Citrus Sinensis ID: 029398

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MFQVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATTAHDHQSAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDHEQNVDSFESFPVIDESFWTDTSLSENSSNLTSDFGGGLNEFAIGHHDYGGGMDFWYNILVTSGADSLTLPF
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MFQVLYLInfapfsrwsaiagrlpgrtdneiKNVWHTHLKKKAAAVLKQNQKantntnnnnnsddhkqnskattahdhqsaesamspqassssdelssvttgetnnnnnsdrycmdkyvkgdheqnvdsfesfpvidesfwtdtslsenssnltsdfggglnefaighhdygggmDFWYNILVTsgadsltlpf
Flexible Loop (DISEMBL)
MFQVLYLInfapfsrwSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKantntnnnnnsddhKQNSKATTAHDHQSAESAMSPQASSSSDELSsvttgetnnnnnsdrYCMDKYVKGDHEQNVDSFESFPVIDESFWTDTSLSENSSNLTSDFGGGLNEFAIGHHDYGGGMDFWYNILVTSGADSLTLPF
Low Complexity Region (SEG)
MFQVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKAntntnnnnnSDDHKQNSKATTAHDHQsaesamspqassssdelssVTTGETNNNNNSDRYCMDKYVKGDHEQNVDSFESFPVIDESFWTdtslsenssnltsdFGGGLNEFAIGHHDYGGGMDFWYNILVTSGADSLTLPF
Disordered region (IsUnstruct)
*********************************************************************************************************************YV********DSFESFPVIDESFWTDT*********TSDFGGGLNEFAIGHHDYGGGMDFWYNILVTSG********
Disordered Region (DISOPRED)
MFQVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHL*********************************************************************************************FPVIDESFWTDTSLSENSSN****************HDYGGGMDFWYNILVTSGADSLTLPF
Disordered Region (DISEMBL)
MFQVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNN*****************************************TNNNNNSDRYCMDKYVKGDHEQNVDSFESFPVIDESFWTDTSLSENSSNLTSDFGGGLNEFAIGHHDYGGGMDFWYNILVTSGADSLTLPF
Disordered Region (DISPRO)
MFQVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAV*****************************************************************************************I**SF********************************GGMDFWYNILVTSGADSLTLPF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATTAHDHQSAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDHEQNVDSFESFPVIDESFWTDTSLSENSSNLTSDFGGGLNEFAIGHHDYGGGMDFWYNILVTSGADSLTLPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q7XBH4	257	Myb-related protein Myb4	no	no	0.144	0.108	0.928	1e-09
Q38850	249	Transcription repressor M	no	no	0.438	0.341	0.378	8e-09
Q9FJA2	258	Transcription factor TT2	no	no	0.247	0.186	0.571	4e-08
P20024	340	Myb-related protein Zm1 O	N/A	no	0.221	0.126	0.577	7e-08
Q38851	236	Transcription repressor M	no	no	0.206	0.169	0.575	2e-07
Q53NK6	237	Myb-related protein MYBAS	no	no	0.149	0.122	0.793	2e-07
Q4JL76	242	Myb-related protein MYBAS	no	no	0.149	0.119	0.793	3e-07
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.273	0.180	0.484	3e-07
Q9S9K9	257	Transcription factor MYB3	no	no	0.144	0.108	0.785	3e-07
Q9LTF7	201	Transcription factor MYB8	no	no	0.149	0.144	0.793	3e-07

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
           RWSAIA RLPGRTDNEIKNVWHTHLKK+
Sbjct: 88  RWSAIAARLPGRTDNEIKNVWHTHLKKR 115

Putative transcription factor which is may be involved in cold stress response.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 10/95 (10%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATT 74
           RWS IAGR+PGRTDNEIKN W+THL+KK   +L+Q     T+   + N + HK   + + 
Sbjct: 99  RWSLIAGRIPGRTDNEIKNYWNTHLRKK---LLRQGIDPQTHKPLDAN-NIHKPEEEVSG 154

Query: 75  AHDHQSAESAMSPQASSSSDELSSVTTGETNNNNN 109
              +      + P +SS +D+ ++V  G+ ++ N+
Sbjct: 155 GQKY-----PLEPISSSHTDD-TTVNGGDGDSKNS 183

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJA2|TT2_ARATH Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAV-LKQNQKANTNTNNNNN 62
           RWS IAGRLPGRTDNEIKN W+++L+K+      KQ ++   +TNN NN
Sbjct: 90  RWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQPKRIKHSTNNENN 138

Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS).

Arabidopsis thaliana (taxid: 3702)

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNN 59
           +WS IA  LPGRTDNEIKNVW+THLKKK A   ++ +KA   + +
Sbjct: 90  KWSKIAACLPGRTDNEIKNVWNTHLKKKVAQ--REKKKAGAGSGD 132

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.

Zea mays (taxid: 4577)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 32/40 (80%)

Query: 3   QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
           Q++  ++    ++WS IAGRLPGRTDNEIKN W+TH+K+K
Sbjct: 76  QIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q53NK6|MYBA1_ORYSJ Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 25/29 (86%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKA 43
           RWS IA RLPGRTDNEIKN W TH++KKA
Sbjct: 84  RWSRIARRLPGRTDNEIKNYWRTHMRKKA 112

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4JL76|MYBA2_ORYSJ Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 25/29 (86%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKA 43
           RWS IA RLPGRTDNEIKN W TH++KKA
Sbjct: 84  RWSRIARRLPGRTDNEIKNYWRTHMRKKA 112

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 11/64 (17%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAV---------LKQNQKANTNTNNNNNSDD 65
           RWS IA RLPGRTDNEIKN W+TH+KKK   +         LK  ++AN +      SD 
Sbjct: 88  RWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLK--KEANLSDQPTTESDQ 145

Query: 66  HKQN 69
           +K+N
Sbjct: 146 NKEN 149

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/28 (78%), Positives = 26/28 (92%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
           +WS IAGRLPGRTDNEIKN W+TH+K+K
Sbjct: 88  KWSLIAGRLPGRTDNEIKNYWNTHIKRK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTF7|MYB82_ARATH Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 25/29 (86%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKA 43
           RWS IAGRLPGRTDNE+KN W+THL KK 
Sbjct: 88  RWSLIAGRLPGRTDNEVKNYWNTHLNKKP 116

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224099907	287	predicted protein [Populus trichocarpa]	0.804	0.543	0.406	1e-21
22266675	253	myb-related transcription factor VlMYBB1	0.778	0.596	0.375	1e-19
327412635	272	putative MYB transcription factor [Rosa	0.845	0.602	0.370	1e-18
356498363	264	PREDICTED: myb-related protein Myb4-like	0.788	0.579	0.348	2e-18
5139806	264	GmMYB29A2 [Glycine max]	0.788	0.579	0.348	2e-18
217337738	238	myb-related transcription factor [Panax	0.706	0.575	0.398	2e-18
156147383	278	myb-related transcription factor [Datura	0.829	0.579	0.396	2e-18
6552359	281	myb-related transcription factor LBM1 [N	0.865	0.597	0.399	2e-17
359806618	272	uncharacterized protein LOC100807569 [Gl	0.824	0.588	0.33	2e-17
297831064	285	AtMYB15/AtY19/MYB15 [Arabidopsis lyrata	0.871	0.592	0.382	3e-17

>gi|224099907|ref|XP_002311670.1| predicted protein [Populus trichocarpa] gi|222851490|gb|EEE89037.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 104/197 (52%), Gaps = 41/197 (20%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANT-------NTNNNNNSDDHK 67
           RWSAIA RLPGRTDNEIKNVWHTHL K+    LKQN +  +       + + N+N     
Sbjct: 88  RWSAIASRLPGRTDNEIKNVWHTHLLKR----LKQNGEPKSQQHIRIPDCHLNDNKLSQS 143

Query: 68  QNSKATTAHDHQSAESA-MSPQASS---SSDELSSVTTGETNNNNNSDRYCMDKYVKGDH 123
            NS   +    +S E A +SPQ SS   SS   +SVTT ETNN            +K   
Sbjct: 144 ANSTIPSLSGCKSIEYAQISPQPSSSDHSSVTDTSVTTSETNNTG---------LIKV-- 192

Query: 124 EQNVDSFESFPVIDESFWTDTSLSENSSNLTSDFGGGLNEFAIGHHD-------YGGG-- 174
            +N+DS E +PVIDE FW++  + ENS   +S+F    ++F     D       YG G  
Sbjct: 193 -ENIDSSEIYPVIDEDFWSEPEMVENSGMPSSNFLDD-SQFPFPSPDTMERAGCYGYGPK 250

Query: 175 ----MDFWYNILVTSGA 187
               M+FWYN+ + SG 
Sbjct: 251 VDDNMEFWYNLFIKSGG 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22266675|dbj|BAC07544.1| myb-related transcription factor VlMYBB1-2 [Vitis labrusca x Vitis vinifera]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 96/184 (52%), Gaps = 33/184 (17%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATT 74
           +WSAIA  LPGRTDNEIKNVWHTHLKK+    L              +S  H   + +T 
Sbjct: 88  KWSAIAASLPGRTDNEIKNVWHTHLKKRLTKKLA-----------TPDSKGHFTAAASTC 136

Query: 75  AHDHQSAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDHEQNVDSF--ES 132
             D  ++   MSPQ SSS  E SS T   T          M+ +  G   + ++ +  ES
Sbjct: 137 DSDSFNSSGKMSPQPSSS--EFSSFTDSSTRT--------METHSTGVKNEQMEEYSPES 186

Query: 133 FPVIDESFWTDTSLSENSSNLTSDFGGGLNEFAIGHHD--YGG-------GMDFWYNILV 183
           FP IDESFW+D +LS ++S++ SDF    +E  +   +  YG        GM+FWY++ +
Sbjct: 187 FPEIDESFWSD-ALSSDNSSMASDFPAVADELQLQTPELAYGQISNMMDDGMEFWYDVFI 245

Query: 184 TSGA 187
            +G 
Sbjct: 246 RAGG 249

Source: Vitis labrusca x Vitis vinifera

Species: Vitis labrusca x Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412635|emb|CCA29106.1| putative MYB transcription factor [Rosa rugosa]

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 95/197 (48%), Gaps = 33/197 (16%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATT 74
           RWSAIA RLPGRTDNEIKNVWHTHLKKK +  +KQN          +  +   +N+    
Sbjct: 88  RWSAIAARLPGRTDNEIKNVWHTHLKKKLS--IKQNSTTPEAQGQESEPEPEPENTSCFA 145

Query: 75  AHDHQSAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDHEQNVDSFESFP 134
             +         PQ ++S+D+ SS TT E  NN  S    M    K D+E N+      P
Sbjct: 146 KSESFEYGPVSPPQCTTSADDTSSFTTSE--NNTCSANMGM----KVDYEMNL------P 193

Query: 135 VIDESFWTDT-SLSENSSN--LTSDFGGGLNEFA----------------IGHHDYGGGM 175
             DESFW++  S  +N SN  ++ DF   +   A                 G + Y   M
Sbjct: 194 QADESFWSEVLSADQNCSNETVSCDFDQAIGAAADPQVNATVEVPVDFGFSGSNMYDNCM 253

Query: 176 DFWYNILVTSGADSLTL 192
           DFWYN+  T+G  S  L
Sbjct: 254 DFWYNVFTTAGEISELL 270

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498363|ref|XP_003518022.1| PREDICTED: myb-related protein Myb4-like [Glycine max]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 100/201 (49%), Gaps = 48/201 (23%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATT 74
           RWSAIA +LPGRTDNEIKNVWHTHLKK+                   NSD  K+ SK   
Sbjct: 88  RWSAIAAKLPGRTDNEIKNVWHTHLKKRLL-----------------NSDIQKRVSKPRI 130

Query: 75  AH--DHQSAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDHEQNVDSFES 132
                + S  + + P +S+ +  LS  ++      N      MD  +K +  ++V++   
Sbjct: 131 KRSDSNSSTLTQLEPTSSACTTSLSDFSSFSEGTKN------MDNMIKSEDIESVETI-- 182

Query: 133 FPVIDESFWTDTSLS-ENSSNLTSDFGGGLNEFAIGHH-------------DYGG----- 173
            P IDESFW++ ++  E+S+ +TS+     NE A   +             DY G     
Sbjct: 183 MPPIDESFWSEATVDYESSTMMTSNSWTISNELAPPQYQFNSVESFQQQSVDYNGSNDDH 242

Query: 174 -GMDFWYNILVTSGADSLTLP 193
            GMDFWY+I + SG +S+ LP
Sbjct: 243 DGMDFWYDIFIKSG-ESIELP 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5139806|dbj|BAA81732.1| GmMYB29A2 [Glycine max]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 100/201 (49%), Gaps = 48/201 (23%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATT 74
           RWSAIA +LPGRTDNEIKNVWHTHLKK+                   NSD  K+ SK   
Sbjct: 88  RWSAIAAKLPGRTDNEIKNVWHTHLKKRLL-----------------NSDIQKRVSKPRI 130

Query: 75  AH--DHQSAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDHEQNVDSFES 132
                + S  + + P +S+ +  LS  ++      N      MD  +K +  ++V++   
Sbjct: 131 KRSDSNSSTLTQLEPTSSACTTSLSDFSSFSEGTKN------MDNMIKSEDIESVETI-- 182

Query: 133 FPVIDESFWTDTSLS-ENSSNLTSDFGGGLNEFAIGHH-------------DYGG----- 173
            P IDESFW++ ++  E+S+ +TS+     NE A   +             DY G     
Sbjct: 183 MPPIDESFWSEATVDYESSTMMTSNSWTISNELAPPQYQFNSVESFQQQSVDYNGSNDDH 242

Query: 174 -GMDFWYNILVTSGADSLTLP 193
            GMDFWY+I + SG +S+ LP
Sbjct: 243 DGMDFWYDIFIKSG-ESIELP 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217337738|gb|ACK43221.1| myb-related transcription factor [Panax ginseng]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 93/178 (52%), Gaps = 41/178 (23%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKK-----AAAVLKQNQKANTNTNNNNNSDDHKQN 69
           RWSA+A +LPGRTDNEIKNVWHTHLKKK      ++ +   Q++   +N + N D   + 
Sbjct: 88  RWSAMAAKLPGRTDNEIKNVWHTHLKKKLKNYQPSSQVVTKQQSMIKSNGHKNPDFSAR- 146

Query: 70  SKATTAHDHQSAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDHEQNVDS 129
                       E    PQ SSS  ELSSVT              M   VK   ++ +DS
Sbjct: 147 -----------PEVCGPPQGSSS--ELSSVTV-------------MTTAVK---QEQMDS 177

Query: 130 FES-FPVIDESFWTDTSLSENSSNLTSDFGGGLNEFAIGHHDYGGGMDFWYNILVTSG 186
            ES FP IDESFWT    +E+S    S+F G  ++  +G      GMDFWYN+ + +G
Sbjct: 178 SESTFPEIDESFWTQ---AEDSKMEFSEFRGPNDK--LGCQMIEDGMDFWYNLFIRAG 230

Source: Panax ginseng

Species: Panax ginseng

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156147383|gb|ABU53925.1| myb-related transcription factor [Datura metel]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 103/207 (49%), Gaps = 46/207 (22%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATT 74
           RWSAIA RLPGRTDNEIKNVWHTHLKK+    LK  Q   T+  +  N++D K  S +  
Sbjct: 88  RWSAIAARLPGRTDNEIKNVWHTHLKKR----LKNYQPPQTSKRHCKNNNDSKAPSTSQI 143

Query: 75  A----HDHQSAESAM--------SPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGD 122
           A    H+  + +  +        SPQ SSS  E+S+VT        +S    M     G 
Sbjct: 144 ALKSSHNFSNIQEDINGPGPGPNSPQRSSS--EMSTVTA-------DSLAVTMGITNGGG 194

Query: 123 HEQNVDSFESF-PVIDESFWTDTSLSENSSNLTSDFGGGLNEFAIG-----------HHD 170
           H   +DS E+F P IDESFWTD   + ++SN     G G  E  +              D
Sbjct: 195 H---MDSSENFIPEIDESFWTDDLSTADNSNFNM-VGSGGEELQVQFPFHAMKQESVEMD 250

Query: 171 YGGG----MDFWYNILVTSGADSLTLP 193
            G      MDFWYN+ + SG D L LP
Sbjct: 251 VGAKLEDDMDFWYNVFIKSG-DLLELP 276

Source: Datura metel

Species: Datura metel

Genus: Datura

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6552359|dbj|BAA88221.1| myb-related transcription factor LBM1 [Nicotiana tabacum]

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 99/203 (48%), Gaps = 35/203 (17%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATT 74
           RWSAIA RLPGRTDNEIKNVWHTHLKK+    LK  Q    +  ++ N+ D K  S + T
Sbjct: 88  RWSAIAARLPGRTDNEIKNVWHTHLKKR----LKNYQPPQNSKRHSKNNLDSKAPSTSQT 143

Query: 75  AHDHQ-----------SAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDH 123
            ++                   SPQ SSS  E+S+VT   T          +D       
Sbjct: 144 FNNSDNFSNIQEDINGPVTGPNSPQRSSS--EMSTVTVDSTAMTT----ITIDDQNMFKQ 197

Query: 124 EQNVDSFESF-PVIDESFWT-DTSLSENSSNLTSDFGGGLN-EFAIG-----HHDYGGG- 174
              +DS E+F P IDESFWT D S S+NS+      GG L  +F          D  G  
Sbjct: 198 LDEMDSSENFIPEIDESFWTDDLSTSDNSTFGMEGTGGELQVQFPFSSVKQESMDMVGAK 257

Query: 175 ----MDFWYNILVTSGADSLTLP 193
               MDFWYN+ + SG D L LP
Sbjct: 258 LEDDMDFWYNVFIKSG-DLLDLP 279

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806618|ref|NP_001241018.1| uncharacterized protein LOC100807569 [Glycine max] gi|5139814|dbj|BAA81736.1| GmMYB29B2 [Glycine max] gi|255642060|gb|ACU21296.1| unknown [Glycine max]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 98/200 (49%), Gaps = 40/200 (20%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQ-----KANTNTNNNNNSDDHKQN 69
           RWSAIA +LPGRTDNEIKNVWHT+LKK+   +LK +Q     K  T      +  +    
Sbjct: 88  RWSAIAAKLPGRTDNEIKNVWHTNLKKR---LLKSDQSKPSSKRATKPKIKRSDSNSSII 144

Query: 70  SKATTAHDHQSAESAMSPQASSSSDELSSVTTGETNNNNNSDRYCMDKYVKGDHEQNVDS 129
           +++  AH         S   ++SS + SSVT G++ N   S              ++++S
Sbjct: 145 TQSEPAHLRFREMDTTSTACNTSSSDFSSVTVGDSKNIIKS--------------EDIES 190

Query: 130 FESFPVIDESFWTDTSLSENSSNLTSD--------------FGGGLNEFAIGH---HDYG 172
            E+ PVIDESFW++ ++ + +  ++S               F      F   H    ++ 
Sbjct: 191 METMPVIDESFWSEAAIDDETPTMSSQSLITISNDMPLQYPFANYEETFQQSHAYDSNFD 250

Query: 173 GGMDFWYNILVTSGADSLTL 192
            GMDFWY+I  T   DS+ L
Sbjct: 251 DGMDFWYDIF-TRTNDSIEL 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831064|ref|XP_002883414.1| AtMYB15/AtY19/MYB15 [Arabidopsis lyrata subsp. lyrata] gi|297329254|gb|EFH59673.1| AtMYB15/AtY19/MYB15 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 27/196 (13%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKATT 74
           RWSAIA +LPGRTDNEIKNVWHTHLKK+    LK  Q A   T+N       K  S  T+
Sbjct: 88  RWSAIAAKLPGRTDNEIKNVWHTHLKKR----LKDYQPAKPKTSNKKKGTKPKSESVITS 143

Query: 75  AHDHQS-AESAMSPQASSSSDELSSVTTGETNN------NNNSDRYCMDKYVKGD---HE 124
           ++  +S +E A S   S  S  L+S +T E ++        +S+   MD Y  GD    +
Sbjct: 144 SNSTRSESELANSSNPSGESLFLASPSTSEVSSMTLISHEGHSNEINMD-YKPGDIGTID 202

Query: 125 QNVDSFESFPV-IDESFWTDTSLSENSSNLTSD--FGGGLNEFA-----IGHHDY----G 172
           Q+  S E+F   IDESFW +T  S++  N  S+     GL+E       +G  +Y     
Sbjct: 203 QDCVSLETFGADIDESFWNETLYSQSEHNYASNDLEVAGLDEIQQEFQHLGSVNYEMIFD 262

Query: 173 GGMDFWYNILVTSGAD 188
             MDFW+++L  +G +
Sbjct: 263 SEMDFWFDVLARTGGE 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2042526	249	MYB14 "myb domain protein 14"	0.149	0.116	0.862	9.8e-17
TAIR|locus:2038520	246	MYB13 "myb domain protein 13"	0.319	0.252	0.483	8.9e-15
TAIR|locus:2086233	285	MYB15 "myb domain protein 15"	0.634	0.431	0.359	7.6e-12
TAIR|locus:2098906	299	MYB17 "myb domain protein 17"	0.149	0.096	0.758	2.9e-10
TAIR|locus:2205283	282	MYB20 "myb domain protein 20"	0.149	0.102	0.758	1.7e-09
TAIR|locus:2032860	274	MYB58 "myb domain protein 58"	0.293	0.208	0.438	2.1e-09
TAIR|locus:2207330	294	MYB63 "myb domain protein 63"	0.159	0.105	0.774	3.4e-09
TAIR|locus:504955052	201	MYB82 "myb domain protein 82"	0.149	0.144	0.793	3.6e-09
TAIR|locus:2092820	249	MYB5 "myb domain protein 5" [A	0.149	0.116	0.793	5.5e-09
TAIR|locus:2019185	330	MYB31 "myb domain protein 31"	0.190	0.112	0.621	5.6e-09

TAIR|locus:2042526 MYB14 "myb domain protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.8e-17, Sum P(3) = 9.8e-17
 Identities = 25/29 (86%), Positives = 28/29 (96%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
             +RWSAIA +LPGRTDNEIKNVWHTHLKK+
Sbjct:    87 NRWSAIAAKLPGRTDNEIKNVWHTHLKKR 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2038520 MYB13 "myb domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
 Identities = 30/62 (48%), Positives = 36/62 (58%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKAXXXXXXXXXSDDHKQNSKAT 73
             +RWSAIA +LPGRTDNEIKNVWHTHLKK+      QN K               Q   ++
Sbjct:    87 NRWSAIAAKLPGRTDNEIKNVWHTHLKKRLHHSQDQNNKEDFVSTTAAEMPTSPQQQSSS 146

Query:    74 TA 75
             +A
Sbjct:   147 SA 148

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2086233 MYB15 "myb domain protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 50/139 (35%), Positives = 64/139 (46%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKAXXXXXXXXXSDDHKQNSKAT 73
             +RWSAIA +LPGRTDNEIKNVWHTHLKK+    L+  Q A             K  S  T
Sbjct:    87 NRWSAIAAKLPGRTDNEIKNVWHTHLKKR----LEDYQPAKPKTSNKKKGTKPKSESVIT 142

Query:    74 TAHDHQXXXXXXXXXX-XXXXXXXXXVTTGETNNNN--NSDRYC----MDKYVKGDH--- 123
             +++  +                     +T E ++    + D Y     MD    GD    
Sbjct:   143 SSNSTRSESELADSSNPSGESLFSTSPSTSEVSSMTLISHDGYSNEINMDNK-PGDISTI 201

Query:   124 EQNVDSFESFPV-IDESFW 141
             +Q   SFE+F   IDESFW
Sbjct:   202 DQECVSFETFGADIDESFW 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
 Identities = 22/29 (75%), Positives = 28/29 (96%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
             +RW+AIA +LPGRTDNEIKN+W+THLKK+
Sbjct:    87 NRWAAIAAQLPGRTDNEIKNLWNTHLKKR 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048443 "stamen development" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2205283 MYB20 "myb domain protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 22/29 (75%), Positives = 25/29 (86%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
             +RWS IA  LPGRTDNEIKN W+TH+KKK
Sbjct:    87 NRWSKIASHLPGRTDNEIKNHWNTHIKKK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2032860 MYB58 "myb domain protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKAXXXXXXXXXSDDHKQNS 70
             ++WS IA +LPGRTDNEIKNVWHTHLKK+ ++    N             ++ +++S
Sbjct:    89 NKWSKIASKLPGRTDNEIKNVWHTHLKKRLSSETNLNADEAGSKGSLNEEENSQESS 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2207330 MYB63 "myb domain protein 63" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 24/31 (77%), Positives = 28/31 (90%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAA 44
             ++WS IA +LPGRTDNEIKNVWHTHLKK+ A
Sbjct:    89 NKWSKIASQLPGRTDNEIKNVWHTHLKKRLA 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:504955052 MYB82 "myb domain protein 82" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
             +RWS IAGRLPGRTDNE+KN W+THL KK
Sbjct:    87 NRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2092820 MYB5 "myb domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 23/29 (79%), Positives = 27/29 (93%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
             +RWS IAGR+PGRTDNEIKN W+THL+KK
Sbjct:    98 NRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0009845 "seed germination" evidence=NAS

GO:0010026 "trichome differentiation" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0048354 "mucilage biosynthetic process involved in seed coat development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2019185 MYB31 "myb domain protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query:    14 SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQN 50
             +RW+AIA  LP RTDN+IKN W+THLKKK   +  QN
Sbjct:    87 NRWAAIASYLPQRTDNDIKNYWNTHLKKKLVMMKFQN 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-11
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	6e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-06
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-04
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-04

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 60.1 bits (145), Expect = 3e-11
 Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 10/96 (10%)

Query: 14  SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKAT 73
           +RWS IAGR+PGRTDNEIKN W+THL+KK   +L+Q     T+   + N + HK   + +
Sbjct: 98  NRWSLIAGRIPGRTDNEIKNYWNTHLRKK---LLRQGIDPQTHKPLDAN-NIHKPEEEVS 153

Query: 74  TAHDHQSAESAMSPQASSSSDELSSVTTGETNNNNN 109
               +      + P +SS +D+ ++V  G+ ++ N+
Sbjct: 154 GGQKY-----PIEPISSSHTDD-TTVNGGDGDSKNS 183

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 54.2 bits (130), Expect = 6e-09
 Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 20/92 (21%)

Query: 14  SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSKAT 73
           +RWS IA +LPGRTDNEIKN+W++ LKKK    L+Q +  + NT        HK  S+  
Sbjct: 87  NRWSQIAAQLPGRTDNEIKNLWNSCLKKK----LRQ-RGIDPNT--------HKPLSEVE 133

Query: 74  TAHDHQSAESAMSPQASSSSDELSSVTTGETN 105
              D         P     SD+ SSV + E N
Sbjct: 134 NGEDKN-------PPTDDKSDKASSVVSNELN 158

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 15 RWSAIAGRLPGRTDNEIKNVWHTHL 39
           WS IA  LPGRTDN+ KN W+ +L
Sbjct: 23 NWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 12 PFSRWSAIAGRLPGRTDNEIKNVWHTHLKK 41
            + W  IA  LPGRT  + +  W   LK 
Sbjct: 20 GKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 12 PFSRWSAIAGRLPGRTDNEIKNVWHTHL 39
            + W  IA  LPGRT  + +  W   L
Sbjct: 18 GKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.43
PLN03212	249	Transcription repressor MYB5; Provisional	99.16
PLN03091	459	hypothetical protein; Provisional	99.05
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.63
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.56
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.51
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.39
PLN03212	249	Transcription repressor MYB5; Provisional	97.92
KOG0048	238	consensus Transcription factor, Myb superfamily [T	97.73
PLN03091	459	hypothetical protein; Provisional	97.55
KOG0049	939	consensus Transcription factor, Myb superfamily [T	95.15
COG5147	512	REB1 Myb superfamily proteins, including transcrip	94.93
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	94.76
COG5147	512	REB1 Myb superfamily proteins, including transcrip	93.97
KOG0051	607	consensus RNA polymerase I termination factor, Myb	91.34
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	89.09
KOG0049	939	consensus Transcription factor, Myb superfamily [T	87.66
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	80.57

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.43  E-value=1.1e-13  Score=118.92  Aligned_cols=45  Identities=56%  Similarity=0.870  Sum_probs=41.7

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhhHHHHHHhcC
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQ   51 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr~~~~lk~~~   51 (194)
                      ++|+++|+.+||||+.||++|||||||+|||+|+++|+||    +....
T Consensus        71 ~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkk----l~~~~  115 (238)
T KOG0048|consen   71 DLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKK----LLKMG  115 (238)
T ss_pred             HHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHH----HHHcC
Confidence            6899999999999999999999999999999999999999    65544

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.16  E-value=5.1e-11  Score=104.26  Aligned_cols=46  Identities=52%  Similarity=0.855  Sum_probs=41.6

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhhHHHHHHhcCc
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQK   52 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr~~~~lk~~~~   52 (194)
                      ++|+++|.+||++|+.||++|||||+++|||||+.+++++    ++....
T Consensus        87 ~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~----l~r~~i  132 (249)
T PLN03212         87 DLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK----LLRQGI  132 (249)
T ss_pred             HHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHH----HHhcCC
Confidence            5899999999999999999999999999999999999998    554443

>PLN03091 hypothetical protein; Provisional

Probab=99.05  E-value=3e-10  Score=106.19  Aligned_cols=45  Identities=51%  Similarity=0.848  Sum_probs=41.4

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhhHHHHHHhcC
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQ   51 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr~~~~lk~~~   51 (194)
                      ++|+++|++||+||+.||++|||||+++|||||+.+|||+    +++.+
T Consensus        76 ~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk----lr~~~  120 (459)
T PLN03091         76 NLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK----LRQRG  120 (459)
T ss_pred             HHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH----HHHcC
Confidence            5899999999999999999999999999999999999999    55544

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.63  E-value=3.2e-08  Score=65.34  Aligned_cols=37  Identities=27%  Similarity=0.404  Sum_probs=34.6

Q ss_pred             HHHHHHHHccCCC-HHHHhccCC-CCChHHHHHHHHHhh
Q 029398            3 QVLYLINFAPFSR-WSAIAGRLP-GRTDNEIKNVWHTHL   39 (194)
Q Consensus         3 ~lLi~l~~e~Gnk-Ws~IA~~Lp-GRTdn~IKNrW~~~L   39 (194)
                      ++|++++.+||.. |..||..+| |||..+|++||+.++
T Consensus        10 ~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen   10 EKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             HHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5899999999988 999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.56  E-value=4.1e-08  Score=66.93  Aligned_cols=40  Identities=30%  Similarity=0.499  Sum_probs=34.2

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.++|+.|..||+.|+.||..+|++||+..|+..
T Consensus         7 ~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~   46 (60)
T PF13921_consen    7 ELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPK   46 (60)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCccc
Confidence            6899999999999999999995599999999999976544

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.51  E-value=1.2e-07  Score=59.84  Aligned_cols=38  Identities=32%  Similarity=0.552  Sum_probs=35.4

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lr   40 (194)
                      ++|+.++.++| ..|..||..|++||..+|++||+..++
T Consensus        10 ~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717       10 ELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             HHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            58999999999 999999999999999999999998654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.39  E-value=4.4e-07  Score=56.54  Aligned_cols=36  Identities=28%  Similarity=0.480  Sum_probs=33.8

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~   38 (194)
                      ++|++++.++| .+|..||+.+++|+..+|+++|...
T Consensus         8 ~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           8 ELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             HHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            57999999999 9999999999999999999999874

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.92  E-value=7.2e-06  Score=72.16  Aligned_cols=42  Identities=17%  Similarity=0.259  Sum_probs=37.7

Q ss_pred             HHHHHHHHccC-CCHHHHhccC-CCCChHHHHHHHHHhhHhhHH
Q 029398            3 QVLYLINFAPF-SRWSAIAGRL-PGRTDNEIKNVWHTHLKKKAA   44 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~L-pGRTdn~IKNrW~~~Lrkr~~   44 (194)
                      ++|++++++|| ++|..||+++ +|||+++|+.||..+|+..+.
T Consensus        34 e~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~   77 (249)
T PLN03212         34 EILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVK   77 (249)
T ss_pred             HHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcc
Confidence            58999999999 6899999998 699999999999999876644

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=97.73  E-value=1.3e-05  Score=69.08  Aligned_cols=42  Identities=10%  Similarity=-0.047  Sum_probs=38.6

Q ss_pred             HHHHHHHHccCCC-HHHHhccCC-CCChHHHHHHHHHhhHhhHH
Q 029398            3 QVLYLINFAPFSR-WSAIAGRLP-GRTDNEIKNVWHTHLKKKAA   44 (194)
Q Consensus         3 ~lLi~l~~e~Gnk-Ws~IA~~Lp-GRTdn~IKNrW~~~Lrkr~~   44 (194)
                      ++|++++++||.+ |..||+.++ ||++++|+-||..+|+..++
T Consensus        18 ~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ik   61 (238)
T KOG0048|consen   18 LTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLK   61 (238)
T ss_pred             HHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCcc
Confidence            5899999999955 999999999 99999999999999998844

>PLN03091 hypothetical protein; Provisional

Probab=97.55  E-value=4.3e-05  Score=72.10  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=37.0

Q ss_pred             HHHHHHHHccC-CCHHHHhccC-CCCChHHHHHHHHHhhHhhHH
Q 029398            3 QVLYLINFAPF-SRWSAIAGRL-PGRTDNEIKNVWHTHLKKKAA   44 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~L-pGRTdn~IKNrW~~~Lrkr~~   44 (194)
                      ++|++++.+|| .+|..||+.+ +||++++||.||+.+|+..++
T Consensus        23 e~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~Ik   66 (459)
T PLN03091         23 EKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK   66 (459)
T ss_pred             HHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCccc
Confidence            58999999999 5799999988 599999999999988876643

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=95.15  E-value=0.021  Score=56.84  Aligned_cols=42  Identities=17%  Similarity=0.337  Sum_probs=37.7

Q ss_pred             HHHHHHHHccCCC-HHHHhccCCCCChHHHHHHHHHhhHhhHH
Q 029398            3 QVLYLINFAPFSR-WSAIAGRLPGRTDNEIKNVWHTHLKKKAA   44 (194)
Q Consensus         3 ~lLi~l~~e~Gnk-Ws~IA~~LpGRTdn~IKNrW~~~Lrkr~~   44 (194)
                      .+|+.++.+||.| |++|...+|||++.+|+.||+..|.++++
T Consensus       369 ~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  369 VLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             HHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhc
Confidence            3789999999955 99999999999999999999998887754

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=94.93  E-value=0.023  Score=54.80  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=37.4

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      +.|++++.++|++|+.||..+|||++.+|.++|...+...
T Consensus        81 ~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~~~~  120 (512)
T COG5147          81 EQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDL  120 (512)
T ss_pred             HHHHHHHHhcCchhhhhccccCccchHHHHHHHHHHhhhh
Confidence            5789999999999999999999999999999999877766

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=94.76  E-value=0.025  Score=54.84  Aligned_cols=42  Identities=26%  Similarity=0.345  Sum_probs=37.9

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhhHH
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAA   44 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr~~   44 (194)
                      ++|--.+..|| +.|+.|++.|+..+..+|++||..++...++
T Consensus        16 eilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~   58 (617)
T KOG0050|consen   16 EVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIK   58 (617)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHh
Confidence            56777899999 8899999999999999999999998888754

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=93.97  E-value=0.028  Score=54.28  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=35.3

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      +.|..++++|| +.|++||..|.-|++++|++||+.++...
T Consensus        29 e~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~   69 (512)
T COG5147          29 EDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQ   69 (512)
T ss_pred             hHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchh
Confidence            35677889999 77999999998899999999998877666

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=91.34  E-value=0.18  Score=49.70  Aligned_cols=39  Identities=21%  Similarity=0.358  Sum_probs=35.1

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      +.|..+|.++|+.|..|++.| ||....|+-||..+.+..
T Consensus       393 eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  393 EELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             HHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            578999999999999999999 999999999999766544

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=89.09  E-value=0.31  Score=34.79  Aligned_cols=27  Identities=44%  Similarity=0.757  Sum_probs=19.8

Q ss_pred             CHHHHhccC----CCCChHHHHHHHHHhhHhh
Q 029398           15 RWSAIAGRL----PGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus        15 kWs~IA~~L----pGRTdn~IKNrW~~~Lrkr   42 (194)
                      .|..||..|    ..||..+|+++|+. |+++
T Consensus        36 ~w~~Ia~~l~~~G~~rt~~qc~~Kw~~-L~~~   66 (90)
T PF13837_consen   36 VWKEIAEELAEHGYNRTPEQCRNKWKN-LKKK   66 (90)
T ss_dssp             HHHHHHHHHHHHC----HHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHH
Confidence            499999988    47999999999999 4555

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=87.66  E-value=1.1  Score=45.24  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      +.|+.++.+|| ..|..||..||.||+.+...|-...++.+
T Consensus       421 eqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k  461 (939)
T KOG0049|consen  421 EQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAK  461 (939)
T ss_pred             HHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHH
Confidence            57899999999 88999999999999976555444334333

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=80.57  E-value=1.8  Score=41.31  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.8

Q ss_pred             HHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHh
Q 029398            4 VLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         4 lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~   38 (194)
                      +|++....|| ..|..||.++..|+..+||.+|..+
T Consensus        82 lLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~  117 (438)
T KOG0457|consen   82 LLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKH  117 (438)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHH
Confidence            6889999999 8999999999889999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		7e-04

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 3  QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
          ++LY  +    +RW+ IA  LPGRTDN IKN W++ +++K
Sbjct: 14 RILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-17
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	9e-16
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-15
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	4e-13
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-12
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	9e-12

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 73.5 bits (181), Expect = 2e-17
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDD 65
           +WS IA  +PGRTDN IKN W++ + K+ +      +    + +    + D
Sbjct: 75  KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKKRKAAD 125

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score = 68.7 bits (169), Expect = 9e-16
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
           RW+ IA  LPGRTDN IKN W++ +++K
Sbjct: 77  RWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 68.3 bits (168), Expect = 2e-15
 Identities = 15/28 (53%), Positives = 22/28 (78%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
           RW+ IA  LPGRTDN +KN W++ +++K
Sbjct: 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 62.3 bits (152), Expect = 4e-13
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 14  SRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNN 61
            +W+ IA   PGRTD  IKN W T   K       Q Q+   + ++++
Sbjct: 82  RQWAIIAKFFPGRTDIHIKNRWVTISNKLGI---PQTQQMLEHHHHHH 126

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 15  RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42
           RW+ IA  LPGRTDN IKN W++ +++K
Sbjct: 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 58.3 bits (142), Expect = 9e-12
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 14  SRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 43
            +W+ I+  L  R+DN I+N W    + +A
Sbjct: 73  PKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.26
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.1
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.09
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.08
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.05
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.05
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.03
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.02
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.59
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.02
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.01
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.95
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.95
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.94
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.93
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.86
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.84
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.79
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	98.78
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.74
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.73
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.61
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.58
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.51
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.48
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.42
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.42
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.42
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	98.39
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.38
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.29
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.29
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.16
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.13
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.82
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.76
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	97.74
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.7
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	96.73
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.16
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	96.11
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.79
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.58
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	93.92
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	93.09
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	92.94
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	91.57
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	91.53
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	88.93
2crg_A	70	Metastasis associated protein MTA3; transcription	87.97

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.26  E-value=3.1e-12  Score=90.51  Aligned_cols=40  Identities=20%  Similarity=0.154  Sum_probs=38.5

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||++|..||++|||||+++||+||+.+++++
T Consensus        18 ~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A           18 ELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999888

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.10  E-value=5e-11  Score=88.83  Aligned_cols=40  Identities=43%  Similarity=0.812  Sum_probs=36.7

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||++|+.||++|||||+++|||||+.+++++
T Consensus        65 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           65 RIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999998876

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=5.2e-11  Score=82.67  Aligned_cols=39  Identities=23%  Similarity=0.299  Sum_probs=37.4

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++++++|++|..||+ |+|||+++||+||+.+|++.
T Consensus        18 ~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~   56 (66)
T 2din_A           18 EKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKA   56 (66)
T ss_dssp             HHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChH
Confidence            5899999999999999999 99999999999999999888

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.08  E-value=7.8e-11  Score=78.02  Aligned_cols=39  Identities=28%  Similarity=0.441  Sum_probs=36.4

Q ss_pred             HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHh
Q 029398            3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKK   41 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrk   41 (194)
                      ++|++++.+||+ +|..||++|||||+++|++||+.+|+.
T Consensus        12 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A           12 EKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            589999999998 999999999999999999999998753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.07  E-value=6.3e-11  Score=89.07  Aligned_cols=40  Identities=25%  Similarity=0.399  Sum_probs=37.9

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||++|+.||++|||||+++|||||+.++++.
T Consensus        62 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~  101 (107)
T 2k9n_A           62 MLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR  101 (107)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence            5899999999999999999999999999999999988776

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.05  E-value=5.5e-11  Score=85.52  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=33.3

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~   38 (194)
                      ++|+++|+++|++|+.||+.| |||+++|||||+.+
T Consensus        32 ~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A           32 EKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            589999999999999999999 99999999999973

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.05  E-value=5.9e-11  Score=80.86  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+|| ++|..||++|||||+++||+||+.+|+..
T Consensus        17 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A           17 EQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            58999999999 69999999999999999999999988765

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.03  E-value=1.2e-10  Score=90.40  Aligned_cols=40  Identities=40%  Similarity=0.742  Sum_probs=38.7

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||++|+.||++|||||+++|||||+.+|+++
T Consensus        63 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~  102 (131)
T 3zqc_A           63 ETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR  102 (131)
T ss_dssp             HHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999988

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.02  E-value=1.9e-10  Score=76.29  Aligned_cols=38  Identities=37%  Similarity=0.592  Sum_probs=35.5

Q ss_pred             HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lr   40 (194)
                      ++|++++.+||+ +|..||+.|+|||+++||+||+.+|+
T Consensus        12 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A           12 QRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             HHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            589999999997 59999999999999999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.59  E-value=2.7e-11  Score=89.36  Aligned_cols=40  Identities=23%  Similarity=0.198  Sum_probs=37.9

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||++|+.||++|||||+++|||||+.+|++.
T Consensus        25 ~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           25 GTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            5799999999999999999999999999999999988876

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.02  E-value=1.3e-10  Score=89.56  Aligned_cols=40  Identities=40%  Similarity=0.805  Sum_probs=37.5

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||++|+.||++|||||+++|||||+.+++++
T Consensus        88 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           88 RIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999998876

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.01  E-value=2e-10  Score=76.63  Aligned_cols=40  Identities=28%  Similarity=0.203  Sum_probs=36.6

Q ss_pred             HHHHHHHHccC-CCHHHHhccCC--CCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLP--GRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~Lp--GRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+|| ++|+.||..|+  |||+++|++||+.+++.+
T Consensus        11 ~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A           11 KNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            58999999999 69999999999  999999999999988753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.95  E-value=5.2e-10  Score=78.31  Aligned_cols=40  Identities=28%  Similarity=0.203  Sum_probs=37.9

Q ss_pred             HHHHHHHHccC-CCHHHHhccCC--CCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLP--GRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~Lp--GRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+|| ++|+.||+.|+  |||+++||+||+.+|+..
T Consensus        19 ~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~   61 (69)
T 1ity_A           19 KNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   61 (69)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCC
Confidence            58999999999 69999999999  999999999999998877

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.95  E-value=5.7e-10  Score=86.14  Aligned_cols=40  Identities=38%  Similarity=0.434  Sum_probs=37.2

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||++|+.||++|||||+++||+||+.++++.
T Consensus        71 ~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           71 ALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999976655

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.94  E-value=4.7e-10  Score=76.77  Aligned_cols=39  Identities=13%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKK   41 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrk   41 (194)
                      ++|++++.+|| ++|..||++|||||+++||+||+.+|..
T Consensus        17 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A           17 MALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            57999999999 8999999999999999999999988754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=3e-10  Score=79.61  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=37.9

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+|| ++|..||++|+|||+++|++||+.+|+..
T Consensus        18 ~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~   58 (70)
T 2dim_A           18 EILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPS   58 (70)
T ss_dssp             HHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSS
T ss_pred             HHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCc
Confidence            58999999999 89999999999999999999999998876

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=9.4e-10  Score=77.91  Aligned_cols=40  Identities=23%  Similarity=0.253  Sum_probs=37.6

Q ss_pred             HHHHHHHHccC------CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF------SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G------nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++.+||      ++|..||++|+|||+++|++||+.+|++.
T Consensus        17 ~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A           17 KKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             HHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            58999999999      79999999999999999999999888877

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.84  E-value=1.6e-09  Score=93.47  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=38.5

Q ss_pred             HHHHHHHHccCCC------HHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSR------WSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gnk------Ws~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|+++|++      |..||++|||||+|+|||||+.+|+++
T Consensus        17 ~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~   62 (246)
T 1ign_A           17 EFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR   62 (246)
T ss_dssp             HHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence            6899999999986      999999999999999999999999998

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.79  E-value=3.3e-09  Score=72.25  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=34.5

Q ss_pred             HHHHHHHHccC-CCHHHHhccCC-CCChHHHHHHHHHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLP-GRTDNEIKNVWHTHL   39 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~Lp-GRTdn~IKNrW~~~L   39 (194)
                      ++|++++.+|| .+|..||++++ |||+++|++||+.++
T Consensus        18 ~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A           18 LLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            58999999999 89999999999 999999999998754

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.78  E-value=3e-09  Score=76.37  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~~Lr   40 (194)
                      ++|++++++||    ++|..||++|||||+++||+||+.+++
T Consensus        27 ~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           27 KLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            57889999999    899999999999999999999998653

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.74  E-value=7.3e-09  Score=72.21  Aligned_cols=40  Identities=25%  Similarity=0.283  Sum_probs=35.7

Q ss_pred             HHHHHHHHccC-CCHHHHhccCC--CCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLP--GRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~Lp--GRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+|| .+|+.||+.+|  |||+.+||+||+.+++..
T Consensus        20 ~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A           20 EWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            58999999999 58999999866  999999999999977654

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.73  E-value=8.4e-09  Score=75.69  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             HHHHHHHHccCC-CHHHHhcc----CCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~----LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++++||+ +|+.|++.    |+|||+++||+||+.++++.
T Consensus         9 ~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            9 EALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            689999999998 99999996    89999999999999988765

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.61  E-value=3.4e-08  Score=69.28  Aligned_cols=39  Identities=15%  Similarity=0.226  Sum_probs=35.7

Q ss_pred             HHHHHHHHccCCCHHHHh---ccCCCCChHHHHHHHHHhhHh
Q 029398            3 QVLYLINFAPFSRWSAIA---GRLPGRTDNEIKNVWHTHLKK   41 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA---~~LpGRTdn~IKNrW~~~Lrk   41 (194)
                      +.|++.|++||.+|+.|+   ..|+|||+..||++|+.++|+
T Consensus        17 ~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A           17 NYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            679999999999999999   688999999999999996654

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.58  E-value=3.7e-08  Score=73.65  Aligned_cols=40  Identities=20%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++++||    ++|..||++|||||+++||+||+.+++..
T Consensus        17 ~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A           17 KAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             HHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            47888999996    89999999999999999999999976543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.51  E-value=3.7e-08  Score=71.37  Aligned_cols=36  Identities=14%  Similarity=0.108  Sum_probs=34.2

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~   38 (194)
                      ++|++++.+||.+|..||++++|||+.+|++||+.+
T Consensus        27 ~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           27 LLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            589999999999999999999999999999999875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.48  E-value=7.9e-08  Score=75.18  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=36.6

Q ss_pred             HHHHHHHHccCC-CHHHHhcc----CCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~----LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|++||+ +|+.|++.    |+|||+++||+||+.++++.
T Consensus        26 ~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           26 EALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             HHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            689999999998 99999998    49999999999999988754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.42  E-value=2e-07  Score=71.21  Aligned_cols=40  Identities=20%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             HHHHHHHHccCC-CHHHHhccC----CCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGRL----PGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~L----pGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++.|.+||+ +|+.|++.+    +|||+++||+||+.++++.
T Consensus        22 ~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A           22 EALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             HHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            689999999997 999999965    8999999999999987655

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.42  E-value=1.8e-07  Score=69.38  Aligned_cols=40  Identities=33%  Similarity=0.549  Sum_probs=36.3

Q ss_pred             HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++.+||. +|..||+.|||||+.+|+.||+.+|...
T Consensus        13 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   53 (105)
T 1gv2_A           13 QRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   53 (105)
T ss_dssp             HHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCc
Confidence            589999999997 6999999999999999999999987543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.42  E-value=1.7e-07  Score=72.22  Aligned_cols=40  Identities=23%  Similarity=0.404  Sum_probs=37.3

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++.+||.+|..||+.||||++.+|+.||+.+|...
T Consensus        20 ~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   59 (126)
T 3osg_A           20 EMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS   59 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence            6899999999999999999999999999999999987654

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=98.39  E-value=1.6e-07  Score=74.50  Aligned_cols=40  Identities=33%  Similarity=0.549  Sum_probs=36.7

Q ss_pred             HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||+ +|..||+.|||||+++|++||+.+|...
T Consensus        67 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           67 QRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence            589999999996 6999999999999999999999988654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.38  E-value=2.3e-07  Score=71.35  Aligned_cols=40  Identities=33%  Similarity=0.498  Sum_probs=36.5

Q ss_pred             HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++.+||. +|..||..|||||+++|++||+.+|...
T Consensus        36 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   76 (128)
T 1h8a_C           36 QRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE   76 (128)
T ss_dssp             HHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence            589999999996 6999999999999999999999987654

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.29  E-value=4.4e-07  Score=67.92  Aligned_cols=40  Identities=13%  Similarity=0.232  Sum_probs=36.7

Q ss_pred             HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++.+||. +|..||..|||||+.+|+.||+.+|...
T Consensus        10 ~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~   50 (107)
T 2k9n_A           10 LKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA   50 (107)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence            589999999996 8999999999999999999999987654

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.29  E-value=4.4e-07  Score=71.01  Aligned_cols=40  Identities=23%  Similarity=0.324  Sum_probs=36.3

Q ss_pred             HHHHHHHHccCC-CHHHHhcc----CCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~----LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|++||. +|+.|++.    |+|||+++||+||+.++++.
T Consensus        40 ~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           40 ELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             HHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            689999999997 99999997    49999999999999987655

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.16  E-value=9.9e-07  Score=68.18  Aligned_cols=40  Identities=20%  Similarity=0.414  Sum_probs=36.7

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++.+|| ..|..||..|||||+.+|+.||+.+|...
T Consensus        11 ~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   51 (131)
T 3zqc_A           11 DLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPA   51 (131)
T ss_dssp             HHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCcc
Confidence            58999999999 68999999999999999999999988654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=1.8e-06  Score=59.20  Aligned_cols=37  Identities=8%  Similarity=-0.029  Sum_probs=34.2

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHL   39 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~L   39 (194)
                      +++++++.+||.+|..||..|||||..+|+++|+...
T Consensus        21 ~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           21 EIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            5788999999999999999999999999999998753

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.82  E-value=2.5e-05  Score=58.48  Aligned_cols=40  Identities=18%  Similarity=0.149  Sum_probs=36.8

Q ss_pred             HHHHHHHHccCCCHHHHhccC-----CCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRL-----PGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~L-----pGRTdn~IKNrW~~~Lrkr   42 (194)
                      +.|++|+.+||.||..|+.++     ++||...||+||+...++.
T Consensus        39 d~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l   83 (93)
T 3hm5_A           39 DHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL   83 (93)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence            579999999999999999999     5899999999999977666

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.76  E-value=1.2e-05  Score=69.10  Aligned_cols=39  Identities=10%  Similarity=0.048  Sum_probs=36.0

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKK   41 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrk   41 (194)
                      +++++++.+||+.|..||+.++|||.++||++|+.+.++
T Consensus       142 ~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          142 LLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999987655

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.74  E-value=1.7e-05  Score=56.52  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHHhh
Q 029398            3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHTHL   39 (194)
Q Consensus         3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~~L   39 (194)
                      ++|.++++.|+    .||..||+++ |||.++|++||+.++
T Consensus        17 k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A           17 SQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             HHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            57888899997    7899999998 999999999999854

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.70  E-value=6e-06  Score=65.39  Aligned_cols=40  Identities=28%  Similarity=0.432  Sum_probs=11.0

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++.+|| .+|..||..||||++.+|+.||..+|...
T Consensus        15 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   55 (159)
T 1h89_C           15 EKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   55 (159)
T ss_dssp             ----------------------------CHHHHHHTTTCTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCC
Confidence            57899999999 58999999999999999999999887643

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.73  E-value=0.00073  Score=48.44  Aligned_cols=40  Identities=20%  Similarity=0.211  Sum_probs=32.7

Q ss_pred             HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      .+|.++...|+    .+|..||..+||||..+|+.||..+++.+
T Consensus        17 k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~   60 (73)
T 1wgx_A           17 QKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             HHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             HHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            35566667776    57999999999999999999999875544

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.16  E-value=0.0043  Score=46.54  Aligned_cols=38  Identities=16%  Similarity=0.257  Sum_probs=33.7

Q ss_pred             HHHHHHHHccCC---CHHHHhccCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAPFS---RWSAIAGRLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~Gn---kWs~IA~~LpGRTdn~IKNrW~~~Lr   40 (194)
                      +.|+...++-|.   .|+.||+.|..|+.++|++|++.+++
T Consensus        42 R~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           42 RVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             HHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            467888899997   89999999999999999999998653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=96.11  E-value=0.0046  Score=42.15  Aligned_cols=38  Identities=16%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             HHHHHHHHcc--------CCC-HHHHhc-cCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAP--------FSR-WSAIAG-RLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~--------Gnk-Ws~IA~-~LpGRTdn~IKNrW~~~Lr   40 (194)
                      ++|++.+.++        ||+ |..+|. .+|+||-.++|+||...|+
T Consensus        11 ~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A           11 VAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             HHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5788999888        755 999999 8999999999999998764

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.79  E-value=0.0015  Score=46.53  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             HHHHHHHHccCC---CHHHHhccCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAPFS---RWSAIAGRLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~Gn---kWs~IA~~LpGRTdn~IKNrW~~~Lr   40 (194)
                      +.|+..+++-|.   .|+.||+.| +|+.++|++|++.+++
T Consensus        23 R~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           23 RVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            457778889998   899999999 9999999999998653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.58  E-value=0.022  Score=42.58  Aligned_cols=40  Identities=18%  Similarity=0.148  Sum_probs=35.9

Q ss_pred             HHHHHHHHccCCCHHHHhccCC-----CCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLP-----GRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~Lp-----GRTdn~IKNrW~~~Lrkr   42 (194)
                      ..|++|.++|+-||..|+.++.     .||-..+|.||+...++-
T Consensus        39 d~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l   83 (93)
T 4iej_A           39 DHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL   83 (93)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            4689999999999999999984     799999999999976665

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=93.92  E-value=0.016  Score=41.75  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=26.6

Q ss_pred             HHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHH
Q 029398            4 VLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHT   37 (194)
Q Consensus         4 lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~   37 (194)
                      ++.++-+.|+    .||.+||+.+||||..+|+.++..
T Consensus        30 ~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           30 AFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL   67 (74)
T ss_dssp             HHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred             HHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3444555566    489999999999999999998764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=93.09  E-value=0.049  Score=46.99  Aligned_cols=28  Identities=14%  Similarity=0.191  Sum_probs=26.2

Q ss_pred             CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398           15 RWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus        15 kWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      .|..||+.+|+||++++|+||...|++.
T Consensus       173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          173 FFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence            7999999999999999999999888765

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=92.94  E-value=0.13  Score=37.89  Aligned_cols=36  Identities=14%  Similarity=-0.009  Sum_probs=32.1

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~   38 (194)
                      ++..+.+..||..|..||..||+||..+|-..+...
T Consensus        52 ~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           52 ETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             HHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            466788999999999999999999999999988763

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.57  E-value=0.26  Score=33.50  Aligned_cols=36  Identities=11%  Similarity=-0.008  Sum_probs=31.0

Q ss_pred             HHHHHHHHccCCCHHHHhc-cCCCCChHHHHHHHHHh
Q 029398            3 QVLYLINFAPFSRWSAIAG-RLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~-~LpGRTdn~IKNrW~~~   38 (194)
                      ++-.+.+.+||..|..|++ .|++||-.+|...+...
T Consensus        18 ~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A           18 KRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            3556788999999999999 59999999999988753

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=91.53  E-value=0.1  Score=48.86  Aligned_cols=36  Identities=11%  Similarity=0.023  Sum_probs=33.0

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~   38 (194)
                      +++++.+.+||..|..||..+..||..+||++|..+
T Consensus       389 ~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          389 LLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            467889999999999999999999999999999864

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=88.93  E-value=0.19  Score=35.54  Aligned_cols=40  Identities=18%  Similarity=0.368  Sum_probs=29.6

Q ss_pred             HHHHHHHHccC----------CCHHHHhccCC----CCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPF----------SRWSAIAGRLP----GRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~G----------nkWs~IA~~Lp----GRTdn~IKNrW~~~Lrkr   42 (194)
                      .+||+++.++.          ..|..||..|.    .||+.+|+.+|..+.+..
T Consensus        13 ~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A           13 RSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            35666665533          25999999873    799999999999954443

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=87.97  E-value=0.7  Score=32.01  Aligned_cols=35  Identities=11%  Similarity=-0.053  Sum_probs=30.6

Q ss_pred             HHHHHHHHccCCCHHHHhc-cCCCCChHHHHHHHHH
Q 029398            3 QVLYLINFAPFSRWSAIAG-RLPGRTDNEIKNVWHT   37 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~-~LpGRTdn~IKNrW~~   37 (194)
                      ++-.+.+..||..|..|++ .||+||-.+|...+..
T Consensus        17 ~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A           17 CLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             HHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            3456788999999999999 5999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-07
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	9e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-06
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	8e-05
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-04
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-04
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	0.003

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 2e-07
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 14 SRWSAIAGRLPGRTDNEIKNVWHTHLK 40
          +RW+ IA  LPGRTDN IKN W++ ++
Sbjct: 21 NRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (101), Expect = 9e-07
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query: 16 WSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKANTNTNNNNNSDDHKQNSK 71
          +  I+  +P  T N I++ +  +L K+             +       DD     K
Sbjct: 29 YDEISHYVPNHTGNSIRHRFRVYLSKRL------EYVYEVDKFGKLVRDDDGNLIK 78

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 8e-06
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 14 SRWSAIAGRLPGRTDNEIKNVWHTHLKK 41
            +  IA  L  +T  E    ++   K 
Sbjct: 37 KNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 4/26 (15%), Positives = 15/26 (57%)

Query: 16 WSAIAGRLPGRTDNEIKNVWHTHLKK 41
          + AI+  +  ++  ++KN +  + ++
Sbjct: 27 FQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 8e-05
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 16 WSAIAGRLPGRTDNEIKNVWHTHLKKK 42
          W+ I+  +  RT  ++K+    + K K
Sbjct: 24 WTKISKLIGSRTVLQVKSYARQYFKNK 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 5  LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLK 40
            L+       W  IA  LP RTD + ++ W   L 
Sbjct: 13 KKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 5  LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLK 40
          + L+      RWS IA  L GR   + +  WH HL 
Sbjct: 15 IKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.003
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 15 RWSAIAGRLPGRTDNEIKNVWH 36
           W  IA  +P ++  +    + 
Sbjct: 37 CWDKIARCVPSKSKEDCIARYK 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.42
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.99
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.97
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.94
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	98.91
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.66
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.62
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.58
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.57
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.49
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.46
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.37
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	98.36
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.36
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	95.05
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	93.68
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	86.91
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	80.85

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=4.8e-14  Score=91.89  Aligned_cols=38  Identities=42%  Similarity=0.803  Sum_probs=36.2

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lr   40 (194)
                      ++|+++|+++|++|+.||++|||||+++|||||+.+||
T Consensus        10 ~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2          10 RIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             HHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            68999999999999999999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.4e-10  Score=78.56  Aligned_cols=40  Identities=20%  Similarity=0.154  Sum_probs=37.7

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++..||.+|..||++|||||+.+||+||+.++++.
T Consensus        11 ~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1          11 ELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999888776

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.8e-10  Score=75.92  Aligned_cols=39  Identities=36%  Similarity=0.569  Sum_probs=36.0

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKK   41 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrk   41 (194)
                      ++|++++.+|| .+|..||++|+|||+++|++||+.+|+.
T Consensus        12 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_          12 QRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             HHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            58999999999 5899999999999999999999998753

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=3.3e-10  Score=73.80  Aligned_cols=38  Identities=29%  Similarity=0.449  Sum_probs=35.5

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lr   40 (194)
                      ++|++++.++| .+|..||++|||||+.+|++||+.+|.
T Consensus        10 ~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_          10 EKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            58999999999 579999999999999999999999875

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=2.9e-10  Score=82.22  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=38.4

Q ss_pred             HHHHHHHHccCCC------HHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFSR------WSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gnk------Ws~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++.++|++      |..||++|||||+++||+||+.+|..+
T Consensus        10 ~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~   55 (86)
T d1igna1          10 EFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR   55 (86)
T ss_dssp             HHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCcc
Confidence            5899999999986      999999999999999999999999999

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.5e-09  Score=67.55  Aligned_cols=37  Identities=24%  Similarity=0.179  Sum_probs=33.2

Q ss_pred             HHHHHHHHccCC-CHHHHhccCC--CCChHHHHHHHHHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGRLP--GRTDNEIKNVWHTHL   39 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~Lp--GRTdn~IKNrW~~~L   39 (194)
                      ++|++++.+||. +|+.||+.++  |||+.+|++||+.+.
T Consensus        11 ~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_          11 KNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            589999999996 8999999864  999999999999854

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-08  Score=65.79  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=33.3

Q ss_pred             HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHh
Q 029398            3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~   38 (194)
                      ++|++++++|| .+|..||++|+|||+.+|++||+.+
T Consensus        10 ~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1          10 MALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            58999999999 5799999999999999999999864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.1e-08  Score=66.21  Aligned_cols=40  Identities=23%  Similarity=0.220  Sum_probs=35.3

Q ss_pred             HHHHHHHHccCC-CHHHHhcc--CCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGR--LPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~--LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++++||. +|..||+.  |+|||+.+||+||+.+++..
T Consensus        11 ~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_          11 EWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            589999999995 89999997  56999999999999977653

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.57  E-value=2.3e-08  Score=67.53  Aligned_cols=39  Identities=21%  Similarity=0.299  Sum_probs=34.3

Q ss_pred             HHHHHHHHccCC----CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS----RWSAIAGRLPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn----kWs~IA~~LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|++++++||.    +|..||.+|||||+++|++||+.+ .+.
T Consensus        10 ~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L-~~d   52 (63)
T d2cjja1          10 KAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL-VED   52 (63)
T ss_dssp             HHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHH-HHH
Confidence            579999999995    699999999999999999999764 444

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=3.6e-08  Score=72.60  Aligned_cols=39  Identities=15%  Similarity=0.247  Sum_probs=35.9

Q ss_pred             HHHHHHHHccCCC---HHHHhccCCCCChHHHHHHHHHhhHh
Q 029398            3 QVLYLINFAPFSR---WSAIAGRLPGRTDNEIKNVWHTHLKK   41 (194)
Q Consensus         3 ~lLi~l~~e~Gnk---Ws~IA~~LpGRTdn~IKNrW~~~Lrk   41 (194)
                      ++|++.++++|++   |..||+.|+||++++|||||+.+++-
T Consensus        42 riIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          42 RVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             HHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            5899999999988   99999999999999999999986653

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.5e-08  Score=64.54  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             HHHHHHHHccCC----CHHHHhccCCCCChHHHHHHHHH
Q 029398            3 QVLYLINFAPFS----RWSAIAGRLPGRTDNEIKNVWHT   37 (194)
Q Consensus         3 ~lLi~l~~e~Gn----kWs~IA~~LpGRTdn~IKNrW~~   37 (194)
                      ++|++++.+||.    +|..||.+|||||+.+|++||+.
T Consensus        21 ~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          21 KLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            589999999995    69999999999999999999975

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.7e-08  Score=66.24  Aligned_cols=36  Identities=14%  Similarity=-0.009  Sum_probs=34.0

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH   38 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~   38 (194)
                      ++|++++.+||..|..||++|||||..+|+++|+..
T Consensus        26 ~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          26 ETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             HHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            688999999999999999999999999999999864

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.36  E-value=1.8e-07  Score=66.26  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             HHHHHHHHccCC-CHHHHhcc----CCCCChHHHHHHHHHhhHhh
Q 029398            3 QVLYLINFAPFS-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK   42 (194)
Q Consensus         3 ~lLi~l~~e~Gn-kWs~IA~~----LpGRTdn~IKNrW~~~Lrkr   42 (194)
                      ++|+++|.+||. +|+.|++.    |+|||+.+||.||+.+|+..
T Consensus         9 ~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           9 EALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            589999999995 89999985    79999999999999988766

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=9.4e-08  Score=64.51  Aligned_cols=39  Identities=10%  Similarity=0.048  Sum_probs=35.8

Q ss_pred             HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHh
Q 029398            3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKK   41 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrk   41 (194)
                      ++|++++..||..|..||++|||||..+|+++|+.+.++
T Consensus        14 ~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1          14 LLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            588999999999999999999999999999999986543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.014  Score=37.70  Aligned_cols=35  Identities=11%  Similarity=-0.025  Sum_probs=31.2

Q ss_pred             HHHHHHHHccCCCHHHHhcc-CCCCChHHHHHHHHH
Q 029398            3 QVLYLINFAPFSRWSAIAGR-LPGRTDNEIKNVWHT   37 (194)
Q Consensus         3 ~lLi~l~~e~GnkWs~IA~~-LpGRTdn~IKNrW~~   37 (194)
                      ++..+.+.+||..|..|++. +|+||-.+|.+.+..
T Consensus        10 ~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1          10 CLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             HHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            46788999999999999985 699999999999875

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.022  Score=37.42  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHH
Q 029398            3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHT   37 (194)
Q Consensus         3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~   37 (194)
                      .+|.++..+|.    .||..||..+ |||..+|..|++.
T Consensus        10 ~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~   47 (59)
T d2cqqa1          10 SQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQ   47 (59)
T ss_dssp             HHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHH
Confidence            45666677774    7899999999 9999999998875

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.91  E-value=0.37  Score=30.14  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=28.3

Q ss_pred             HHHHHHHccCCCHHHHhccC---CCCChHHHHHHHHH
Q 029398            4 VLYLINFAPFSRWSAIAGRL---PGRTDNEIKNVWHT   37 (194)
Q Consensus         4 lLi~l~~e~GnkWs~IA~~L---pGRTdn~IKNrW~~   37 (194)
                      -|..-++.||+.|..|-=.+   |||+...+...++.
T Consensus        11 YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1          11 YLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             HHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHh
Confidence            47788999999999997655   79999988777665

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.85  E-value=0.83  Score=29.47  Aligned_cols=38  Identities=16%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             HHHHHHHHcc--------CCC-HHHHhc-cCCCCChHHHHHHHHHhhH
Q 029398            3 QVLYLINFAP--------FSR-WSAIAG-RLPGRTDNEIKNVWHTHLK   40 (194)
Q Consensus         3 ~lLi~l~~e~--------Gnk-Ws~IA~-~LpGRTdn~IKNrW~~~Lr   40 (194)
                      ++|++.++++        ||+ |..+++ .+|.+|=...|+||..+|+
T Consensus        11 ~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_          11 VAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             HHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4677777765        333 999985 6899999999999988775