Citrus Sinensis ID: 029344

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
MADHSTVNGSEIPVYNLKCIDLANPDVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLAADTVKDNKAV
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccEEEccccccEEEEEccccccccEEEcccccccccccccccccccccccEEEEEEcccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccEcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccEEEEEccccccccEEEEccccccccEccEEEEEEEccccEEEEEEEccccccEEcccHHccccccccccccccHHHHHHHHHHHcccccccccccc
madhstvngseipvynlkcidlanpdvHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQViqdnnfssnppphcdlnfiTLLATDEIWGLQIcreknaqpqlweaippvkgngafrSILHRVVFGkerystglflcpshdyvieclptcksednppkyptiktgDYILSRFRQLAAdtvkdnkav
madhstvngseipvYNLKCIDLANPDVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDYVIECLPtcksednppkypTIKTGDYILSRFRQLaadtvkdnkav
MADHSTVNGSEIPVYNLKCIDLANPDVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLAADTVKDNKAV
**********EIPVYNLKCIDLANPDVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDYVIECLPTCKS*****KYPTIKTGDYILSRFRQLA**********
******VNGSEIPVYNLKCIDLANPDVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLAADT*******
********GSEIPVYNLKCIDLANPDVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLAAD********
*********SEIPVYNLKCIDLANPDVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLA**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADHSTVNGSEIPVYNLKCIDLANPDVHQSAAVLKQILGRRIILVLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKGNGAFRSILHRVVFGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLAADTVKDNKAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query194 2.2.26 [Sep-21-2011]
O04395291 Flavonol synthase/flavano N/A no 0.675 0.450 0.275 1e-09
O49561338 Gibberellin 2-beta-dioxyg no no 0.479 0.275 0.32 2e-09
Q96330336 Flavonol synthase/flavano no no 0.525 0.303 0.317 2e-08
Q07512348 Flavonol synthase/flavano N/A no 0.5 0.278 0.296 3e-08
Q0JH50389 Gibberellin 20 oxidase 2 no no 0.510 0.254 0.308 4e-08
P0C5H5389 Gibberellin 20 oxidase 2 N/A no 0.510 0.254 0.308 4e-08
Q40061338 Mugineic-acid 3-dioxygena N/A no 0.685 0.393 0.256 5e-08
Q9XHG2337 Flavonol synthase/flavano N/A no 0.5 0.287 0.305 2e-07
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.5 0.289 0.305 4e-07
Q9M547334 Flavonol synthase/flavano N/A no 0.5 0.290 0.296 8e-07
>sp|O04395|FLS_MATIN Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1 Back     alignment and function desciption
 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 29/160 (18%)

Query: 45  VLMWLKMIQIVESFSMARIFGLQQVIQDNNFSSNP--------PPHCDLNFITLLATDEI 96
           ++ WL     +   ++  + G   V+  N++   P         PH D+N +TL+ T+EI
Sbjct: 130 IMEWLSEGLGLGREAIKEVNGCWYVMNINHYPPYPHSDSFNGLEPHTDINGLTLIITNEI 189

Query: 97  WGLQICREKNAQPQLW---EAIPP-----------VKGNGAFRSILHRVVFGKE--RYST 140
            GLQ+ ++ +     W   E IP            +  NG ++++LH+    KE  R S 
Sbjct: 190 PGLQVFKDDH-----WIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVDKEKTRMSW 244

Query: 141 GLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRF 180
            + + P++D V+  LP   SED+PPK+  I   DY+ ++ 
Sbjct: 245 PVLVSPTYDMVVGPLPELTSEDDPPKFKPIAYKDYVHNKI 284
Catalyzes the formation of flavonols from dihydroflavonols. It can act on dihydrokaempferol to produce kaempferol, on dihydroquercetin to produce quercitin and on dihydromyricetin to produce myricetin.
Matthiola incana (taxid: 3724)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 9
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function description
>sp|Q96330|FLS1_ARATH Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|Q0JH50|GAOX2_ORYSJ Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|Q40061|IDS2_HORVU Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XHG2|FLS_MALDO Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
223944829 329 unknown [Zea mays] gi|413947624|gb|AFW80 0.855 0.504 0.417 8e-31
212723792 334 iron ion binding protein [Zea mays] gi|1 0.850 0.494 0.415 2e-30
413947621286 hypothetical protein ZEAMMB73_441487 [Ze 0.850 0.576 0.415 3e-30
242056115 334 hypothetical protein SORBIDRAFT_03g00324 0.541 0.314 0.533 2e-28
168044474 334 predicted protein [Physcomitrella patens 0.572 0.332 0.507 4e-28
125569334 301 hypothetical protein OsJ_00688 [Oryza sa 0.577 0.372 0.511 4e-28
125524725 334 hypothetical protein OsI_00710 [Oryza sa 0.577 0.335 0.511 8e-28
55771331 334 putative oxidoreductase [Oryza sativa Ja 0.577 0.335 0.511 8e-28
357125936 334 PREDICTED: probable iron/ascorbate oxido 0.577 0.335 0.503 2e-27
297815808253 oxidoreductase [Arabidopsis lyrata subsp 0.577 0.442 0.472 4e-27
>gi|223944829|gb|ACN26498.1| unknown [Zea mays] gi|413947624|gb|AFW80273.1| hypothetical protein ZEAMMB73_441487 [Zea mays] Back     alignment and taxonomy information
 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 106/189 (56%), Gaps = 23/189 (12%)

Query: 28  HQSAAVLKQILGRRIILVL-----MWLKMIQIVESFSMARIFGLQQVIQD-NNFSSNPPP 81
           H+ A ++ + + R I L L      + +   + ES +  R+   +  + D          
Sbjct: 141 HREALIVAKSVARIIALALDLDVDFFDRPEMLGESIATLRLLHYEGKVSDPAKGVYGAGA 200

Query: 82  HCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKG--------------NGAFRSI 127
           H D   ITLLATD++ GLQIC++KNAQPQLWE + P+KG              NG FRS 
Sbjct: 201 HSDYGLITLLATDDVVGLQICKDKNAQPQLWEYVAPLKGGFIVNLGDMLERWSNGVFRST 260

Query: 128 LHRVVF-GKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLAAD 186
           LHRVV  G+ERYS   F+ PSHD V+ECLPTCKSE NPPK+P I    Y+  R++   AD
Sbjct: 261 LHRVVLDGRERYSIAYFVEPSHDCVVECLPTCKSESNPPKFPPITCSAYLSQRYKDTHAD 320

Query: 187 --TVKDNKA 193
             +  D+KA
Sbjct: 321 LKSYDDSKA 329

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|212723792|ref|NP_001131262.1| iron ion binding protein [Zea mays] gi|194691022|gb|ACF79595.1| unknown [Zea mays] gi|195650981|gb|ACG44958.1| iron ion binding protein [Zea mays] gi|413947623|gb|AFW80272.1| iron ion binding protein [Zea mays] Back     alignment and taxonomy information
>gi|413947621|gb|AFW80270.1| hypothetical protein ZEAMMB73_441487 [Zea mays] Back     alignment and taxonomy information
>gi|242056115|ref|XP_002457203.1| hypothetical protein SORBIDRAFT_03g003240 [Sorghum bicolor] gi|241929178|gb|EES02323.1| hypothetical protein SORBIDRAFT_03g003240 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|168044474|ref|XP_001774706.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674006|gb|EDQ60521.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|125569334|gb|EAZ10849.1| hypothetical protein OsJ_00688 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125524725|gb|EAY72839.1| hypothetical protein OsI_00710 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|55771331|dbj|BAD72256.1| putative oxidoreductase [Oryza sativa Japonica Group] gi|55771340|dbj|BAD72265.1| putative oxidoreductase [Oryza sativa Japonica Group] gi|215769391|dbj|BAH01620.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357125936|ref|XP_003564645.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|297815808|ref|XP_002875787.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297321625|gb|EFH52046.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
TAIR|locus:2203325329 AT1G35190 [Arabidopsis thalian 0.541 0.319 0.491 1.8e-31
TAIR|locus:2075125330 AT3G46490 [Arabidopsis thalian 0.536 0.315 0.487 1.8e-31
TAIR|locus:2078241286 AT3G46480 [Arabidopsis thalian 0.520 0.353 0.465 3.8e-31
TAIR|locus:2075130251 AT3G46500 [Arabidopsis thalian 0.546 0.422 0.462 1.4e-25
TAIR|locus:504955434247 AT4G16765 [Arabidopsis thalian 0.587 0.461 0.441 1.3e-22
ASPGD|ASPL0000035942349 AN11188 [Emericella nidulans ( 0.561 0.312 0.320 1.1e-10
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.541 0.300 0.351 2.5e-10
TAIR|locus:2159542336 FLS1 "flavonol synthase 1" [Ar 0.546 0.315 0.319 1.8e-07
TAIR|locus:2127403338 GA2OX8 "gibberellin 2-oxidase 0.505 0.289 0.333 1.9e-07
TAIR|locus:2085864352 AT3G19000 [Arabidopsis thalian 0.541 0.298 0.320 5.9e-07
TAIR|locus:2203325 AT1G35190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 294 (108.6 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
 Identities = 59/120 (49%), Positives = 76/120 (63%)

Query:    82 HCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKG--------------NGAFRSI 127
             H D   +TLLATD + GLQIC++KNA PQ WE +PP+KG              NG F+S 
Sbjct:   202 HSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKST 261

Query:   128 LHRVVF-GKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLAAD 186
             LHRV+  G+ERYS   F+ P+HD ++ECLPTCKSE   PKYP IK   Y+  R+ +  A+
Sbjct:   262 LHRVLGNGQERYSIPFFVEPNHDCLVECLPTCKSESELPKYPPIKCSTYLTQRYEETHAN 321
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009821 "alkaloid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2075125 AT3G46490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078241 AT3G46480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075130 AT3G46500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955434 AT4G16765 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159542 FLS1 "flavonol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127403 GA2OX8 "gibberellin 2-oxidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085864 AT3G19000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb03g003240.1
hypothetical protein (334 aa)
(Sorghum bicolor)
Predicted Functional Partners:
Sb03g013730.1
hypothetical protein (315 aa)
  •     0.481
Sb07g020390.1
hypothetical protein (265 aa)
  •     0.403

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 2e-34
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-24
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-14
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-14
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-11
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-10
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-10
PLN02997325 PLN02997, PLN02997, flavonol synthase 4e-10
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-09
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-07
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-07
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 3e-07
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-07
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-07
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 7e-07
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 8e-07
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-04
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-04
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-04
PLN02216357 PLN02216, PLN02216, protein SRG1 0.003
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 0.003
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 0.004
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  124 bits (311), Expect = 2e-34
 Identities = 59/119 (49%), Positives = 76/119 (63%), Gaps = 15/119 (12%)

Query: 82  HCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKG--------------NGAFRSI 127
           H D   +TLLATD + GLQIC++KNA PQ WE +PP+KG              NG F+S 
Sbjct: 205 HSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKST 264

Query: 128 LHRVV-FGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQLAA 185
           LHRV+  G+ERYS   F+ P+HD ++ECLPTCKSE + PKYP IK   Y+  R+ +  A
Sbjct: 265 LHRVLGNGQERYSIPFFVEPNHDCLVECLPTCKSESDLPKYPPIKCSTYLTQRYEETHA 323

Length = 332
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 194
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02997325 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02485329 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02904357 oxidoreductase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.6
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 97.04
PLN03176120 flavanone-3-hydroxylase; Provisional 96.73
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 91.53
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 83.22
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 82.64
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=7e-45  Score=321.93  Aligned_cols=187  Identities=44%  Similarity=0.745  Sum_probs=160.8

Q ss_pred             CCCCCCCCCCCCCCccceeeeCCCCChhHHHHHHH--------------------------HhhchhhhhhhHHHHHH--
Q 029344            1 MADHSTVNGSEIPVYNLKCIDLANPDVHQSAAVLK--------------------------QILGRRIILVLMWLKMI--   52 (194)
Q Consensus         1 ~~~~~~~~~s~~~~~~~p~idl~~~~~~~~a~~l~--------------------------~s~~~~fF~lp~~~k~~--   52 (194)
                      |++|..  +|.+..-.||+|||+..+...++++|+                          +++  +||+||+|+||+  
T Consensus         1 ~~~~~~--~~~~~~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~--~FF~LP~e~K~k~~   76 (332)
T PLN03002          1 MENHTK--DSTMKVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSK--KFFALPLEEKMKVL   76 (332)
T ss_pred             CCcccc--cccCCCCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHH--HHHcCCHHHHHhhc
Confidence            777876  344555579999998776667777776                          567  999999999985  


Q ss_pred             ------------------------hH------------------------------------------------HHHHHH
Q 029344           53 ------------------------QI------------------------------------------------VESFSM   60 (194)
Q Consensus        53 ------------------------~~------------------------------------------------ke~~~l   60 (194)
                                              |.                                                +.+.+|
T Consensus        77 ~~~~~~GY~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~l  156 (332)
T PLN03002         77 RNEKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAI  156 (332)
T ss_pred             cCCCCCCcCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHH
Confidence                                    01                                                223899


Q ss_pred             HHHHHhhCCCCCCccc---------------------------cCCCCccCCCceeEEecCCCCCccccccCCCCCCcEE
Q 029344           61 ARIFGLQQVIQDNNFS---------------------------SNPPPHCDLNFITLLATDEIWGLQICREKNAQPQLWE  113 (194)
Q Consensus        61 l~~la~~Lgl~~~~f~---------------------------~g~~~HtD~g~iTlL~qd~v~GLQV~~~~g~~~~~W~  113 (194)
                      |++||++|||++++|.                           +|+++|||+|+||||+||+++||||+.+++..+|+|+
T Consensus       157 l~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi  236 (332)
T PLN03002        157 AKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWE  236 (332)
T ss_pred             HHHHHHHcCCChHHhccccccCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEE
Confidence            9999999999988775                           5899999999999999999999999875322235899


Q ss_pred             EeCcCCC--------------CCeeeecccccc-cCCCcceEEeeecCCCCcEEecCCcccCCCCCCCCCCcCHHHHHHH
Q 029344          114 AIPPVKG--------------NGAFRSILHRVV-FGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILS  178 (194)
Q Consensus       114 ~V~p~~g--------------NG~~kSt~HRVv-~~~~R~SiafF~~P~~d~~I~pl~~~~~~~~p~~y~~it~~eyl~~  178 (194)
                      +|+|+||              ||+||||+|||+ ++.+|||||||++|+.|++|+|+++|+++++|++|++++++||+..
T Consensus       237 ~Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRVv~~~~~R~Sia~F~~p~~d~~i~pl~~~~~~~~p~~y~~~~~~e~l~~  316 (332)
T PLN03002        237 YVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVECLPTCKSESDLPKYPPIKCSTYLTQ  316 (332)
T ss_pred             ECCCCCCeEEEEHHHHHHHHhCCeeECcCCeecCCCCCeeEEEEEecCCCCeeEecCCcccCCCCcccCCCccHHHHHHH
Confidence            9999999              999999999999 7788999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhc
Q 029344          179 RFRQLAADTVKDN  191 (194)
Q Consensus       179 r~~~~~~~~~~~~  191 (194)
                      ++..+|.+.+.+-
T Consensus       317 ~~~~~~~~~~~~~  329 (332)
T PLN03002        317 RYEETHAKLSIYH  329 (332)
T ss_pred             HHHHHhhhhcccc
Confidence            9999998776553

>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 1e-07
1w9y_A319 The Structure Of Acc Oxidase Length = 319 8e-04
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 25/123 (20%)
Query: 82  HCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKG--------------NGAFRSI 127
           H D+N ITLL   E  GL++  +++ Q   W  I P  G              N    S 
Sbjct: 191 HGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINPPPGCLVINIGDXLERLTNNVLPST 246
Query: 128 LHRVV------FGKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYP-TIKTGDYILSRF 180
           +HRVV       G  RYST  FL  + DY I+ L  C + +NP +YP +I   +++  R 
Sbjct: 247 VHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRL 306
Query: 181 RQL 183
           R++
Sbjct: 307 REI 309
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-35
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 4e-33
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-29
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-22
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-22
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-22
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
 Score =  124 bits (314), Expect = 4e-35
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 21/119 (17%)

Query: 80  PPHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKG--------------NGAFR 125
             H D++ IT+L    +  LQ+          ++ I                   N  ++
Sbjct: 212 EWHEDVSLITVLYQSNVQNLQVETAAG-----YQDIEADDTGYLINCGSYMAHLTNNYYK 266

Query: 126 SILHRVVF-GKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYPTIKTGDYILSRFRQL 183
           + +HRV +   ER S   F+   +D VI+     +          +  GDY+ +    L
Sbjct: 267 APIHRVKWVNAERQSLPFFVNLGYDSVIDPFDPREPN-GKSDREPLSYGDYLQNGLVSL 324
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=8e-42  Score=297.83  Aligned_cols=125  Identities=32%  Similarity=0.536  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHhhCCCCCCccc------------------------cCCCCccCCCceeEEecCCCCCccccccCCCCCC
Q 029344           55 VESFSMARIFGLQQVIQDNNFS------------------------SNPPPHCDLNFITLLATDEIWGLQICREKNAQPQ  110 (194)
Q Consensus        55 ke~~~ll~~la~~Lgl~~~~f~------------------------~g~~~HtD~g~iTlL~qd~v~GLQV~~~~g~~~~  110 (194)
                      +.+.+||++||++|||++++|.                        +|+++|||+|+||||+||+++||||+..+|    
T Consensus       140 ~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g----  215 (312)
T 3oox_A          140 GMGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDG----  215 (312)
T ss_dssp             HHHHHHHHHHHHHTTSCTTTTHHHHTTCCCEEEEEEECCCSSCCC--CEEEECCCSSEEEEECCTTSCEEEECTTS----
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHhcCCcceeeeEecCCCCCCcCCcCccceecCceEEEEeEcCcCceEEECCCC----
Confidence            3459999999999999999886                        588999999999999999999999987765    


Q ss_pred             cEEEeCcCCC--------------CCeeeecccccc-c-----CCCcceEEeeecCCCCcEEecCCcccCCCCCCCCC-C
Q 029344          111 LWEAIPPVKG--------------NGAFRSILHRVV-F-----GKERYSTGLFLCPSHDYVIECLPTCKSEDNPPKYP-T  169 (194)
Q Consensus       111 ~W~~V~p~~g--------------NG~~kSt~HRVv-~-----~~~R~SiafF~~P~~d~~I~pl~~~~~~~~p~~y~-~  169 (194)
                      +|++|+|+||              ||+||||+|||+ +     +.+|||+|||++|+.|++|+|+++|+++++|++|+ +
T Consensus       216 ~W~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~  295 (312)
T 3oox_A          216 QWLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPES  295 (312)
T ss_dssp             CEEECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSC
T ss_pred             cEEECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCC
Confidence            7999999999              999999999999 4     46799999999999999999999999999999999 9


Q ss_pred             cCHHHHHHHHHHHH
Q 029344          170 IKTGDYILSRFRQL  183 (194)
Q Consensus       170 it~~eyl~~r~~~~  183 (194)
                      +|++||+..|+++.
T Consensus       296 ~t~~eyl~~r~~~~  309 (312)
T 3oox_A          296 ITADEFLQQRLREI  309 (312)
T ss_dssp             EEHHHHHHHHHHHH
T ss_pred             eeHHHHHHHHHHHh
Confidence            99999999999854
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 194
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-21
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-16
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-16
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 6e-10
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.7 bits (216), Expect = 2e-21
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 22/125 (17%)

Query: 81  PHCDLNFITLLATDEIWGLQICREKNAQPQLWEAIPPVKG--------------NGAFRS 126
            H D++ +T +  + + GLQ+  E       W     V                NG ++S
Sbjct: 230 AHTDVSALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIGDTLEILSNGKYKS 284

Query: 127 ILHRVVF--GKERYSTGLFLCPSHDYVI-ECLPTCKSEDNPPKYPTIKTGDYILSRFRQL 183
           ILHR +    K R S  +F  P  D ++ + LP   S ++P K+P      +I  +    
Sbjct: 285 ILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGK 344

Query: 184 AADTV 188
             + +
Sbjct: 345 EQEEL 349
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.97
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.5e-42  Score=297.26  Aligned_cols=121  Identities=24%  Similarity=0.390  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhhCCCCCCccc---------------------------cCCCCccCCCceeEEecCCCCCccccccCCC
Q 029344           55 VESFSMARIFGLQQVIQDNNFS---------------------------SNPPPHCDLNFITLLATDEIWGLQICREKNA  107 (194)
Q Consensus        55 ke~~~ll~~la~~Lgl~~~~f~---------------------------~g~~~HtD~g~iTlL~qd~v~GLQV~~~~g~  107 (194)
                      +.+.+||+++|++||+++++|.                           +|+++|||+|+||||+||.++||||+.+ | 
T Consensus       177 ~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~GLqv~~~-g-  254 (349)
T d1gp6a_         177 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYE-G-  254 (349)
T ss_dssp             HHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEEEET-T-
T ss_pred             HHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEeccCCcceeeecC-C-
Confidence            4469999999999999999875                           6999999999999999999999999764 3 


Q ss_pred             CCCcEEEeCcCCC--------------CCeeeecccccc-c-CCCcceEEeeecCCCCcEE-ecCCcccCCCCCCCCCCc
Q 029344          108 QPQLWEAIPPVKG--------------NGAFRSILHRVV-F-GKERYSTGLFLCPSHDYVI-ECLPTCKSEDNPPKYPTI  170 (194)
Q Consensus       108 ~~~~W~~V~p~~g--------------NG~~kSt~HRVv-~-~~~R~SiafF~~P~~d~~I-~pl~~~~~~~~p~~y~~i  170 (194)
                         +|++|+|.+|              ||+||||+|||+ + +++||||+||++|+.|++| +||++|+++++|++|+|+
T Consensus       255 ---~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~  331 (349)
T d1gp6a_         255 ---KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPR  331 (349)
T ss_dssp             ---EEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCE
T ss_pred             ---ceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCc
Confidence               7999999999              999999999999 4 7899999999999999865 899999999999999999


Q ss_pred             CHHHHHHHHH
Q 029344          171 KTGDYILSRF  180 (194)
Q Consensus       171 t~~eyl~~r~  180 (194)
                      |++||++.|+
T Consensus       332 t~~e~~~~rl  341 (349)
T d1gp6a_         332 TFAQHIEHKL  341 (349)
T ss_dssp             EHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999999988
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure