.++|||+||+|||+|+||
T Consensus        31 ~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~Gg  110 (249)
T d1sg4a1          31 FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAG  110 (249)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHH
T ss_pred             HHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhccccccc
Confidence            57899999999999999999999998667899999999998777778888889999999999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCcee--ecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHH
Q 029329           81 GLEMALACDLRICGEAALL--GLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM  158 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~--~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  158 (195)
                      |++|+++||+||++++++|  ++||+++|+.|+               +|+++++++++|++++++++++|++++++||+
T Consensus       111 G~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~---------------~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~  175 (249)
T d1sg4a1         111 GCLVALTCDYRILADNPRYCIGLNETQLGIIAP---------------FWLKDTLENTIGHRAAERALQLGLLFPPAEAL  175 (249)
T ss_dssp             HHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCC---------------HHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHH
T ss_pred             ccccccccccceeeccccccccccccccccccc---------------cccccccccccccccccccccccccccHHHHH
Confidence            9999999999999999876  789999999999               99999999999999999999999999999999


Q ss_pred             hcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          159 SLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       159 ~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus       176 ~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K  212 (249)
T d1sg4a1         176 QVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTK  212 (249)
T ss_dssp             HHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             hhccccccCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999876

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-43  Score=281.13  Aligned_cols=178  Identities=20%  Similarity=0.330  Sum_probs=161.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChh----hHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS----EIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+.+|.++++++++|+.+ +||++|. |++||+|.|++++......    ....+...+++++.++.++|||+||+|||+
T Consensus        31 ~~~~l~~~l~~~~~d~~v-~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~  108 (245)
T d2f6qa1          31 MYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGP  108 (245)
T ss_dssp             HHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSC
T ss_pred             HHHHHHHHHHHHhcCCce-EEeecCC-CccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEEEECCc
Confidence            578999999999999887 7888997 7999999999998654432    233455667788999999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++++++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++|
T Consensus       109 a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~~g~~~a~~l~l~g~~~~a~e  173 (245)
T d2f6qa1         109 AVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPE---------------GCSSYTFPKIMSPAKATEMLIFGKKLTAGE  173 (245)
T ss_dssp             EETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCC---------------TTHHHHHHHHHCHHHHHHHHTTCCCEEHHH
T ss_pred             cccccccchhhhhhhhhhccCeEecccccCCCCcc---------------ccchhhcccccccchhhhhccccccccccc
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++|+++++.||.+++.+|
T Consensus       174 A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  212 (245)
T d2f6qa1         174 ACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISK  212 (245)
T ss_dssp             HHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             ccccccccccCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999876

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-43  Score=286.25  Aligned_cols=180  Identities=47%  Similarity=0.801  Sum_probs=169.1

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++++.++.|+++++|||||.++++||+|.|++.+..........+.+.+++++..+.++||||||+|||+|+||
T Consensus        34 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~Gg  113 (266)
T d1hzda_          34 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGG  113 (266)
T ss_dssp             HHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETH
T ss_pred             HHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccccccccccc
Confidence            67899999999999999999999998778999999999998877777778888999999999999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||+++
T Consensus       114 G~~lal~~D~~ia~~~a~f~~pe~~~G~~p~---------------~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~  178 (266)
T d1hzda_         114 GLELALACDIRVAASSAKMGLVETKLAIIPG---------------GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAV  178 (266)
T ss_dssp             HHHHHHHSSEEEEETTCEEECCGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHH
T ss_pred             cceeccccceeeecCCcEEeecccceeecCC---------------ccceeeehhhhHHHHHHhhhccCCccCHHHhhcc
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCCh----HHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQ----AQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~----~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||||+|+|+++    +.+.+.++++++++.||.+++.+|
T Consensus       179 Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~~~~K  217 (266)
T d1hzda_         179 GLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAK  217 (266)
T ss_dssp             TSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred             cccccccChhhhhhHHHHHHHHHHHhcccCChHHHHHHH
Confidence            99999999876    456677777899999999999876

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-43  Score=285.99  Aligned_cols=177  Identities=36%  Similarity=0.617  Sum_probs=163.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+++|.++|++++.|+++++|||+|. ++.||+|.|++++......  ..+...+.+++.++.++||||||+|||+|+||
T Consensus        35 ~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~kPvIaav~G~a~Gg  111 (260)
T d1mj3a_          35 LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQ--DCYSGKFLSHWDHITRIKKPVIAAVNGYALGG  111 (260)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCHH--HHHHC--CCGGGGGGGCSSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHhCCCcceEEEecc-cccccccchhhhhhccchh--hhhHHHHHHHHHHhccCCCeEEEEEcCeEeHH
Confidence            67899999999999999999999997 7999999999998654332  23445677778889999999999999999999


Q ss_pred             hHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhc
Q 029329           81 GLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL  160 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  160 (195)
                      |++|+++||+||++++++|++||+++|++|+               +|+++++++++|.+++++++++|++++++||+++
T Consensus       112 G~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~---------------~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~  176 (260)
T d1mj3a_         112 GCELAMMCDIIYAGEKAQFGQPEILLGTIPG---------------AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQA  176 (260)
T ss_dssp             HHHHHHHSSEEEEETTCEEECGGGGGTCCCC---------------SSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             HHHHHHHCCEEEEcCCCEEECchhccCcCCc---------------ccHHHHHHHHhCHHHHHHHHHcCcccCchhhccC
Confidence            9999999999999999999999999999999               9999999999999999999999999999999999


Q ss_pred             CccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          161 GLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       161 Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |||++|++.+++.+.+.++++++++.+|.+++.+|
T Consensus       177 Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~~~K  211 (260)
T d1mj3a_         177 GLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAK  211 (260)
T ss_dssp             TSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCceeeecccccccccccccccccchhhHHHHHHH
Confidence            99999999999999999999999999999999876

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-43  Score=284.61  Aligned_cols=178  Identities=21%  Similarity=0.379  Sum_probs=165.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC----ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA   76 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~   76 (195)
                      |+++|.++|+.+++| ++++||++|. |+.||+|.|++++...    .......+.+.+++++..+.++|||+||+|||+
T Consensus        31 ~~~el~~al~~~~~d-~~~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~  108 (258)
T d2fw2a1          31 VIKEMVNALNSAAAD-DSKLVLFSAA-GSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP  108 (258)
T ss_dssp             HHHHHHHHHHHHHHS-SCSEEEEEEC-SSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             HHHHHHHHHHHHHcC-CCEEEEEecC-ccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeeeeecccc
Confidence            678999999999987 4699999998 6999999999988543    223345677888999999999999999999999


Q ss_pred             ccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHH
Q 029329           77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD  156 (195)
Q Consensus        77 a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e  156 (195)
                      |+|||++++++||+||++++++|++||+++|++|+               +|+++++++++|.+++++++++|++++++|
T Consensus       109 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~---------------~g~~~~l~r~ig~~~a~~l~l~g~~~~a~e  173 (258)
T d2fw2a1         109 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD---------------GCSSITFPKMMGKASANEMLIAGRKLTARE  173 (258)
T ss_dssp             EETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCC---------------TTHHHHHHHHHCHHHHHHHHTTCCEEEHHH
T ss_pred             cccccccccccccccceecccceeecccccccccc---------------ccccccchhhcCccccchhhccCccccccc
Confidence            99999999999999999999999999999999999               999999999999999999999999999999


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       174 A~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K  212 (258)
T d2fw2a1         174 ACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECK  212 (258)
T ss_dssp             HHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhHHHHHHHH
Confidence            999999999999999999999999999999999998876

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=2e-42  Score=280.80  Aligned_cols=179  Identities=25%  Similarity=0.360  Sum_probs=165.5

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-----hhHHHHHHHHHHHHHHHHcCCCcEEEEECC
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----SEIHFYVNTLRSTFSFLEALPIPTIAVIDG   75 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G   75 (195)
                      |+.+|.++++++++|+++++|||||. ++.||+|.|++++.....     +....+...++.++.++.++|||+||+|||
T Consensus        31 ~~~el~~~l~~~~~d~~i~~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G  109 (269)
T d1nzya_          31 AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAING  109 (269)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEeCC-cccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchhehhhhh
Confidence            67899999999999999999999998 689999999998854321     223334456778999999999999999999


Q ss_pred             cccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHH
Q 029329           76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGK  155 (195)
Q Consensus        76 ~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~  155 (195)
                      +|+|||++|+++||+||++++++|++||.++|+.|+               +|+++++++++|..++++++++|++++++
T Consensus       110 ~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~---------------~g~~~~l~~~ig~~~a~~l~ltg~~i~a~  174 (269)
T d1nzya_         110 VAAGGGLGISLASDMAICADSAKFVCAWHTIGIGND---------------TATSYSLARIVGMRRAMELMLTNRTLYPE  174 (269)
T ss_dssp             EEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCC---------------TTHHHHHHHHHHHHHHHHHHHHCCCBCHH
T ss_pred             hcCCCceeeeecccHhhhhhhhhhcccccccccccc---------------cccccccccccChhhhhhccccccccchh
Confidence            999999999999999999999999999999999999               99999999999999999999999999999


Q ss_pred             HHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          156 DAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       156 eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ||+++||||+|+|++++.+++.++|+++++.||.+++++|
T Consensus       175 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  214 (269)
T d1nzya_         175 EAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAK  214 (269)
T ss_dssp             HHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHcCCccccccccccccchhhhhhhhhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999876

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=2.5e-42  Score=277.45  Aligned_cols=178  Identities=21%  Similarity=0.347  Sum_probs=168.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccch
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG   80 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~gg   80 (195)
                      |+.+|.++++++++|+++++|||+|. |+.||+|.|++++...+++....+...+++++.++.++|||||+++||+|.| 
T Consensus        41 ~~~el~~al~~~~~d~~v~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-  118 (249)
T d1szoa_          41 AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-  118 (249)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-
T ss_pred             HHHHHHHHHHHHHhCCCcceEeeecc-cccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeecccccc-
Confidence            57899999999999999999999998 6899999999998777778888888889999999999999999999998855 


Q ss_pred             hHHHhhhCCEEEEeCCceee-cccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           81 GLEMALACDLRICGEAALLG-LPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        81 G~~la~~~D~~va~~~a~~~-~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      |++|+++||+||++++++|. +||.++|++|+               +|+++++++++|..++++++++|++++++||++
T Consensus       119 G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~---------------~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~  183 (249)
T d1szoa_         119 APEIPVMSDIVLAAESATFQDGPHFPSGIVPG---------------DGAHVVWPHVLGSNRGRYFLLTGQELDARTALD  183 (249)
T ss_dssp             STHHHHTSSEEEEETTCEEECTTSGGGTCCCT---------------TTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHH
T ss_pred             ccccccccccccccCCcEEEEeeccccccccc---------------cccccccccccCccceeeecccCCCCCHHHHHH
Confidence            77899999999999999985 79999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++|++++++||.+++.+|
T Consensus       184 ~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  219 (249)
T d1szoa_         184 YGAVNEVLSEQELLPRAWELARGIAEKPLLARRYAR  219 (249)
T ss_dssp             HTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             hCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999876

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=4.7e-42  Score=283.89  Aligned_cols=173  Identities=37%  Similarity=0.553  Sum_probs=159.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.++++.++.|+++++|||+|. ++.||+|.|++++...   +..........+++++.++.++|||||++|||+|
T Consensus        36 ~~~el~~al~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  114 (310)
T d1wdka4          36 TLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIA  114 (310)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECC-CCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccceeeccccc
Confidence            57899999999999999999999997 7899999999998542   2333444455678899999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||+++|++|+               +|+++++++++|..++++++++|++++++||
T Consensus       115 ~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~---------------~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA  179 (310)
T d1wdka4         115 LGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPG---------------FGGTVRLPRLIGVDNAVEWIASGKENRAEDA  179 (310)
T ss_dssp             ETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCC---------------SSHHHHHHHHHCHHHHHHHHHHCCCEEHHHH
T ss_pred             cccccccchhhhhhhccccceecccccccCCCcc---------------ccchhhhhhhhhhhhhhhhhccccccCHHHH
Confidence            9999999999999999999999999999999999               9999999999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHH
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQS  189 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~  189 (195)
                      +++||||+|+|++++.+.+.++++++++.++.
T Consensus       180 ~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~  211 (310)
T d1wdka4         180 LKVSAVDAVVTADKLGAAALDLIKRAISGELD  211 (310)
T ss_dssp             HHTTSSSEEECGGGHHHHHHHHHHHHHTTSSC
T ss_pred             hhccCccEEccHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999987654

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.7e-43  Score=281.86  Aligned_cols=178  Identities=23%  Similarity=0.433  Sum_probs=160.0

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeC-CCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG   79 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~g   79 (195)
                      |+.+|.++|++++ ++++++|||+|. ++++||+|.|++++.....+ ...+.+.+++++.++.++||||||+|||+|+|
T Consensus        32 ~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~-~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~G  109 (261)
T d1ef8a_          32 FIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD-PLSYDDPLRQITRMIQKFPKPIISMVEGSVWG  109 (261)
T ss_dssp             HHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C-TTCTTSHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred             HHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc-ccccccchhhhHHHHHhCchhhhhcccccccc
Confidence            5789999999997 457999999985 46899999999998653222 12234567788999999999999999999999


Q ss_pred             hhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           80 GGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        80 gG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      ||++|+++||+||++++++|++||.++|++|+               +++++++++.+|..++++++++|+.++++||++
T Consensus       110 gG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~---------------~~~~~~l~r~~g~~~a~~~~l~g~~~~a~eA~~  174 (261)
T d1ef8a_         110 GAFEMIMSSDLIIAASTSTFSMTPVNLGVPYN---------------LVGIHNLTRDAGFHIVKELIFTASPITAQRALA  174 (261)
T ss_dssp             HHHHHHHHSSEEEEETTCEEECCHHHHTCCCC---------------HHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHH
T ss_pred             hhhhhhhhhhhhhhhHhHHHhhhhcccccccc---------------cccccccccccCccccccccccCceEcHHHHHH
Confidence            99999999999999999999999999999999               999999999999999999999999999999999


Q ss_pred             cCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          160 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +||||+|+|++++.+++.++++++++.+|.+++.+|
T Consensus       175 ~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~~~K  210 (261)
T d1ef8a_         175 VGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIK  210 (261)
T ss_dssp             TTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             cCCcceeeechhhhhhhHHHHHHHHhcCcHHHHHHH
Confidence            999999999999999999999999999999999876

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-41  Score=273.62  Aligned_cols=178  Identities=33%  Similarity=0.494  Sum_probs=164.6

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC---ChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcc
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA   77 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a   77 (195)
                      |+.+|.+++++++.|+++++|||||+ |+.||+|.|++.+...   +......+...++.++..+.++||||||+|||+|
T Consensus        27 ~~~el~~~l~~~~~d~~v~~vvl~g~-g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a  105 (253)
T d1uiya_          27 MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA  105 (253)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEecc-cccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEEEeCeEE
Confidence            57899999999999999999999998 7999999999887542   3445566677888899999999999999999999


Q ss_pred             cchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHH
Q 029329           78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA  157 (195)
Q Consensus        78 ~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA  157 (195)
                      +|||++|+++||+||++++++|++||.++|++|                .++++++++++|.+++++++++|++++++||
T Consensus       106 ~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~----------------~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA  169 (253)
T d1uiya_         106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVA----------------ALVSVILVRAVGEKAAKDLLLTGRLVEAREA  169 (253)
T ss_dssp             ETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC----------------HHHHHHHHHHSCHHHHHHHHHHCCEEEHHHH
T ss_pred             ehhhHHHHhhhhhhhhhhhhHHhhhhccccccc----------------ccchhhhhcccCHHHHHHHhhcCcCCCHHHH
Confidence            999999999999999999999999999999877                4568889999999999999999999999999


Q ss_pred             HhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          158 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       158 ~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      +++||||+|+|++++.+.+.++++++++.|+.+++.+|
T Consensus       170 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K  207 (253)
T d1uiya_         170 KALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTK  207 (253)
T ss_dssp             HHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHhCCCcccccccccchhHHHHHHhhcccchHHHHHHH
Confidence            99999999999999999999999999999999998876

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-41  Score=274.24  Aligned_cols=179  Identities=16%  Similarity=0.162  Sum_probs=156.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCCh-----------hhHHHHHHHHHHHHHHHHcCCCcE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLEALPIPT   69 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~kp~   69 (195)
                      |+.+|.++++++++|+++++|||+|. |++||+|.|++++.....           .....+...+..++..+.++||||
T Consensus        33 ~~~el~~al~~~~~d~~v~~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~  111 (266)
T d1pjha_          33 DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVL  111 (266)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEecc-ccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHhcchhh
Confidence            57899999999999999999999998 799999999999864321           223455677788999999999999


Q ss_pred             EEEECCcccchhHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHc
Q 029329           70 IAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFT  148 (195)
Q Consensus        70 Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~  148 (195)
                      ||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+               +|+++++++++|.+++++++++
T Consensus       112 IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~---------------~g~~~~l~r~~g~~~a~~lllt  176 (266)
T d1pjha_         112 ICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITE---------------GGTTVSLPLKFGTNTTYECLMF  176 (266)
T ss_dssp             EEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCC---------------TTHHHHHHHHHCHHHHHHHHHT
T ss_pred             hhhhhcccccccccchhccchhhhhhccccccccccccccccc---------------cccccccccccccchhhhhhcc
Confidence            999999999999999999999999755 789999999999999               9999999999999999999999


Q ss_pred             CCCCCHHHHHhcCccceecCCChHHH------HHHHHHHHHhhcCHHHHHhhC
Q 029329          149 GRKVSGKDAMSLGLVNYYVPAGQAQL------KALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       149 g~~~~a~eA~~~Glvd~v~~~~~~~~------~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |++++++||+++||||+|+++++...      .+.++++++...++.++..+|
T Consensus       177 g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~K  229 (266)
T d1pjha_         177 NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMK  229 (266)
T ss_dssp             TCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999998655432      244677788888998887665

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-40  Score=270.50  Aligned_cols=179  Identities=29%  Similarity=0.531  Sum_probs=160.4

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcC--C-----h----hhHHHHHHHHHHHHHHHHcCCCcE
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--S-----P----SEIHFYVNTLRSTFSFLEALPIPT   69 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~--~-----~----~~~~~~~~~~~~~~~~~~~~~kp~   69 (195)
                      |+.+|.++|+.+++|+++++|||||. ++.||+|.|+.++...  .     .    .....+...+++++..+.++||||
T Consensus        32 m~~el~~~l~~~~~d~~v~~vvltg~-~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  110 (275)
T d1dcia_          32 FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV  110 (275)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEecc-ccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHhcCCCE
Confidence            67899999999999999999999997 8999999999887532  1     1    123345566788889999999999


Q ss_pred             EEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcH-HHHHHHHHc
Q 029329           70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGK-SVAKDIIFT  148 (195)
Q Consensus        70 Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~-~~a~~l~l~  148 (195)
                      |++|||+|+|||++|+++|||||++++++|++||+++|++|+               +++++++++++|. ..+.+++++
T Consensus       111 Iaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~---------------~~~~~~~~~~~g~~~~~~~ll~~  175 (275)
T d1dcia_         111 IAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAAD---------------VGTLQRLPKVIGNRSLVNELTFT  175 (275)
T ss_dssp             EEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCC---------------SSHHHHGGGTCSCHHHHHHHHHH
T ss_pred             EEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccc---------------ccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999               9999999999994 456789999


Q ss_pred             CCCCCHHHHHhcCccceecCCCh-HHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          149 GRKVSGKDAMSLGLVNYYVPAGQ-AQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       149 g~~~~a~eA~~~Glvd~v~~~~~-~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      |++++++||+++||||+|+|+++ +.+++.++++++++.+|.+++.+|
T Consensus       176 g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K  223 (275)
T d1dcia_         176 ARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSK  223 (275)
T ss_dssp             CCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             ccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHHHHH
Confidence            99999999999999999999765 567888999999999999999876

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.2e-40  Score=269.94  Aligned_cols=180  Identities=23%  Similarity=0.369  Sum_probs=153.3

Q ss_pred             CHHHHHHHHHHhhcCCCcEEEEEEeCC------CCceEeccCcchhhcCCh-----------hhHHHHHHHHHHHHHHHH
Q 029329            1 MLRGLKHAFETISEDSSANVVMIRSSV------PKVFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLE   63 (195)
Q Consensus         1 m~~~l~~~l~~~~~d~~v~~vvl~g~~------~~~F~~G~Dl~~~~~~~~-----------~~~~~~~~~~~~~~~~~~   63 (195)
                      |+.+|.++++++++|+++|+|||||++      |+.||+|.|++.......           .........+.+++..+.
T Consensus        48 m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  127 (297)
T d1q52a_          48 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIR  127 (297)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999973      567888899876542211           111222334667888999


Q ss_pred             cCCCcEEEEECCcccchhHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHH
Q 029329           64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVA  142 (195)
Q Consensus        64 ~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a  142 (195)
                      ++||||||+|||+|+|||++++++||+||++++ ++|++||+++|++|+               .++++++++++|.+++
T Consensus       128 ~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~---------------~~~~~~L~r~iG~~~a  192 (297)
T d1q52a_         128 FMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDG---------------GYGSAYLARQVGQKFA  192 (297)
T ss_dssp             HSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCC---------------STTTHHHHHHHCHHHH
T ss_pred             hcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccccc---------------cccccccccccCccce
Confidence            999999999999999999999999999999876 579999999999999               8999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhcCHHHHHhhC
Q 029329          143 KDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL  195 (195)
Q Consensus       143 ~~l~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~k  195 (195)
                      ++++++|++++++||+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       193 ~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~~~K  245 (297)
T d1q52a_         193 REIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLK  245 (297)
T ss_dssp             HHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             eeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=1.8e-08  Score=75.08  Aligned_cols=112  Identities=12%  Similarity=0.058  Sum_probs=73.3

Q ss_pred             HHHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeecccccccccCCCCCccc--hhhhhhcccCCccc
Q 029329           56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSL--SHVILASDRAGGTQ  131 (195)
Q Consensus        56 ~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~--~~~~~~~~~~g~~~  131 (195)
                      ..++..+...+.|+...+.|.|.+.|..+++++|  .|++.++++|-+.+...|......+-..  ...+...++  ...
T Consensus        61 l~i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~--i~~  138 (179)
T d2cbya1          61 MAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKE--MFR  138 (179)
T ss_dssp             HHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHH--HHH
T ss_pred             HHHHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHH--HHH
Confidence            3566777789999999999999999999999999  8999999999998876555322111000  001111110  112


Q ss_pred             hhhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          132 RLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       132 ~l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      .+.+..|  ....++.+-.-..++|+||+++||||+|+..
T Consensus       139 i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         139 LNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            2223333  4455566667788999999999999999864

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=7.9e-09  Score=77.35  Aligned_cols=113  Identities=14%  Similarity=0.092  Sum_probs=73.9

Q ss_pred             HHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeecccccccccCCCCCc--cchhhhhhcccCCcc
Q 029329           55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGCSDR--SLSHVILASDRAGGT  130 (195)
Q Consensus        55 ~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~--~~~~~~~~~~~~g~~  130 (195)
                      ...++..+..++.|+...+.|.|.+.|..+.+++|  .|++.|+++|-+.+...|......+-  +..+.+...++  ..
T Consensus        63 g~~i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~--~~  140 (183)
T d1yg6a1          63 GMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGR--MN  140 (183)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHH--HH
T ss_pred             HHHHHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHH--HH
Confidence            44677788889999999999999999999999998  79999999999988765542210000  00000000000  01


Q ss_pred             chhhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          131 QRLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       131 ~~l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      ..+.+..|  .....+++-.-..++++||+++||||+|+..
T Consensus       141 ~~~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         141 ELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             HHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence            11222222  3344455444455799999999999999864

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.54  E-value=3e-07  Score=69.06  Aligned_cols=115  Identities=12%  Similarity=0.050  Sum_probs=73.3

Q ss_pred             HHHHHHHHHcCCCcEEEEECCcccchhHHHhhh--CCEEEEeCCceeecccccccccCCC--CCccchhhhhhcccCCcc
Q 029329           55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALA--CDLRICGEAALLGLPETGLAIIPGC--SDRSLSHVILASDRAGGT  130 (195)
Q Consensus        55 ~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~--~D~~va~~~a~~~~~e~~~G~~p~~--~~~~~~~~~~~~~~~g~~  130 (195)
                      ...++..+...+.|+...+.|.|.+.|..++++  +|.|++.+++++-+.+...|.....  .+-.....++...|.-..
T Consensus        71 glai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~  150 (192)
T d1y7oa1          71 GLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLE  150 (192)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            346777788899999999999999999888776  5799999999999998877654320  000111111110000011


Q ss_pred             chhhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          131 QRLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       131 ~~l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      ..+....|  .....+.+-.-..++|+||+++||||+|+.+
T Consensus       151 ~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         151 KILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            12223333  4555666666778999999999999999864

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.53  E-value=6.7e-07  Score=66.96  Aligned_cols=115  Identities=5%  Similarity=-0.084  Sum_probs=74.2

Q ss_pred             HHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccch
Q 029329           55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQR  132 (195)
Q Consensus        55 ~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~  132 (195)
                      ...++..+..++.|+...+.|.|.+.|..+++++|  .|++.++++|-+.+...|..-...+-.....++...+.-....
T Consensus        64 g~ai~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i  143 (190)
T d2f6ia1          64 GLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHY  143 (190)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777788999999999999999999999998  5999999999999887665332111110000000000001112


Q ss_pred             hhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          133 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       133 l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      +.+..|  .....+.+-.-..++|+||+++||||+|+..
T Consensus       144 ~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         144 LSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence            333333  2334445555566999999999999999864

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.46  E-value=2.7e-07  Score=69.36  Aligned_cols=112  Identities=11%  Similarity=0.068  Sum_probs=74.2

Q ss_pred             HHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCC--EEEEeCCceeecccccccccCCCCCccc--hhhhhhcccCCcc
Q 029329           55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGCSDRSL--SHVILASDRAGGT  130 (195)
Q Consensus        55 ~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D--~~va~~~a~~~~~e~~~G~~p~~~~~~~--~~~~~~~~~~g~~  130 (195)
                      ...++..+...+.|+...+.|.|.+.|..+.+++|  .|++.++++|-+.+...|..-...+-..  ...+...+|  ..
T Consensus        73 g~~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~--i~  150 (193)
T d1tg6a1          73 GLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQ--LY  150 (193)
T ss_dssp             HHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHH--HH
T ss_pred             HHHHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHH--HH
Confidence            34677778889999999999999999999999999  5999999999999887665322000000  000001110  01


Q ss_pred             chhhhhhc--HHHHHHHHHcCCCCCHHHHHhcCccceecC
Q 029329          131 QRLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP  168 (195)
Q Consensus       131 ~~l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~  168 (195)
                      ..+....|  ....++.+-.-..++|+||+++||||+|+.
T Consensus       151 ~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         151 NIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             HHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECS
T ss_pred             HHHHHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEcc
Confidence            11222222  344455554455699999999999999985

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=98.04  E-value=7.2e-05  Score=57.98  Aligned_cols=81  Identities=22%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             CCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHH
Q 029329           66 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDI  145 (195)
Q Consensus        66 ~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l  145 (195)
                      ..|+|+++.|+|.||+.....+||++++.+++.+.+.-.+                              ++     +  
T Consensus       161 ~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP~------------------------------vV-----e--  203 (253)
T d1on3a1         161 VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQ------------------------------VI-----K--  203 (253)
T ss_dssp             TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHH------------------------------HH-----H--
T ss_pred             cceEEEEEecCcccceeeccchhhheeccccceEEecCcc------------------------------hh-----h--
Confidence            5899999999999999999999999999998776653211                              11     0  


Q ss_pred             HHcCCCCCHHH-------HHhcCccceecCCChHHHHHHHHHHHHhhc
Q 029329          146 IFTGRKVSGKD-------AMSLGLVNYYVPAGQAQLKALEIAQEINQK  186 (195)
Q Consensus       146 ~l~g~~~~a~e-------A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~  186 (195)
                      ..+|+.++.+|       +.+.|.+|.+++++   +++.++++++.+.
T Consensus       204 ~~~ge~~~~eelGga~~h~~~sG~iD~v~~~e---~~a~~~~r~lls~  248 (253)
T d1on3a1         204 SVTGEDVTADELGGAEAHMAISGNIHFVAEDD---DAAELIAKKLLSF  248 (253)
T ss_dssp             HHHCCCCCHHHHHSHHHHHHTTCCCSEEESSH---HHHHHHHHHHHHT
T ss_pred             hhhCCcCChHhccCHHHhhhccccceEEECCH---HHHHHHHHHHHHh
Confidence            12355555442       34579999999885   4566667666553

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=0.0001  Score=57.41  Aligned_cols=135  Identities=19%  Similarity=0.297  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhH
Q 029329            3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL   82 (195)
Q Consensus         3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~   82 (195)
                      +.+.++.+.+.+. .+-.|.++-      |.|..+.+    ..... ............+.....|+|+++.|+|.||+.
T Consensus       118 ~Ki~~a~e~A~~~-~lPlI~~~~------sgG~r~~e----~~~sl-~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~a  185 (263)
T d2f9yb1         118 ARFVRAVEQALED-NCPLICFSA------SGGARMQE----ALMSL-MQMAKTSAALAKMQERGLPYISVLTDPTMGGVS  185 (263)
T ss_dssp             HHHHHHHHHHHHH-TCCEEEEEE------ESSBCGGG----THHHH-HHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHH
T ss_pred             hHHhHHHHHHHHc-CCCeEEEec------CCCccccc----ccchh-hcchhHHHHHHHHHhCCCceEEEecCCcchHHH
Confidence            3455666666654 334555543      22444432    11111 122333344445566789999999999999875


Q ss_pred             -HHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCC-----CHHH
Q 029329           83 -EMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKV-----SGKD  156 (195)
Q Consensus        83 -~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~-----~a~e  156 (195)
                       .+++++|++++.+.+.+++.-.+                              +     .+  ..+|+.+     +++-
T Consensus       186 a~~~~~~d~i~~~~~s~i~~aGP~------------------------------v-----ve--~~~ge~~~e~~g~a~~  228 (263)
T d2f9yb1         186 ASFAMLGDLNIAEPKALIGFAGPR------------------------------V-----IE--QTVREKLPPGFQRSEF  228 (263)
T ss_dssp             TTGGGCCSEEEECTTCBEESSCHH------------------------------H-----HH--HHHTSCCCTTTTBHHH
T ss_pred             hhhhhcCceEeeecceeeeccCHH------------------------------H-----Hh--hhcCCcCChhhccHHH
Confidence             57888888888888776653321                              1     11  0223333     2444


Q ss_pred             HHhcCccceecCCChHHHHHHHHHHHHhhc
Q 029329          157 AMSLGLVNYYVPAGQAQLKALEIAQEINQK  186 (195)
Q Consensus       157 A~~~Glvd~v~~~~~~~~~a~~~a~~~~~~  186 (195)
                      ..+.|+||.++++++..++..++.+-+...
T Consensus       229 ~~~~G~iD~vv~~ee~~~~l~~~l~~L~~~  258 (263)
T d2f9yb1         229 LIEKGAIDMIVRRPEMRLKLASILAKLMNL  258 (263)
T ss_dssp             HGGGTCCSEECCHHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCCCEEECCHHHHHHHHHHHHHHhhC
Confidence            457899999998766555554555555443

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=0.00041  Score=53.54  Aligned_cols=83  Identities=20%  Similarity=0.311  Sum_probs=58.6

Q ss_pred             cCCCcEEEEECCcccchhHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHH
Q 029329           64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVA  142 (195)
Q Consensus        64 ~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a  142 (195)
                      .-..|+|+++.|+|.||+......||++|+.++ +.+.+.       ++                       +++     
T Consensus       156 s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a-------Gp-----------------------~vv-----  200 (251)
T d1vrga1         156 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT-------GP-----------------------NVI-----  200 (251)
T ss_dssp             TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS-------CH-----------------------HHH-----
T ss_pred             CCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec-------Cc-----------------------hhh-----
Confidence            457999999999999999999999999998765 333221       11                       111     


Q ss_pred             HHHHHcCCCCCHHHH-------HhcCccceecCCChHHHHHHHHHHHHhhc
Q 029329          143 KDIIFTGRKVSGKDA-------MSLGLVNYYVPAGQAQLKALEIAQEINQK  186 (195)
Q Consensus       143 ~~l~l~g~~~~a~eA-------~~~Glvd~v~~~~~~~~~a~~~a~~~~~~  186 (195)
                      .  ..+|+.++.+|.       .+-|.+|.+++++   +++.+.++++.+.
T Consensus       201 ~--~~~ge~~~~eelGga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs~  246 (251)
T d1vrga1         201 K--AVTGEEISQEDLGGAMVHNQKSGNAHFLADND---EKAMSLVRTLLSY  246 (251)
T ss_dssp             H--HHHCCCCCHHHHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHTT
T ss_pred             h--hhcCCcCChHHccchhhhhhccccceEEECCH---HHHHHHHHHHHHh
Confidence            1  145777887664       4569999999875   4566666666553

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=5.5e-05  Score=60.41  Aligned_cols=95  Identities=12%  Similarity=0.088  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCc
Q 029329           50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGG  129 (195)
Q Consensus        50 ~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~  129 (195)
                      ...+.+.+.+..+..++.|+|+.|-|.+.|||..-...+|.+++-++++++.-      .|.               +.+
T Consensus       173 g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~v~m~~~a~~svi------spE---------------g~A  231 (316)
T d2f9ya1         173 GQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVI------SPE---------------GCA  231 (316)
T ss_dssp             THHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEESS------CHH---------------HHH
T ss_pred             cHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhHHHHHhhhHHhhc------cch---------------hhh
Confidence            34567778888899999999999999999999999999999999999999732      222               212


Q ss_pred             cchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCccceecCC
Q 029329          130 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA  169 (195)
Q Consensus       130 ~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glvd~v~~~  169 (195)
                      ...+...--...+.+    ...+++++.+++|+||+|+|.
T Consensus       232 sILwkd~~~a~eaAe----alklta~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         232 SILWKSADKAPLAAE----AMGIIRPRLKELKLIDSIIPE  267 (316)
T ss_dssp             HHHSSCSTTHHHHHH----HHTCSHHHHHTTTSCSCCCCC
T ss_pred             hHhhccchhhcchHH----HHhhhhHHHHHcCchhhcccC
Confidence            222221111222222    236889999999999999964

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.69  E-value=0.00034  Score=54.21  Aligned_cols=82  Identities=17%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             cCCCcEEEEECCcccchhHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHH
Q 029329           64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVA  142 (195)
Q Consensus        64 ~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a  142 (195)
                      .-..|+|+++.|+|.||+......||++|+.++ +.+.+.-.                              +++     
T Consensus       158 s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP------------------------------~vv-----  202 (258)
T d1xnya1         158 SGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP------------------------------DVI-----  202 (258)
T ss_dssp             TTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCH------------------------------HHH-----
T ss_pred             cCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCH------------------------------HHH-----
Confidence            346899999999999999999999999888764 55543221                              111     


Q ss_pred             HHHHHcCCCCCHHHH-------HhcCccceecCCChHHHHHHHHHHHHhh
Q 029329          143 KDIIFTGRKVSGKDA-------MSLGLVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       143 ~~l~l~g~~~~a~eA-------~~~Glvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                      +  ..+|+.++.+|+       ..-|++|.+++++   +++.+.++++.+
T Consensus       203 ~--~~~ge~i~~eelgga~~h~~~sG~~d~v~~de---~ea~~~~r~~Ls  247 (258)
T d1xnya1         203 K--TVTGEDVGFEELGGARTHNSTSGVAHHMAGDE---KDAVEYVKQLLS  247 (258)
T ss_dssp             H--HHHCCCCCHHHHHBHHHHHHTSSCCSEEESSH---HHHHHHHHHHHH
T ss_pred             H--HHhcCccChHHhccHHHHHhcCCeeEEEeCCH---HHHHHHHHHHHH
Confidence            1  245677777664       4569999999864   445555554443

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=0.00057  Score=52.91  Aligned_cols=83  Identities=24%  Similarity=0.314  Sum_probs=56.7

Q ss_pred             HcCCCcEEEEECCcccchhHHHhhhCCEEEEeCC-ceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHH
Q 029329           63 EALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSV  141 (195)
Q Consensus        63 ~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~-a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~  141 (195)
                      ..-..|+|+++.|+|.||+......||++|+.++ +.+.+.-                                   +..
T Consensus       158 ~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~aG-----------------------------------P~v  202 (258)
T d2a7sa1         158 ASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITG-----------------------------------PDV  202 (258)
T ss_dssp             HTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSSC-----------------------------------HHH
T ss_pred             HcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEccC-----------------------------------hhH
Confidence            3467999999999999999999999999998654 4443321                                   111


Q ss_pred             HHHHHHcCCCCCHHHH-------HhcCccceecCCChHHHHHHHHHHHHhh
Q 029329          142 AKDIIFTGRKVSGKDA-------MSLGLVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       142 a~~l~l~g~~~~a~eA-------~~~Glvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                      .+  ..+|+.++.+|.       .+.|.+|.+++++   +++.+.++++.+
T Consensus       203 V~--~~~ge~~~~eeLGga~~h~~~sG~~D~v~~de---~~a~~~~r~~Ls  248 (258)
T d2a7sa1         203 IK--TVTGEEVTMEELGGAHTHMAKSGTAHYAASGE---QDAFDYVRELLS  248 (258)
T ss_dssp             HH--HHHCCCCCHHHHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHH
T ss_pred             HH--HhcCCccChhhccCHhHhhhhccccceEeCCH---HHHHHHHHHHHH
Confidence            11  146777776643       4679999999864   344555555444

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.62  E-value=0.0001  Score=58.21  Aligned_cols=100  Identities=21%  Similarity=0.187  Sum_probs=62.3

Q ss_pred             HHHHcCCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeeccccc--ccccCCCCCccchhhhhhcccCCccchhhhhh
Q 029329           60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETG--LAIIPGCSDRSLSHVILASDRAGGTQRLPRLV  137 (195)
Q Consensus        60 ~~~~~~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~e~~--~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~i  137 (195)
                      .++.....|+|++|.|.|.|||...+++||++++.+++.+.+.-..  -+..+.               .+        +
T Consensus       174 a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~---------------~~--------~  230 (287)
T d1pixa2         174 AELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPK---------------GH--------V  230 (287)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSS---------------SS--------C
T ss_pred             HHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchh---------------hh--------h
Confidence            3455678999999999999999888888888888888877663322  122222               11        1


Q ss_pred             cHHHHHHH-HH-----cCCCCCHHHHH--hcCccceecCCChHHHHHHHHHHHHhh
Q 029329          138 GKSVAKDI-IF-----TGRKVSGKDAM--SLGLVNYYVPAGQAQLKALEIAQEINQ  185 (195)
Q Consensus       138 g~~~a~~l-~l-----~g~~~~a~eA~--~~Glvd~v~~~~~~~~~a~~~a~~~~~  185 (195)
                      ....+.++ ..     +-+.+-+.+.+  .-|.+|.++++|   +++.+.++++.+
T Consensus       231 ~~~~~~ei~~~~ge~~~~eeLGGa~~H~~~sG~~d~v~~~e---~~ai~~~r~~ls  283 (287)
T d1pixa2         231 DLEYANEIADMVDRTGKTEPPGAVDIHYTETGFMREVYASE---EGVLEGIKKYVG  283 (287)
T ss_dssp             CHHHHHHHHHHHHTTCCCCCSSBHHHHTTTSCCSCEEESSH---HHHHHHHHHHHH
T ss_pred             hhhhHHHHHhhhcccccccccccHHHhhhhcccceeecCCH---HHHHHHHHHHHh
Confidence            11111111 12     33445555443  569999999875   456666666554

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.60  E-value=0.011  Score=45.69  Aligned_cols=150  Identities=17%  Similarity=0.195  Sum_probs=83.7

Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHh
Q 029329            6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA   85 (195)
Q Consensus         6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la   85 (195)
                      .+.++..++. ++=.|.+.-.  ..|..|.+-         +.....+...+++..+..+..|.|+.+-|.++|+|....
T Consensus        95 ~rfi~lc~~~-~iPlv~l~dt--pGf~~G~~~---------E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am  162 (271)
T d2a7sa2          95 ARFVRTCDCF-NIPIVMLVDV--PGFLPGTDQ---------EYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVM  162 (271)
T ss_dssp             HHHHHHHHHT-TCCEEEEEEE--CCBCCCHHH---------HHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHT
T ss_pred             HHHHHHHHHh-CCceEEeech--hhhhhhccH---------HHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhh
Confidence            3444444443 4555555443  235555432         233456778889999999999999999999999875543


Q ss_pred             h----hCCEEEEeCCceeeccccc--ccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHh
Q 029329           86 L----ACDLRICGEAALLGLPETG--LAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS  159 (195)
Q Consensus        86 ~----~~D~~va~~~a~~~~~e~~--~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~  159 (195)
                      +    .+|++++.++++++.-...  ..+.-..   .+   ... .+.+.  .... .-.....+  ..-+.-++-.+.+
T Consensus       163 ~~~~~~~d~~~AwP~A~igvMgpegaa~v~~~~---~l---~~~-~~~~~--~~~~-~~~~~~~e--~~e~~~~p~~aa~  230 (271)
T d2a7sa2         163 GSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQ---QL---AEA-AANGE--DIDK-LRLRLQQE--YEDTLVNPYVAAE  230 (271)
T ss_dssp             TCGGGTCSEEEECTTCEEESSCHHHHHHHHTTT---TT---TGG-GTSSC--CTTS-STTHHHHH--HHTTTSBSHHHHH
T ss_pred             cccccccceEEEecceeEeecCHHHHHHHHHHH---hh---hhh-hhccc--chHH-HHHHHHHH--HHHHhcCHHHHHH
Confidence            3    4799999999988763322  1111100   00   000 00000  0000 00011111  1223345678888


Q ss_pred             cCccceecCCChHHHHHHHH
Q 029329          160 LGLVNYYVPAGQAQLKALEI  179 (195)
Q Consensus       160 ~Glvd~v~~~~~~~~~a~~~  179 (195)
                      .|++|.|+++.+..+.....
T Consensus       231 ~g~iD~VIdP~dTR~~L~~~  250 (271)
T d2a7sa2         231 RGYVDAVIPPSHTRGYIGTA  250 (271)
T ss_dssp             HTSSSEECCGGGHHHHHHHH
T ss_pred             cCCCCeeECHHHHHHHHHHH
Confidence            99999999997765544433

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.0067  Score=46.79  Aligned_cols=114  Identities=13%  Similarity=0.095  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhh----hCCEEEEeCCceeecccccccccCCCCCccchhhhhhc
Q 029329           49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS  124 (195)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~----~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~  124 (195)
                      ....+...+++..+.++..|.|..+-|.++|+|..-.+    .+|++++-+++.++.-...-+.                
T Consensus       123 ~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm~pe~aa----------------  186 (264)
T d1vrga2         123 GGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAA----------------  186 (264)
T ss_dssp             TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHH----------------
T ss_pred             HhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEecCHHHhh----------------
Confidence            34567788899999999999999999999998874443    5899999888887664322111                


Q ss_pred             ccCCccchhhhhh---c--HHHHHHH--HHcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHH
Q 029329          125 DRAGGTQRLPRLV---G--KSVAKDI--IFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI  183 (195)
Q Consensus       125 ~~~g~~~~l~~~i---g--~~~a~~l--~l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~  183 (195)
                           .....+.+   .  .....++  ...-+.-++-.+.+.|++|.|+++.+......+..+.+
T Consensus       187 -----~v~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~l  247 (264)
T d1vrga2         187 -----NIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVC  247 (264)
T ss_dssp             -----HHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred             -----hhhhhhhhhhhhCcHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence                 00000100   0  0000110  00112235778889999999999988766555544433

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.27  E-value=0.0039  Score=48.19  Aligned_cols=113  Identities=13%  Similarity=0.094  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhh----hCCEEEEeCCceeecccccccccCCCCCccchhhhhhc
Q 029329           49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILAS  124 (195)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~----~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~  124 (195)
                      ....+...+++..+.++..|.|+.+-|.++|+|..-.+    ..|++++.+++.++.-       ++             
T Consensus       123 ~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~vM-------g~-------------  182 (264)
T d1on3a2         123 GGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVM-------GA-------------  182 (264)
T ss_dssp             TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESS-------CH-------------
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhhc-------cH-------------
Confidence            34567788899999999999999999999998865544    3677777777766543       22             


Q ss_pred             ccCCccchh-hhhh----c--HHHHHHHH-HcCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHH
Q 029329          125 DRAGGTQRL-PRLV----G--KSVAKDII-FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI  183 (195)
Q Consensus       125 ~~~g~~~~l-~~~i----g--~~~a~~l~-l~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~  183 (195)
                        .++...+ .+.+    .  ......+. ..-+.-++-.+.+.|.||.|+++.+..+......+.+
T Consensus       183 --Egaa~v~~~~el~a~~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~  247 (264)
T d1on3a2         183 --EGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMY  247 (264)
T ss_dssp             --HHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHG
T ss_pred             --HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence              1111111 1111    0  00011010 0111234677888999999999987665544444443

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.27  E-value=0.015  Score=44.62  Aligned_cols=153  Identities=14%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhh
Q 029329            7 HAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL   86 (195)
Q Consensus         7 ~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~   86 (195)
                      +.++.+++. ++=.|.+.-.  ..|-.|.+-         +.....+...+++..+.++..|.|+.+-|.++|+|....+
T Consensus        91 ~fi~lc~~~-~iPli~l~d~--pGf~~G~~~---------E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~  158 (263)
T d1xnya2          91 RFVRTCDAF-NVPVLTFVDV--PGFLPGVDQ---------EHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMG  158 (263)
T ss_dssp             HHHHHHHHT-TCCEEEEEEE--CCBCCCHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTT
T ss_pred             HHHHHHHHh-CCceEEeecc--cccccchhH---------HHHhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccC
Confidence            344444443 4455555433  235555432         2334567788899999999999999999999998876543


Q ss_pred             ----hCCEEEEeCCceeecccccccccCCCCCccchhhhhhcccCCccchhhhhhcHHHHHHHHHcCCCCCHHHHHhcCc
Q 029329           87 ----ACDLRICGEAALLGLPETGLAIIPGCSDRSLSHVILASDRAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGL  162 (195)
Q Consensus        87 ----~~D~~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~~~~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Gl  162 (195)
                          ..|++++.+++.++.-...-+.--       .|.....+.........    .....+...  ...++..+...|.
T Consensus       159 ~~~~~~d~~~awP~a~~gvm~pe~aa~i-------l~~~~~~~a~~~~~~~~----~~~~~~~~~--~~~~p~~aA~~g~  225 (263)
T d1xnya2         159 SKHLGADLNLAWPTAQIAVMGAQGAVNI-------LHRRTIADAGDDAEATR----ARLIQEYED--ALLNPYTAAERGY  225 (263)
T ss_dssp             CGGGTCSEEEECTTCEEESSCHHHHHHH-------HTHHHHHSCCTTCSSSH----HHHHHHHHH--HHSSSHHHHHHTS
T ss_pred             CcccCCcEEEEcchhhhhccCHHHHHHH-------HHHHHHhhhccchHHHH----HHHHHHHHH--HhcCHHHHHHccc
Confidence                469999999988876443211100       00000000000000000    111111110  1234667788899


Q ss_pred             cceecCCChHHHHHHHHHHHHh
Q 029329          163 VNYYVPAGQAQLKALEIAQEIN  184 (195)
Q Consensus       163 vd~v~~~~~~~~~a~~~a~~~~  184 (195)
                      +|.|+++.+..+...+..+.+.
T Consensus       226 iD~VIdP~dTR~~L~~~L~~l~  247 (263)
T d1xnya2         226 VDAVIMPSDTRRHIVRGLRQLR  247 (263)
T ss_dssp             SSEECCGGGHHHHHHHHHHHHT
T ss_pred             CCcccCHHHHHHHHHHHHHHHh
Confidence            9999999887765555555443

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.63  E-value=0.026  Score=44.09  Aligned_cols=115  Identities=16%  Similarity=0.092  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEECCcccchhHHHhhh----CCE--EEEeCCceeecccccccccCCCCCccchhhhhh
Q 029329           50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----CDL--RICGEAALLGLPETGLAIIPGCSDRSLSHVILA  123 (195)
Q Consensus        50 ~~~~~~~~~~~~~~~~~kp~Iaav~G~a~ggG~~la~~----~D~--~va~~~a~~~~~e~~~G~~p~~~~~~~~~~~~~  123 (195)
                      ...+...+++..+.++..|.|+.+-|.++|+|....+.    .|+  .++.+++.+       |+.++            
T Consensus       140 g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~~~~~~~~~~awP~aei-------gvMg~------------  200 (299)
T d1pixa3         140 ELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEI-------AVMNG------------  200 (299)
T ss_dssp             THHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTTCTTTEEEEEECTTCEE-------ESSCH------------
T ss_pred             hHHHHHHHHHHHHHhhcceeEEEEecccccccccccccCccCcccceecCCCcccc-------ccccc------------
Confidence            35677788888999999999999999999998665443    243  334444444       44332            


Q ss_pred             cccCCccch-hhhhhcH------------HHHHHHHH-cCCCCCHHHHHhcCccceecCCChHHHHHHHHHHHHhhc
Q 029329          124 SDRAGGTQR-LPRLVGK------------SVAKDIIF-TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK  186 (195)
Q Consensus       124 ~~~~g~~~~-l~~~ig~------------~~a~~l~l-~g~~~~a~eA~~~Glvd~v~~~~~~~~~a~~~a~~~~~~  186 (195)
                         .++... +.+.+..            ...+++.- .-+.-++-.+.+.|+||.|+++.+..+......+.+.++
T Consensus       201 ---E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~  274 (299)
T d1pixa3         201 ---ETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQN  274 (299)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTS
T ss_pred             ---hhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhC
Confidence               111111 1111110            00111110 012346778889999999999988776666655555443

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.006  Score=48.50  Aligned_cols=38  Identities=21%  Similarity=0.113  Sum_probs=34.1

Q ss_pred             CCCcEEEEECCcccchhHHHhhhCCEEEEeCCceeecc
Q 029329           65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLP  102 (195)
Q Consensus        65 ~~kp~Iaav~G~a~ggG~~la~~~D~~va~~~a~~~~~  102 (195)
                      -..|+|+++.|.|+|+|..++..||++|+.+++.+.+.
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt  276 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT  276 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee
Confidence            47999999999999999999999999999998766543

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.06  E-value=0.27  Score=39.50  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=53.7

Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEE--CCcccchhH
Q 029329            5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI--DGAALGGGL   82 (195)
Q Consensus         5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav--~G~a~ggG~   82 (195)
                      -.+++..+.+.-++-.|++.-  -+.|+.|.+-.         .....+....++..+.++..|+|..|  .|...||++
T Consensus       118 ~A~~i~d~cd~~~lPLi~l~D--~pGF~~G~~~E---------~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~GGa~  186 (404)
T d1uyra2         118 TAQAINDFNNGEQLPMMILAN--WRGFSGGQRDM---------FNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSW  186 (404)
T ss_dssp             HHHHHHHHHTTSCCCEEECCC--CCCBCC---------------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHH
T ss_pred             HHHHHHHhhhccccceEEeec--CCcccCcHHHH---------HHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccchhhh
Confidence            345565565555677776643  35688877432         22346677888899999999999999  577777655


Q ss_pred             HHhh---hCC--EEEEeCCceeeccc
Q 029329           83 EMAL---ACD--LRICGEAALLGLPE  103 (195)
Q Consensus        83 ~la~---~~D--~~va~~~a~~~~~e  103 (195)
                      .+.-   ..|  +++|-++++++.-+
T Consensus       187 vv~~~~~~~~~~~~yAwP~a~~gVm~  212 (404)
T d1uyra2         187 VVVDPTINADQMEMYADVNARAGVLE  212 (404)
T ss_dssp             HTTCGGGGTTTEEEEEETTCEEESSC
T ss_pred             hcccCccCCccceEEECCccccccCC
Confidence            4432   122  25677777766543

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.78  E-value=0.88  Score=31.63  Aligned_cols=52  Identities=10%  Similarity=0.125  Sum_probs=35.0

Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCceEeccCcchhhcCChhhHHHHHHHHHHHHHHHHcCCCcEEEEECCccc
Q 029329            5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL   78 (195)
Q Consensus         5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~a~   78 (195)
                      +.+.|+.+.+||++++|++...+.+      |-               +.+.+..++.. ..||+|+..-|...
T Consensus        61 ~~d~l~~l~~D~~t~~i~l~~E~~~------~~---------------~~f~~~~r~~~-~~Kpvv~~k~G~s~  112 (161)
T d2csua2          61 FAELMEYLADTEEDKAIALYIEGVR------NG---------------KKFMEVAKRVT-KKKPIIALKAGKSE  112 (161)
T ss_dssp             HHHHHHHHTTCSSCCEEEEEESCCS------CH---------------HHHHHHHHHHH-HHSCEEEEECC---
T ss_pred             HHHHHHHHhcCCCCcEEEEEecCCc------CH---------------HHHHHHHHHHh-ccCCeeEEEeeccc
Confidence            5788999999999999999997432      22               12334444443 35999999888764