Citrus Sinensis ID: 029425

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY
Secondary Structure (PSIPRED)
cEEEEEccccccccEEEEEEcccccccccEEEEEEEEcccHHHHHHHHcccccccccccccccEEEEEEEEEcccccccccccEEEEEEcccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccEEEEEcccccccccccEEEEEEEEcccHHHHHHHccccccccccccccccEEEEEEEEEcccccccccccEEEEEEccccEEEEEEEccHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEEccc
Coil and Loop (DISEMBL)
mkaivitqpgspevlqlqevedpqikddEVLIKVEATALNRadtlqrkgsypppkgaspypglecsgtilsvgknvsrwkvGDQVCALlggggyaekvavpagqvlpvpsgvslkdaaafpevACTVWSTVFmtshlspgesflvhggssgiGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY
Flexible Loop (DISEMBL)
mkaivitqpgspevlqlqeVEDPQIKDDEVLIKVEATalnradtlqrkgsypppkgaspypGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATrfilcqpfniRVFIGFGY
Low Complexity Region (SEG)
MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY
Disordered region (IsUnstruct)
*****************************VLIKVEA*************************GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF**
Disordered Region (DISOPRED)
MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY
Disordered Region (DISEMBL)
MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY
Disordered Region (DISPRO)
MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q53FA7	332	Quinone oxidoreductase PI	no	no	0.989	0.575	0.417	2e-35
Q8JFV8	484	Synaptic vesicle membrane	no	no	0.932	0.371	0.357	4e-22
P96202	2188	Phthiocerol synthesis pol	no	no	0.860	0.075	0.347	9e-22
Q7TXL8	2188	Phthiocerol/phenolphthioc	no	no	0.860	0.075	0.347	9e-22
O97764	330	Zeta-crystallin OS=Bos ta	no	no	0.880	0.515	0.390	6e-21
P47199	331	Quinone oxidoreductase OS	yes	no	0.886	0.516	0.388	1e-20
Q5R4S7	329	Quinone oxidoreductase OS	no	no	0.886	0.519	0.377	1e-20
Q6AYT0	329	Quinone oxidoreductase OS	yes	no	0.886	0.519	0.388	2e-20
Q80TB8	417	Synaptic vesicle membrane	no	no	0.906	0.419	0.327	2e-20
Q9HCJ6	419	Synaptic vesicle membrane	no	no	0.906	0.417	0.327	1e-19

>sp|Q53FA7|QORX_HUMAN Quinone oxidoreductase PIG3 OS=Homo sapiens GN=TP53I3 PE=1 SV=2

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 112/194 (57%), Gaps = 3/194 (1%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M A+   +PG PE L ++EV  P   + EVL+KV A+ALNRAD +QR+G Y PP GAS  
Sbjct: 1   MLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNI 60

Query: 61  PGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
            GLE SG +  +G      WK+GD   ALL GGG A+ V VP G ++P+P G++L  AAA
Sbjct: 61  LGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAA 120

Query: 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
            PE   T +  + +  ++  G+  L+H G SG+GT AIQ+ +  G    VTAG   +  +
Sbjct: 121 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQM 180

Query: 180 CQPFNIRVFIGFGY 193
            +        GF Y
Sbjct: 181 AEKLGAAA--GFNY 192

May be involved in the generation of reactive oxygen species (ROS). Has low NADPH-dependent beta-naphthoquinone reductase activity, with a preference for 1,2-beta-naphthoquinone over 1,4-beta-naphthoquinone. Has low NADPH-dependent diamine reductase activity (in vitro).
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8JFV8|VAT1_DANRE Synaptic vesicle membrane protein VAT-1 homolog OS=Danio rerio GN=vat1 PE=2 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 2/182 (1%)

Query: 2   KAIVITQPGSPEVLQLQEVE-DPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           +A+V+T  G  + ++LQ  +  P +K  EV+++V+   LN AD + R+G Y         
Sbjct: 72  RALVLTGYGGYDKVKLQVKKGKPALKSGEVMVRVKMCGLNFADLMARQGLYDRLPSPPVT 131

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG+ECSG I +VG+ V+  KVGD+V  L   G + E V V +     +P G+S ++AAA 
Sbjct: 132 PGMECSGVIEAVGEEVTDRKVGDKVLVLNRSGMWQEVVVVASTHTFLMPEGMSFEEAAAL 191

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGLATRFIL 179
           P    T +  +F   HL P +S LVH  + G+G  A Q+ K    V VF TA  +   ++
Sbjct: 192 PVNYITAYMMLFDFGHLRPNQSVLVHMAAGGVGIAATQLCKTVNDVTVFGTASASKHEVI 251

Query: 180 CQ 181
            Q
Sbjct: 252 SQ 253

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P96202|PPSC_MYCTU Phthiocerol synthesis polyketide synthase type I PpsC OS=Mycobacterium tuberculosis GN=ppsC PE=1 SV=2

 Score =  103 bits (256), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 6    ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLEC 65
            I QPG  + L + EV+  + + D+V ++V A  LN +D L+  G YP   GA+P  G EC
Sbjct: 1463 IDQPGRLDALNVHEVKRGRPQGDQVEVRVVAAGLNFSDVLKAMGVYPGLDGAAPVIGGEC 1522

Query: 66   SGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC 125
             G + ++G  V   +VG +V A  G G +   +   A  V+P+P  ++  +AA F     
Sbjct: 1523 VGYVTAIGDEVDGVEVGQRVIAF-GPGTFGTHLGTIADLVVPIPDTLADNEAATFGVAYL 1581

Query: 126  TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
            T W ++     LSPGE  L+H  + G+G  A+ + K  G R++ TAG
Sbjct: 1582 TAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG 1628

Involved in the elongation of either C22-24 fatty acids by the addition of malonyl-CoA and methylmalonyl-CoA extender units to yield phthiocerol derivatives.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q7TXL8|PPSC_MYCBO Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsC OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ppsC PE=1 SV=1

 Score =  103 bits (256), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 6    ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLEC 65
            I QPG  + L + EV+  + + D+V ++V A  LN +D L+  G YP   GA+P  G EC
Sbjct: 1463 IDQPGRLDALNVHEVKRGRPQGDQVEVRVVAAGLNFSDVLKAMGVYPGLDGAAPVIGGEC 1522

Query: 66   SGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC 125
             G + ++G  V   +VG +V A  G G +   +   A  V+P+P  ++  +AA F     
Sbjct: 1523 VGYVTAIGDEVDGVEVGQRVIAF-GPGTFGTHLGTIADLVVPIPDTLADNEAATFGVAYL 1581

Query: 126  TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
            T W ++     LSPGE  L+H  + G+G  A+ + K  G R++ TAG
Sbjct: 1582 TAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG 1628

Involved in the elongation of either C22-24 fatty acids or p-hydroxyphenylalkanoic acids by the addition of malonyl-CoA and methylmalonyl-CoA extender units to yield phthiocerol and phenolphthiocerol derivatives, respectively.

Mycobacterium bovis (taxid: 1765)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|O97764|QOR_BOVIN Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2

 Score =  100 bits (249), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 4/174 (2%)

Query: 1   MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M+AI + + G PEVL+LQ +V  P  KD +VLIKV+A  +N  DT  R G++   K   P
Sbjct: 8   MRAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHNI-KPLLP 66

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDA 117
           Y PG + +G I +VG++VS +K GD+V       GGYAE        V  +P  +  K  
Sbjct: 67  YTPGFDVAGIIEAVGESVSAFKKGDRVFTTRTISGGYAEYALAADHTVYTLPEKLDFKQG 126

Query: 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171
           AA      T +  +  ++ + PGES LVHG S G+G  A Q+ +  G++V  TA
Sbjct: 127 AAIGIPYFTAYRALLHSACVKPGESVLVHGASGGVGIAACQIARAYGLKVLGTA 180

Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding (By similarity). Has minimal or no quinone reductase activity. Binds strongly to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|P47199|QOR_MOUSE Quinone oxidoreductase OS=Mus musculus GN=Cryz PE=2 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 4/175 (2%)

Query: 1   MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M+AI + + G PEVL+LQ +V  P  +  +VLIKV A  +N  +T  R G+Y   K A P
Sbjct: 8   MRAIRVFEFGGPEVLKLQSDVVVPVPQSHQVLIKVHACGVNPVETYIRSGAYSR-KPALP 66

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQV-CALLGGGGYAEKVAVPAGQVLPVPSGVSLKDA 117
           Y PG + +G I SVG  VS +K GD+V C     GGYAE        + P+P  ++ +  
Sbjct: 67  YTPGSDVAGIIESVGDKVSAFKKGDRVFCYSTVSGGYAEFALAADDTIYPLPETLNFRQG 126

Query: 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           AA      T    +F ++    GES LVHG S G+G    Q+ +  G++V  TAG
Sbjct: 127 AALGIPYFTACRALFHSARARAGESVLVHGASGGVGLATCQIARAHGLKVLGTAG 181

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q5R4S7|QOR_PONAB Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 95/175 (54%), Gaps = 4/175 (2%)

Query: 1   MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M+A+ + + G PEVL+LQ ++  P  KD + LIKV A  +N  +T  R G+Y   K   P
Sbjct: 8   MRAVRVFEFGGPEVLKLQSDIAVPIPKDHQALIKVHACGVNPVETYIRSGTYSR-KPLLP 66

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQV-CALLGGGGYAEKVAVPAGQVLPVPSGVSLKDA 117
           Y PG + +G I +VG N S +K GD+V  +    GGYAE        V  +P  +  K  
Sbjct: 67  YTPGSDVAGVIEAVGGNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQG 126

Query: 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           AA      T +  +  ++H+  GES LVHG S G+G  A Q+ +  G++V  TAG
Sbjct: 127 AAIGIPYFTAYRALIHSAHVKAGESVLVHGASGGVGLAACQIARAYGLKVLGTAG 181

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q6AYT0|QOR_RAT Quinone oxidoreductase OS=Rattus norvegicus GN=Cryz PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 4/175 (2%)

Query: 1   MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M+AI + + G PEVL+LQ +V  P  +  +VLIKV A  +N  +T  R G+Y   K A P
Sbjct: 8   MRAIRVFEFGGPEVLKLQSDVVVPAPQSHQVLIKVHACGVNPVETYIRSGTYSR-KPALP 66

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQV-CALLGGGGYAEKVAVPAGQVLPVPSGVSLKDA 117
           Y PG + +G I SVG  VS +K GD+V C     GGYAE          P+P  +  +  
Sbjct: 67  YTPGSDVAGIIESVGDGVSAFKKGDRVFCFSTVSGGYAEFALSADNTTYPLPETLDFRQG 126

Query: 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           AA      T    +F ++    GES LVHG S G+G    Q+ +  G++V  TAG
Sbjct: 127 AALGIPYFTACRALFHSARARAGESVLVHGASGGVGLATCQIARAHGLKVLGTAG 181

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q80TB8|VAT1L_MOUSE Synaptic vesicle membrane protein VAT-1 homolog-like OS=Mus musculus GN=Vat1l PE=2 SV=2

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 2/177 (1%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      
Sbjct: 40  MRAVVLAGFGGLNKLRLSRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLV 99

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAF
Sbjct: 100 PGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAF 159

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177
           P    T ++ +F  ++L  G S LVH    G+G    Q+  C  V      G A+ F
Sbjct: 160 PMNFVTAYTMLFEIANLREGMSVLVHSAGGGVGQAVAQL--CSTVPNVTVFGTASTF 214

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9HCJ6|VAT1L_HUMAN Synaptic vesicle membrane protein VAT-1 homolog-like OS=Homo sapiens GN=VAT1L PE=1 SV=2

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 2/177 (1%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      
Sbjct: 42  MRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLV 101

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAF
Sbjct: 102 PGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAF 161

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177
           P    T +  +F  ++L  G S LVH    G+G    Q+  C  V      G A+ F
Sbjct: 162 PMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQL--CSTVPNVTVFGTASTF 216

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
224078882	325	predicted protein [Populus trichocarpa]	0.989	0.587	0.806	9e-85
255560828	325	quinone oxidoreductase, putative [Ricinu	0.989	0.587	0.785	1e-81
388523009	325	unknown [Medicago truncatula]	0.989	0.587	0.769	1e-80
357446363	325	Quinone oxidoreductase PIG3 [Medicago tr	0.989	0.587	0.769	1e-80
76160992	325	NADPH quinone oxidoreductase-like protei	0.989	0.587	0.732	1e-79
358249074	325	uncharacterized protein LOC100813682 [Gl	0.989	0.587	0.753	2e-78
449443438	325	PREDICTED: quinone oxidoreductase PIG3-l	0.989	0.587	0.748	3e-78
449501666	288	PREDICTED: quinone oxidoreductase PIG3-l	0.989	0.663	0.748	4e-78
147863686	325	hypothetical protein VITISV_008189 [Viti	0.989	0.587	0.743	9e-78
116784254	325	unknown [Picea sitchensis] gi|116785379|	0.989	0.587	0.732	2e-77

>gi|224078882|ref|XP_002305665.1| predicted protein [Populus trichocarpa] gi|222848629|gb|EEE86176.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (814), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 166/191 (86%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+VIT PG PEVLQLQEVEDPQI +DEVLIKVEATALNRADTLQR+G YPPPKGASPY
Sbjct: 1   MKAVVITTPGGPEVLQLQEVEDPQINEDEVLIKVEATALNRADTLQRQGKYPPPKGASPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PGLECSGTI +VGKNVSRWK+GDQVCALL GGGYAEKVAVPAGQVLPVP GVSLKDAAA 
Sbjct: 61  PGLECSGTIEAVGKNVSRWKIGDQVCALLSGGGYAEKVAVPAGQVLPVPQGVSLKDAAAL 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWSTVFM S LS GE+FLVHGGSSGIGTFAIQ+ K QGV+VFVTAG   +  +C
Sbjct: 121 PEVACTVWSTVFMMSRLSAGETFLVHGGSSGIGTFAIQIAKHQGVKVFVTAGSEEKLAVC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KDLGADVCINY 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560828|ref|XP_002521427.1| quinone oxidoreductase, putative [Ricinus communis] gi|223539326|gb|EEF40917.1| quinone oxidoreductase, putative [Ricinus communis]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 162/191 (84%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+VIT  G PEVLQLQEVEDPQIKDDEVLIKV ATA+NRADTLQR G +PPPKGASPY
Sbjct: 1   MKAVVITTLGGPEVLQLQEVEDPQIKDDEVLIKVHATAVNRADTLQRLGKHPPPKGASPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PGLECSGTI +VGK VSRWKVGD+VCALL GGGYAEKVAVPAGQVLPVP G+SLKDA AF
Sbjct: 61  PGLECSGTIEAVGKLVSRWKVGDEVCALLSGGGYAEKVAVPAGQVLPVPPGISLKDATAF 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWSTVFM S LS GE+FL+HGGSSGIGTFAIQM K QGVRVF+TAG   +   C
Sbjct: 121 PEVACTVWSTVFMMSRLSAGETFLIHGGSSGIGTFAIQMAKYQGVRVFITAGSQEKLAAC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KELGADVCINY 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523009|gb|AFK49566.1| unknown [Medicago truncatula]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/191 (76%), Positives = 162/191 (84%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAIVIT+PG PEVLQLQEV+DPQIKDDEVLIKV ATALNRADTLQRKG+YPPP+GASPY
Sbjct: 1   MKAIVITKPGEPEVLQLQEVQDPQIKDDEVLIKVHATALNRADTLQRKGAYPPPQGASPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PGLECSG I  VGKNVS+WK+GDQVCALL GGGYAEKVAV  GQVLPVP G+SLKDAA+F
Sbjct: 61  PGLECSGIIEFVGKNVSKWKIGDQVCALLAGGGYAEKVAVAEGQVLPVPPGISLKDAASF 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWST+FMTS LS GE+ L+HGGSSGIGTFAIQ+ K  G RVFVTAG   +   C
Sbjct: 121 PEVACTVWSTIFMTSRLSKGETLLIHGGSSGIGTFAIQIAKYLGSRVFVTAGSEEKLAFC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KSIGADVGINY 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446363|ref|XP_003593459.1| Quinone oxidoreductase PIG3 [Medicago truncatula] gi|217072752|gb|ACJ84736.1| unknown [Medicago truncatula] gi|355482507|gb|AES63710.1| Quinone oxidoreductase PIG3 [Medicago truncatula] gi|388520243|gb|AFK48183.1| unknown [Medicago truncatula]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/191 (76%), Positives = 162/191 (84%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAIVIT+PG PEVLQLQEV+DPQIKDDEVLIKV ATALNRADTLQRKG+YPPP+GASPY
Sbjct: 1   MKAIVITKPGEPEVLQLQEVQDPQIKDDEVLIKVHATALNRADTLQRKGAYPPPQGASPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PGLECSG I  VGKNVS+WK+GDQVCALL GGGYAEKVAV  GQVLPVP G+SLKDAA+F
Sbjct: 61  PGLECSGIIEFVGKNVSKWKIGDQVCALLAGGGYAEKVAVAEGQVLPVPPGISLKDAASF 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWST+FMTS LS GE+ L+HGGSSGIGTFAIQ+ K  G RVFVTAG   +   C
Sbjct: 121 PEVACTVWSTIFMTSRLSKGETLLIHGGSSGIGTFAIQIAKYLGSRVFVTAGSEEKLAFC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KSIGADVGINY 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76160992|gb|ABA40459.1| NADPH quinone oxidoreductase-like protein [Solanum tuberosum]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/191 (73%), Positives = 164/191 (85%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+VIT+PG PEVL+LQEVEDPQIKDDE+LIK+ ATA+NRADTLQR+G +PP KG S Y
Sbjct: 1   MKAVVITRPGGPEVLKLQEVEDPQIKDDEILIKIAATAINRADTLQRQGEHPPHKGESEY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PGLECSGT+ +VGK+V RWK+GDQVCAL+GGGGYAEKVAVP  QVLP+PSGVSL+DAA+F
Sbjct: 61  PGLECSGTVEAVGKDVIRWKIGDQVCALIGGGGYAEKVAVPTEQVLPIPSGVSLQDAASF 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWST+FMTS LS GE+FL+HGGSSGIGTFAIQM KC GV+VF+TAG   +   C
Sbjct: 121 PEVACTVWSTIFMTSKLSSGETFLIHGGSSGIGTFAIQMAKCIGVKVFITAGSEEKLAAC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KELGADVCINY 191

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249074|ref|NP_001240244.1| uncharacterized protein LOC100813682 [Glycine max] gi|255642907|gb|ACU22674.1| unknown [Glycine max]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/191 (75%), Positives = 160/191 (83%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAIVIT+PG PEVLQL+EVEDP + DDE+LI V AT+LNRADT QRKGSYPPPKGASPY
Sbjct: 1   MKAIVITRPGGPEVLQLEEVEDPLVGDDELLIGVHATSLNRADTFQRKGSYPPPKGASPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            GLECSGT+LS+GKNVS WK+GDQVCALL GGGYAEKVAVP GQVLPVP+GVSL DAA+F
Sbjct: 61  LGLECSGTVLSLGKNVSSWKIGDQVCALLAGGGYAEKVAVPVGQVLPVPAGVSLTDAASF 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWSTVFM S LS GE+ LVHGGSSGIGTFAIQ+ K +G RVFVTAG   +   C
Sbjct: 121 PEVACTVWSTVFMMSRLSQGETLLVHGGSSGIGTFAIQIAKYRGSRVFVTAGSEEKLAFC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KSIGADVGINY 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443438|ref|XP_004139484.1| PREDICTED: quinone oxidoreductase PIG3-like [Cucumis sativus]

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 161/191 (84%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+VI++PG  EVLQLQEV+DP I +DEVLIKVEATALNRADTLQRKG YP PKG+SPY
Sbjct: 1   MKAVVISEPGEAEVLQLQEVDDPIINEDEVLIKVEATALNRADTLQRKGFYPAPKGSSPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            GLECSG I ++GKNVSRWKVGDQVCALL GGGYAEKVAVPAGQ+LP+P GVSLKDAA+ 
Sbjct: 61  LGLECSGIIQALGKNVSRWKVGDQVCALLSGGGYAEKVAVPAGQLLPIPPGVSLKDAASL 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWSTVFMTS LS GE+ LVHGGSSGIGTFAIQ+ K QG +VFVTAG   +  +C
Sbjct: 121 PEVACTVWSTVFMTSRLSRGETLLVHGGSSGIGTFAIQIAKYQGAKVFVTAGSEEKLAVC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KDLGADVCINY 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501666|ref|XP_004161431.1| PREDICTED: quinone oxidoreductase PIG3-like [Cucumis sativus]

 Score =  295 bits (756), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 161/191 (84%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+VI++PG  EVLQLQEV+DP I +DEVLIKVEATALNRADTLQRKG YP PKG+SPY
Sbjct: 1   MKAVVISEPGEAEVLQLQEVDDPIINEDEVLIKVEATALNRADTLQRKGFYPAPKGSSPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            GLECSG I ++GKNVSRWKVGDQVCALL GGGYAEKVAVPAGQ+LP+P GVSLKDAA+ 
Sbjct: 61  LGLECSGIIQALGKNVSRWKVGDQVCALLSGGGYAEKVAVPAGQLLPIPPGVSLKDAASL 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWSTVFMTS LS GE+ LVHGGSSGIGTFAIQ+ K QG +VFVTAG   +  +C
Sbjct: 121 PEVACTVWSTVFMTSRLSRGETLLVHGGSSGIGTFAIQIAKYQGAKVFVTAGSEEKLAVC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KDLGADVCINY 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863686|emb|CAN83618.1| hypothetical protein VITISV_008189 [Vitis vinifera]

 Score =  295 bits (754), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 142/191 (74%), Positives = 162/191 (84%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+VIT PG P+VLQ+QEVE+P+I D+EVLI+VEA+ALNRADTLQRKG +PPPKG+SPY
Sbjct: 1   MKAVVITTPGDPQVLQVQEVENPEIGDNEVLIRVEASALNRADTLQRKGLHPPPKGSSPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PGLECSG I +VGK V RWKVGDQVCALL GGGYAEKV+VPAGQVLPVPSGVSLKDAAA 
Sbjct: 61  PGLECSGIIEAVGKAVVRWKVGDQVCALLAGGGYAEKVSVPAGQVLPVPSGVSLKDAAAI 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWSTVFM S L+ GE+FL+HGGSSGIGTFAIQ+ K  G RVFVTAG   +  +C
Sbjct: 121 PEVACTVWSTVFMMSRLTAGETFLIHGGSSGIGTFAIQIAKYIGARVFVTAGNEEKLAVC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KDLGADVCINY 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784254|gb|ABK23274.1| unknown [Picea sitchensis] gi|116785379|gb|ABK23700.1| unknown [Picea sitchensis] gi|224285349|gb|ACN40398.1| unknown [Picea sitchensis]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/191 (73%), Positives = 159/191 (83%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+VIT PG  +VLQ+Q+V+DPQ+KDDEVLIK+ ATALNRADTLQR+GSYPPPKGA PY
Sbjct: 1   MKAVVITTPGDADVLQIQDVDDPQVKDDEVLIKISATALNRADTLQRRGSYPPPKGAPPY 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            GLECSG I +VGKNV  WKVGD+VCALLGGGGYAEKVAV +G VLPVP G+SL++AAA 
Sbjct: 61  LGLECSGIIEAVGKNVQTWKVGDEVCALLGGGGYAEKVAVLSGHVLPVPKGISLQEAAAL 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
           PEVACTVWSTVFMTSHLS GE+FLVHGGSSGIGTFAIQ+ K  G RVFVTAG   +   C
Sbjct: 121 PEVACTVWSTVFMTSHLSKGENFLVHGGSSGIGTFAIQIAKYYGARVFVTAGSEEKLARC 180

Query: 181 QPFNIRVFIGF 191
           +     V I +
Sbjct: 181 KELGADVAINY 191

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2119682	325	AT4G21580 [Arabidopsis thalian	0.989	0.587	0.738	2.5e-72
UNIPROTKB|P72043	328	Rv3777 "Oxidoreductase" [Mycob	0.974	0.573	0.518	8.8e-47
TIGR_CMR|SPO_0231	327	SPO_0231 "alcohol dehydrogenas	0.891	0.525	0.558	7.9e-46
TIGR_CMR|SO_0640	332	SO_0640 "alcohol dehydrogenase	0.875	0.509	0.473	7e-38
UNIPROTKB|F1NUE4	337	TP53I3 "Uncharacterized protei	0.948	0.543	0.451	1e-36
UNIPROTKB|F1SDJ3	332	TP53I3 "Uncharacterized protei	0.989	0.575	0.422	1.7e-36
UNIPROTKB|Q0VC75	332	TP53I3 "Uncharacterized protei	0.989	0.575	0.422	2.1e-36
UNIPROTKB|E2RR83	332	TP53I3 "Uncharacterized protei	0.989	0.575	0.427	2.7e-36
UNIPROTKB|Q53FA7	332	TP53I3 "Quinone oxidoreductase	0.989	0.575	0.417	7.2e-36
UNIPROTKB|H7BZH6	216	TP53I3 "Quinone oxidoreductase	0.953	0.851	0.422	3.1e-35

TAIR|locus:2119682 AT4G21580 [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 141/191 (73%), Positives = 159/191 (83%)

Query:     1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             MKAIVI++PG PEVLQL++V DP++KDDEVLI+V ATALNRADTLQR G Y PP G+SPY
Sbjct:     1 MKAIVISEPGKPEVLQLRDVADPEVKDDEVLIRVLATALNRADTLQRLGLYNPPPGSSPY 60

Query:    61 PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
              GLECSGTI SVGK VSRWKVGDQVCALL GGGYAEKV+VPAGQ+ P+P+G+SLKDAAAF
Sbjct:    61 LGLECSGTIESVGKGVSRWKVGDQVCALLSGGGYAEKVSVPAGQIFPIPAGISLKDAAAF 120

Query:   121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
             PEVACTVWSTVFM   LS GESFL+HGGSSGIGTFAIQ+ K  GVRVFVTAG   +   C
Sbjct:   121 PEVACTVWSTVFMMGRLSVGESFLIHGGSSGIGTFAIQIAKHLGVRVFVTAGSDEKLAAC 180

Query:   181 QPFNIRVFIGF 191
             +     V I +
Sbjct:   181 KELGADVCINY 191

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

UNIPROTKB|P72043 Rv3777 "Oxidoreductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 99/191 (51%), Positives = 125/191 (65%)

Query:     1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             M+A+V     S + L  QEV D      EVLIKV A+ +NRAD LQ  G YPPP G S  
Sbjct:     4 MRAVVAE---SSDRLVWQEVPDVSAGPGEVLIKVAASGVNRADVLQAAGKYPPPPGVSDI 60

Query:    61 PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
              GLE SG + +VG  V+ W  G +VCALL GGGYAE VAVPA QVLP+P  V+L D+AA 
Sbjct:    61 IGLEVSGIVAAVGPGVTEWSAGQEVCALLAGGGYAEYVAVPADQVLPIPPSVNLVDSAAL 120

Query:   121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC 180
             PEVACTVWS + MT+HL PG+  L+HGG+SGIG+ AIQ+ +    RV +TAG   +  LC
Sbjct:   121 PEVACTVWSNLVMTAHLRPGQLVLIHGGASGIGSHAIQVVRALAARVAITAGSPEKLELC 180

Query:   181 QPFNIRVFIGF 191
             +    ++ I +
Sbjct:   181 RDLGAQITINY 191

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|SPO_0231 SPO_0231 "alcohol dehydrogenase, zinc-containing" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 96/172 (55%), Positives = 115/172 (66%)

Query:     1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             M+A+ I++PG PEVLQL +   P+    +VLIKV    +NR D LQR G+Y PP GAS  
Sbjct:     5 MRAVEISRPGGPEVLQLTQRPRPEPGHGQVLIKVAYAGVNRPDALQRAGAYDPPPGASDL 64

Query:    61 PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
             PGLECSG +++VG       VGD+VCALL GGGYA+ V  PA   LPVP G++L++AA  
Sbjct:    65 PGLECSGEVVAVGPGAEDVAVGDKVCALLPGGGYADYVVTPAAHCLPVPQGMALREAACL 124

Query:   121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
             PE   TVWS VF    L  GE FLVHGGSSGIGT AIQ+    G RVF TAG
Sbjct:   125 PETFFTVWSNVFTRGGLKAGERFLVHGGSSGIGTTAIQLAHAFGARVFATAG 176

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

TIGR_CMR|SO_0640 SO_0640 "alcohol dehydrogenase, zinc-containing" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 80/169 (47%), Positives = 106/169 (62%)

Query:     4 IVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGL 63
             I I QPG+PEV+QL     P +   +VLI+V A  +N  D  QR G+YPPP GAS   GL
Sbjct:    11 IHIEQPGAPEVMQLSRSSLPVVGAGQVLIRVSAAGVNGPDLKQRAGAYPPPPGASLILGL 70

Query:    64 ECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEV 123
             E +G I ++G+ V++W++GD+VCAL+ GGGY E     A   LP+P G S+  AAA PE 
Sbjct:    71 EVAGEICALGEGVTQWQLGDKVCALVPGGGYGEYTLTYAAHCLPIPKGFSMVQAAALPET 130

Query:   124 ACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
               TVW  +FM + L  GE+ L+HGGS GIG+ AI +    G +V  T G
Sbjct:   131 FFTVWGNLFMRAGLKAGETVLIHGGSGGIGSTAIALANRLGAKVIATTG 179

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|F1NUE4 TP53I3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 84/186 (45%), Positives = 111/186 (59%)

Query:     9 PGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGT 68
             PG PE L ++EV  P   + EVL+KV A+ALNRAD LQR+G YPPPKG+S   GLE +G+
Sbjct:    11 PGGPENLYVKEVMKPHPGEGEVLVKVSASALNRADLLQRRGKYPPPKGSSDILGLEAAGS 70

Query:    69 ILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTV 127
             +  +G   + RWK+GD V ALL GGG AE V VP G ++PVP  ++   AAA PE   T 
Sbjct:    71 VAGLGPGCTGRWKIGDAVMALLSGGGQAEYVTVPEGHLMPVPKDMTFIQAAAIPEAWLTA 130

Query:   128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV 187
             +  +     +  GE+ L+H G+SG+G  AIQ+ +       VTAG  T+  L    N   
Sbjct:   131 FQLLHFVGKIQKGETVLIHAGASGVGMAAIQLVRLANAIPIVTAG--TQEKLQATTNAGA 188

Query:   188 FIGFGY 193
               GF Y
Sbjct:   189 AAGFNY 194

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IEA

GO:0006739 "NADP metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

UNIPROTKB|F1SDJ3 TP53I3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 82/194 (42%), Positives = 114/194 (58%)

Query:     1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             M A+   +PG PE L L+EV  P   + EVL+KV A+ALNRAD LQR+G Y PP GA   
Sbjct:     1 MLAVHFDKPGGPENLHLKEVAKPSPGEGEVLLKVVASALNRADLLQRQGHYAPPPGACNI 60

Query:    61 PGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
              GLE SG ++ +G      WK+GD    LL GGG A+ V VP G ++P+P+G+++  AAA
Sbjct:    61 LGLEASGHVVELGPGCQGHWKIGDPAMVLLPGGGQAQYVTVPEGFLMPIPAGLTMLQAAA 120

Query:   120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
              PE   T +  + +  ++  G+S L+H GSSG+GT AIQ+ +  G    VTAG   +  +
Sbjct:   121 IPEAWLTAFQLLHLLGNVQAGDSVLIHAGSSGVGTAAIQLARMAGAIPLVTAGSQHKLQM 180

Query:   180 CQPFNIRVFIGFGY 193
              +        GF Y
Sbjct:   181 AEKLGAAA--GFNY 192

GO:0070402 "NADPH binding" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006739 "NADP metabolic process" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q0VC75 TP53I3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 82/194 (42%), Positives = 114/194 (58%)

Query:     1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             M A+   +PG PE L L+EV  P   + EVL+KV A+ALNRAD LQR+G Y PP GAS  
Sbjct:     1 MIAVHFDKPGGPENLYLKEVAKPSPGEGEVLLKVAASALNRADLLQRQGQYAPPPGASNI 60

Query:    61 PGLECSGTILSVGKNVSR-WKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
              GLE SG +  +G      W+VGD    LL GGG A+ V VPA  ++P+P+G+++  AAA
Sbjct:    61 LGLEASGHVAELGAGCQGPWRVGDPAMVLLSGGGQAQYVTVPAELLMPIPAGLTMCQAAA 120

Query:   120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
              PE   T +  + +  ++  G+S L+H G+SG+GT AIQ+ +  G    VTAG   +  +
Sbjct:   121 IPEAWLTAFQLLHLVGNVQAGDSVLIHAGASGVGTAAIQLARMAGATPLVTAGSQEKLQI 180

Query:   180 CQPFNIRVFIGFGY 193
              +        GF Y
Sbjct:   181 AEKLGAAA--GFNY 192

GO:0070402 "NADPH binding" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006739 "NADP metabolic process" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RR83 TP53I3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 83/194 (42%), Positives = 113/194 (58%)

Query:     1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             M A+   +PG PE L L+EV  P   + EVL+KV A+ALNRAD LQR+G Y PP GAS  
Sbjct:     1 MLAVHFDEPGGPENLYLKEVAKPSPVEGEVLLKVAASALNRADLLQRQGRYAPPPGASSI 60

Query:    61 PGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
              GLE SG I  +G      WK+GD    LL GGG A+ V VP   ++P+P+G++L  AAA
Sbjct:    61 LGLEASGHIAELGPACQGHWKIGDPAMVLLPGGGQAQYVTVPEELLMPIPAGLTLSQAAA 120

Query:   120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
              PE   T +  + +  ++  G+S L+H G+SG+GT AIQ+ +  G    VTAG   +  +
Sbjct:   121 IPEAWLTAFQLLHLLGNVQAGDSVLIHAGASGVGTAAIQLARMAGAIPLVTAGSQHKLQM 180

Query:   180 CQPFNIRVFIGFGY 193
              +        GF Y
Sbjct:   181 AEKLGAAA--GFNY 192

GO:0070402 "NADPH binding" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006739 "NADP metabolic process" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q53FA7 TP53I3 "Quinone oxidoreductase PIG3" [Homo sapiens (taxid:9606)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 81/194 (41%), Positives = 112/194 (57%)

Query:     1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             M A+   +PG PE L ++EV  P   + EVL+KV A+ALNRAD +QR+G Y PP GAS  
Sbjct:     1 MLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNI 60

Query:    61 PGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
              GLE SG +  +G      WK+GD   ALL GGG A+ V VP G ++P+P G++L  AAA
Sbjct:    61 LGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAA 120

Query:   120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
              PE   T +  + +  ++  G+  L+H G SG+GT AIQ+ +  G    VTAG   +  +
Sbjct:   121 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQM 180

Query:   180 CQPFNIRVFIGFGY 193
              +        GF Y
Sbjct:   181 AEKLGAAA--GFNY 192

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0003960 "NADPH:quinone reductase activity" evidence=IDA

GO:0048038 "quinone binding" evidence=IDA

GO:0006739 "NADP metabolic process" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

UNIPROTKB|H7BZH6 TP53I3 "Quinone oxidoreductase PIG3" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 79/187 (42%), Positives = 109/187 (58%)

Query:     8 QPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSG 67
             +PG PE L ++EV  P   + EVL+KV A+ALNRAD +QR+G Y PP GAS   GLE SG
Sbjct:     3 KPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASG 62

Query:    68 TILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT 126
              +  +G      WK+GD   ALL GGG A+ V VP G ++P+P G++L  AAA PE   T
Sbjct:    63 HVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLT 122

Query:   127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR 186
              +  + +  ++  G+  L+H G SG+GT AIQ+ +  G    VTAG   +  + +     
Sbjct:   123 AFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAA 182

Query:   187 VFIGFGY 193
                GF Y
Sbjct:   183 A--GFNY 187

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	1e-105
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	6e-96
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	8e-64
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	3e-63
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	7e-55
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	3e-52
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	8e-51
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	4e-47
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	6e-47
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	9e-47
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	4e-45
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	4e-45
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-44
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-42
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	5e-40
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	1e-39
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	2e-39
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-39
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	9e-38
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	4e-37
smart00829	287	smart00829, PKS_ER, Enoylreductase	1e-35
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	3e-35
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	5e-31
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	9e-30
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	7e-29
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-28
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	4e-27
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	1e-26
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	2e-26
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	6e-26
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	8e-26
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	1e-24
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-24
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	5e-24
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	9e-23
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	7e-22
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	1e-21
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	4e-21
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	6e-21
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	6e-21
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-19
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-19
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	5e-19
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	5e-19
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	9e-19
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	3e-18
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	5e-18
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	7e-18
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	2e-17
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	2e-17
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	6e-17
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	9e-16
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	1e-15
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	2e-15
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	3e-15
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	5e-15
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	7e-14
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	8e-14
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	9e-14
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	9e-14
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	1e-13
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-13
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	7e-13
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	3e-12
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-11
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-10
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	1e-10
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	3e-10
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	4e-10
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	6e-10
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	7e-10
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	2e-09
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	3e-09
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	9e-09
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-08
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-07
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	2e-07
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-06
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	2e-06
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	3e-06
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	3e-06
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	3e-06
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	5e-06
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	7e-06
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	1e-05
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	2e-05
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	2e-05
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	2e-05
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	3e-05
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	7e-05
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	8e-05
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	1e-04
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	1e-04
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	2e-04
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	4e-04
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	5e-04
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	5e-04
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	5e-04
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	6e-04
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	6e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	7e-04
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	8e-04
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	0.001
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	0.003
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	0.004

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score =  303 bits (780), Expect = e-105
 Identities = 103/172 (59%), Positives = 123/172 (71%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAIVI +PG PEVL+L EV  P     EVLI+V A  +NRAD LQR+G YPPP GAS  
Sbjct: 1   MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDI 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            GLE +G +++VG  V+ WKVGD+VCALL GGGYAE V VPAGQ+LPVP G+SL +AAA 
Sbjct: 61  LGLEVAGVVVAVGPGVTGWKVGDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAAL 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           PEV  T W  +F    L  GE+ L+HGG+SG+GT AIQ+ K  G RV  TAG
Sbjct: 121 PEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG 172

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score =  281 bits (721), Expect = 6e-96
 Identities = 109/172 (63%), Positives = 126/172 (73%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAI IT+PG PEVL L EV  P  K  EVLI+V A  +NR D LQR G YPPP GAS  
Sbjct: 1   MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDI 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            GLE +G +++VG+ VSRWKVGD+VCAL+ GGGYAE VAVPAGQVLPVP G+SL +AAA 
Sbjct: 61  LGLEVAGEVVAVGEGVSRWKVGDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAAL 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           PE   TVWS +F    L  GE+ L+HGG+SGIGT AIQ+ K  G RVF TAG
Sbjct: 121 PETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG 172

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  199 bits (508), Expect = 8e-64
 Identities = 75/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+V+ + G PEVL++ EV +P+    EVL++V+A  +N  D L R+G  PP +     
Sbjct: 1   MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFI 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGG---GGYAEKVAVPAGQVLPVPSGVSLKDA 117
           PG E +G +++VG  V+ +KVGD+V AL G    GGYAE V VPA  ++P+P G+S ++A
Sbjct: 61  PGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEA 120

Query: 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           AA P    T W  +F  + L PGE+ LVHG + G+G+ AIQ+ K  G  V     
Sbjct: 121 AALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS 175

Length = 326

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score =  198 bits (505), Expect = 3e-63
 Identities = 74/172 (43%), Positives = 104/172 (60%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+ +   G  +VL++ E   P  K ++VLIKV A  +NRADTLQR+G YPPP G+S  
Sbjct: 2   MRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEI 61

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            GLE +G +  VG +V R+K GD+V ALL GGGYAE      G V+ +P G + ++AAA 
Sbjct: 62  LGLEVAGYVEDVGSDVKRFKEGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAI 121

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           PE   T W  +     +  G+S L+H G+SG+GT A Q+ +  G    +T  
Sbjct: 122 PEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS 173

Length = 334

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  175 bits (447), Expect = 7e-55
 Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 5/177 (2%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+ I + G PEVL+L +V  P+    EVL+KV A  +N  D   R+G        +  
Sbjct: 1   MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLP 60

Query: 61  --PGLECSGTILSVGKNVSRWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLK 115
             PG + +G +++VG  V+ +KVGD+V  +     GG YAE V VPA ++   P+ +S +
Sbjct: 61  LIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFE 120

Query: 116 DAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           +AAA P    T W  +F    L  G++ L+HG + G+G+FA+Q+ K +G RV  TA 
Sbjct: 121 EAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS 177

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  169 bits (431), Expect = 3e-52
 Identities = 74/176 (42%), Positives = 102/176 (57%), Gaps = 8/176 (4%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSY---PPPKGA 57
           MKA+V  + G PE L L+EV        EV I+VEA  +N  D L  +G Y   PP    
Sbjct: 1   MKAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPL--- 57

Query: 58  SPY-PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKD 116
            P+ PG E +G + +VG+ V+ +KVGD+V AL G GG+AE+V VPA  V P+P G+S ++
Sbjct: 58  -PFVPGSEVAGVVEAVGEGVTGFKVGDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEE 116

Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           AAA P    T +  +   + L PGE+ LV G + G+G  A+Q+ K  G RV   A 
Sbjct: 117 AAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAAS 172

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score =  166 bits (422), Expect = 8e-51
 Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 4/172 (2%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY- 60
           KA+ I + G PEVL+ ++V  P+    EVL++  A  +N  DT  R G YP P    P+ 
Sbjct: 1   KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPL---PFV 57

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            G+E +G + +VG  V+ +KVGD+V      G YAE   VPA +++ +P G+S + AAA 
Sbjct: 58  LGVEGAGVVEAVGPGVTGFKVGDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAAL 117

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
                T    +  T  + PG++ LVH  + G+G    Q  K  G  V  T  
Sbjct: 118 LLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS 169

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  156 bits (397), Expect = 4e-47
 Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 6/178 (3%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP-PPKGASPY 60
           +A+V+T  G  + L++++   P+    EV ++VEA  LN AD + R+G Y   PK   P+
Sbjct: 1   RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKP--PF 58

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
            PG EC+GT+ +VG+ V  +KVGD+V  L   GGYAE V VPA QV P+P G+S ++AAA
Sbjct: 59  VPGFECAGTVEAVGEGVKDFKVGDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAA 118

Query: 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177
           FP    T +  +F   +L PG+S LVH  + G+G  A Q+  C+ V      G A+  
Sbjct: 119 FPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQL--CKTVPNVTVVGTASAS 174

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  156 bits (396), Expect = 6e-47
 Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 27/199 (13%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+VI   G PEVL+  ++ +P+   DEVL++V+A ALN  D   R+G           
Sbjct: 1   MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHI 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV---------------------CA---LLG---GGG 93
            G + +G + +VG  V+  K G +V                     CA   +LG    GG
Sbjct: 61  LGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGG 120

Query: 94  YAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIG 153
           YAE VAVPA  +LP+P  +S ++AAA P    T W  +   + L PGE+ LVHG  SG+G
Sbjct: 121 YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVG 180

Query: 154 TFAIQMGKCQGVRVFVTAG 172
           + AIQ+ K  G  V  TAG
Sbjct: 181 SAAIQIAKLFGATVIATAG 199

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  155 bits (395), Expect = 9e-47
 Identities = 69/178 (38%), Positives = 99/178 (55%), Gaps = 7/178 (3%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+AI   + G+P+VL+L ++  P     EVL++V A+ +N  DT  R G+YP      PY
Sbjct: 1   MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGL-PPLPY 59

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQVCALLGG-----GGYAEKVAVPAGQVLPVPSGVSL 114
            PG + +G + +VG+ V   KVGD+V     G     G  AE V VPA Q++P+P GVS 
Sbjct: 60  VPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSF 119

Query: 115 KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           +  AA    A T +  +F  +    GE+ LVHGGS  +G  A+Q+ +  G RV  TA 
Sbjct: 120 EQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATAS 177

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  151 bits (383), Expect = 4e-45
 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 11/180 (6%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+V+   G PEV +L+EV  PQ    +VL++V A+ +N  DT  R+G         P 
Sbjct: 1   MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAAR---PPL 57

Query: 61  P---GLECSGTILSVGKNVSRWKVGDQVCALLGG-----GGYAEKVAVPAGQVLPVPSGV 112
           P   G + +G + +VG+ V+R++VGD+V    GG     G  AE   V A  +   P+ +
Sbjct: 58  PAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANL 117

Query: 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           S+++AAA P V  T W  +   + +  G++ L+HGG+ G+G  A+Q+ K  G RV+ TA 
Sbjct: 118 SMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS 177

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score =  151 bits (383), Expect = 4e-45
 Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 9/176 (5%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAIVI QPG PEVL+L+E+  P+ K   VLI+V+A  LNR++   R+G  P  K     
Sbjct: 1   MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFP-RV 59

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGG------GGYAEKVAVPAGQVLPVPSGVSL 114
            G+E  G +         +  G +V   +GG      G YAE   VP  QV  + S +S 
Sbjct: 60  LGIEAVGEVEEAPG--GTFTPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSW 117

Query: 115 KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT 170
            + AA PE   T W ++F +  L PG++ L+ GG+S +G  A+++ K  G  V  T
Sbjct: 118 AELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTAT 173

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  150 bits (380), Expect = 1e-44
 Identities = 68/176 (38%), Positives = 95/176 (53%), Gaps = 7/176 (3%)

Query: 4   IVITQPGSPEVLQLQEVED--PQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASP 59
           +V T+ GSPEVL L EVE   P  K  EVL+KV A ++N  D   R+G       +   P
Sbjct: 1   VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 60  YPGLECSGTILSVGKNVSRWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKD 116
            PG++ +G +++VG  V+R+KVGD+V   L   GGG  AE V  P   +   P GVS ++
Sbjct: 61  IPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEE 120

Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           AAA P    T    +     + PG+  L++G S G+GTFA+Q+ K  G  V     
Sbjct: 121 AAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCS 176

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  144 bits (366), Expect = 2e-42
 Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 5/175 (2%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+   Q G PEVL+++E+  P     EVLI+VEA  LNRAD + R+G+Y  P      
Sbjct: 1   MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPAR 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVC----ALLG-GGGYAEKVAVPAGQVLPVPSGVSLK 115
            G E +G + +VG  V+ + VGD+V     A LG  G YAE   VPA  V+ +P G+S  
Sbjct: 61  LGYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFV 120

Query: 116 DAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT 170
           +AAA      T +  +   + L PG+S L+   SS +G  AIQ+    G  V  T
Sbjct: 121 EAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIAT 175

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score =  137 bits (347), Expect = 5e-40
 Identities = 54/145 (37%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 28  DEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCA 87
           DEV ++V+A  LN  D L   G  P         GLECSG +  VG  V+  KVGD+V  
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGD---ETPLGLECSGIVTRVGSGVTGLKVGDRVMG 57

Query: 88  LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG 147
           L   G +A  V V A  V+ +P  +S ++AA  P    T +  +   + L  GES L+H 
Sbjct: 58  L-APGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHA 116

Query: 148 GSSGIGTFAIQMGKCQGVRVFVTAG 172
            + G+G  AIQ+ +  G  VF T G
Sbjct: 117 AAGGVGQAAIQLAQHLGAEVFATVG 141

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  137 bits (347), Expect = 1e-39
 Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 6/175 (3%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ +PG+   L L+E+E P     EVL+KV A  LN  D        P      P+
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWS--YPH 58

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQVC---ALLGGGGYAEKVAVPAGQVLPVPSGVSLKD 116
            PG++ +G +++VG  V+ WKVGD+V    +L  GG +AE   V A  VLP+P  +S ++
Sbjct: 59  VPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEE 118

Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171
           AAA P    T +  +F    +  G + L+ GG+ G+G+FA+Q+ K  G+RV  T 
Sbjct: 119 AAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC 173

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score =  137 bits (347), Expect = 2e-39
 Identities = 65/193 (33%), Positives = 92/193 (47%), Gaps = 23/193 (11%)

Query: 1   MKAIVITQPGSPEVLQ-LQEVEDPQI-KDDEVLIKVEATALNRADTLQRKG--------- 49
           MKA  I   G  + L  L+    P I K ++VLIKV A ++N  D L R G         
Sbjct: 1   MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKK 60

Query: 50  SYPPPKGASPY-----PGLECSGTILSVGKNVSRWKVGDQVCALL---GGGGYAEKVAVP 101
             P     S        G +CSG ++ +G  V  +++GD+V   +     G +AE V VP
Sbjct: 61  RKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVP 120

Query: 102 AGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP----GESFLVHGGSSGIGTFAI 157
             +V   P  +S ++AA+ P    T WS +     L+P    G+  L+ GGS G+GTFAI
Sbjct: 121 ENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAI 180

Query: 158 QMGKCQGVRVFVT 170
           Q+ K  G  V  T
Sbjct: 181 QLLKAWGAHVTTT 193

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  136 bits (346), Expect = 2e-39
 Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 21/190 (11%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA V+T PG   ++ + +V  P+   DEVL+KV+A ALN  D   +   + P   A   
Sbjct: 1   QKAAVLTGPGGGLLV-VVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIPSYPA--I 57

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGG--------GGYAEKVAVPAGQVLPVPSGV 112
            G + +GT++ VG  V+R+KVGD+V   + G        G + E V   A     +P  +
Sbjct: 58  LGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNI 117

Query: 113 SLKDAAAFPEVACTVWSTVFMTSHL----------SPGESFLVHGGSSGIGTFAIQMGKC 162
           S ++AA  P    T    +F    L          S G+  L+ GGSS +GT AIQ+ K 
Sbjct: 118 SFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKL 177

Query: 163 QGVRVFVTAG 172
            G +V  TA 
Sbjct: 178 AGYKVITTAS 187

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  132 bits (334), Expect = 9e-38
 Identities = 55/171 (32%), Positives = 93/171 (54%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            + +V+T+ G PEVL++ E + P+    EV++KVEA+ ++ AD   R+G YP        
Sbjct: 1   NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFT 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG +  G + ++G  V+ ++VGD+V AL   GG AE + + A  ++PVP GV   +A   
Sbjct: 61  PGYDLVGRVDALGSGVTGFEVGDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCL 120

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171
                T +  +   + +  G+  L+HG S G+G   +++    G  V+ TA
Sbjct: 121 VLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTA 171

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  129 bits (326), Expect = 4e-37
 Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 24/172 (13%)

Query: 29  EVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCAL 88
           EVL++VEA  L   D   R+G YPPP       G E +G ++ VG  V+  KVGD+V  L
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 89  LGG-----------------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC 125
                                     GG+AE V VPA  ++P+P G+SL++AA  PE   
Sbjct: 61  PNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLA 120

Query: 126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177
           T +  +     L PG++ LV G   G+G  A Q+ K  G RV VT     + 
Sbjct: 121 TAYHALRRAGVLKPGDTVLVLGA-GGVGLLAAQLAKAAGARVIVTDRSDEKL 171

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score =  125 bits (318), Expect = 1e-35
 Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 32  IKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGG 91
           I+V A  LN  D L   G YP         G EC+G +  VG  V+   VGD+V  L   
Sbjct: 1   IEVRAAGLNFRDVLIALGLYPGEAV----LGGECAGVVTRVGPGVTGLAVGDRVMGL-AP 55

Query: 92  GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG 151
           G +A +V   A  V+P+P G S ++AA  P V  T +  +   + L PGES L+H  + G
Sbjct: 56  GAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGG 115

Query: 152 IGTFAIQMGKCQGVRVFVTAG 172
           +G  AIQ+ +  G  VF TAG
Sbjct: 116 VGQAAIQLARHLGAEVFATAG 136

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  125 bits (317), Expect = 3e-35
 Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 22/191 (11%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA  ++  G  + L+L E   P+    EVL++V A +LN  D L   G YPPP      
Sbjct: 1   MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLI 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCAL------------------LGG---GGYAEKVA 99
           P  + +G +++VG+ V+R+KVGD+V                     LGG   G  AE V 
Sbjct: 61  PLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVV 120

Query: 100 VPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM 159
           +P   ++  P  +S ++AA  P    T W+ +F    L PG++ LV  G+ G+  FA+Q 
Sbjct: 121 LPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQ-GTGGVSLFALQF 179

Query: 160 GKCQGVRVFVT 170
            K  G RV  T
Sbjct: 180 AKAAGARVIAT 190

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  114 bits (288), Expect = 5e-31
 Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 35/198 (17%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ + G P  L+++EV  P+    EVLIKVEA  +   D    KG +P PK   P 
Sbjct: 4   MKAAVLKKFGQP--LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKL--PL 59

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQV--------------C----------ALLGG---- 91
            PG E  GT++ VG+ V+  KVGD+V              C            + G    
Sbjct: 60  IPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTD 119

Query: 92  GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG 151
           GGYAE V VPA  V+ +P G+ L +AA       T +  +   +++ PG+   V  G+ G
Sbjct: 120 GGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKK-ANVKPGKWVAVV-GAGG 177

Query: 152 IGTFAIQMGKCQGVRVFV 169
           +G  A+Q  K  G  V  
Sbjct: 178 LGHMAVQYAKAMGAEVIA 195

Length = 339

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score =  110 bits (278), Expect = 9e-30
 Identities = 58/157 (36%), Positives = 82/157 (52%), Gaps = 9/157 (5%)

Query: 21  EDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP---GLECSGTILSVGKNVS 77
           E       EV I+V A +LN  D L  +G YP      PYP   G E SG + +VG +V+
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYP---TMPPYPFTPGFEASGVVRAVGPHVT 57

Query: 78  RWKVGDQVCALLGG--GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS 135
           R  VGD+V A  G   GG+A  V VP  QV+  P+ +S ++A A P V  TV    F  +
Sbjct: 58  RLAVGDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDA-FARA 116

Query: 136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
            L+ GE  L+   + G G  A+Q+ + +G  ++ TA 
Sbjct: 117 GLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATAS 153

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  108 bits (273), Expect = 7e-29
 Identities = 67/197 (34%), Positives = 92/197 (46%), Gaps = 33/197 (16%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA ++ +P  P  LQ++EV DP+    EVLIKV+A  +   D L  KG +  P+G  P 
Sbjct: 1   MKAAILHKPNKP--LQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFF--PRGKYPL 56

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQV----------C--------------ALLGG---G 92
             G E  GT+  VG+ V R+K GD+V          C              A  G    G
Sbjct: 57  ILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDG 116

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           G+AE V VP   ++ +P  VS + AA    V  T    +     +  G++ LV G   G+
Sbjct: 117 GFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKRAG-VKKGDTVLVTGAGGGV 175

Query: 153 GTFAIQMGKCQGVRVFV 169
           G  AIQ+ K  G RV  
Sbjct: 176 GIHAIQLAKALGARVIA 192

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score =  107 bits (270), Expect = 2e-28
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 6/168 (3%)

Query: 4   IVITQPGSPE--VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASP 59
           +V TQ G P   VL+L  +  P     EVL+++ A  +N +D +   G+Y   PP  A P
Sbjct: 1   VVYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVP 60

Query: 60  YPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
             G E  G ++ VG  VS   VG +V  L G G + E V  PA  ++PVP  +S + AA 
Sbjct: 61  --GNEGVGVVVEVGSGVSGLLVGQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAM 118

Query: 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRV 167
                 T W  +     L PG+  + +  +S +G   IQ+ K  G + 
Sbjct: 119 LYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKT 166

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score =  104 bits (262), Expect = 4e-27
 Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 13/178 (7%)

Query: 1   MKAIVITQPGSP-EVLQLQEVEDPQIKD-DEVLIKVEATALNRADTLQRKGSYP--PPKG 56
            KA+V T+ G P EVLQL+  E P     +EVL+K+ A  +N AD  Q +G YP  PP  
Sbjct: 1   AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 57  ASP--YPGLECSGTILSVGKNVSRWKVGDQVCALLGGGG-YAEKVAVPAGQVLPVPSGVS 113
             P    G E  G ++ VG  V   K GD V  L  G G +     VPA  ++ VP+ V 
Sbjct: 61  PEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVD 120

Query: 114 LKDAAAFPEVACTVWSTVFMTSH---LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVF 168
            + AA      CT +    +      L PG+  + +G +S +G   IQ+ K  G++  
Sbjct: 121 PEQAATLSVNPCTAY---RLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTI 175

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score =  102 bits (258), Expect = 1e-26
 Identities = 63/185 (34%), Positives = 91/185 (49%), Gaps = 15/185 (8%)

Query: 1   MKAIVITQPG---SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           MKAI  TQP     P+ L   E+  P     ++L++VEA ++N  DT  R G  P P   
Sbjct: 1   MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPG-- 58

Query: 58  SPY-PGLECSGTILSVGKNVSRWKVGDQVC---ALLGGGGYAEKVAVPAGQVLPVPSGVS 113
            P   G + SG + +VG  V+ +KVGD+V     +   G  AE   V    V   P  +S
Sbjct: 59  QPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLS 118

Query: 114 LKDAAAFPEVACTVWSTVFMTSHLSP-----GESFLVHGGSSGIGTFAIQMGKC-QGVRV 167
             +AAA P  + T W  +F    +S      G++ L+ GG+ G+G+ AIQ+ K   G+ V
Sbjct: 119 FAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTV 178

Query: 168 FVTAG 172
             TA 
Sbjct: 179 IATAS 183

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score =  102 bits (255), Expect = 2e-26
 Identities = 71/201 (35%), Positives = 93/201 (46%), Gaps = 38/201 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+V T PG   V +L+EV +P+    EVLIKV A  +  +D    KG Y P +     
Sbjct: 1   MKALVKTGPGPGNV-ELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVE----T 55

Query: 61  P---GLECSGTILSVGKNVSRWKVGDQV----------------------CA---LLG-- 90
           P   G E SGTI+ VG +V  WKVGD+V                      C     +G  
Sbjct: 56  PVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQ 115

Query: 91  -GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGS 149
             GG+AE V VP   +  +P  +SL +AAA  E        V   S + PG++ +V  G 
Sbjct: 116 ADGGFAEYVLVPEESLHELPENLSL-EAAALTEPLAVAVHAVAERSGIRPGDTVVVF-GP 173

Query: 150 SGIGTFAIQMGKCQGVRVFVT 170
             IG  A Q+ K QG  V V 
Sbjct: 174 GPIGLLAAQVAKLQGATVVVV 194

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score =  101 bits (253), Expect = 6e-26
 Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 35/201 (17%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRAD--TLQRKGSYPPPKGAS 58
           MKA+V  + G  E L++++V+DP+    EVLI+V+   +N  D   +      P P    
Sbjct: 1   MKALVFEKSGI-ENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPMPH--- 56

Query: 59  PYPGLECSGTILSVGKNVSRWKVGDQV----------CALL----------GG------- 91
             PG E +G +  VG +V   K GD+V          C +           GG       
Sbjct: 57  -IPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSN 115

Query: 92  GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG 151
           GGYAE + VP   +  +P  +S + AA+ P  A T +  +     L PGE+ +V G S  
Sbjct: 116 GGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAG-LGPGETVVVFGASGN 174

Query: 152 IGTFAIQMGKCQGVRVFVTAG 172
            G FA+Q+ K  G  V   + 
Sbjct: 175 TGIFAVQLAKMMGAEVIAVSR 195

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  100 bits (252), Expect = 8e-26
 Identities = 63/197 (31%), Positives = 88/197 (44%), Gaps = 37/197 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+++         +++EV DP+   DEV+IKV    L   D LQ +G YP  K    Y
Sbjct: 1   MKAVILPGFKQG--YRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMK----Y 54

Query: 61  P---GLECSGTILSVGKNVSRWKVGDQVCALL-----------GG--------------- 91
           P   G E  GT+  VG+NV  +K GD+V +LL            G               
Sbjct: 55  PVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEEL 114

Query: 92  -GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSS 150
            G +AE   V    ++ VP  VS + A   P V   V+  +     +  GE+ LV G   
Sbjct: 115 DGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRAG-VKKGETVLVTGAGG 173

Query: 151 GIGTFAIQMGKCQGVRV 167
           G+G  AIQ+ K  G +V
Sbjct: 174 GVGIHAIQVAKALGAKV 190

Length = 334

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 62/176 (35%), Positives = 84/176 (47%), Gaps = 7/176 (3%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+V+  P +P  L+L EV DPQ    E L++V A +LNR +    K +   P GA P 
Sbjct: 1   MRALVVD-PDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGEL---KFAAERPDGAVP- 55

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            G + +G +     + S   VG +V  L   G +AE VAVP G +  +P GVS   AA  
Sbjct: 56  -GWDAAGVVERAAADGSGPAVGARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATL 114

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176
           P    T    +     L  G   LV G S G+G FA+Q+    G  V    G   R
Sbjct: 115 PVAGVTALRALRRGGPLL-GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPAR 169

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 97.7 bits (244), Expect = 1e-24
 Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 42/201 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQR---KGSYPPPKGA 57
           MKA+V+T PG    L+ +++  P+    EVL+KV+A  +  +D + R    G+Y PP   
Sbjct: 1   MKALVLTGPG---DLRYEDIPKPEPGPGEVLVKVKACGICGSD-IPRYLGTGAYHPPL-- 54

Query: 58  SPYPGLECSGTILSVGKNVSRWKVGDQV---------------------CA---LLGG-- 91
               G E SGT+  VG  V    VGD+V                     C+    +G   
Sbjct: 55  --VLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRR 112

Query: 92  -GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSS 150
            G +AE V+VPA  ++ +P  V   + AA  E A      V +   ++ G++ +V G  +
Sbjct: 113 DGAFAEYVSVPARNLIKIPDHVDY-EEAAMIEPAAVALHAVRLA-GITLGDTVVVIGAGT 170

Query: 151 GIGTFAIQMGKCQGV-RVFVT 170
            IG  AIQ  K  G  RV   
Sbjct: 171 -IGLLAIQWLKILGAKRVIAV 190

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 96.0 bits (239), Expect = 5e-24
 Identities = 61/174 (35%), Positives = 83/174 (47%), Gaps = 2/174 (1%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           K I   + G PEVLQ  E       ++EV ++ +A  +N  DT  R G YPPP   S   
Sbjct: 3   KRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGL- 61

Query: 62  GLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           G E +G +  VG  V   KVGD+V  A    G Y+    VPA +   +P  +S + AAA 
Sbjct: 62  GTEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAAS 121

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174
                TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T G A
Sbjct: 122 FLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSA 175

Length = 327

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 92.4 bits (230), Expect = 9e-23
 Identities = 61/176 (34%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP-PPKGASP 59
           M+AI + + G PEVL  ++V DP     +V I V A  ++  DT  R G  P P     P
Sbjct: 1   MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELP 60

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQVCALLG--GGGYAEKVAVPAGQVLPVPSGVSLKD 116
           Y PG E +G + +VG  V    +G +V A  G  GGGYAE        + PVP G+ L+ 
Sbjct: 61  YVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEA 120

Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           A A      T    +   + L+PG+  LV   + G+G+  +Q+ K  G  V   AG
Sbjct: 121 AVAVVHDGRTA-LGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG 175

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 90.3 bits (225), Expect = 7e-22
 Identities = 67/201 (33%), Positives = 93/201 (46%), Gaps = 40/201 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP- 59
           MKA+V   PG    L+++EV  P+   DEVLIKV A  +   D    +G +    GA+P 
Sbjct: 1   MKALVYEGPGE---LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEF----GAAPP 53

Query: 60  -YPGLECSGTILSVGKNVSRWKVGDQV---------------------CALLGG------ 91
             PG E +G +++VG  V+ +KVGD+V                     C  L        
Sbjct: 54  LVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRN 113

Query: 92  GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG 151
           GG+AE V VPA QV  +P  +S ++AA    ++C V     +     PG+S LV G    
Sbjct: 114 GGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLDLLGIK--PGDSVLVFGAGP- 170

Query: 152 IGTFAIQMGKCQGV-RVFVTA 171
           IG    Q+ K  G  RV V  
Sbjct: 171 IGLLLAQLLKLNGASRVTVAE 191

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 89.9 bits (224), Expect = 1e-21
 Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 36/198 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ + G  +  ++++V  P+    EVL+K+EA+ +   D     G +P        
Sbjct: 1   MKAAVVEEFG-EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLI 59

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV--------C----------------ALLGG----G 92
            G E +G +++VG  VS  KVGD+V        C                    G    G
Sbjct: 60  GGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDG 119

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSPGESFLVHGGS 149
            +AE     A  V P+P G+S + AA    + C   TV+  +   + L PG+  ++ G  
Sbjct: 120 TFAEYAIADARYVTPIPDGLSFEQAAP---LLCAGVTVYKAL-KKAGLKPGDWVVISGAG 175

Query: 150 SGIGTFAIQMGKCQGVRV 167
            G+G   +Q  K  G+RV
Sbjct: 176 GGLGHLGVQYAKAMGLRV 193

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 88.0 bits (219), Expect = 4e-21
 Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 1   MKAIVITQPGSPEV---LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           MKA+++ + G P     L L E E P+    EVLIKVEA  +N +D    KG Y   K  
Sbjct: 1   MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKAL 60

Query: 58  SPYPGLECSGTILSVGKNVSRW-KVGDQV-CALLGGGGYAEKVAVPAGQVLPVPSGVSLK 115
              PG E SGT+++ G        +G +V       G YAE     A Q LP+P GVS +
Sbjct: 61  PVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFE 120

Query: 116 DAAA 119
             A+
Sbjct: 121 QGAS 124

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 88.1 bits (219), Expect = 6e-21
 Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 50/218 (22%)

Query: 1   MKAIVITQPGSPEVLQLQEVED---PQIKDDEVLIKVEATALNRADTLQRKGSY-----P 52
           M+A+++T  G  +  +L   +D   P     EVLI+V A  +N  D   R+G Y      
Sbjct: 1   MRAVLLTGHGGLD--KLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDG 58

Query: 53  PPKGASPY--------------PGLECSGTILSVGKNVSRWKVGDQV------------- 85
                                  G +  G +++VG+ V   ++G++V             
Sbjct: 59  ATDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDD 118

Query: 86  ---CALLGG---GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST---VFMTSH 136
                 +G    GG+AE   VPA    PV S +S  + A FP      +ST   +   + 
Sbjct: 119 PADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFP----CSYSTAENMLERAG 174

Query: 137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA 174
           +  GE+ LV G S G+G+  +Q+ K +G  V   AG A
Sbjct: 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA 212

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 88.1 bits (219), Expect = 6e-21
 Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 18/175 (10%)

Query: 2   KAIVITQPGSPEVLQLQEVE---DPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGAS 58
           KA+      SP  L +  ++       KD+E+++KV A ALN  D L+   SY       
Sbjct: 2   KALTFKNNTSP--LTITTIKLPLPNCYKDNEIVVKVHAAALNPVD-LKLYNSYTFHFKVK 58

Query: 59  PYP-GLECSGTILSVGKNV-SRWKVGDQVCAL-----LGGGGYAEKVAV-PAGQ---VLP 107
               G + SG I+ VG NV S WKVGD+VC +      G G  ++ + V P      +  
Sbjct: 59  EKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITR 118

Query: 108 VPSGVSLKDAAAFPEVACTVWSTVF-MTSHLSPGESFLVHGGSSGIGTFAIQMGK 161
            P  +SL++AAA+P V  T +  +  +   L P    LV GGS+ +G FAIQ+ K
Sbjct: 119 KPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAK 173

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 41/200 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A V  + G P  L+++EV DP+   D V+++VEA  + R+D    +G    P    P+
Sbjct: 1   MRAAVYEEFGEP--LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGH--DPDVTLPH 56

Query: 61  -PGLECSGTILSVGKNVSRWKVGD---------------------QVCA------LLGGG 92
            PG E +G ++ VG++VSRW+VGD                      VC           G
Sbjct: 57  VPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPG 116

Query: 93  GYAEKVAVPAGQV--LPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSPGESFLVHG 147
            +AE VAVP   V  + +P  V    AA    + C   T +  +   + + PGE   VHG
Sbjct: 117 SFAEYVAVPRADVNLVRLPDDVDFVTAAG---LGCRFATAFRALVHQARVKPGEWVAVHG 173

Query: 148 GSSGIGTFAIQMGKCQGVRV 167
              G+G  A+ +    G RV
Sbjct: 174 C-GGVGLSAVMIASALGARV 192

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 46/206 (22%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+  P     ++L+EV  P+    EVL+KV A  +   D  + +G +   K     
Sbjct: 1   MKAAVLHGPN---DVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLK-PPRI 56

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCA------------LLG---------------GGG 93
            G E +G I+ VG  V+ +KVGD+V              L G                GG
Sbjct: 57  LGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGG 116

Query: 94  YAEKVAVPA-----GQVLPVPSGVSLKDAAAFPEVACTV--WSTVFMTSHLSPGESFLVH 146
           +AE V VPA     G VL +P  VS ++AA    +AC +         + + PG++ LV 
Sbjct: 117 FAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCINAQR----KAGIKPGDTVLVI 172

Query: 147 GGSSG-IGTFAIQMGKCQG-VRVFVT 170
           G  +G IG     + K  G  +V V+
Sbjct: 173 G--AGPIGLLHAMLAKASGARKVIVS 196

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 82.8 bits (205), Expect = 5e-19
 Identities = 59/197 (29%), Positives = 81/197 (41%), Gaps = 35/197 (17%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY- 60
           KA V+   G P  L+ +EV  P+    EVLIK+EA  +   D    +G +   K   P  
Sbjct: 1   KAAVVHAAGGP--LEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSK--YPLV 56

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV--------C----------------ALLGG----G 92
           PG E  G ++ VG  V   KVGD+V        C                A+  G    G
Sbjct: 57  PGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQG 116

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           GYAE +   A   + +P G+ L  AA       TV+S +   +   PGE   V  G  G+
Sbjct: 117 GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVL-GIGGL 174

Query: 153 GTFAIQMGKCQGVRVFV 169
           G  A+Q  +  G     
Sbjct: 175 GHLAVQYARAMGFETVA 191

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 82.6 bits (205), Expect = 5e-19
 Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 49/215 (22%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+V  +PG    L++ ++ +P     EVL++V+   +  +D       Y    G +P+
Sbjct: 1   MKALVCEKPG---RLEVVDIPEPVPGAGEVLVRVKRVGICGSDL----HIY---HGRNPF 50

Query: 61  ------PGLECSGTILSVGKNVSRWKVGDQVC------------------------ALLG 90
                  G E SG ++ VG+ V+  KVGD+V                          +LG
Sbjct: 51  ASYPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLG 110

Query: 91  ---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC-TVWSTVFMTSHLSPGESFLVH 146
               GG+AE + VPA   L VP G+SL  AA    V    + +     + ++ G++ LV 
Sbjct: 111 VHRDGGFAEYIVVPA-DALLVPEGLSLDQAAL---VEPLAIGAHAVRRAGVTAGDTVLVV 166

Query: 147 GGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181
           G +  IG   IQ+ K +G RV V      R    +
Sbjct: 167 G-AGPIGLGVIQVAKARGARVIVVDIDDERLEFAR 200

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 81.9 bits (203), Expect = 9e-19
 Identities = 64/196 (32%), Positives = 88/196 (44%), Gaps = 29/196 (14%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA      GS  +L L+EV  P+    EVL+KV+A  +  +D     G  P        
Sbjct: 1   MKAWRFH-KGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLT 59

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV----------CAL-LGG----------------GG 93
            G E +GT++ VG  V+ +KVGD+V          CAL   G                GG
Sbjct: 60  LGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGG 119

Query: 94  YAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIG 153
           +AE + VPA  ++PVP GV    AA   +   T +  V     + PGE+ LV  G  G+G
Sbjct: 120 FAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLV-IGLGGLG 178

Query: 154 TFAIQMGKCQGVRVFV 169
             A+Q+ K  G  V  
Sbjct: 179 LNAVQIAKAMGAAVIA 194

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 80.3 bits (199), Expect = 3e-18
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 41/195 (21%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA  + + G P  L+L++V  P+    +VL++V    +  +D     G      G  PY
Sbjct: 1   MKAARLYEYGKP--LRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDG---VWGGILPY 55

Query: 61  -----PGLECSGTILSVGKNVSRWKVGDQV-------------CAL-----------LG- 90
                 G E +G +  VG  V   K GD V             C              G 
Sbjct: 56  KLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGI 115

Query: 91  --GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV-FMTSHLSPGESFLVHG 147
              GG+AE + VP+ +++ +P G+   +AA   +   T +  V     +L PG + +V G
Sbjct: 116 GTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIG 175

Query: 148 -GSSGIGTFAIQMGK 161
            G  G+G  A+Q+ +
Sbjct: 176 VG--GLGHIAVQILR 188

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 79.6 bits (197), Expect = 5e-18
 Identities = 61/198 (30%), Positives = 84/198 (42%), Gaps = 39/198 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA+ +T+PG P  L  ++V  P     EVLIKVEA  +  +D   ++G+ P       Y
Sbjct: 1   YKAVQVTEPGGPLELVERDVPLPGP--GEVLIKVEACGVCHSDAFVKEGAMPGLS----Y 54

Query: 61  P---GLECSGTILSVGKNVSRWKVGDQV-CALLGG------------------------- 91
           P   G E  G I +VG+ VSRWKVGD+V     GG                         
Sbjct: 55  PRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVT 114

Query: 92  --GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGS 149
             GGYAE +  PA  +  +P  +   +AA       T ++     S   PG+   V  G 
Sbjct: 115 RDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNA-LRNSGAKPGDLVAVQ-GI 172

Query: 150 SGIGTFAIQMGKCQGVRV 167
            G+G  A+Q     G R 
Sbjct: 173 GGLGHLAVQYAAKMGFRT 190

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 79.3 bits (196), Expect = 7e-18
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 1   MKAIVITQPGSPE-VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSY--PPPKGA 57
           M+A V TQ G P  VL++ EV  P     EVL++   + ++  D    +G+Y   P   A
Sbjct: 1   MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPA 60

Query: 58  SPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDA 117
               G E  G + +VG+ V   +VG +V      G +AE    PA  ++P+P G+S + A
Sbjct: 61  IG--GSEAVGVVDAVGEGVKGLQVGQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVA 118

Query: 118 A---AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRV 167
           A   A P  A  +   +     + PG+  + +     +G     +   +G+ V
Sbjct: 119 AQLIAMPLSALMLLDFL----GVKPGQWLIQNAAGGAVGKLVAMLAAARGINV 167

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 78.0 bits (193), Expect = 2e-17
 Identities = 64/201 (31%), Positives = 88/201 (43%), Gaps = 37/201 (18%)

Query: 1   MKAIVITQPGSPEV--LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGAS 58
           MKA+V+ +PG  E   L+L EV  P+    EVLIKVEA  + R D    +G  PPPK   
Sbjct: 1   MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPL 60

Query: 59  PYPGLECSGTILSVGKNVSRWKVGDQV-----------CAL-LGG--------------- 91
             PG E  G + +VG  V+R+ VGD+V           C     G               
Sbjct: 61  -IPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTV 119

Query: 92  -GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEV-ACTVWSTVFMTSHLSPGESFLVHG-G 148
            GGYAE +        P+P      D  A P + A  +       + L PG+   ++G G
Sbjct: 120 DGGYAEYMVADERFAYPIPED--YDDEEAAPLLCAGIIGYRALKLAGLKPGQRLGLYGFG 177

Query: 149 SSGIGTFAIQMGKCQGVRVFV 169
           +S     A+Q+ + QG  VF 
Sbjct: 178 AS--AHLALQIARYQGAEVFA 196

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 78.0 bits (193), Expect = 2e-17
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 23/174 (13%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA+V+ +      L L+ +    + + +VLI+V  ++LN  D L   G+    +    Y
Sbjct: 1   FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTR---NY 57

Query: 61  P---GLECSGTILSVGKNVSRWKVGDQVCALLGG------GGYAEKVAVPAGQVLPVPSG 111
           P   G++ +GT++S      R++ GD+V            GG+AE V VPA  V+P+P G
Sbjct: 58  PHTPGIDAAGTVVSSD--DPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEG 115

Query: 112 VSLKDAAAFPEVACTVWSTVF------MTSHLSPGESFLVHGGSSGIGTFAIQM 159
           +SL++A        T   +V        T    P    LV G + G+G+ A+ +
Sbjct: 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGP---VLVTGATGGVGSIAVAI 166

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 77.1 bits (190), Expect = 6e-17
 Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 58/216 (26%)

Query: 1   MKAIVI--TQPGSPE-VLQLQEVEDPQIKDDEVLIKVEATALN-------------RADT 44
           M A  I   + G P   +QL++V  P++   EVL+ V A  +N                 
Sbjct: 13  MYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAA 72

Query: 45  LQRKGSYPPPKGASPY--PGLECSGTILSVGKNVSRWKVGDQVCAL-----------LGG 91
            QR+G         PY   G + SG + +VG+ V  WKVGD+V               GG
Sbjct: 73  RQRRGR------DEPYHIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGG 126

Query: 92  -----------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMT 134
                            G +A+   V A Q++P P  +S ++AAA+  V  T +  +F  
Sbjct: 127 DPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLF-- 184

Query: 135 SH----LSPGESFLVHGGSSGIGTFAIQMGKCQGVR 166
                 + PG++ L+ G S G+G+ AIQ+ +  G  
Sbjct: 185 GWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGAN 220

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 73.6 bits (181), Expect = 9e-16
 Identities = 55/207 (26%), Positives = 80/207 (38%), Gaps = 40/207 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+   G    ++L+E   P     +VLI+V AT +  +D    +G  P        
Sbjct: 1   MKAAVVYVGG--GDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDII 58

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLG------------------------------ 90
            G E  G ++ VG  V  +KVGD+V                                   
Sbjct: 59  LGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGG 117

Query: 91  --GGGYAEKVAVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG 147
              GG+AE V VPA   +  +P G+   +AAA  E   T +      + + PG + +V G
Sbjct: 118 GIDGGFAEYVRVPADFNLAKLPDGIDE-EAAALTEPLATAYHGHAERAAVRPGGTVVVVG 176

Query: 148 -GSSGIGTFAIQMGKCQGVRVFVTAGL 173
            G   IG  AI + K  G  V +    
Sbjct: 177 AGP--IGLLAIALAKLLGASVVIVVDR 201

Length = 350

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 2   KAIVITQP---GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGAS 58
           KA+   +P     P+ L   ++  P+    ++L++V+A ++N  DT  R    P   G  
Sbjct: 1   KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEA-GQP 59

Query: 59  PYPGLECSGTILSVGKNVSRWKVGDQVC---ALLGGGGYAEKVAVPAGQVLPVPSGVSLK 115
              G + +G +++VG  V+ +K GD+V     +   G  AE   V    V   P  +S  
Sbjct: 60  KILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFA 119

Query: 116 DAAAFPEVACTVWSTVFMTSHLSPGES-----FLVHGGSSGIGTFAIQMGK-CQGVRVFV 169
           +AAA P  + T W  +F    ++   +      L+ GG+ G+G+  IQ+ +   G+ V  
Sbjct: 120 EAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIA 179

Query: 170 TA 171
           TA
Sbjct: 180 TA 181

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 23/173 (13%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKG------SYPPPK 55
           KA+V+ +       Q++ ++   + + +VLIKV  ++LN  D L   G      SYP   
Sbjct: 1   KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPM-- 58

Query: 56  GASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGG------GGYAEKVAVPAGQVLPVP 109
                PG++ +GT++S      R++ GD+V     G      GGY++   VPA  ++P+P
Sbjct: 59  ----IPGIDAAGTVVS--SEDPRFREGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLP 112

Query: 110 SGVSLKDAAAFPEVACTVWSTVF--MTSHLSPGE-SFLVHGGSSGIGTFAIQM 159
            G+SL++A A      T   +V     + L+P +   LV G + G+G+ A+ +
Sbjct: 113 EGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAI 165

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 51/210 (24%)

Query: 1   MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRA-------------DTLQ 46
             AI   + G P + +QL+ V  P++   EVL+ V A  +N                 L+
Sbjct: 10  AFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLR 69

Query: 47  RKGSYPPPKGASPY--PGLECSGTILSVGKNVSRWKVGDQVCA----------------- 87
           + G     K   P+   G + SG +  VG  V+RWKVGD+V A                 
Sbjct: 70  KYG-----KLDLPFHIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDP 124

Query: 88  LLGG-----------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF--MT 134
           +L             G +AE   V   Q++P P  ++ ++AA       T +  +     
Sbjct: 125 MLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNP 184

Query: 135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQG 164
           + + PG++ L+ G + G+G++A Q+ +  G
Sbjct: 185 AAVKPGDNVLIWGAAGGLGSYATQLARAGG 214

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 71.4 bits (176), Expect = 5e-15
 Identities = 53/209 (25%), Positives = 78/209 (37%), Gaps = 60/209 (28%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A V+ + G P  ++  E++DP     EVL+++ A  L  +D     G  P P  A   
Sbjct: 1   MRAAVLHEVGKPLEIEEVELDDP--GPGEVLVRIAAAGLCHSDLHVVTGDLPAPLPA--V 56

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVC---------------------------------- 86
            G E +G +  VG  V+  K GD V                                   
Sbjct: 57  LGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPD 116

Query: 87  -------------ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTV---WST 130
                        A+ G G +AE   VP   V+ +   + L  AA    + C V      
Sbjct: 117 GTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAAL---LGCGVTTGVGA 173

Query: 131 VFMTSHLSPGESFLVHG-GSSGIGTFAIQ 158
           V  T+ + PG++  V G G  G+G  AIQ
Sbjct: 174 VVNTARVRPGDTVAVIGCG--GVGLNAIQ 200

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 68.2 bits (167), Expect = 7e-14
 Identities = 59/221 (26%), Positives = 86/221 (38%), Gaps = 57/221 (25%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+  P  P  L ++E+  P+ K+ E+LI+V A  +  +D    KG  P P      
Sbjct: 1   MKAAVLKGPNPP--LTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPFPPPF--V 56

Query: 61  PGLECSGTILSVGKNV---SRWKVGDQV-------------CA----------------- 87
            G E SG ++ VG NV       VGD+V             CA                 
Sbjct: 57  LGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLK 116

Query: 88  --LLGG-----------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVW 128
             L  G                 GG AE   VPA  + P+P  +   ++A       T +
Sbjct: 117 GTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAY 176

Query: 129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFV 169
             +   + + PGE+  V  G  G+G+ AIQ+ K  G    +
Sbjct: 177 GALKHAADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPII 216

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 68.0 bits (167), Expect = 8e-14
 Identities = 59/217 (27%), Positives = 82/217 (37%), Gaps = 61/217 (28%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS---------- 50
           MKA           ++++EV +P +K  EV IKV    +         GS          
Sbjct: 1   MKAARYHGRKD---IRVEEVPEPPVKPGEVKIKVAWCGIC--------GSDLHEYLDGPI 49

Query: 51  YPPPKGASPYPGL--------ECSGTILSVGKNVSRWKVGDQVC---------------- 86
           + P +G     G         E SG ++ VG  V+ +KVGD+V                 
Sbjct: 50  FIPTEGHPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRG 109

Query: 87  --------ALLG----GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMT 134
                     +G    GGG+AE V VPA  V  +P  V L + AA  E     W  V   
Sbjct: 110 LYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPL-EEAALVEPLAVAWHAV-RR 167

Query: 135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVT 170
           S   PG++ LV G    IG   I   K  G  ++ V+
Sbjct: 168 SGFKPGDTALVLGAGP-IGLLTILALKAAGASKIIVS 203

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 67.9 bits (167), Expect = 9e-14
 Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 37/179 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA+V+ +       +L+E+++  + + +V ++V  + LN  D L   G          +
Sbjct: 1   FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGK---GGIVRTF 57

Query: 61  P---GLECSGTILSVGKNVSRWKVGDQVCALLGG--------GGYAEKVAVPAGQVLPVP 109
           P   G++ +GT++       R+K GD+V  +L G        GGYA++  V A  ++P+P
Sbjct: 58  PLVPGIDLAGTVVESSS--PRFKPGDRV--VLTGWGVGERHWGGYAQRARVKADWLVPLP 113

Query: 110 SGVSLKDAAAFPEVACTVWSTVFMTSHLS-----------PGESFLVHGGSSGIGTFAI 157
            G+S + A A          T   T+ L                 LV G + G+G+ A+
Sbjct: 114 EGLSARQAMAI--------GTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAV 164

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 67.8 bits (166), Expect = 9e-14
 Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 20/168 (11%)

Query: 6   ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQ-RKG----SYPPPKGASPY 60
           +T PG  EV   +E   P     +VL++VE   +  +D     +G     YP   G    
Sbjct: 1   LTGPGRFEV---EEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPG---G 54

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG E  G ++++G  V    VGD+V A L GG +AE     A   +P+P   SL D  AF
Sbjct: 55  PGHEGWGRVVALGPGVRGLAVGDRV-AGLSGGAFAEYDLADADHAVPLP---SLLDGQAF 110

Query: 121 P--EVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR 166
           P   + C +   VF    +  G++  V G    IG   +Q+    G R
Sbjct: 111 PGEPLGCALN--VFRRGWIRAGKTVAVIGAGF-IGLLFLQLAAAAGAR 155

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 30/110 (27%)

Query: 27  DDEVLIKVEATALNRADTLQRKGSYPPPKGASPY-PGLECSGTILSVGKNVSRWKVGDQV 85
             EVL++V+A  +  +D    +G  PP K   P   G E +G +  VG  V+  KVGD+V
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVKL--PLILGHEGAGIVEEVGPGVTGLKVGDRV 58

Query: 86  CA------------------------LLG---GGGYAEKVAVPAGQVLPV 108
                                      LG    GG+AE V VPA  ++P+
Sbjct: 59  VVYPLIPCGKCAACREGRENLCPNGKFLGVHLDGGFAEYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 23/166 (13%)

Query: 17  LQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP----PPKGASPYPGLECSGTILSV 72
           + +V  P     EVL+K     +N +D     G Y     PP       G E  G +++V
Sbjct: 20  IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDC----GFEGVGEVVAV 75

Query: 73  GKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEV------ACT 126
           G+ V+ +KVGD V A +  G +AE   VPA   +PVP           PEV        T
Sbjct: 76  GEGVTDFKVGDAV-ATMSFGAFAEYQVVPARHAVPVP--------ELKPEVLPLLVSGLT 126

Query: 127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
               +     +  GE+ LV   + G G FA+Q+ K  G  V  T  
Sbjct: 127 ASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS 172

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           +A+V+ +      + ++ +    + + +VLI+V  +++N  D L    S P  K    YP
Sbjct: 2   QALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGL---ASIPGGKIVKRYP 58

Query: 62  ---GLECSGTILSVGKNVSRWKVGDQVCAL---LG---GGGYAEKVAVPAGQVLPVPSGV 112
              G++ +GT+  V  N  R+K GD+V      LG    GGY+E   VPA  V+P+P G+
Sbjct: 59  FIPGIDLAGTV--VESNDPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGL 116

Query: 113 SLKDAAAFPEVACTVWSTV--FMTSHLSP-GESFLVHGGSSGIGTFAIQMGKCQGVRVFV 169
           +LK+A        T   ++     + L+P     LV G + G+G+ A+ +    G  V  
Sbjct: 117 TLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVA 176

Query: 170 TAG 172
           + G
Sbjct: 177 STG 179

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 46/205 (22%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRK------GSYPPP 54
           MKA+V  +      L L +V  P+   ++VLIKV+ TA+   D            + P P
Sbjct: 1   MKALVKLKAE--PGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVP 58

Query: 55  KGASPYPGLECSGTILSVGKNVSRWKVGDQVCA---LLGG-------------------- 91
                  G E  G ++ VG  V+ +KVGD+V     ++ G                    
Sbjct: 59  M----VVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVG 114

Query: 92  ----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG 147
               G +AE + +PA  V  +P  +    AA F      V  T   +  L  GE  L+ G
Sbjct: 115 VNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAV-HTAL-SFDLV-GEDVLITG 171

Query: 148 GSSG-IGTFAIQMGKCQGVR-VFVT 170
             +G IG  A  + K  G R V +T
Sbjct: 172 --AGPIGIMAAAVAKHVGARHVVIT 194

Length = 341

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 58/204 (28%), Positives = 82/204 (40%), Gaps = 44/204 (21%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRAD------TLQRKGSYPPP 54
           MKAIV T+ G     +L EV  P+    EVLIKV A ++   D          +    PP
Sbjct: 1   MKAIVKTKAGPG--AELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPP 58

Query: 55  KGASPYPGLECSGTILSVGKNVSRWKVGDQVCA------------------------LLG 90
                  G E +G ++ VG+ V+R KVGD V A                        +LG
Sbjct: 59  L----IFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILG 114

Query: 91  ---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG 147
               G +AE V VP   +      +  + A+    +   V  TV +   +S G+S L+  
Sbjct: 115 VDTDGCFAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAV-HTV-LAGDVS-GKSVLI-T 170

Query: 148 GSSGIGTFAIQMGKCQG-VRVFVT 170
           G   IG  AI + K  G   V  +
Sbjct: 171 GCGPIGLMAIAVAKAAGASLVIAS 194

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG    G ++ VG  V+ +K GD+V      G +AE+V VPA  ++P+P G+  + AA  
Sbjct: 24  PGYSSVGRVVEVGSGVTGFKPGDRVFCF---GPHAERVVVPANLLVPLPDGLPPERAALT 80

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRV 167
             +A T  + V   +    GE   V G    +G  A Q+ K  G R 
Sbjct: 81  A-LAATALNGV-RDAEPRLGERVAVVGLGL-VGLLAAQLAKAAGARE 124

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 55/199 (27%), Positives = 79/199 (39%), Gaps = 41/199 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSY--------- 51
           MKA  + +PG P  L+  E++ P+    EVL+KV A  +  +D     G Y         
Sbjct: 1   MKAAAVVEPGKP--LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMS 58

Query: 52  -PPPKGASPY-PGLECSGTILSVGKNVSRWKVGDQV---------------------CA- 87
                   P   G E  G +++VG + +  KVGD+V                     CA 
Sbjct: 59  LDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAK 118

Query: 88  ---LLG--GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGES 142
              L     GGYAE V VP  + L  P G+    AA       T +S V     L   E 
Sbjct: 119 GRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEP 178

Query: 143 FLVHGGSSGIGTFAIQMGK 161
            ++  G+ G+G  A+ + K
Sbjct: 179 VVII-GAGGLGLMALALLK 196

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 51/222 (22%), Positives = 77/222 (34%), Gaps = 73/222 (32%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            +A V  + G P  L+++EV+    +  EVL+++ AT +   D     G  P       +
Sbjct: 3   TRAAVAREAGKP--LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE-----GF 55

Query: 61  P---GLECSGTILSVGKNVSRWKVGDQV-------------CA----------------- 87
           P   G E +G + +VG+ V+  K GD V             C                  
Sbjct: 56  PAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKG 115

Query: 88  ------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---- 125
                              LG   +AE   V    ++ +       D  A  E AC    
Sbjct: 116 TMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKI-------DPDAPLEKACLLGC 168

Query: 126 ---TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG 164
              T    V  T+ + PG++  V  G  G+G  AIQ  K  G
Sbjct: 169 GVTTGIGAVVNTAKVEPGDTVAVF-GLGGVGLAAIQGAKAAG 209

Length = 366

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
          KA V+ + G P  L ++E+E    K  EV IKV AT +   D     G  P P       
Sbjct: 2  KAAVLWEKGKP--LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPTPLPVI--L 57

Query: 62 GLECSGTILSVGKNVSRWKVGDQV 85
          G E +G + S+G  V+  K GD+V
Sbjct: 58 GHEGAGIVESIGPGVTTLKPGDKV 81

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 48/151 (31%), Positives = 64/151 (42%), Gaps = 39/151 (25%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKD-DEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           MKA+V   PG   V   +EV  PQI+D  + ++KV A A+  +D    +G  P   G   
Sbjct: 1   MKAVVFKGPGDVRV---EEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGFVL 57

Query: 60  YPGLECSGTILSVGKNVSRWKVGDQV---------------------CA--LLGG----- 91
             G E  G ++ VG  V   KVGD+V                     CA   L G     
Sbjct: 58  --GHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP 115

Query: 92  ---GGYAEKVAVPA--GQVLPVPSGVSLKDA 117
              G  AE V VP   G +L +P G+S + A
Sbjct: 116 NLDGAQAEYVRVPFADGTLLKLPDGLSDEAA 146

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 35/195 (17%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+  V   PG   V +L+E   P     EVL++V+A+ L  +D       +  P      
Sbjct: 1   MRGAVF--PGDRTV-ELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVI 57

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV-------CA---------------------LLGGG 92
           PG E +G +++VG  V+ ++VGD+V       C                          G
Sbjct: 58  PGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDG 117

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG-GSSG 151
           G+AE + VP   ++P+P  +S  D A       T +  +     +S  ++ LV G G  G
Sbjct: 118 GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVG 176

Query: 152 IGTFAIQMGKCQGVR 166
           +G  A+ + +  G  
Sbjct: 177 LG--ALMLARALGAE 189

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 50/194 (25%), Positives = 74/194 (38%), Gaps = 35/194 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATA-----LNRADTLQRKGSYPPPK 55
           M+A V         L +++V DP+    +VL+KV A       L+     +         
Sbjct: 1   MRAAVFRD----GPLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGP 56

Query: 56  GASPYP-----GLECSGTILSVGKNVS-RWKVGDQVCAL-----------------LGGG 92
                      G E  G ++  G     + KVG +V +L                    G
Sbjct: 57  SLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPG 116

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           GYAE + +    +L VP G+S++DAA    +A      V   + L+PGE  LV G    I
Sbjct: 117 GYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVG-LHAV-RRARLTPGEVALVIGCGP-I 173

Query: 153 GTFAIQMGKCQGVR 166
           G   I   K +GV 
Sbjct: 174 GLAVIAALKARGVG 187

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           A V+ +PG P VL+  E++DP+   DEVL+++ AT +   D + R G  P P  A    
Sbjct: 4  TAAVVREPGGPFVLEDVELDDPR--PDEVLVRIVATGICHTDLVVRDGGLPTPLPAV--L 59

Query: 62 GLECSGTILSVGKNVSRWKVGDQVC 86
          G E +G + +VG  V+  K GD V 
Sbjct: 60 GHEGAGVVEAVGSAVTGLKPGDHVV 84

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
          KA V  + G P V++  EV  P  K +EV IK+ AT++   D L  +G       A+ +P
Sbjct: 4  KAAVAWEAGKPLVIEEIEVAPP--KANEVRIKMLATSVCHTDILAIEG-----FKATLFP 56

Query: 62 ---GLECSGTILSVGKNVSRWKVGDQVCAL 88
             G E +G + SVG+ V+  K GD+V  L
Sbjct: 57 VILGHEGAGIVESVGEGVTNLKPGDKVIPL 86

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 64/211 (30%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           KA V+  PG P  ++  E++DP  K  EVL+K+ A+ L  +D     G  P P+    YP
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDP--KAGEVLVKLVASGLCHSDEHLVTGDLPMPR----YP 56

Query: 62  ---GLECSGTILSVGKNVSRWKVGDQV-------------CA------------LLGG-- 91
              G E +G +  VG  V+  K GD V             C+            LL G  
Sbjct: 57  ILGGHEGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQ 116

Query: 92  ---------------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTV--- 127
                                G ++E   VP   V+ +   + L  A     V C V   
Sbjct: 117 ISDGTYRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACL---VGCGVPTG 173

Query: 128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQ 158
           W +    + + PG++ +V  G  G+G  A+Q
Sbjct: 174 WGSAVNIADVRPGDTVVVM-GIGGVGINAVQ 203

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 45/189 (23%), Positives = 66/189 (34%), Gaps = 49/189 (25%)

Query: 9   PGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQR------KGSYPPPKGASPYPG 62
           P  P+  +L EV  P++KD EVL++    ++   D   R      K   PP +   P  G
Sbjct: 14  PPPPDDFELVEVPLPELKDGEVLVRTLYLSV---DPYMRGWMSDAKSYSPPVQLGEPMRG 70

Query: 63  LECSGTILSVGK----NVSRWKVGDQVCALLGGGGYAEKVAVPAG---QVLPVPSGVSLK 115
                    VG+        +KVGD V    G  G+ E   V      + L    G+ L 
Sbjct: 71  G-------GVGEVVESRSPDFKVGDLV---SGFLGWQEYAVVDGASGLRKLDPSLGLPLS 120

Query: 116 DA------------AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ 163
                             E+               PGE+ +V   +  +G+   Q+ K  
Sbjct: 121 AYLGVLGMTGLTAYFGLTEIG-----------KPKPGETVVVSAAAGAVGSVVGQIAKLL 169

Query: 164 GVRVFVTAG 172
           G RV   AG
Sbjct: 170 GARVVGIAG 178

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 41/190 (21%)

Query: 15  LQLQEVEDPQIKDDEVLIKVEATALNRADT---LQRKGSYPPPKGASPYP---GLECSGT 68
           L++++V  P +K DE+LI+V+A  +  +D       K  Y    G + +P   G E SG 
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGV 98

Query: 69  ILSVGKNVSRWKVGDQVCA------------------------LLG---GGGYAEKVAVP 101
           +   GKNV  ++ GD V A                         LG    G +AE +AV 
Sbjct: 99  VEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVN 158

Query: 102 A------GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS-HLSPGESFLVHGGSSGIGT 154
           A       ++  + S     +A A  E     ++ +F+      PG   +V+G    IG 
Sbjct: 159 ARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGP-IGL 217

Query: 155 FAIQMGKCQG 164
            AI + K  G
Sbjct: 218 AAIALAKAAG 227

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 47/201 (23%), Positives = 72/201 (35%), Gaps = 58/201 (28%)

Query: 14  VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP---GLECSGTIL 70
            L+    E   +  D+V IK+    +  +D    +  +    G + YP   G E  G ++
Sbjct: 11  KLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEW----GPTKYPLVPGHEIVGIVV 66

Query: 71  SVGKNVSRWKVGD----------------------QVCA---------LLGG----GGYA 95
           +VG  V+++KVGD                      Q C             G    GGYA
Sbjct: 67  AVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYA 126

Query: 96  EKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSS----- 150
           + + V    V  +P G+    AA  P + C    TV+     SP +   V  G       
Sbjct: 127 DHIVVDERFVFKIPEGLDSAAAA--P-LLCA-GITVY-----SPLKRNGVGPGKRVGVVG 177

Query: 151 --GIGTFAIQMGKCQGVRVFV 169
             G+G  A++  K  G  V  
Sbjct: 178 IGGLGHLAVKFAKALGAEVTA 198

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-Y 60
          KA V  + G P  L ++EVE    K  EV IK+ AT +   D     G+   P+G  P  
Sbjct: 4  KAAVAWEAGKP--LSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGA--DPEGLFPVI 59

Query: 61 PGLECSGTILSVGKNVSRWKVGDQVCAL 88
           G E +G + SVG+ V+  K GD V  L
Sbjct: 60 LGHEGAGIVESVGEGVTSVKPGDHVIPL 87

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 37/161 (22%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           MKA+V   PG    + L+EV DP+I+   + +++V AT++  +D    +G  P  K    
Sbjct: 1   MKALVYLGPGK---IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMI 57

Query: 60  YPGLECSGTILSVGKNVSRWKVGDQV----------------------------CALLGG 91
             G E  G ++ VG +V R K GD+V                              L   
Sbjct: 58  L-GHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNR 116

Query: 92  --GGYAEKVAVPAGQV--LPVPSGVSLKDAAAFPEVACTVW 128
             GG AE V VP   +    +P G+  +DA    ++  T +
Sbjct: 117 IDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGF 157

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 49/205 (23%)

Query: 3   AIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRAD----TLQRKGSYPPPKGAS 58
           A V+  PG    L+L+E   P+    EVL++V A  +  +D       R G +   +   
Sbjct: 1   AAVLHGPGD---LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKE--- 54

Query: 59  PYP---GLECSGTILSVGKNVSRWKVGDQV----------CALLGGGGY----------- 94
             P   G E +GT+++VG  V+  KVGD+V          C     G Y           
Sbjct: 55  --PMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAAT 112

Query: 95  -------AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG 147
                     V  PA     +P  VSL++ A    ++  V +     + + PG++ LV G
Sbjct: 113 PPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHAC--RRAGVRPGDTVLVFG 170

Query: 148 GSSG-IGTFAIQMGKCQGV-RVFVT 170
             +G IG     + K  G  +V VT
Sbjct: 171 --AGPIGLLTAAVAKAFGATKVVVT 193

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
          KA V+ +P  P    ++E+E    K  EV IK+ AT + R+D     G        +P+P
Sbjct: 9  KAAVLWEPKKP--FSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKL-----VTPFP 61

Query: 62 ---GLECSGTILSVGKNVSRWKVGDQVCAL 88
             G E +G + SVG+ V+  K GD+V  L
Sbjct: 62 VILGHEAAGIVESVGEGVTTVKPGDKVIPL 91

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 41/202 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MK+IVI +P S   L ++E   PQ    EV +KV+   +  +D+   +G  P  K    Y
Sbjct: 1   MKSIVIEKPNS---LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAK----Y 53

Query: 61  P---GLECSGTILSVGKNVSRWKVGDQV-------------CAL-----------LG--- 90
           P   G E  G I +VG+ V   ++G++V             C++           LG   
Sbjct: 54  PRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHR 113

Query: 91  GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG-GS 149
            GG++E   VPA     +P  ++ + A        T+ + V   +  +  +  L++G G 
Sbjct: 114 DGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPF--TIAANVTGRTGPTEQDVALIYGAGP 171

Query: 150 SGIGTFAIQMGKCQGVRVFVTA 171
            G+    +  G    V+  + A
Sbjct: 172 VGLTIVQVLKG-VYNVKAVIVA 192

Length = 339

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 36/142 (25%)

Query: 12  PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQ--RKGSYPPPKGASPY-PGLECSGT 68
              L+++E   P+    EV ++V A  +  +D L   + G +   +   P   G E SG 
Sbjct: 6   AGDLRVEERPAPEPGPGEVRVRVAAGGICGSD-LHYYQHGGFGTVRLREPMVLGHEVSGV 64

Query: 69  ILSVGKNVSRWKVGDQV-------------CAL-----------LGG--------GGYAE 96
           + +VG  V+    G +V             C             LG         GG+ E
Sbjct: 65  VEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFRE 124

Query: 97  KVAVPAGQVLPVPSGVSLKDAA 118
            + V A Q +P+P G+SL+ AA
Sbjct: 125 YLVVDASQCVPLPDGLSLRRAA 146

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 43/202 (21%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKD-DEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           MK++V    G    +++ E   P+IK  D+VL+KV ++ L  +D + R        GA  
Sbjct: 1   MKSVVNDTDGI---VRVAESPIPEIKHQDDVLVKVASSGLCGSD-IPRIFK----NGAHY 52

Query: 60  YP---GLECSGTILSVGKNVSRWKVGDQV-CALL-------------------------- 89
           YP   G E SG + +VG  V     GD V C  L                          
Sbjct: 53  YPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSR 112

Query: 90  GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGS 149
             GG AE + V    +  +P+ + ++D A    +  TV    F  +    G++ ++ G  
Sbjct: 113 RDGGNAEYIVVKRKNLFALPTDMPIEDGAFIEPI--TVGLHAFHLAQGCEGKNVIIIGAG 170

Query: 150 SGIGTFAIQMGKCQGVRVFVTA 171
           + IG  AIQ     G +  VTA
Sbjct: 171 T-IGLLAIQCAVALGAKS-VTA 190

Length = 347

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 40/192 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ +        + E     +K  E L+K+E   +   D     G +    G    
Sbjct: 1   MKAAVVNK--DHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTGRIL- 57

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV----------------------CALLGGGGY---- 94
            G E  G +  VG  V+  KVGD+V                      C  +   GY    
Sbjct: 58  -GHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDG 116

Query: 95  --AEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSPGESFLVHGGS 149
             AE+  V A   + VP G+   D A    + C   T +  +   S + PG+   ++ G+
Sbjct: 117 GMAEQCIVTADYAVKVPEGL---DPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIY-GA 171

Query: 150 SGIGTFAIQMGK 161
            G+G  A+Q  K
Sbjct: 172 GGLGNLALQYAK 183

Length = 338

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 43/188 (22%)

Query: 27  DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP---GLECSGTILSVGKNVSRWKVGD 83
           D++V +K+    +  +D    K  +    G + YP   G E  G +  +GKNV ++K GD
Sbjct: 37  DEDVTVKILYCGVCHSDLHTIKNEW----GFTRYPIVPGHEIVGIVTKLGKNVKKFKEGD 92

Query: 84  QV-CALLGG----------------------------------GGYAEKVAVPAGQVLPV 108
           +V   ++ G                                  GGY++ + V    VL  
Sbjct: 93  RVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRF 152

Query: 109 PSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVF 168
           P  + L   A       TV+S +       PG+   V  G  G+G  A+++GK  G++V 
Sbjct: 153 PDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVT 211

Query: 169 VTAGLATR 176
           V +  + +
Sbjct: 212 VISSSSNK 219

Length = 360

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 52/208 (25%), Positives = 76/208 (36%), Gaps = 55/208 (26%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKD-DEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           MKA+V   PG       ++   P I++  + ++K+  T +   D    KG  P       
Sbjct: 1   MKALVYHGPGKISW---EDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVT---- 53

Query: 60  YPGL----ECSGTILSVGKNVSRWKVGDQV----------CAL---------LGGG---G 93
            PG     E  G +  VG  V+ +KVGD+V          C             GG   G
Sbjct: 54  -PGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILG 112

Query: 94  Y------AEKVAVP-AGQVL-PVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLV 145
                  AE V +P A   L  +P GV  + A     V     S +  T +    E  ++
Sbjct: 113 NLIDGTQAEYVRIPHADNSLYKLPEGVDEEAA-----VML---SDILPTGY----ECGVL 160

Query: 146 HGGSSGIGTFAIQMGKCQGVRVFVTAGL 173
           +G      T AI      G+   +TA L
Sbjct: 161 NGKVKPGDTVAIVGAGPVGLAALLTAQL 188

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 42/165 (25%), Positives = 61/165 (36%), Gaps = 43/165 (26%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKG--------SYP 52
           M+A+V   P      +L+EV  P+    E+L+KVEA  +   D     G        + P
Sbjct: 1   MRAVVCHGPQD---YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQP 57

Query: 53  PPKGASPYPGLECSGTILSVGKNVSRW--KVGDQVCA----------------------- 87
           P       PG E  G ++ +G+       KVGD+V +                       
Sbjct: 58  PYVKPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKH 117

Query: 88  -LLG-----GGGYAEKVAVPA-GQVLPVPSGVSLKDAAAFPEVAC 125
            L G      GG AE +  P    V  VP  +  +DA     +AC
Sbjct: 118 DLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILIEPLAC 162

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDDE-VLIKVEATALNRADTLQRKGSYPPPKGASP 59
          MKA+V   PG+  V   ++V DP+I+     ++++  TA+  +D    +G      G   
Sbjct: 1  MKAVVYGGPGNVAV---EDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEPG--- 54

Query: 60 YP-GLECSGTILSVGKNVSRWKVGDQVC 86
             G E  G +  VG  V   KVGD+V 
Sbjct: 55 LVLGHEAMGEVEEVGSAVESLKVGDRVV 82

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 57/221 (25%), Positives = 82/221 (37%), Gaps = 59/221 (26%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKD-DEVLIKVEATALNRADTLQRKGSYPP-PKGAS 58
           MKA+V    G   V   +EV DP+I+D  + +++V ATA+  +D     G  P   KG  
Sbjct: 1   MKALVWHGKGDVRV---EEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGD- 56

Query: 59  PYPGLECSGTILSVGKNVSRWKVGDQV--------------------------------- 85
              G E  G +  VG  V   KVGD+V                                 
Sbjct: 57  -ILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK 115

Query: 86  ------CALLGG----GGY----AEKVAVPAGQV--LPVPSGVSLKDAAAFPEVACTVWS 129
                   + G     GGY    AE V VP   V    +P  +S + A    ++  T + 
Sbjct: 116 LYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYH 175

Query: 130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFV 169
              +   + PG++  V  G   +G FA +  K  G  RV  
Sbjct: 176 AAELAE-VKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIA 214

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 53/197 (26%), Positives = 75/197 (38%), Gaps = 43/197 (21%)

Query: 3   AIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADT------LQRKGSYPPPKG 56
           A++ T+PG     +L EV  P+    EVLIKV AT++   D          +    PP+ 
Sbjct: 1   ALMKTKPG--YGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQ- 57

Query: 57  ASPYPGLECSGTILSVGKNVSRWKVGDQVCA-----------LLGG-------------- 91
                G E +G ++ +G  V   KVGD V                G              
Sbjct: 58  ---VVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVD 114

Query: 92  --GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGS 149
             G +AE   VPA  +   P  +  + A     +   V  TV +   +S G+S LV G  
Sbjct: 115 TDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAV-HTV-LAGPIS-GKSVLVTGAG 171

Query: 150 SGIGTFAIQMGKCQGVR 166
             IG  AI + K  G  
Sbjct: 172 P-IGLMAIAVAKASGAY 187

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
          +A V    G   V++  EV  PQ    E+ IKV +T+L R+D    +     P+      
Sbjct: 14 RAAVAWGAGEALVMEEVEVSPPQPL--EIRIKVVSTSLCRSDLSAWESQALFPR----IF 67

Query: 62 GLECSGTILSVGKNVSRWKVGDQVCALLGG 91
          G E SG + S+G+ V+ ++ GD V  +  G
Sbjct: 68 GHEASGIVESIGEGVTEFEKGDHVLTVFTG 97

Length = 378

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 56/214 (26%), Positives = 80/214 (37%), Gaps = 63/214 (29%)

Query: 1   MKAIVITQPGSP------EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPP 54
           M+A V+ + G+P        L ++EVE       EVL+K+ A  L  +D     G  P  
Sbjct: 1   MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-- 58

Query: 55  KGASPYP---GLECSGTILSVGKNVSRWKVGDQV-------------CA----------- 87
               P P   G E +G ++ VG+ V+  +VGD V             CA           
Sbjct: 59  ---RPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGA 115

Query: 88  -------LLGGG-----------------GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEV 123
                  LL GG                  +AE   V    V+ +   V L+ AA F   
Sbjct: 116 AANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCA 175

Query: 124 ACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAI 157
             T    V  T+ + PG+S  V  G  G+G  A+
Sbjct: 176 VLTGVGAVVNTAGVRPGQSVAVV-GLGGVGLSAL 208

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-Y 60
          +A V    G P  L+++EV+    +  EVL+++ AT +   D     G+   P+G  P  
Sbjct: 3  RAAVAWAAGQP--LKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGA--DPEGVFPVI 58

Query: 61 PGLECSGTILSVGKNVSRWKVGDQVCAL 88
           G E +G + +VG+ V+  KVGD V  L
Sbjct: 59 LGHEGAGIVEAVGEGVTSVKVGDHVIPL 86

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 19/165 (11%)

Query: 17  LQEVEDPQIKDDEVLIKVEATALNRADTLQRKG---SYPPPKGASPYPGLECSGTILSVG 73
           L+EV+ P+  + +VL++    +L+      R     SY PP       G    G  ++  
Sbjct: 29  LEEVDVPEPGEGQVLLRTLYLSLD-PYMRGRMSDAPSYAPPVE----LGEVMVGGTVAKV 83

Query: 74  --KNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPV-PSGVSLKDA---AAFPEVACTV 127
              N   ++ GD V   +G  G+ E        +  + PS   L         P +  T 
Sbjct: 84  VASNHPGFQPGDIV---VGVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGL--TA 138

Query: 128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           +  +        GE+ +V   +  +G+   Q+ K +G RV   AG
Sbjct: 139 YFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG 183

Length = 340

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 38/195 (19%)

Query: 6   ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLEC 65
           +T+PG P  +    VE P++   +V++KV    +   D                  G E 
Sbjct: 4   MTEPGKP--MVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEI 61

Query: 66  SGTILSVGKNVSRWKVGDQV----------CALLG-----------------GGGYAEKV 98
           SG ++  G   + W +G  V          C L                    GG+A  +
Sbjct: 62  SGRVIQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHI 120

Query: 99  AVPAGQVLPV------PSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
            VPA  +  V       +G+ L+  +   +   T +    + + L  G+  +V  G+ G+
Sbjct: 121 VVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVI-GAGGV 178

Query: 153 GTFAIQMGKCQGVRV 167
           G + +Q  K  G  V
Sbjct: 179 GGYMVQTAKAMGAAV 193

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
          KA V  + G P V++  EV  PQ    EV IK+  T+L   D    +     P     +P
Sbjct: 4  KAAVAWEAGKPLVIEEVEVAPPQAM--EVRIKILHTSLCHTDVYFWEAKGQTPL----FP 57

Query: 62 ---GLECSGTILSVGKNVSRWKVGDQV 85
             G E +G + SVG+ V+  K GD V
Sbjct: 58 RILGHEAAGIVESVGEGVTDLKPGDHV 84

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 44/162 (27%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA  +   G    +   E   P    ++ +++  A A   +D     G  P  +     
Sbjct: 1   MKAFAMLGIGKVGWI---EKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGER----- 52

Query: 61  PGL----ECSGTILSVGKNVSRWKVGDQVCA----------------------LLGG--- 91
            G+    E  G +  VG  V  +K GD+V                        +LGG   
Sbjct: 53  HGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF 112

Query: 92  -----GGYAEKVAVPAGQ--VLPVPSGVSLKDAAAFPEVACT 126
                G +AE   V      + P+P G++ + A   P++  T
Sbjct: 113 SNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMST 154

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 35/146 (23%)

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCA--LLGG--------------------------- 91
           PG E  G    VGKNV+++K GD+V    ++G                            
Sbjct: 64  PGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSS 123

Query: 92  ------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLV 145
                 GGY++ + V    VL +P G+     A       TV+S +            L 
Sbjct: 124 DGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLG 183

Query: 146 HGGSSGIGTFAIQMGKCQGVRVFVTA 171
             G  G+G  A+++GK  G+RV V +
Sbjct: 184 VNGLGGLGHIAVKIGKAFGLRVTVIS 209

Length = 375

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 14 VLQLQEVEDPQIKDDEVLIKVEATALNRAD-TLQRKGSYPP--PKGASPYP---GLECSG 67
           L+L++ E P+I DDE+L++V + +L  +   L  +GS     P   +  P   G E +G
Sbjct: 13 DLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAG 72

Query: 68 TILSVGKN 75
          TIL VGK 
Sbjct: 73 TILKVGKK 80

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP-PPKGASP 59
          MKAI +  PG P V ++ ++ +P+    EVL++     +   D     G Y   P G   
Sbjct: 1  MKAIAVK-PGKPGV-RVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPG-ED 57

Query: 60 Y--PGLECSGTILSVGKNVSRWKVGDQV 85
          +   G E  G +  VG   S    GD V
Sbjct: 58 FLVLGHEALGVVEEVGDG-SGLSPGDLV 84

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 47/182 (25%)

Query: 28  DEVLIKVEATALNRADTLQRKGSYPPPKGASPYP---GLECSGTILSVGKNVSRWKVGDQ 84
           ++V+IKV    +   D  Q K       G S YP   G E  G ++ VG +VS++ VGD 
Sbjct: 35  EDVVIKVIYCGICHTDLHQIKNDL----GMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDI 90

Query: 85  V-CALLGG----------------------------------GGYAEKVAVPAGQVLPVP 109
           V   ++ G                                  GG+A  + V    V+ +P
Sbjct: 91  VGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIP 150

Query: 110 SGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG--GSSGIGTFAIQMGKCQGVRV 167
            G++ + AA       TV+S +   SH    +S L  G  G  G+G   +++ K  G  V
Sbjct: 151 EGMAPEQAAPLLCAGVTVYSPL---SHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHV 207

Query: 168 FV 169
            V
Sbjct: 208 TV 209

Length = 357

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 55/223 (24%), Positives = 84/223 (37%), Gaps = 58/223 (26%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           +A V+T PG P  L+++EV  P ++   VL++V    +  +D     G  P      P P
Sbjct: 2   RAAVLTGPGKP--LEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRP----RVPLP 55

Query: 62  ---GLECSGTI---------------LSVGKNV-----------------------SRWK 80
              G E  G +               L VG  V                       +R K
Sbjct: 56  IILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK 115

Query: 81  VGDQVCALLGG--GGYAEKVAVPAGQ-VLPVPSGVSLKDAAAFPEVAC---TVWSTVFMT 134
            G +         GGYAE + +P G  ++ VP  V  + AA      C   TV + +   
Sbjct: 116 YGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAP---ANCALATVLAALDRA 172

Query: 135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATR 176
             +  G++ +V  G+  +G +A+   K  G  RV V  G   R
Sbjct: 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDGSPER 214

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 51/203 (25%), Positives = 75/203 (36%), Gaps = 36/203 (17%)

Query: 6   ITQPGSPEV--LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGL 63
           + +PG  E   L+  E   P+    E+L++V A  + R D    +G  P  +     PG 
Sbjct: 4   VERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHR-PRVTPGH 62

Query: 64  ECSGTILSVGKNVSRWKVGDQV--------CALL--------------------GGGGYA 95
           E  G +   G +   + VGD+V        C +                       GGYA
Sbjct: 63  EVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYA 122

Query: 96  EKVAVPAGQVLPVPSGVSLKDAAAFPEV-ACTVWSTVFMTSHLSPGESFLVHGGSSGIGT 154
           E   VPA     +P+G    D    P + A  +     + + L PG    ++ G  G   
Sbjct: 123 EYTTVPAAFAYRLPTGYD--DVELAPLLCAGIIGYRALLRASLPPGGRLGLY-GFGGSAH 179

Query: 155 FAIQMGKCQGVRVFV-TAGLATR 176
              Q+   QG  V V T G A R
Sbjct: 180 LTAQVALAQGATVHVMTRGAAAR 202

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.98
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.98
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.98
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.98
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.98
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.98
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.98
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.98
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.97
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.97
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.97
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.97
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.97
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.97
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.97
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.97
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.97
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.97
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.97
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.97
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.97
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.97
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.97
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.97
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.97
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.97
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.97
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.97
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.96
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.96
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.96
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.96
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.96
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.96
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.96
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.96
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.96
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.96
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.96
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.95
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.95
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.95
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.95
PLN02702	364	L-idonate 5-dehydrogenase	99.95
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.95
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.93
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.92
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.92
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.91
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.85
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.79
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.76
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.21
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	98.01
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.73
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.41
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.37
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.26
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.94
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.92
PRK06949	258	short chain dehydrogenase; Provisional	96.69
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.66
PLN02494	477	adenosylhomocysteinase	96.62
PRK07814	263	short chain dehydrogenase; Provisional	96.62
PRK07060	245	short chain dehydrogenase; Provisional	96.62
PRK08339	263	short chain dehydrogenase; Provisional	96.6
PRK05872	296	short chain dehydrogenase; Provisional	96.6
PRK08324	681	short chain dehydrogenase; Validated	96.59
PRK06057	255	short chain dehydrogenase; Provisional	96.59
PRK06139	330	short chain dehydrogenase; Provisional	96.52
PRK05867	253	short chain dehydrogenase; Provisional	96.5
PRK07062	265	short chain dehydrogenase; Provisional	96.49
PRK12828	239	short chain dehydrogenase; Provisional	96.46
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.46
PRK05866	293	short chain dehydrogenase; Provisional	96.45
PLN02780	320	ketoreductase/ oxidoreductase	96.45
PRK07576	264	short chain dehydrogenase; Provisional	96.45
PRK12829	264	short chain dehydrogenase; Provisional	96.44
PRK05854	313	short chain dehydrogenase; Provisional	96.43
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.42
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.42
PLN03209	576	translocon at the inner envelope of chloroplast su	96.41
PRK07035	252	short chain dehydrogenase; Provisional	96.41
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.4
PRK06196	315	oxidoreductase; Provisional	96.34
PRK07063	260	short chain dehydrogenase; Provisional	96.33
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	96.32
PRK06172	253	short chain dehydrogenase; Provisional	96.31
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.29
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.27
KOG1252	362	consensus Cystathionine beta-synthase and related	96.26
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.26
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.26
PRK07831	262	short chain dehydrogenase; Provisional	96.25
PRK07109	334	short chain dehydrogenase; Provisional	96.24
PRK06841	255	short chain dehydrogenase; Provisional	96.24
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.23
PRK06125	259	short chain dehydrogenase; Provisional	96.22
PRK08628	258	short chain dehydrogenase; Provisional	96.22
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.2
PRK12939	250	short chain dehydrogenase; Provisional	96.18
PRK06197	306	short chain dehydrogenase; Provisional	96.16
PRK07904	253	short chain dehydrogenase; Provisional	96.16
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.15
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.13
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.13
PRK05875	276	short chain dehydrogenase; Provisional	96.08
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.06
PRK09242	257	tropinone reductase; Provisional	96.04
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.01
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.01
PLN02565	322	cysteine synthase	96.0
PRK04148	134	hypothetical protein; Provisional	95.98
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.97
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.97
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.96
PRK05717	255	oxidoreductase; Validated	95.93
PLN03013	429	cysteine synthase	95.83
KOG0725	270	consensus Reductases with broad range of substrate	95.83
PLN02253	280	xanthoxin dehydrogenase	95.83
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.81
PLN02778	298	3,5-epimerase/4-reductase	95.81
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.8
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.8
PRK12367	245	short chain dehydrogenase; Provisional	95.78
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.76
PRK06114	254	short chain dehydrogenase; Provisional	95.65
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	95.61
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.59
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.57
PRK07775	274	short chain dehydrogenase; Provisional	95.56
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.53
PRK06523	260	short chain dehydrogenase; Provisional	95.52
KOG1208	314	consensus Dehydrogenases with different specificit	95.52
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.51
PLN02686	367	cinnamoyl-CoA reductase	95.47
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.39
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	95.35
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.34
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.32
PRK08303	305	short chain dehydrogenase; Provisional	95.31
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.28
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.27
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.25
PRK06484	520	short chain dehydrogenase; Validated	95.24
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.15
PRK06720	169	hypothetical protein; Provisional	95.14
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.12
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	95.09
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.07
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.02
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.98
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.98
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.96
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.92
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	94.9
PLN00011	323	cysteine synthase	94.86
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.85
PLN02427	386	UDP-apiose/xylose synthase	94.84
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.81
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.77
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.72
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	94.71
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	94.68
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	94.68
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	94.65
PRK07201	657	short chain dehydrogenase; Provisional	94.52
PRK06128	300	oxidoreductase; Provisional	94.5
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	94.48
PRK11761	296	cysM cysteine synthase B; Provisional	94.48
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	94.47
PRK06701	290	short chain dehydrogenase; Provisional	94.46
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.39
PRK05855	582	short chain dehydrogenase; Validated	94.29
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	94.29
PRK09134	258	short chain dehydrogenase; Provisional	94.25
PLN02214	342	cinnamoyl-CoA reductase	94.24
PRK07985	294	oxidoreductase; Provisional	94.23
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	94.21
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	94.19
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.17
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.13
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.13
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.11
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.09
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.05
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.02
PLN00198	338	anthocyanidin reductase; Provisional	94.02
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.01
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	94.0
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.98
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	93.93
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	93.9
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	93.81
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	93.81
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	93.78
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	93.72
PRK10717	330	cysteine synthase A; Provisional	93.72
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	93.64
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	93.6
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.53
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.51
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.49
TIGR01136	299	cysKM cysteine synthases. This model discriminates	93.41
PRK10669	558	putative cation:proton antiport protein; Provision	93.39
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	93.37
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	93.33
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	93.27
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	93.25
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	93.22
PRK06381	319	threonine synthase; Validated	93.15
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.14
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.08
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.08
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	93.08
PRK12744	257	short chain dehydrogenase; Provisional	93.08
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	93.08
PLN02206	442	UDP-glucuronate decarboxylase	93.05
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	93.04
PRK06110	322	hypothetical protein; Provisional	93.02
PLN02166	436	dTDP-glucose 4,6-dehydratase	92.88
PLN02970	328	serine racemase	92.8
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	92.78
PRK07048	321	serine/threonine dehydratase; Validated	92.71
PLN02356	423	phosphateglycerate kinase	92.66
PRK06608	338	threonine dehydratase; Provisional	92.62
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.61
PLN02572	442	UDP-sulfoquinovose synthase	92.61
PRK14982	340	acyl-ACP reductase; Provisional	92.56
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	92.55
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.38
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.32
PRK02991	441	D-serine dehydratase; Provisional	92.14
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.11
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	92.02
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	92.0
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.96
PRK08198	404	threonine dehydratase; Provisional	91.95
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	91.88
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	91.87
PRK13403	335	ketol-acid reductoisomerase; Provisional	91.81
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	91.8
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.71
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.68
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	91.58
PLN03139	386	formate dehydrogenase; Provisional	91.51
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.45
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	91.31
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	91.27
PRK07574	385	formate dehydrogenase; Provisional	91.22
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	91.21
PRK08813	349	threonine dehydratase; Provisional	91.13
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	91.1
PRK08638	333	threonine dehydratase; Validated	91.06
PRK13940	414	glutamyl-tRNA reductase; Provisional	91.05
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	91.05
PRK08246	310	threonine dehydratase; Provisional	90.98
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	90.92
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	90.85
PRK14031	444	glutamate dehydrogenase; Provisional	90.85
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	90.68
PRK07476	322	eutB threonine dehydratase; Provisional	90.48
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.46
PLN02928	347	oxidoreductase family protein	90.45
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	90.43
PRK13984	604	putative oxidoreductase; Provisional	90.37
PRK12814	652	putative NADPH-dependent glutamate synthase small	90.36
PRK13243	333	glyoxylate reductase; Reviewed	90.35
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	90.29
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	90.29
PLN02260	668	probable rhamnose biosynthetic enzyme	90.26
PRK06721	352	threonine synthase; Reviewed	90.21
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	90.14
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.13
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.07
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	90.07
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.94
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	89.76
PLN00016	378	RNA-binding protein; Provisional	89.76
PRK07409	353	threonine synthase; Validated	89.69
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	89.69
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	89.66
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.59
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	89.56
PRK14030	445	glutamate dehydrogenase; Provisional	89.56
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	89.55
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	89.43
PRK08197	394	threonine synthase; Validated	89.33
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	89.14
PRK05638	442	threonine synthase; Validated	89.14
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.1
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	89.04
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	89.03
PRK12831	464	putative oxidoreductase; Provisional	88.95
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	88.89
PRK08329	347	threonine synthase; Validated	88.88
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	88.88
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	88.84
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	88.81
PLN00203	519	glutamyl-tRNA reductase	88.46
PRK06815	317	hypothetical protein; Provisional	88.44
PRK07591	421	threonine synthase; Validated	88.43
PRK06352	351	threonine synthase; Validated	88.32
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	88.17
PRK09224	504	threonine dehydratase; Reviewed	88.16
PLN02569	484	threonine synthase	88.12
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	88.03
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	88.02
PRK06436	303	glycerate dehydrogenase; Provisional	87.96
PRK09496	453	trkA potassium transporter peripheral membrane com	87.96
PRK06382	406	threonine dehydratase; Provisional	87.93
PRK06487	317	glycerate dehydrogenase; Provisional	87.9
PRK06932	314	glycerate dehydrogenase; Provisional	87.67
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	87.66
PLN02256	304	arogenate dehydrogenase	87.62
PRK06450	338	threonine synthase; Validated	87.61
PRK12480	330	D-lactate dehydrogenase; Provisional	87.47
COG0569	225	TrkA K+ transport systems, NAD-binding component [	87.43
PRK05479	330	ketol-acid reductoisomerase; Provisional	87.39
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	87.36
PLN02477	410	glutamate dehydrogenase	87.32
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	87.15
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	86.97
PRK08639	420	threonine dehydratase; Validated	86.84
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	86.83
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.81
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	86.81
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	86.76
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	86.71
PRK07334	403	threonine dehydratase; Provisional	86.67
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	86.56
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	86.53
PLN02503	605	fatty acyl-CoA reductase 2	86.43
PRK06260	397	threonine synthase; Validated	86.33
PRK08526	403	threonine dehydratase; Provisional	86.33
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	86.32
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.25
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	86.21
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	86.12
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	86.1
PRK09414	445	glutamate dehydrogenase; Provisional	86.05
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	86.0
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	85.77
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	85.56
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	85.51
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.45
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.43
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	85.29
TIGR02079	409	THD1 threonine dehydratase. This model represents	85.25
PLN02996	491	fatty acyl-CoA reductase	85.07
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	84.96
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	84.81
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.76
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	84.68
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	84.58
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.43
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.41
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.32
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	84.29
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	84.24
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	84.19
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.18
PRK12779	944	putative bifunctional glutamate synthase subunit b	83.82
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.3
PLN02306	386	hydroxypyruvate reductase	83.26
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	83.24
PF10686	71	DUF2493: Protein of unknown function (DUF2493); In	83.23
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	83.21
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	83.17
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	83.15
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	83.1
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	83.08
PRK08317	241	hypothetical protein; Provisional	82.99
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	82.95
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	82.64
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	82.62
PLN02735	1102	carbamoyl-phosphate synthase	82.58
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	82.41
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	82.11
PRK12831	464	putative oxidoreductase; Provisional	81.97
PRK03910	331	D-cysteine desulfhydrase; Validated	81.84
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	81.76
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	81.68
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	81.68
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	81.67
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	81.39
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	81.08
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	81.05
PRK10537	393	voltage-gated potassium channel; Provisional	80.88
PLN02948	577	phosphoribosylaminoimidazole carboxylase	80.87
PRK12483	521	threonine dehydratase; Reviewed	80.75
PTZ00414	100	10 kDa heat shock protein; Provisional	80.72
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.66
PLN02550	591	threonine dehydratase	80.62
TIGR01042	591	V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. Th	80.4
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.02

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=6.8e-45  Score=286.48  Aligned_cols=187  Identities=35%  Similarity=0.556  Sum_probs=177.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++++++|  +++.+.+.|+|+++||+|+++++|+|++|++.++|.++... +|.++|||.+|+|+++|++++.|+
T Consensus         4 mkA~~~~~~~~p--l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~-~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           4 MKAAVLKKFGQP--LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPK-LPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             eEEEEEccCCCC--ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCC-CCccCCcceEEEEEEecCCCccCC
Confidence            899999999988  88999999999999999999999999999999999988755 899999999999999999999999


Q ss_pred             CCCEEEE----------------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCA----------------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~----------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|..                            +..+|+|+||+++++++++++|+++++++||.+.+++.|.|++| 
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al-  159 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-  159 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh-
Confidence            9999964                            11369999999999999999999999999999999999999999 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +..+++||++++|.|+ |++|.+++|+|+++|++|++++++++|+++++++|+++++|.+
T Consensus       160 k~~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~  218 (339)
T COG1064         160 KKANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS  218 (339)
T ss_pred             hhcCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC
Confidence            5589999999999998 8999999999999999999999999999999999999999964

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=4e-43  Score=280.56  Aligned_cols=193  Identities=39%  Similarity=0.676  Sum_probs=182.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++.+++.|..+++++.+.|.|+++||+|||+++++|+.|....+|......++|+++|.|++|+|+++|+++..|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            89999999999988999999999999999999999999999999999987444456799999999999999999999999


Q ss_pred             CCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHH
Q 029425           81 VGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAI  157 (193)
Q Consensus        81 ~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i  157 (193)
                      +||+|+...   .+|+|+||+.++++.++++|+++++++||++++.++|||+++....++++|+++||+||+|++|.+++
T Consensus        81 ~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~ai  160 (326)
T COG0604          81 VGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAI  160 (326)
T ss_pred             CCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHH
Confidence            999999986   67999999999999999999999999999999999999999999899999999999999999999999


Q ss_pred             HHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          158 QMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       158 ~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      |+|+++|+++++++.++++.++++++|+|+++||++
T Consensus       161 QlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~  196 (326)
T COG0604         161 QLAKALGATVVAVVSSSEKLELLKELGADHVINYRE  196 (326)
T ss_pred             HHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCc
Confidence            999999998888888888888999999999999864

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.2e-38  Score=242.74  Aligned_cols=188  Identities=25%  Similarity=0.367  Sum_probs=169.5

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      ++|+++.++.....++.++++|+++++||+|+++|+|+|++|++.+.|..+. .++|.++|||++|+|+++|++++.|++
T Consensus        11 ~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~VvkvGs~V~~~ki   89 (360)
T KOG0023|consen   11 FGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKVGSNVTGFKI   89 (360)
T ss_pred             EEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEECCCcccccc
Confidence            5788888877655777899999999999999999999999999999999887 778999999999999999999999999


Q ss_pred             CCEEEE-------------------Ec----------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHH
Q 029425           82 GDQVCA-------------------LL----------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT  126 (193)
Q Consensus        82 G~~V~~-------------------~~----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~  126 (193)
                      ||+|-.                   +|                ..|+|++|+++++.+.+++|++++++.||.++++..|
T Consensus        90 GD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGIT  169 (360)
T KOG0023|consen   90 GDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGIT  169 (360)
T ss_pred             cCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceE
Confidence            999842                   00                1366999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc-chHHHHhhcCCcEEecCC
Q 029425          127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA-TRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~-~~~~~~~~~G~~~~~~~~  192 (193)
                      +|.+| ...++.||+++-|.|+ |++|.+++|+|++||.+|+++.+++ .|.+.++.|||+.++++.
T Consensus       170 vYspL-k~~g~~pG~~vgI~Gl-GGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~  234 (360)
T KOG0023|consen  170 VYSPL-KRSGLGPGKWVGIVGL-GGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST  234 (360)
T ss_pred             Eeehh-HHcCCCCCcEEEEecC-cccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec
Confidence            99999 6678889999999998 6699999999999999999999988 566666779999999875

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.8e-37  Score=238.99  Aligned_cols=185  Identities=26%  Similarity=0.306  Sum_probs=166.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCC--CCCCCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPP--KGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~--~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |+|+++.++++   +++++.+.|++ .++||+|++.+++||++|.+++.......  .+.|+++|||.+|+|.++|+.+.
T Consensus         5 ~~A~vl~g~~d---i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    5 NLALVLRGKGD---IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cceeEEEccCc---eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            78999998776   88998898886 99999999999999999999988654322  25699999999999999999999


Q ss_pred             CCCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHH
Q 029425           78 RWKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWS  129 (193)
Q Consensus        78 ~~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~  129 (193)
                      ++++||||+.-+                            .+|++++|+..++++++++|++++++++| +..+.+.+|+
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGA-l~ePLsV~~H  160 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGA-LIEPLSVGVH  160 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcc-cccchhhhhh
Confidence            999999998422                            25999999999999999999999999987 4567899999


Q ss_pred             HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      |. +++++++|+++||+|| |.+|+++...|+++|+ +|++++-.++|++.++++||+.+.+.
T Consensus       161 Ac-r~~~vk~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~  221 (354)
T KOG0024|consen  161 AC-RRAGVKKGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPS  221 (354)
T ss_pred             hh-hhcCcccCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeec
Confidence            99 7899999999999998 9999999999999998 89999999999999999999888764

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=1.3e-36  Score=227.03  Aligned_cols=191  Identities=34%  Similarity=0.502  Sum_probs=182.7

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      |-+++++.|.++.+++++.+.|+|.++|++||.+++|+|+.|..+.+|.+. +...|.++|.|++|+|+++|++++++++
T Consensus        10 k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAvG~gvtdrkv   88 (336)
T KOG1197|consen   10 KCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAVGEGVTDRKV   88 (336)
T ss_pred             eEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEecCCcccccc
Confidence            568889999999999999999999999999999999999999999999986 4557999999999999999999999999


Q ss_pred             CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425           82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK  161 (193)
Q Consensus        82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~  161 (193)
                      ||+|.-+.+.|.|+++.++|...++++|+.++++++|++...++|||.-+++..++++|++||++.|+|++|++++|+++
T Consensus        89 GDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~r  168 (336)
T KOG1197|consen   89 GDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLR  168 (336)
T ss_pred             ccEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHH
Confidence            99999888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          162 CQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       162 ~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ..|+.+|.++.+.+|.+.+++.|+.+.|||++
T Consensus       169 a~~a~tI~~asTaeK~~~akenG~~h~I~y~~  200 (336)
T KOG1197|consen  169 AVGAHTIATASTAEKHEIAKENGAEHPIDYST  200 (336)
T ss_pred             hcCcEEEEEeccHHHHHHHHhcCCcceeeccc
Confidence            99999999999999999999999999999864

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=6.2e-36  Score=243.82  Aligned_cols=189  Identities=27%  Similarity=0.353  Sum_probs=172.1

Q ss_pred             CEEEEEcCCCC------CCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecC
Q 029425            1 MKAIVITQPGS------PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGK   74 (193)
Q Consensus         1 m~a~~~~~~~~------~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~   74 (193)
                      |||+++.+++.      +..+++++.+.|.|+++||+||+.++++|++|++.+.|.++.  .+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~   78 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGE   78 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCC
Confidence            99999999875      367999999999999999999999999999999998886542  3589999999999999999


Q ss_pred             CCCCCCCCCEEEEEcc------------------------------------------------CceeeeEEeecCCceE
Q 029425           75 NVSRWKVGDQVCALLG------------------------------------------------GGGYAEKVAVPAGQVL  106 (193)
Q Consensus        75 ~~~~~~~G~~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~  106 (193)
                      ++..+++||+|+....                                                .|+|++|+.++++.++
T Consensus        79 ~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          79 GVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceE
Confidence            9999999999986310                                                2689999999999999


Q ss_pred             ECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCC
Q 029425          107 PVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       107 ~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~  185 (193)
                      ++|+++++++++.+..+..++|+++....+++++++++|.|+ |.+|++++|+++.+|+ +|++++++++|++.++++|+
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga  237 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA  237 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence            999999999999998899999999877888999999999996 9999999999999999 69999999999999999999


Q ss_pred             cEEecCC
Q 029425          186 RVFIGFG  192 (193)
Q Consensus       186 ~~~~~~~  192 (193)
                      ++++|++
T Consensus       238 ~~~i~~~  244 (371)
T cd08281         238 TATVNAG  244 (371)
T ss_pred             ceEeCCC
Confidence            9999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.1e-35  Score=243.22  Aligned_cols=189  Identities=22%  Similarity=0.302  Sum_probs=171.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++++  +.+++.+.|.|+++||+||+.++++|++|++.+.|.+.....+|.++|||++|+|+++|+++..|+
T Consensus        11 mka~~~~~~~~~--~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~   88 (381)
T PLN02740         11 CKAAVAWGPGEP--LVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLK   88 (381)
T ss_pred             eEEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCcCC
Confidence            899999987654  778899999999999999999999999999999887643345689999999999999999999999


Q ss_pred             CCCEEEEEc---------------------------------------------------cCceeeeEEeecCCceEECC
Q 029425           81 VGDQVCALL---------------------------------------------------GGGGYAEKVAVPAGQVLPVP  109 (193)
Q Consensus        81 ~G~~V~~~~---------------------------------------------------~~g~~~~~~~~~~~~~~~~p  109 (193)
                      +||+|+...                                                   .+|+|++|+.++.+.++++|
T Consensus        89 vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP  168 (381)
T PLN02740         89 AGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKID  168 (381)
T ss_pred             CCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeEECC
Confidence            999998642                                                   14899999999999999999


Q ss_pred             CCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEE
Q 029425          110 SGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       110 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      +++++++++.++.++.++|+++....++++|++++|+|+ |.+|++++|+|+.+|+ +|+++++++++++.++++|++.+
T Consensus       169 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~  247 (381)
T PLN02740        169 PNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDF  247 (381)
T ss_pred             CCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEE
Confidence            999999999888899999998877789999999999996 9999999999999999 69999999999999999999999


Q ss_pred             ecCC
Q 029425          189 IGFG  192 (193)
Q Consensus       189 ~~~~  192 (193)
                      +|++
T Consensus       248 i~~~  251 (381)
T PLN02740        248 INPK  251 (381)
T ss_pred             Eecc
Confidence            9875

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.8e-35  Score=240.90  Aligned_cols=188  Identities=24%  Similarity=0.327  Sum_probs=170.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++...+.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus         2 ~~a~~~~~~~~~--l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~   78 (368)
T TIGR02818         2 SRAAVAWAAGQP--LKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVK   78 (368)
T ss_pred             ceEEEEecCCCC--eEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCC
Confidence            899999887654  888899999999999999999999999999988887643 24689999999999999999999999


Q ss_pred             CCCEEEEEcc------------------------------------------------CceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALLG------------------------------------------------GGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|.....                                                +|+|++|+.++.+.++++|+++
T Consensus        79 ~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l  158 (368)
T TIGR02818        79 VGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAA  158 (368)
T ss_pred             CCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCC
Confidence            9999976421                                                2689999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++++.++.++.++|+++....++++|++++|+|+ |.+|++++|+|+++|+ +|+++++++++++.++++|+++++|+
T Consensus       159 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~  237 (368)
T TIGR02818       159 PLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNP  237 (368)
T ss_pred             CHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcc
Confidence            999999999899999999877889999999999986 9999999999999999 79999999999999999999999986


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus       238 ~  238 (368)
T TIGR02818       238 N  238 (368)
T ss_pred             c
Confidence            4

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.9e-35  Score=238.06  Aligned_cols=187  Identities=26%  Similarity=0.381  Sum_probs=168.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++..++   .+++++.+.|.|+++||+||+.++++|++|+..+.+.+......|.++|||++|+|+++|+++..++
T Consensus         1 mka~~~~~~~---~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   77 (339)
T cd08239           1 MRGAVFPGDR---TVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFR   77 (339)
T ss_pred             CeEEEEecCC---ceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCC
Confidence            8999998643   4899999999999999999999999999999888766433233578999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|+..+                            .+|+|++|+.++.+.++++|+++++++++.++.++.++|+++ 
T Consensus        78 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l-  156 (339)
T cd08239          78 VGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-  156 (339)
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH-
Confidence            999998643                            258899999999999999999999999999999999999999 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ....+++|++++|+|+ |.+|++++|+++++|++ |+++++++++.+.++++|++.++|++
T Consensus       157 ~~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~  216 (339)
T cd08239         157 RRVGVSGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSG  216 (339)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCC
Confidence            5677899999999986 99999999999999998 99999999999999999999999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=8.5e-36  Score=231.54  Aligned_cols=188  Identities=27%  Similarity=0.377  Sum_probs=176.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      +||.++.++++|  |+++|.++.+|+++||+||+.++|+|++|....+|.++.+  +|.+||||++|+|++||+++..++
T Consensus         3 ~~aAV~~~~~~P--l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~--~P~vLGHEgAGiVe~VG~gVt~vk   78 (366)
T COG1062           3 TRAAVAREAGKP--LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG--FPAVLGHEGAGIVEAVGEGVTSVK   78 (366)
T ss_pred             ceEeeeecCCCC--eEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC--CceecccccccEEEEecCCccccC
Confidence            579999999998  9999999999999999999999999999999999998876  899999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|+..+                                                .-++|++|..+++..+++++++.
T Consensus        79 pGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          79 PGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence            999998532                                                01489999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +++.++.+.+...|.+-+....+++++|+++.|.|- |.+|++++|-|+..|+ ++|+++.+++|++++++||+++++|.
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~Gl-GgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~  237 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGL-GGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNP  237 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEec-cHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecc
Confidence            999999999999999998889999999999999997 9999999999999999 89999999999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus       238 ~~  239 (366)
T COG1062         238 KE  239 (366)
T ss_pred             hh
Confidence            63

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=6.8e-35  Score=236.62  Aligned_cols=187  Identities=22%  Similarity=0.296  Sum_probs=170.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|+....|..+.  .+|.++|||++|+|+++|+++.+|+
T Consensus         2 mka~~~~~~~~~--~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~   77 (358)
T TIGR03451         2 VRGVIARSKGAP--VELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVA   77 (358)
T ss_pred             cEEEEEccCCCC--CEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccC
Confidence            999999998876  788999999999999999999999999999988886542  3688999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccC
Q 029425           81 VGDQVCALL----------------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF  120 (193)
Q Consensus        81 ~G~~V~~~~----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~  120 (193)
                      +||+|...+                                        .+|+|++|+.++++.++++|+++++++++.+
T Consensus        78 ~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l  157 (358)
T TIGR03451        78 PGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLL  157 (358)
T ss_pred             CCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhh
Confidence            999997521                                        2488999999999999999999999999988


Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +..+.++|+++....+++++++++|+|+ |.+|++++|+|+.+|++ |++++++++++++++++|++.++|++
T Consensus       158 ~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~  229 (358)
T TIGR03451       158 GCGVMAGLGAAVNTGGVKRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS  229 (358)
T ss_pred             cccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCC
Confidence            8889999988877888999999999986 99999999999999995 99999999999999999999999875

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1.5e-34  Score=235.52  Aligned_cols=188  Identities=22%  Similarity=0.294  Sum_probs=170.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++.+  +++++.+.|+|+++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++|+++.+|+
T Consensus         3 ~ka~~~~~~~~~--~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   79 (369)
T cd08301           3 CKAAVAWEAGKP--LVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVTDLK   79 (369)
T ss_pred             cEEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEeCCCCCccc
Confidence            799999887655  888999999999999999999999999999988887542 34689999999999999999999999


Q ss_pred             CCCEEEEEc-------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425           81 VGDQVCALL-------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG  111 (193)
Q Consensus        81 ~G~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~  111 (193)
                      +||+|+.+.                                                 ..|+|++|+.+++..++++|++
T Consensus        80 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  159 (369)
T cd08301          80 PGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPE  159 (369)
T ss_pred             cCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCC
Confidence            999998642                                                 1378999999999999999999


Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +++++++.++..+.++|+++....++++|++|+|+|+ |.+|++++|+++.+|+ +|+++++++++.++++++|++.++|
T Consensus       160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~  238 (369)
T cd08301         160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVN  238 (369)
T ss_pred             CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEc
Confidence            9999999888899999998877789999999999986 9999999999999999 7999999999999999999999998


Q ss_pred             CC
Q 029425          191 FG  192 (193)
Q Consensus       191 ~~  192 (193)
                      ++
T Consensus       239 ~~  240 (369)
T cd08301         239 PK  240 (369)
T ss_pred             cc
Confidence            75

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.8e-34  Score=235.01  Aligned_cols=188  Identities=28%  Similarity=0.335  Sum_probs=170.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++...+.+  +++++.+.|.|+++||+||+.++++|++|+..+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus         3 ~~a~~~~~~~~~--~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~   79 (368)
T cd08300           3 CKAAVAWEAGKP--LSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSVK   79 (368)
T ss_pred             ceEEEEecCCCC--cEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccCC
Confidence            789998876654  888899999999999999999999999999988887653 24689999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|+...                                                ..|+|++|+.++++.++++|+++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  159 (368)
T cd08300          80 PGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA  159 (368)
T ss_pred             CCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence            999998641                                                12589999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++++.++.++.++|+++....+++++++++|+|+ |.+|++++|+|+.+|+ +|+++++++++++.++++|+++++|+
T Consensus       160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~  238 (368)
T cd08300         160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNP  238 (368)
T ss_pred             ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcc
Confidence            999999998899999999877788999999999986 9999999999999999 79999999999999999999999987


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus       239 ~  239 (368)
T cd08300         239 K  239 (368)
T ss_pred             c
Confidence            5

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.7e-34  Score=231.94  Aligned_cols=187  Identities=25%  Similarity=0.331  Sum_probs=167.2

Q ss_pred             EEEEcCCCCC--CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            3 AIVITQPGSP--EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         3 a~~~~~~~~~--~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |+.+.+++.+  ..+++++.+.|.|+++|++||+.++++|++|.+...|.++. ...|.++|||++|+|+++|+++..|+
T Consensus         1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   79 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGFA   79 (329)
T ss_pred             CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCcccC
Confidence            3566777655  46899999999999999999999999999999999887643 23478999999999999999999999


Q ss_pred             CCCEEEEE----------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCAL----------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|+..                            ..+|+|++|+.++++.++++|+++++++++.++.++.++|+++.
T Consensus        80 ~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~  159 (329)
T TIGR02822        80 VGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALL  159 (329)
T ss_pred             CCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHH
Confidence            99999742                            12589999999999999999999999999999999999999994


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                       ..++++|++++|+|+ |.+|++++|+|+.+|++|++++++++|+++++++|+++++|+.
T Consensus       160 -~~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~  217 (329)
T TIGR02822       160 -RASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAY  217 (329)
T ss_pred             -hcCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecccc
Confidence             688999999999997 9999999999999999999999999999999999999999853

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=5.2e-34  Score=228.45  Aligned_cols=190  Identities=31%  Similarity=0.430  Sum_probs=167.9

Q ss_pred             CEEEEEcCCCCC---CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQPGSP---EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~~~~---~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |||+++..++.|   ..+++.+.+.|.|+++||+||+.++++|++|+..+.|.++....+|.++|||++|+|+++|+++.
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            899999998876   56888899999999999999999999999999998887654445689999999999999999998


Q ss_pred             C-CCCCCEEEEEcc-CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEE-cCCchHHH
Q 029425           78 R-WKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH-GGSSGIGT  154 (193)
Q Consensus        78 ~-~~~G~~V~~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~-ga~g~~G~  154 (193)
                      + |++||+|+++.. +|+|++|+.++++.++++|++++++++++++..++++|..+ ..... ++++++|+ +++|.+|+
T Consensus        81 ~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~  158 (324)
T cd08291          81 AQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAAASALGR  158 (324)
T ss_pred             ccCCCCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHH
Confidence            6 999999998754 38999999999999999999999999988888889998554 45555 45556565 77899999


Q ss_pred             HHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          155 FAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       155 ~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++|+++.+|++|+++++++++.+.++++|+++++|++
T Consensus       159 ~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~  196 (324)
T cd08291         159 MLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSS  196 (324)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECC
Confidence            99999999999999999999999999999999999875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=6.6e-34  Score=231.05  Aligned_cols=190  Identities=24%  Similarity=0.328  Sum_probs=163.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++.+...+.+..+++.+.+.|.|+++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~   89 (360)
T PLN02586         11 QKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLGKNVKKFK   89 (360)
T ss_pred             hheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEECCCCCccC
Confidence            55555555555556888889899999999999999999999999988876542 24689999999999999999999999


Q ss_pred             CCCEEEEEc-----------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHH
Q 029425           81 VGDQVCALL-----------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC  125 (193)
Q Consensus        81 ~G~~V~~~~-----------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  125 (193)
                      +||+|+..+                                   .+|+|++|+.++++.++++|+++++++++++...+.
T Consensus        90 vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~  169 (360)
T PLN02586         90 EGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGI  169 (360)
T ss_pred             CCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchH
Confidence            999997421                                   158999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHhhcCCcEEecCC
Q 029425          126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF-ILCQPFNIRVFIGFG  192 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~-~~~~~~G~~~~~~~~  192 (193)
                      ++|+++.....+++|++++|.|+ |.+|++++|+|+.+|++|++++.++++. +.++++|+++++|++
T Consensus       170 ta~~al~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~  236 (360)
T PLN02586        170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVST  236 (360)
T ss_pred             HHHHHHHHhcccCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCC
Confidence            99999876677789999999886 9999999999999999998888777664 555789999999865

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=9.5e-34  Score=230.50  Aligned_cols=187  Identities=27%  Similarity=0.331  Sum_probs=169.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++...+.+  +++++.+.|.+.++||+||+.++++|++|++.+.|..+  ..+|.++|||++|+|+++|+++..++
T Consensus         3 ~ka~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~   78 (365)
T cd08277           3 CKAAVAWEAGKP--LVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLK   78 (365)
T ss_pred             cEEEEEccCCCC--cEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccCC
Confidence            789999876644  88999999999999999999999999999999888654  34689999999999999999999999


Q ss_pred             CCCEEEEEc-----------------------------------------------cCceeeeEEeecCCceEECCCCCC
Q 029425           81 VGDQVCALL-----------------------------------------------GGGGYAEKVAVPAGQVLPVPSGVS  113 (193)
Q Consensus        81 ~G~~V~~~~-----------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~  113 (193)
                      +||+|+...                                               ..|+|++|+.++.+.++++|++++
T Consensus        79 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~  158 (365)
T cd08277          79 PGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAP  158 (365)
T ss_pred             CCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCC
Confidence            999998742                                               137899999999999999999999


Q ss_pred             HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       114 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++++.+..++.++|+++....++++|++++|+|+ |.+|++++|+++.+|+ +|+++++++++++.++++|+++++|++
T Consensus       159 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~  237 (365)
T cd08277         159 LEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK  237 (365)
T ss_pred             HHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence            99999998899999998877888999999999986 9999999999999999 799999999999999999999999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=1.9e-33  Score=224.52  Aligned_cols=191  Identities=23%  Similarity=0.365  Sum_probs=173.7

Q ss_pred             CEEEEEcCCCCC-CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++.+++.| ..+++.+.+.|.+.++|++||+.++++|+.|+..+.|.++.....|.++|||++|+|+++|+++.++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            899999987665 3588899999999999999999999999999998888765333458899999999999999999999


Q ss_pred             CCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425           80 KVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM  159 (193)
Q Consensus        80 ~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~  159 (193)
                      ++||+|.++...|+|++|+.+++..++++|+++++++++.++..+.++|+++ ...+++++++++|+|++|.+|++++|+
T Consensus        81 ~~Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~  159 (324)
T cd08292          81 QVGQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAML  159 (324)
T ss_pred             CCCCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHH
Confidence            9999999986579999999999999999999999999999888899999988 558899999999999999999999999


Q ss_pred             HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      |+++|++++++++++++.+.++++|++++++++
T Consensus       160 a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~  192 (324)
T cd08292         160 AAARGINVINLVRRDAGVAELRALGIGPVVSTE  192 (324)
T ss_pred             HHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCC
Confidence            999999999999999999999989999988875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.9e-33  Score=229.71  Aligned_cols=185  Identities=22%  Similarity=0.257  Sum_probs=165.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.++++  .+++++.+.|.|+++||+|||.++++|++|+..+.+..    .+|.++|||++|+|+++|+++.+|+
T Consensus        13 mka~~~~~~~~--~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~~~   86 (378)
T PLN02827         13 CRAAVAWGAGE--ALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTEFE   86 (378)
T ss_pred             eEEEEEecCCC--CceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCcccC
Confidence            89999987653  38889999999999999999999999999998887642    2478999999999999999999999


Q ss_pred             CCCEEEEEcc------------------------------------------------CceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALLG------------------------------------------------GGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|+....                                                +|+|++|+.++++.++++|+++
T Consensus        87 ~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l  166 (378)
T PLN02827         87 KGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLA  166 (378)
T ss_pred             CCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCC
Confidence            9999987531                                                2789999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++++.+..++.++|+++....++++|++++|+|+ |.+|++++|+++++|++ |+++++++++.+.++++|+++++|+
T Consensus       167 ~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~  245 (378)
T PLN02827        167 PLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINP  245 (378)
T ss_pred             CHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcc
Confidence            999998888888899987766788999999999996 99999999999999994 7777789999999999999999987


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus       246 ~  246 (378)
T PLN02827        246 N  246 (378)
T ss_pred             c
Confidence            5

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-33  Score=226.26  Aligned_cols=183  Identities=18%  Similarity=0.216  Sum_probs=156.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhc-CCCCC-CCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRK-GSYPP-PKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~-~~~~~-~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |+++++..+++   +++++.+.| ++++||+|||.++++|++|++.+. +.+.. ..++|.++|||++|+|+++  ++.+
T Consensus         5 ~~~~~~~~~~~---~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~   78 (343)
T PRK09880          5 TQSCVVAGKKD---VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG   78 (343)
T ss_pred             ceEEEEecCCc---eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence            67889886554   888998887 689999999999999999998775 33221 2346899999999999999  6788


Q ss_pred             CCCCCEEEEEc--------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHH
Q 029425           79 WKVGDQVCALL--------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT  126 (193)
Q Consensus        79 ~~~G~~V~~~~--------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~  126 (193)
                      |++||+|...+                                .+|+|+||+.++++.++++|+++++++++ +..++.+
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~~~  157 (343)
T PRK09880         79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPLAV  157 (343)
T ss_pred             CCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHHHH
Confidence            99999997421                                25999999999999999999999987655 5577889


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|+++. .....++++++|+|+ |.+|++++|+++.+|+ +|+++++++++++.++++|+++++|++
T Consensus       158 a~~al~-~~~~~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~  222 (343)
T PRK09880        158 AIHAAH-QAGDLQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQ  222 (343)
T ss_pred             HHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCC
Confidence            999984 445568999999997 9999999999999999 689999999999999999999999875

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=3.6e-33  Score=211.85  Aligned_cols=189  Identities=28%  Similarity=0.446  Sum_probs=176.4

Q ss_pred             EEEEEcCCCCC-CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            2 KAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         2 ~a~~~~~~~~~-~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |+++....++| ..+++.+.++|+...++|+|++.++.|||+|+..++|.|+....+|.+-|.|++|.|+.+|+++..|+
T Consensus        21 kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk  100 (354)
T KOG0025|consen   21 KALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGFK  100 (354)
T ss_pred             ceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCccC
Confidence            78899999987 57889999999988888999999999999999999999999989999999999999999999999999


Q ss_pred             CCCEEEEEccC-ceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425           81 VGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM  159 (193)
Q Consensus        81 ~G~~V~~~~~~-g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~  159 (193)
                      +||.|+....+ |.|++|...+++.++++++.+++++||++....+|||..|....++++||+|+-.||++.+|++++|+
T Consensus       101 ~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQl  180 (354)
T KOG0025|consen  101 PGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQL  180 (354)
T ss_pred             CCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHH
Confidence            99999987654 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCEEEEEeCCcchHHHH----hhcCCcEEec
Q 029425          160 GKCQGVRVFVTAGLATRFILC----QPFNIRVFIG  190 (193)
Q Consensus       160 ~~~~g~~v~~~~~~~~~~~~~----~~~G~~~~~~  190 (193)
                      |+++|++.+.++|+....+.+    +.+||++||.
T Consensus       181 aka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViT  215 (354)
T KOG0025|consen  181 AKALGIKTINVVRDRPNIEELKKQLKSLGATEVIT  215 (354)
T ss_pred             HHHhCcceEEEeecCccHHHHHHHHHHcCCceEec
Confidence            999999999999987766554    5689999984

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.3e-32  Score=224.56  Aligned_cols=189  Identities=24%  Similarity=0.326  Sum_probs=162.3

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      ||+.+...+.+..++..+.+.|.|+++||+|||.++++|++|++.+.|.+.. ..+|.++|||++|+|+++|+++.+|++
T Consensus         6 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~v   84 (375)
T PLN02178          6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKE   84 (375)
T ss_pred             eeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCC
Confidence            5556565555556888888889999999999999999999999998876532 235889999999999999999999999


Q ss_pred             CCEEEEE-----c------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHH
Q 029425           82 GDQVCAL-----L------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT  126 (193)
Q Consensus        82 G~~V~~~-----~------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~  126 (193)
                      ||+|...     +                              .+|+|++|+.++++.++++|++++++++++++....+
T Consensus        85 GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~t  164 (375)
T PLN02178         85 GDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGIT  164 (375)
T ss_pred             CCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchH
Confidence            9999742     1                              1589999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch-HHHHhhcCCcEEecCC
Q 029425          127 VWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR-FILCQPFNIRVFIGFG  192 (193)
Q Consensus       127 a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~-~~~~~~~G~~~~~~~~  192 (193)
                      +|+++..... .+++++++|.|+ |.+|++++|+|+.+|++|++++.++++ .+.++++|+++++|++
T Consensus       165 a~~al~~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~  231 (375)
T PLN02178        165 VYSPMKYYGMTKESGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTT  231 (375)
T ss_pred             HHHHHHHhCCCCCCCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCc
Confidence            9998855443 368999999987 999999999999999999998877554 6788899999999875

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=9.6e-33  Score=221.74  Aligned_cols=190  Identities=26%  Similarity=0.402  Sum_probs=172.8

Q ss_pred             EEEEEcCC---CCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            2 KAIVITQP---GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         2 ~a~~~~~~---~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      ||+++.++   +.++.++..+.+.|+++++||+||+.++++|+.|...+.+..+. ..+|.++|+|++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   79 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTL   79 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCC
Confidence            57888887   77888999999999999999999999999999999888776542 235789999999999999999999


Q ss_pred             CCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCC-----CCeEEEEcCCc
Q 029425           79 WKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP-----GESFLVHGGSS  150 (193)
Q Consensus        79 ~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~~~vli~ga~g  150 (193)
                      |++||+|+++.   ..|+|++|+.++.+.++++|+++++++++.++.++++||+++....++++     +++++|+|++|
T Consensus        80 ~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g  159 (336)
T TIGR02817        80 FKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAG  159 (336)
T ss_pred             CCCCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCc
Confidence            99999999874   25899999999999999999999999999999999999999988888877     99999999999


Q ss_pred             hHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          151 GIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       151 ~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      .+|++++|+|+.+ |++|+.+++++++.++++++|+++++|++
T Consensus       160 ~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~  202 (336)
T TIGR02817       160 GVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHS  202 (336)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECC
Confidence            9999999999998 99999999999999999999999999854

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.5e-33  Score=214.28  Aligned_cols=189  Identities=26%  Similarity=0.333  Sum_probs=175.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      +||.+..++++|  |.++|++.++|+.+||+||+.++++|++|...+.|..+ ...+|.++|||++|+|+.+|.++.+++
T Consensus         8 CKAAV~w~a~~P--L~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~-~~~fP~IlGHEaaGIVESvGegV~~vk   84 (375)
T KOG0022|consen    8 CKAAVAWEAGKP--LVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDP-EGLFPVILGHEAAGIVESVGEGVTTVK   84 (375)
T ss_pred             EeEeeeccCCCC--eeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCc-cccCceEecccceeEEEEecCCccccC
Confidence            589999999988  99999999999999999999999999999999999874 345799999999999999999999999


Q ss_pred             CCCEEEEEc-------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425           81 VGDQVCALL-------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG  111 (193)
Q Consensus        81 ~G~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~  111 (193)
                      +||+|+.+.                                                 .-.+|+||-+++...+.++++.
T Consensus        85 ~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~  164 (375)
T KOG0022|consen   85 PGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPS  164 (375)
T ss_pred             CCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCC
Confidence            999998532                                                 0148999999999999999999


Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      ..++.++.+.+...|.|-|....+++++|+++.|.|- |.+|+++++-+|+.|| ++|.++-+++|.+.++++|+..++|
T Consensus       165 aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGL-G~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iN  243 (375)
T KOG0022|consen  165 APLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGL-GGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFIN  243 (375)
T ss_pred             CChhheeEeeccccccchhhhhhcccCCCCEEEEEec-chHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecC
Confidence            9999999999999999998888999999999999996 9999999999999998 8999999999999999999999999


Q ss_pred             CCC
Q 029425          191 FGY  193 (193)
Q Consensus       191 ~~~  193 (193)
                      ++|
T Consensus       244 p~d  246 (375)
T KOG0022|consen  244 PKD  246 (375)
T ss_pred             hhh
Confidence            864

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.5e-32  Score=222.61  Aligned_cols=185  Identities=20%  Similarity=0.236  Sum_probs=153.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCC--CCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPP--KGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~--~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||++++..+ ++ +++++.+.|+|+++||+|||.++++|++|++.+.|.++..  ...|.++|||++|+|+++|++ ..
T Consensus         1 mka~~~~~~~-~~-l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~   77 (355)
T cd08230           1 MKAIAVKPGK-PG-VRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SG   77 (355)
T ss_pred             CceeEecCCC-CC-CeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CC
Confidence            8999998543 34 8999999999999999999999999999999998875432  235789999999999999999 99


Q ss_pred             CCCCCEEEEEc------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHH
Q 029425           79 WKVGDQVCALL------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVW  128 (193)
Q Consensus        79 ~~~G~~V~~~~------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~  128 (193)
                      |++||+|+..+                              .+|+|++|+.++++.++++|++++  +++++..+..+++
T Consensus        78 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~--~~a~~~~p~~~~~  155 (355)
T cd08230          78 LSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA--DVGVLLEPLSVVE  155 (355)
T ss_pred             CCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC--cceeecchHHHHH
Confidence            99999998642                              248899999999999999999998  4444555665555


Q ss_pred             HHHHH------hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEecCC
Q 029425          129 STVFM------TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       129 ~~l~~------~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~~~  192 (193)
                      .++..      ..+.+++++++|+|+ |.+|++++|+|+.+|++|+++++   +++|++.++++|++. ++++
T Consensus       156 ~a~~~~~~~~~~~~~~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~  226 (355)
T cd08230         156 KAIEQAEAVQKRLPTWNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY-VNSS  226 (355)
T ss_pred             HHHHHHhhhhhhcccCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE-ecCC
Confidence            44422      223578999999996 99999999999999999999987   678999999999986 4553

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=2.7e-32  Score=223.78  Aligned_cols=182  Identities=22%  Similarity=0.372  Sum_probs=153.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCC-------CCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEec
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIK-------DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVG   73 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~-------~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG   73 (193)
                      |||+++..++.   +++++.+.|.|+       ++||+|||+++++|++|++.+.|.++.  .+|.++|||++|+|+++|
T Consensus         3 mka~v~~~~~~---~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG   77 (393)
T TIGR02819         3 NRGVVYLGPGK---VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKG   77 (393)
T ss_pred             ceEEEEecCCc---eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEc
Confidence            89999987664   888999988874       689999999999999999998876532  368999999999999999


Q ss_pred             CCCCCCCCCCEEEEEc-------------------------------------cCceeeeEEeecCC--ceEECCCCCCH
Q 029425           74 KNVSRWKVGDQVCALL-------------------------------------GGGGYAEKVAVPAG--QVLPVPSGVSL  114 (193)
Q Consensus        74 ~~~~~~~~G~~V~~~~-------------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~  114 (193)
                      +++..|++||+|+..+                                     .+|+|+||+.+++.  .++++|++++.
T Consensus        78 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~  157 (393)
T TIGR02819        78 RDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQA  157 (393)
T ss_pred             CccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCcccc
Confidence            9999999999996521                                     24899999999964  69999998653


Q ss_pred             ----HhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEE-EeCCcchHHHHhhcCCcEEe
Q 029425          115 ----KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFV-TAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       115 ----~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~-~~~~~~~~~~~~~~G~~~~~  189 (193)
                          .+++++..++.++|+++. ..+++++++++|.|+ |.+|++++|+|+.+|+++++ +++++++++.++++|++.++
T Consensus       158 ~~~~~~~a~l~~~~~ta~~a~~-~~~~~~g~~VlV~G~-G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~  235 (393)
T TIGR02819       158 LEKIRDLTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGA-GPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVD  235 (393)
T ss_pred             cccccceeeeccHHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEe
Confidence                346677888999999984 578999999999775 99999999999999997554 55678899999999997543

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=7.1e-32  Score=216.89  Aligned_cols=187  Identities=33%  Similarity=0.510  Sum_probs=168.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+  +++++.+.|++.++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++|+++.+++
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~~   77 (333)
T cd08296           1 YKAVQVTEPGGP--LELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRWK   77 (333)
T ss_pred             CeEEEEccCCCC--ceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccCC
Confidence            899999987543  888899999999999999999999999999988886543 23578999999999999999999999


Q ss_pred             CCCEEEEE----------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCAL----------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|+..                            ..+|++++|+.++.+.++++|+++++.+++.++.++.++|+++.
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~  157 (333)
T cd08296          78 VGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALR  157 (333)
T ss_pred             CCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHH
Confidence            99999762                            22588999999999999999999999999999999999999985


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      . .+++++++++|+| +|.+|++++++++++|++|+.+++++++.+.++++|+++++|++
T Consensus       158 ~-~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~  215 (333)
T cd08296         158 N-SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTS  215 (333)
T ss_pred             h-cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCC
Confidence            4 4899999999999 69999999999999999999999999999999999999999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=4.5e-32  Score=218.33  Aligned_cols=192  Identities=30%  Similarity=0.415  Sum_probs=172.4

Q ss_pred             CEEEEEcCCCCC-CceEEEeecCCCCCC-CeEEEEEeEecCChhhhhhhcCCCCCCCC----CCCCCCcceEEEEEEecC
Q 029425            1 MKAIVITQPGSP-EVLQLQEVEDPQIKD-DEVLIKVEATALNRADTLQRKGSYPPPKG----ASPYPGLECSGTILSVGK   74 (193)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~~~~~~-~evlV~v~~~~v~~~d~~~~~~~~~~~~~----~p~~lg~e~~G~V~~vG~   74 (193)
                      |||+++.+++.+ +.+.+++.+.|+|.+ ++++||+.++++|+.|...+.+..+....    .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            999999988765 368889999888887 99999999999999999988887643222    577899999999999999


Q ss_pred             CCCCCCCCCEEEEEc-cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHH
Q 029425           75 NVSRWKVGDQVCALL-GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIG  153 (193)
Q Consensus        75 ~~~~~~~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G  153 (193)
                      ++..|++||+|++.. ..|+|++|+.++.+.++++|+++++++++.++.++.++|+++.....++++++++|+|++|.+|
T Consensus        81 ~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg  160 (341)
T cd08290          81 GVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVG  160 (341)
T ss_pred             CCCCCCCCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHH
Confidence            999999999999875 3689999999999999999999999999999999999999997778899999999999999999


Q ss_pred             HHHHHHHHHCCCEEEEEeCCc----chHHHHhhcCCcEEecCC
Q 029425          154 TFAIQMGKCQGVRVFVTAGLA----TRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       154 ~~~i~~~~~~g~~v~~~~~~~----~~~~~~~~~G~~~~~~~~  192 (193)
                      ++++++|+++|++++++++++    ++.++++++|++++++++
T Consensus       161 ~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  203 (341)
T cd08290         161 QAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEE  203 (341)
T ss_pred             HHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCc
Confidence            999999999999999998876    668888899999998865

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-31  Score=214.51  Aligned_cols=192  Identities=40%  Similarity=0.694  Sum_probs=175.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++..++.+..+++++.+.|++.++|++||+.++++|+.|.....+.++.....|.++|+|++|+|+++|+++..++
T Consensus         2 m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   81 (334)
T PTZ00354          2 MRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFK   81 (334)
T ss_pred             cEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCCC
Confidence            89999999887767888888888899999999999999999999888876654444567899999999999999999999


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                      +||+|+++..+|++++|+.++.+.++++|+++++.+++.++.++.++|+++.....++++++++|+|++|.+|+++++++
T Consensus        82 ~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a  161 (334)
T PTZ00354         82 EGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLA  161 (334)
T ss_pred             CCCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence            99999998667999999999999999999999999999999999999999977788999999999999999999999999


Q ss_pred             HHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++|++++++++++++.++++++|++.++++.
T Consensus       162 ~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  193 (334)
T PTZ00354        162 EKYGAATIITTSSEEKVDFCKKLAAIILIRYP  193 (334)
T ss_pred             HHcCCEEEEEeCCHHHHHHHHHcCCcEEEecC
Confidence            99999988899999999999999999888764

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=8.4e-32  Score=218.51  Aligned_cols=188  Identities=22%  Similarity=0.274  Sum_probs=164.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ++|+++..++.+  +++++++.|.++++||+||+.++++|++|+..+.+.++. ..+|.++|||++|+|+++|+++.+|+
T Consensus        10 ~~~~~~~~~~~~--~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~   86 (357)
T PLN02514         10 TTGWAARDPSGH--LSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFT   86 (357)
T ss_pred             EEEEEEecCCCC--ceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCccccc
Confidence            478888888755  888999999999999999999999999999988876543 23588999999999999999999999


Q ss_pred             CCCEEEEE-----------------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHH
Q 029425           81 VGDQVCAL-----------------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC  125 (193)
Q Consensus        81 ~G~~V~~~-----------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  125 (193)
                      +||+|+..                                   ..+|+|++|+.++.+.++++|++++++++++++.++.
T Consensus        87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~  166 (357)
T PLN02514         87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGV  166 (357)
T ss_pred             CCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHH
Confidence            99999731                                   1258999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH-hhcCCcEEecCC
Q 029425          126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC-QPFNIRVFIGFG  192 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~-~~~G~~~~~~~~  192 (193)
                      ++|+++......++|++++|+|+ |.+|++++|+|+++|++++++++++++...+ +++|++.++++.
T Consensus       167 ta~~al~~~~~~~~g~~vlV~G~-G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~  233 (357)
T PLN02514        167 TVYSPLSHFGLKQSGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSS  233 (357)
T ss_pred             HHHHHHHHcccCCCCCeEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCC
Confidence            99999976666789999999975 9999999999999999999998888777655 569999887754

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=6.6e-32  Score=217.49  Aligned_cols=178  Identities=20%  Similarity=0.225  Sum_probs=156.0

Q ss_pred             CCceEEEeecC----CCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcce--EEEEEEecCCCCCCCCCCEE
Q 029425           12 PEVLQLQEVED----PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLEC--SGTILSVGKNVSRWKVGDQV   85 (193)
Q Consensus        12 ~~~~~~~~~~~----~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~--~G~V~~vG~~~~~~~~G~~V   85 (193)
                      +++|++++.+.    |+|+++||||||+++++|+.|+..+.|........|.++|+++  .|.+..+|+++..|++||+|
T Consensus        18 ~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V   97 (338)
T cd08295          18 ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLV   97 (338)
T ss_pred             ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEE
Confidence            56799999987    7899999999999999999999988875432224578888754  45666678888899999999


Q ss_pred             EEEccCceeeeEEeecC-CceEECC-CCCCHH-hHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHH
Q 029425           86 CALLGGGGYAEKVAVPA-GQVLPVP-SGVSLK-DAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC  162 (193)
Q Consensus        86 ~~~~~~g~~~~~~~~~~-~~~~~~p-~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~  162 (193)
                      +++   |+|+||+.+++ ..++++| +++++. ++++++++++|||+++.+..++++|++++|+|++|.+|++++|+|+.
T Consensus        98 ~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~  174 (338)
T cd08295          98 WGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKL  174 (338)
T ss_pred             Eec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence            876   57999999999 7899995 678876 78889999999999998888999999999999999999999999999


Q ss_pred             CCCEEEEEeCCcchHHHHhh-cCCcEEecCC
Q 029425          163 QGVRVFVTAGLATRFILCQP-FNIRVFIGFG  192 (193)
Q Consensus       163 ~g~~v~~~~~~~~~~~~~~~-~G~~~~~~~~  192 (193)
                      +|++|+.+++++++.+++++ +|+++++||+
T Consensus       175 ~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~  205 (338)
T cd08295         175 KGCYVVGSAGSDEKVDLLKNKLGFDDAFNYK  205 (338)
T ss_pred             cCCEEEEEeCCHHHHHHHHHhcCCceeEEcC
Confidence            99999999999999999998 9999999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=1.6e-31  Score=216.95  Aligned_cols=187  Identities=29%  Similarity=0.462  Sum_probs=167.9

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC---
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR---   78 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~---   78 (193)
                      ||+++.++++  .+++++.+.|.|+++||+||+.++++|++|+....|.++. ..+|.++|||++|+|+++|+++..   
T Consensus         2 ka~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   78 (361)
T cd08231           2 RAAVLTGPGK--PLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVA   78 (361)
T ss_pred             eEEEEcCCCC--CCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCcccccc
Confidence            7899998873  4889999999999999999999999999999988887652 346889999999999999999876   


Q ss_pred             ---CCCCCEEEEEc----------------------------------cCceeeeEEeecCC-ceEECCCCCCHHhHccC
Q 029425           79 ---WKVGDQVCALL----------------------------------GGGGYAEKVAVPAG-QVLPVPSGVSLKDAAAF  120 (193)
Q Consensus        79 ---~~~G~~V~~~~----------------------------------~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~  120 (193)
                         |++||+|+.+.                                  ..|+|++|+.++++ .++++|++++..+++++
T Consensus        79 ~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~  158 (361)
T cd08231          79 GEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPA  158 (361)
T ss_pred             CCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHh
Confidence               99999998762                                  25899999999986 79999999999889888


Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.++++||+++......++++++||+|+ |.+|++++++|+++|+ +|+++++++++.++++++|++.+++++
T Consensus       159 ~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  230 (361)
T cd08231         159 NCALATVLAALDRAGPVGAGDTVVVQGA-GPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDID  230 (361)
T ss_pred             cCHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCc
Confidence            8999999999977777779999999985 9999999999999999 999999999999999999999998875

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=1.1e-31  Score=216.58  Aligned_cols=179  Identities=16%  Similarity=0.187  Sum_probs=152.2

Q ss_pred             CCceEEEeecCCCCC-CCeEEEEEeEecCChhhhhhhcCCC--CCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEE
Q 029425           12 PEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSY--PPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCAL   88 (193)
Q Consensus        12 ~~~~~~~~~~~~~~~-~~evlV~v~~~~v~~~d~~~~~~~~--~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~   88 (193)
                      ++.+++++.+.|.|. ++||+|||.++++|+.|+.......  .....+|.++|+|++|+|+++|++++.|++||+|+++
T Consensus        20 ~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   99 (345)
T cd08293          20 AENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF   99 (345)
T ss_pred             ccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence            467899999999874 9999999999999999864332111  1112357899999999999999999999999999876


Q ss_pred             ccCceeeeEEeecCCceEECCCCCCHH----hHccCcchHHHHHHHHHHhcCCCCC--CeEEEEcCCchHHHHHHHHHHH
Q 029425           89 LGGGGYAEKVAVPAGQVLPVPSGVSLK----DAAAFPEVACTVWSTVFMTSHLSPG--ESFLVHGGSSGIGTFAIQMGKC  162 (193)
Q Consensus        89 ~~~g~~~~~~~~~~~~~~~~p~~~~~~----~aa~~~~~~~~a~~~l~~~~~~~~~--~~vli~ga~g~~G~~~i~~~~~  162 (193)
                      .  +.|++|+.++++.++++|+++++.    ++++++.++.+||+++.+..+++++  ++++|+|++|.+|++++|+|++
T Consensus       100 ~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~  177 (345)
T cd08293         100 N--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRL  177 (345)
T ss_pred             C--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence            3  679999999999999999985332    2456778899999999878888877  9999999999999999999999


Q ss_pred             CCC-EEEEEeCCcchHHHHhh-cCCcEEecCC
Q 029425          163 QGV-RVFVTAGLATRFILCQP-FNIRVFIGFG  192 (193)
Q Consensus       163 ~g~-~v~~~~~~~~~~~~~~~-~G~~~~~~~~  192 (193)
                      +|+ +|+++++++++.+++++ +|++.+++++
T Consensus       178 ~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~  209 (345)
T cd08293         178 LGCSRVVGICGSDEKCQLLKSELGFDAAINYK  209 (345)
T ss_pred             cCCCEEEEEcCCHHHHHHHHHhcCCcEEEECC
Confidence            999 89999999999999986 9999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=1.4e-31  Score=218.42  Aligned_cols=187  Identities=26%  Similarity=0.332  Sum_probs=168.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++..++.+  +++++.+.|.+.++||+||+.++++|++|.+.+.|.+.  ..+|.++|||++|+|+++|+++..++
T Consensus         8 ~~a~~~~~~~~~--~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~--~~~p~v~G~e~~G~V~~vG~~v~~~~   83 (373)
T cd08299           8 CKAAVLWEPKKP--FSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV--TPFPVILGHEAAGIVESVGEGVTTVK   83 (373)
T ss_pred             eEEEEEecCCCC--cEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC--CCCCccccccceEEEEEeCCCCccCC
Confidence            688888876554  88899999999999999999999999999999888753  23578999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|..++                                                ..|+|++|+.++.+.++++|+++
T Consensus        84 ~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l  163 (373)
T cd08299          84 PGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAA  163 (373)
T ss_pred             CCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCCC
Confidence            999998652                                                24889999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++++.+..++.++|+++....+++++++++|+|+ |.+|++++++++++|+ +|+++++++++++.++++|+++++++
T Consensus       164 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~  242 (373)
T cd08299         164 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP  242 (373)
T ss_pred             ChHHhheeccchHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecc
Confidence            999999999999999999877889999999999975 9999999999999999 89999999999999999999999986


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      .
T Consensus       243 ~  243 (373)
T cd08299         243 Q  243 (373)
T ss_pred             c
Confidence            4

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=2.4e-31  Score=212.41  Aligned_cols=190  Identities=26%  Similarity=0.400  Sum_probs=169.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++.++.+++++.+.|.+++++++||+.++++|++|+..+.|.++.....|.++|||++|+|+++  +++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            899999998876679999999999999999999999999999999888876544445789999999999998  456799


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCC--C-CCCeEEEEcCCch
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL--S-PGESFLVHGGSSG  151 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~--~-~~~~vli~ga~g~  151 (193)
                      +||+|++..      .+|+|++|+.++++.++++|+++++++++.+++.+.++|++++.....  . .+++++|+|++|.
T Consensus        79 ~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~  158 (325)
T cd05280          79 EGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGG  158 (325)
T ss_pred             CCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccH
Confidence            999998763      368999999999999999999999999999999999999998655433  5 4579999999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|++++++++.+|++|+++++++++.+.++++|++++++++
T Consensus       159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  199 (325)
T cd05280         159 VGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDRE  199 (325)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcch
Confidence            99999999999999999999999999999999999998764

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=7.6e-32  Score=218.11  Aligned_cols=184  Identities=22%  Similarity=0.387  Sum_probs=161.5

Q ss_pred             EEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCC
Q 029425            4 IVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGD   83 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~   83 (193)
                      +++++++.+  +++++.+.|.++++|++||+.++++|++|++.+.+.+.....+|.++|||++|+|+++|+++..+ +||
T Consensus         2 ~~~~~~g~~--~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~Gd   78 (349)
T TIGR03201         2 WMMTEPGKP--MVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGK   78 (349)
T ss_pred             ceEecCCCC--ceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCC
Confidence            456666654  78889999999999999999999999999987644332223468899999999999999999877 999


Q ss_pred             EEEEEc---------------------------cCceeeeEEeecCCceEECCC------CCCHHhHccCcchHHHHHHH
Q 029425           84 QVCALL---------------------------GGGGYAEKVAVPAGQVLPVPS------GVSLKDAAAFPEVACTVWST  130 (193)
Q Consensus        84 ~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~------~~~~~~aa~~~~~~~~a~~~  130 (193)
                      +|+..+                           .+|+|++|+.++.+.++++|+      ++++++++++..++.++|++
T Consensus        79 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a  158 (349)
T TIGR03201        79 AVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQA  158 (349)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHH
Confidence            997621                           258999999999999999999      89999998899999999999


Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +. ..+++++++++|+|+ |.+|++++|+|+++|++|++++++++++++++++|+++++|+.
T Consensus       159 ~~-~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~  218 (349)
T TIGR03201       159 AV-QAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPK  218 (349)
T ss_pred             HH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCc
Confidence            85 578899999999998 9999999999999999999999999999999999999999864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=2.4e-31  Score=212.89  Aligned_cols=182  Identities=20%  Similarity=0.284  Sum_probs=158.6

Q ss_pred             CEEEEEcCC--CCC--CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCC
Q 029425            1 MKAIVITQP--GSP--EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNV   76 (193)
Q Consensus         1 m~a~~~~~~--~~~--~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~   76 (193)
                      ||+|++.++  +++  +.+++++.+.|+|+++||+|||.++++|+.|......  .  ...|.++|+|++|+|++   .+
T Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~--~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           3 AKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L--NEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             ceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C--CCCCcEecceEEEEEec---CC
Confidence            899999993  554  7899999999999999999999999999987652211  1  13578999999999985   44


Q ss_pred             CCCCCCCEEEEEccCceeeeEEeecCC---ceEECCCCCC-----HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcC
Q 029425           77 SRWKVGDQVCALLGGGGYAEKVAVPAG---QVLPVPSGVS-----LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGG  148 (193)
Q Consensus        77 ~~~~~G~~V~~~~~~g~~~~~~~~~~~---~~~~~p~~~~-----~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga  148 (193)
                      ..|++||+|+++   ++|++|+.++.+   .++++|++++     ...+++++.+++|||+++....++++|++++|+|+
T Consensus        76 ~~~~~Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga  152 (329)
T cd08294          76 SKFPVGTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGA  152 (329)
T ss_pred             CCCCCCCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecC
Confidence            679999999876   469999999999   9999999987     23334678899999999988899999999999999


Q ss_pred             CchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          149 SSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       149 ~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|.+|.+++|+|+.+|++|+++++++++.++++++|+++++|++
T Consensus       153 ~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~  196 (329)
T cd08294         153 AGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYK  196 (329)
T ss_pred             ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence            99999999999999999999999999999999999999999886

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1.8e-31  Score=215.97  Aligned_cols=186  Identities=32%  Similarity=0.444  Sum_probs=163.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCC-CCC---------CCCCCCCCCcceEEEEE
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS-YPP---------PKGASPYPGLECSGTIL   70 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~-~~~---------~~~~p~~lg~e~~G~V~   70 (193)
                      |||+++.+++   .+++++.+.|+++++||+||+.++++|++|+....+. ...         ....|.++|+|++|+|+
T Consensus         1 mka~~~~~~~---~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~   77 (351)
T cd08233           1 MKAARYHGRK---DIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVV   77 (351)
T ss_pred             CceEEEecCC---ceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEE
Confidence            8999998754   3889999999999999999999999999998766532 111         11257899999999999


Q ss_pred             EecCCCCCCCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcc
Q 029425           71 SVGKNVSRWKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE  122 (193)
Q Consensus        71 ~vG~~~~~~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  122 (193)
                      ++|++++.|++||+|....                            .+|+|++|+.++.+.++++|+++++++++.+ .
T Consensus        78 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~  156 (351)
T cd08233          78 EVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-E  156 (351)
T ss_pred             EeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-c
Confidence            9999999999999998621                            1589999999999999999999999888765 6


Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          123 VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       123 ~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +..++|+++ ...+++++++++|+|+ |.+|++++|+++.+|+ +|+++++++++.++++++|++.++|++
T Consensus       157 ~~~ta~~~l-~~~~~~~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~  225 (351)
T cd08233         157 PLAVAWHAV-RRSGFKPGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPT  225 (351)
T ss_pred             HHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCC
Confidence            788999999 7788999999999986 9999999999999999 899999999999999999999999875

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1e-31  Score=216.79  Aligned_cols=179  Identities=17%  Similarity=0.186  Sum_probs=150.4

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC---CCCCCCCCCcceEEEEEEecCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP---PKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~---~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |+++++.++   .+++++.+.|. +++||+|||+++|+|++|++.+.|.+..   ...+|.++|||++|+|+++|.+  .
T Consensus         4 ~~~~~~~~~---~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~   77 (341)
T cd08237           4 QVYRLVRPK---FFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T   77 (341)
T ss_pred             cceEEeccc---eEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence            577777654   48999999985 9999999999999999999999886532   1246999999999999998764  6


Q ss_pred             CCCCCEEEEEc------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHh
Q 029425           79 WKVGDQVCALL------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMT  134 (193)
Q Consensus        79 ~~~G~~V~~~~------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~  134 (193)
                      |++||+|...+                        .+|+|+||+.++++.++++|+++++++++ +..++.++|+++...
T Consensus        78 ~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~~~  156 (341)
T cd08237          78 YKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAISRF  156 (341)
T ss_pred             cCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hhchHHHHHHHHHHH
Confidence            99999997642                        25889999999999999999999998776 556888899988543


Q ss_pred             --cCCCCCCeEEEEcCCchHHHHHHHHHHH-CC-CEEEEEeCCcchHHHHhhcCCcEE
Q 029425          135 --SHLSPGESFLVHGGSSGIGTFAIQMGKC-QG-VRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       135 --~~~~~~~~vli~ga~g~~G~~~i~~~~~-~g-~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                        ..+++|++++|.|+ |.+|++++|++++ +| ++|++++++++|++.++++|++..
T Consensus       157 ~~~~~~~g~~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~  213 (341)
T cd08237         157 EQIAHKDRNVIGVWGD-GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL  213 (341)
T ss_pred             hhcCCCCCCEEEEECC-CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee
Confidence              35688999999996 9999999999996 65 589999999999999887776543

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=3.5e-31  Score=213.27  Aligned_cols=190  Identities=29%  Similarity=0.467  Sum_probs=172.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++ +..+++++.+.|.+.+++++||+.++++|+.|...+.+.++.....|..+|+|++|+|+++|+++..++
T Consensus         1 m~a~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~   79 (341)
T cd08297           1 MKAAVVEEFG-EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLK   79 (341)
T ss_pred             CceEEeeccC-CCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCC
Confidence            9999999877 556899999999999999999999999999999888887654444577899999999999999999999


Q ss_pred             CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|+..+                            ..|++++|+.++.+.++++|+++++.+++.++..+.+||+++.
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~  159 (341)
T cd08297          80 VGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALK  159 (341)
T ss_pred             CCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHH
Confidence            999998642                            2588999999999999999999999999999999999999985


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      . .+++++++++|+|+.+.+|++++++++++|++|+++++++++.+.++++|++.+++++
T Consensus       160 ~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~  218 (341)
T cd08297         160 K-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFK  218 (341)
T ss_pred             h-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCC
Confidence            5 5889999999999988899999999999999999999999999999999999999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=2.3e-31  Score=214.16  Aligned_cols=189  Identities=25%  Similarity=0.390  Sum_probs=169.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||+++++++.+  +++.+.+.|++++++++||+.++++|++|+....+.++  ....+|.++|+|++|+|.++|+++..
T Consensus         1 ~ka~~~~~~~~~--~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~   78 (340)
T cd05284           1 MKAARLYEYGKP--LRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDG   78 (340)
T ss_pred             CeeeEeccCCCC--ceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCc
Confidence            899999987644  78888888999999999999999999999998888765  23456789999999999999999999


Q ss_pred             CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      |++||+|+++.                           .+|+|++|+.++++.++++|+++++++++.++..+.+||+++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l  158 (340)
T cd05284          79 LKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAV  158 (340)
T ss_pred             CcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence            99999998763                           258999999999999999999999999999999999999998


Q ss_pred             HHh-cCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          132 FMT-SHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       132 ~~~-~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ... ..+.++++++|+|+ +.+|++++++++.+| ++|+++++++++.+.++++|++++++++
T Consensus       159 ~~~~~~~~~~~~vlI~g~-~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~  220 (340)
T cd05284         159 KKALPYLDPGSTVVVIGV-GGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNAS  220 (340)
T ss_pred             HHhcccCCCCCEEEEEcC-cHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCC
Confidence            765 46888999999996 679999999999999 7999999999999999999999999875

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-31  Score=214.98  Aligned_cols=184  Identities=23%  Similarity=0.305  Sum_probs=158.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++.   +++.+.+.|.| .++|++||+.++++|++|+..+.....  ..+|.++|||++|+|+++|+++..|
T Consensus         1 Mka~~~~~~~~---~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~   75 (347)
T PRK10309          1 MKSVVNDTDGI---VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDL   75 (347)
T ss_pred             CceEEEeCCCc---eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCC
Confidence            89999998653   88999999987 589999999999999999875432111  1247899999999999999999999


Q ss_pred             CCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           80 KVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        80 ~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      ++||+|+.++                           .+|+|++|+.++++.++++|+++++++++.+. +..++|+++ 
T Consensus        76 ~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~-  153 (347)
T PRK10309         76 HPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF-  153 (347)
T ss_pred             CCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH-
Confidence            9999998752                           25899999999999999999999999888653 556678776 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ....++++++++|+|+ |.+|++++|+|+.+|++ |+++++++++.+.++++|+++++|++
T Consensus       154 ~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~  213 (347)
T PRK10309        154 HLAQGCEGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSR  213 (347)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCc
Confidence            5678899999999986 99999999999999996 78888899999999999999999875

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=6.3e-31  Score=213.95  Aligned_cols=187  Identities=27%  Similarity=0.371  Sum_probs=168.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+  +++++.+.|.+.++||+||+.++++|++|+....+.++  ...|.++|+|++|+|+++|+++.+++
T Consensus         3 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~--~~~p~v~G~e~~G~V~~vG~~v~~~~   78 (365)
T cd08278           3 TTAAVVREPGGP--FVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP--TPLPAVLGHEGAGVVEAVGSAVTGLK   78 (365)
T ss_pred             cEEeeeccCCCc--ceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC--CCCCcccccceeEEEEEeCCCcccCC
Confidence            899999987654  78889999999999999999999999999999888764  23578999999999999999999999


Q ss_pred             CCCEEEEEc-------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425           81 VGDQVCALL-------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG  111 (193)
Q Consensus        81 ~G~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~  111 (193)
                      +||+|+...                                                 ..|+|++|+.++++.++++|++
T Consensus        79 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~  158 (365)
T cd08278          79 PGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD  158 (365)
T ss_pred             CCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence            999998411                                                 2478999999999999999999


Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +++++++.++..+.+||.++.....++++++++|+|+ |.+|++++++++++|+ .++++++++++.+.++++|++.+++
T Consensus       159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~  237 (365)
T cd08278         159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGA-GAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN  237 (365)
T ss_pred             CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEec
Confidence            9999999999999999999878888999999999975 9999999999999999 5888888999999999999999998


Q ss_pred             CC
Q 029425          191 FG  192 (193)
Q Consensus       191 ~~  192 (193)
                      ++
T Consensus       238 ~~  239 (365)
T cd08278         238 PK  239 (365)
T ss_pred             CC
Confidence            75

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=8.9e-31  Score=209.76  Aligned_cols=189  Identities=25%  Similarity=0.373  Sum_probs=171.6

Q ss_pred             CEEEEEcCCCC--CCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGS--PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~--~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||+++.+++.  +..+++++.+.|.+.++|++||+.++++|+.|+....+.++....+|.++|+|++|+|..+|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~   81 (329)
T cd08250           2 FRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTD   81 (329)
T ss_pred             ceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCC
Confidence            89999999877  6778999999999999999999999999999999888776544456889999999999999999999


Q ss_pred             CCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHH
Q 029425           79 WKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQ  158 (193)
Q Consensus        79 ~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~  158 (193)
                      +++||+|+++. .|+|++|+.++.+.++++|++  +.+++.++.++.++|+++....+++++++++|+|++|.+|+++++
T Consensus        82 ~~~Gd~V~~~~-~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~  158 (329)
T cd08250          82 FKVGDAVATMS-FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQ  158 (329)
T ss_pred             CCCCCEEEEec-CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHH
Confidence            99999999884 588999999999999999997  346778899999999999877889999999999999999999999


Q ss_pred             HHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          159 MGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       159 ~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++++|++|+.+++++++.+.++++|++.+++++
T Consensus       159 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~  192 (329)
T cd08250         159 LAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYK  192 (329)
T ss_pred             HHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCC
Confidence            9999999999999999999999999998888754

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=5.5e-31  Score=211.01  Aligned_cols=181  Identities=16%  Similarity=0.227  Sum_probs=156.3

Q ss_pred             EEEEEcCC----CCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425            2 KAIVITQP----GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         2 ~a~~~~~~----~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |.|++.+.    ..|+.+++.+.+.|.|+++||+|||.++++|+.++.   +.+... ..|.++|.|++|+|.++|+   
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~-~~~~i~G~~~~g~v~~~~~---   74 (325)
T TIGR02825         2 KTWTLKKHFVGYPTDSDFELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLK-EGDTMMGQQVARVVESKNV---   74 (325)
T ss_pred             cEEEEecCCCCCCCCCceEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCC-CCCcEecceEEEEEEeCCC---
Confidence            45555542    345779999999999999999999999999997653   332221 2367999999999999774   


Q ss_pred             CCCCCCEEEEEccCceeeeEEeecCCceEEC----CCCCCHHhH-ccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchH
Q 029425           78 RWKVGDQVCALLGGGGYAEKVAVPAGQVLPV----PSGVSLKDA-AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI  152 (193)
Q Consensus        78 ~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~----p~~~~~~~a-a~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~  152 (193)
                      .|++||+|+++   ++|++|+.++.+.+.++    |++++++++ ++++++++|||+++.+..++++|++++|+|++|.+
T Consensus        75 ~~~~GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~v  151 (325)
T TIGR02825        75 ALPKGTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAV  151 (325)
T ss_pred             CCCCCCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHH
Confidence            59999999986   35999999998888777    899999987 67899999999999888999999999999999999


Q ss_pred             HHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          153 GTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       153 G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      |++++|+|+.+|++|+.+++++++.++++++|++.++|++
T Consensus       152 G~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~  191 (325)
T TIGR02825       152 GSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYK  191 (325)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEecc
Confidence            9999999999999999999999999999999999999986

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=5.4e-31  Score=210.95  Aligned_cols=191  Identities=31%  Similarity=0.443  Sum_probs=174.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++++++.+..+++++.+.|.+.++|++||+.++++|++|+....+.++.. .+|.++|+|++|+|+.+|+++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~-~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          2 AKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPP-SLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             ceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCC-CCCCccCcceEEEEEEeCCCCCCCC
Confidence            899999999988899999999999999999999999999999998887766532 2477899999999999999999999


Q ss_pred             CCCEEEEEc-cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425           81 VGDQVCALL-GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM  159 (193)
Q Consensus        81 ~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~  159 (193)
                      +||+|+... ..|+|++|+.++.+.++++|+++++++++.++..+.++|+++....+++++++++|+|++|.+|++++++
T Consensus        81 ~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~l  160 (327)
T PRK10754         81 VGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW  160 (327)
T ss_pred             CCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence            999998653 3588999999999999999999999999988899999999987778899999999999899999999999


Q ss_pred             HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++++|++++.++.++++.++++++|++.+++++
T Consensus       161 ak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~  193 (327)
T PRK10754        161 AKALGAKLIGTVGSAQKAQRAKKAGAWQVINYR  193 (327)
T ss_pred             HHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCC
Confidence            999999999999999999999999999888764

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=7.1e-31  Score=209.99  Aligned_cols=190  Identities=24%  Similarity=0.360  Sum_probs=164.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++.+..+.+++.+.|.+.++|++||+.++++|+.|.....+.......+|.++|||++|+|+++|  +..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            8999999988777788999999999999999999999999999866543222122357899999999999954  46799


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcC---CCCCCeEEEEcCCch
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSH---LSPGESFLVHGGSSG  151 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---~~~~~~vli~ga~g~  151 (193)
                      +||+|+...      .+|+|++|+.++++.++++|+++++++++.+++.+.++|+++....+   ..++++++|+|++|.
T Consensus        79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~  158 (326)
T cd08289          79 PGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGG  158 (326)
T ss_pred             CCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCch
Confidence            999998874      36999999999999999999999999999999999999988854332   345789999999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|++++++|+++|++|+++++++++.++++++|++.+++++
T Consensus       159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~  199 (326)
T cd08289         159 VGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPRE  199 (326)
T ss_pred             HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcch
Confidence            99999999999999999999999999999999999998865

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=100.00  E-value=1.1e-30  Score=208.74  Aligned_cols=190  Identities=24%  Similarity=0.383  Sum_probs=167.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.++.+++++.+.|.++++|++||+.++++|+.|.....+.+.....+|.++|+|++|+|++  +++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            89999999887777999999999999999999999999999999888776533233578899999999998  6677899


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH--hcCCC-CCCeEEEEcCCch
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM--TSHLS-PGESFLVHGGSSG  151 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~--~~~~~-~~~~vli~ga~g~  151 (193)
                      +||+|..+.      .+|+|++|+.++.+.++++|++++.++++.++..+++++.++..  ..... ++++++|+|++|.
T Consensus        79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~  158 (324)
T cd08288          79 PGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGG  158 (324)
T ss_pred             CCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcH
Confidence            999999863      25889999999999999999999999999999999999877641  23444 6789999999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|++++|+|+++|++++.++.++++.+.++++|++++++++
T Consensus       159 vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~  199 (324)
T cd08288         159 VGSVAVALLARLGYEVVASTGRPEEADYLRSLGASEIIDRA  199 (324)
T ss_pred             HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcc
Confidence            99999999999999999999999999999999999999875

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=7.7e-31  Score=211.11  Aligned_cols=185  Identities=25%  Similarity=0.330  Sum_probs=162.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++   .+++++.+.|.|+++|++||+.++++|++|+..+.+.++.. ++|.++|||++|+|+.+|+++..++
T Consensus         1 m~a~~~~~~~---~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~   76 (339)
T PRK10083          1 MKSIVIEKPN---SLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFA-KYPRVIGHEFFGVIDAVGEGVDAAR   76 (339)
T ss_pred             CeEEEEecCC---eeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcC-CCCcccccceEEEEEEECCCCccCC
Confidence            8999999765   48899999999999999999999999999999888876532 4588999999999999999999999


Q ss_pred             CCCEEE---------------------------EEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVC---------------------------ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~---------------------------~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|+                           ++..+|+|++|+.++.+.++++|+++++++++ +..++.++|+++ .
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~-~  154 (339)
T PRK10083         77 IGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT-G  154 (339)
T ss_pred             CCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH-H
Confidence            999998                           34346899999999999999999999988776 556778888544 6


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHH-CCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKC-QGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~-~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ..+++++++++|+| .|.+|++++|++++ +|++ ++++.+++++.+.++++|++.++|++
T Consensus       155 ~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~  214 (339)
T PRK10083        155 RTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNA  214 (339)
T ss_pred             hcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCc
Confidence            78899999999999 59999999999997 6995 66777889999999999999999875

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=1.9e-30  Score=207.13  Aligned_cols=191  Identities=32%  Similarity=0.483  Sum_probs=170.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||+++++++.+..+++.+.+.|.+.+++++||+.++++|+.|+....|..+.  ....|.++|+|++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            89999998877777888887777789999999999999999999888776432  2345788999999999999999999


Q ss_pred             CCCCCEEEEEcc--CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHH
Q 029425           79 WKVGDQVCALLG--GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFA  156 (193)
Q Consensus        79 ~~~G~~V~~~~~--~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~  156 (193)
                      +++||+|+++..  .|+|++|+.++.+.++++|+++++++++.++..++++| ++....+++++++++|+|++|.+|.++
T Consensus        81 ~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~  159 (324)
T cd08244          81 AWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLL  159 (324)
T ss_pred             CCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHH
Confidence            999999998852  68999999999999999999999999999999999995 555778899999999999999999999


Q ss_pred             HHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          157 IQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       157 i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++|+.+|++|+.+++++++.+.++++|++.+++++
T Consensus       160 ~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  195 (324)
T cd08244         160 VQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYT  195 (324)
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEecC
Confidence            999999999999999999999999999998888764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.98  E-value=1.2e-30  Score=214.23  Aligned_cols=192  Identities=29%  Similarity=0.477  Sum_probs=166.8

Q ss_pred             CEEEEEcC--CCCCC-ceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC---------CCCCCCCCCcceEEE
Q 029425            1 MKAIVITQ--PGSPE-VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP---------PKGASPYPGLECSGT   68 (193)
Q Consensus         1 m~a~~~~~--~~~~~-~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~---------~~~~p~~lg~e~~G~   68 (193)
                      |||++++.  ++.+. .+++++.+.|.++++||+||+.++++|++|+....+....         ....+.++|||++|+
T Consensus        13 ~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~   92 (393)
T cd08246          13 MYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGI   92 (393)
T ss_pred             hhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEE
Confidence            78888863  44443 5888999999999999999999999999999877664110         011235899999999


Q ss_pred             EEEecCCCCCCCCCCEEEEEcc----------------------------CceeeeEEeecCCceEECCCCCCHHhHccC
Q 029425           69 ILSVGKNVSRWKVGDQVCALLG----------------------------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAF  120 (193)
Q Consensus        69 V~~vG~~~~~~~~G~~V~~~~~----------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~  120 (193)
                      |+++|++++.+++||+|+.++.                            +|+|++|+.++...++++|+++++++++.+
T Consensus        93 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l  172 (393)
T cd08246          93 VWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAY  172 (393)
T ss_pred             EEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhh
Confidence            9999999999999999988742                            489999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHh--cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          121 PEVACTVWSTVFMT--SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       121 ~~~~~~a~~~l~~~--~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.++.+||+++...  .+++++++++|+|++|.+|++++++++++|++++++++++++.++++++|+++++|++
T Consensus       173 ~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~  246 (393)
T cd08246         173 MLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRR  246 (393)
T ss_pred             cccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEccc
Confidence            99999999998654  6789999999999999999999999999999999999999999999999999999863

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.98  E-value=1.8e-30  Score=210.14  Aligned_cols=186  Identities=22%  Similarity=0.349  Sum_probs=165.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++.   +++++.+.|.+.++|++||+.++++|++|+....+.+.. ...|.++|||++|+|+++|+++..++
T Consensus         1 mka~~~~~~~~---~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~   76 (351)
T cd08285           1 MKAFAMLGIGK---VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFK   76 (351)
T ss_pred             CceEEEccCCc---cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccC
Confidence            89999998764   678888888899999999999999999999888776543 34588999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------cCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHHH
Q 029425           81 VGDQVCALL------------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTVW  128 (193)
Q Consensus        81 ~G~~V~~~~------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a~  128 (193)
                      +||+|+..+                              .+|+|++|+.++.+  .++++|+++++++++.++.++.++|
T Consensus        77 ~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~  156 (351)
T cd08285          77 PGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGF  156 (351)
T ss_pred             CCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHH
Confidence            999998742                              25899999999874  8999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++ ....++++++++|+|+ |.+|++++|+++.+|+ .++++.+++++.+.++++|++++++++
T Consensus       157 ~~~-~~~~~~~g~~vlI~g~-g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  219 (351)
T cd08285         157 HGA-ELANIKLGDTVAVFGI-GPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK  219 (351)
T ss_pred             HHH-HccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCC
Confidence            996 6788999999999975 9999999999999999 588888889999999999999999875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.98  E-value=3.2e-30  Score=208.63  Aligned_cols=187  Identities=15%  Similarity=0.183  Sum_probs=157.0

Q ss_pred             EEEEEcCCC----CCCceEEEee---cCC-CCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCc--ceEEEEEE
Q 029425            2 KAIVITQPG----SPEVLQLQEV---EDP-QIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGL--ECSGTILS   71 (193)
Q Consensus         2 ~a~~~~~~~----~~~~~~~~~~---~~~-~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~--e~~G~V~~   71 (193)
                      |.|++.+..    .+++|++++.   +.| +++++|||||+.++++|+.|+..+.+.... ...|.++|+  +++|+|..
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~-~~~p~~~G~~~~~~G~v~~   88 (348)
T PLN03154         10 KQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS-YLPPFVPGQRIEGFGVSKV   88 (348)
T ss_pred             eEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC-CCCCcCCCCeeEeeEEEEE
Confidence            667775432    3467998885   444 358999999999999999998655432221 224788997  88999999


Q ss_pred             ecCCCCCCCCCCEEEEEccCceeeeEEeecCCc--eEE--CCCCCCHH-hHccCcchHHHHHHHHHHhcCCCCCCeEEEE
Q 029425           72 VGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQ--VLP--VPSGVSLK-DAAAFPEVACTVWSTVFMTSHLSPGESFLVH  146 (193)
Q Consensus        72 vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~--~~~--~p~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~  146 (193)
                      +|+++..|++||+|.++   ++|++|..++.+.  +++  +|++++++ ++++++++++|||+++....++++|++++|+
T Consensus        89 vg~~v~~~~~Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~  165 (348)
T PLN03154         89 VDSDDPNFKPGDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVS  165 (348)
T ss_pred             EecCCCCCCCCCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            99999999999999876   5699999888753  544  58999986 6888999999999999888899999999999


Q ss_pred             cCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCCcEEecCC
Q 029425          147 GGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNIRVFIGFG  192 (193)
Q Consensus       147 ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~~~~~~~~  192 (193)
                      |++|.+|++++|+|+++|++|+++++++++.++++ ++|++.++||+
T Consensus       166 GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~  212 (348)
T PLN03154        166 AASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYK  212 (348)
T ss_pred             cCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECC
Confidence            99999999999999999999999999999999997 79999999985

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.98  E-value=1.5e-30  Score=209.21  Aligned_cols=186  Identities=25%  Similarity=0.362  Sum_probs=166.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++++++.+.  .+++.+.|.+.++|++||+.++++|++|+..+.+.++.  ..|.++|+|++|+|+++|+++..|+
T Consensus         1 mka~~~~~~~~~~--~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~   76 (338)
T PRK09422          1 MKAAVVNKDHTGD--VVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLK   76 (338)
T ss_pred             CeEEEecCCCCCc--eEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCC
Confidence            9999999877642  27788999999999999999999999999888876543  2367899999999999999999999


Q ss_pred             CCCEEEEE-----------c-----------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCAL-----------L-----------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~-----------~-----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|+..           +                 .+|++++|+.++.+.++++|+++++.+++.++.+++++|+++ 
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-  155 (338)
T PRK09422         77 VGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-  155 (338)
T ss_pred             CCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-
Confidence            99999861           1                 258999999999999999999999999999999999999998 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~-~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ...+++++++++|+| .|.+|+++++++++ +|++|+++++++++.+.++++|++.+++++
T Consensus       156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~  215 (338)
T PRK09422        156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSK  215 (338)
T ss_pred             HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEeccc
Confidence            778899999999999 59999999999998 599999999999999999999999999874

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=2.3e-30  Score=208.87  Aligned_cols=188  Identities=31%  Similarity=0.513  Sum_probs=170.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++.+  +++.+.+.|.+.+++++||+.++++|+.|+....+..+. ..+|.++|+|++|+|+.+|++++.++
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~   77 (345)
T cd08260           1 MRAAVYEEFGEP--LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWR   77 (345)
T ss_pred             CeeEEEecCCCC--cEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCC
Confidence            999999988755  788899989999999999999999999999888887553 34578999999999999999999999


Q ss_pred             CCCEEEE---------------------------EccCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           81 VGDQVCA---------------------------LLGGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        81 ~G~~V~~---------------------------~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      +||+|++                           +.++|+|++|+.+++.  .++++|+++++++++.++.++.+||+++
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l  157 (345)
T cd08260          78 VGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRAL  157 (345)
T ss_pred             CCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHH
Confidence            9999986                           3336899999999974  8999999999999999999999999998


Q ss_pred             HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ....++.++++++|+| .|.+|++++++++.+|++|+++++++++.+.++++|++.+++++
T Consensus       158 ~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~  217 (345)
T cd08260         158 VHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNAS  217 (345)
T ss_pred             HHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccc
Confidence            7788899999999999 59999999999999999999999999999999999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.98  E-value=2.3e-30  Score=206.87  Aligned_cols=189  Identities=27%  Similarity=0.434  Sum_probs=168.1

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      ||++++..+.|+.+++++.+.|.+.+++++||+.++++|++|+..+.|.+......|.++|||++|+|+.  +++..|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            6899999888878999999999999999999999999999999988887643334588999999999988  55678999


Q ss_pred             CCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhc--CCCCCC-eEEEEcCCchH
Q 029425           82 GDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS--HLSPGE-SFLVHGGSSGI  152 (193)
Q Consensus        82 G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~--~~~~~~-~vli~ga~g~~  152 (193)
                      ||+|+++.      .+|++++|+.++.+.++++|+++++++++.++..+.++|.++....  .+.+++ +++|+|++|.+
T Consensus        79 Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~v  158 (323)
T TIGR02823        79 GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGV  158 (323)
T ss_pred             CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHH
Confidence            99999874      3689999999999999999999999999999999999998875443  378898 99999999999


Q ss_pred             HHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          153 GTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       153 G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      |++++++|+++|++++++++++++.+.++++|++.+++++
T Consensus       159 g~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~  198 (323)
T TIGR02823       159 GSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDRE  198 (323)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccc
Confidence            9999999999999999999999999999999999888764

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=2.8e-30  Score=204.68  Aligned_cols=183  Identities=31%  Similarity=0.444  Sum_probs=165.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++.+++ |..+++++.+.|.+.++|++||+.++++|+.|.......     ..|.++|+|++|+|+++|+++..|+
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~~   74 (305)
T cd08270           1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGPA   74 (305)
T ss_pred             CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCCC
Confidence            8999998876 777888899999999999999999999999999876521     1257899999999999999999999


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                      +||+|+++..+|+|++|+.++.+.++++|++++++++++++..+.++|+++...... ++++++|+|++|.+|.++++++
T Consensus        75 ~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a  153 (305)
T cd08270          75 VGARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLA  153 (305)
T ss_pred             CCCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHH
Confidence            999999986679999999999999999999999999999999999999998666655 5999999999999999999999


Q ss_pred             HHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          161 KCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +++|++++.+++++++.+.++++|++.+++
T Consensus       154 ~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~  183 (305)
T cd08270         154 ALAGAHVVAVVGSPARAEGLRELGAAEVVV  183 (305)
T ss_pred             HHcCCEEEEEeCCHHHHHHHHHcCCcEEEe
Confidence            999999999999999999999999876553

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=2.4e-30  Score=208.88  Aligned_cols=189  Identities=30%  Similarity=0.431  Sum_probs=164.8

Q ss_pred             CEEEEEcCCCCCCceEEEe-ecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC-------------------CCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQE-VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP-------------------PKGASPY   60 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~-~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~-------------------~~~~p~~   60 (193)
                      ||++++..++.+..+.+.+ .+.|.+.+++++||+.++++|++|+..+.|.++.                   ..++|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            8999999877666676654 3667789999999999999999999888775431                   2346889


Q ss_pred             CCcceEEEEEEecCCCCCCCCCCEEEEEc-------------------cCceeeeEEeecCCceEECCCCCCHHhHccCc
Q 029425           61 PGLECSGTILSVGKNVSRWKVGDQVCALL-------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFP  121 (193)
Q Consensus        61 lg~e~~G~V~~vG~~~~~~~~G~~V~~~~-------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~  121 (193)
                      +|||++|+|+++|+++.+|++||+|+..+                   .+|++++|+.++.+.++++|+++++.++++++
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~  160 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFP  160 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcc
Confidence            99999999999999999999999998742                   24899999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          122 EVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       122 ~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      .++.++|+++ ...+++++++++|+|++|.+|++++++++++|++++.+++++ +.+.++++|++.+++.
T Consensus       161 ~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~  228 (350)
T cd08274         161 CSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILR  228 (350)
T ss_pred             cHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeC
Confidence            9999999988 778899999999999999999999999999999999888665 8888888998766654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.98  E-value=9.7e-31  Score=210.82  Aligned_cols=188  Identities=34%  Similarity=0.514  Sum_probs=168.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++ +..+++++.+.|.++++||+||+.++++|++|+....+.+.  ...|.++|+|++|+|+.+|+++..|+
T Consensus         1 m~a~~~~~~~-~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~   77 (339)
T cd08249           1 QKAAVLTGPG-GGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFK   77 (339)
T ss_pred             CceEEeccCC-CCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCC
Confidence            8999999887 67799999999999999999999999999999887655431  12467899999999999999999999


Q ss_pred             CCCEEEEEcc--------CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCC----------CCCCe
Q 029425           81 VGDQVCALLG--------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL----------SPGES  142 (193)
Q Consensus        81 ~G~~V~~~~~--------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~----------~~~~~  142 (193)
                      +||+|.++..        +|+|++|+.++.+.++++|+++++++++.++.++.++|+++....++          +++++
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~  157 (339)
T cd08249          78 VGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKP  157 (339)
T ss_pred             CCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCE
Confidence            9999999853        48999999999999999999999999999999999999998666544          78999


Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++|+|++|.+|++++++++++|++++.++ ++++.+.++++|++++++++
T Consensus       158 vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~  206 (339)
T cd08249         158 VLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGADAVFDYH  206 (339)
T ss_pred             EEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCCEEEECC
Confidence            99999999999999999999999999888 66899999999999999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.98  E-value=3.3e-30  Score=204.50  Aligned_cols=192  Identities=55%  Similarity=0.930  Sum_probs=175.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++.+++.+..+++.+.+.|.+.+++++||+.++++|+.|+....+.++.....|.++|+|++|+|.++|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            89999998887777888888888889999999999999999999888776655455688999999999999999999999


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                      +||+|.++..+|+|++|+.++++.++++|+++++.+++.++.++.++|+++.....++++++++|+|+++.+|+++++++
T Consensus        81 ~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~  160 (323)
T cd05276          81 VGDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLA  160 (323)
T ss_pred             CCCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHH
Confidence            99999998767999999999999999999999999999999999999999877788999999999999999999999999


Q ss_pred             HHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +..|++++++.+++++.+.++++|++.+++++
T Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  192 (323)
T cd05276         161 KALGARVIATAGSEEKLEACRALGADVAINYR  192 (323)
T ss_pred             HHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCC
Confidence            99999999999999999999889988887754

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=3.1e-30  Score=208.52  Aligned_cols=189  Identities=29%  Similarity=0.399  Sum_probs=168.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC-----------CCCCCCCCCcceEEEE
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP-----------PKGASPYPGLECSGTI   69 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~-----------~~~~p~~lg~e~~G~V   69 (193)
                      |||+++..++.+  +++++.+.|+++++|++||+.++++|++|+..+.+.++.           ....|.++|+|++|+|
T Consensus         1 ~~a~~~~~~~~~--~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V   78 (350)
T cd08240           1 MKAAAVVEPGKP--LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEV   78 (350)
T ss_pred             CeeEEeccCCCC--ceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEE
Confidence            899999887655  788899999999999999999999999999888775432           2234678999999999


Q ss_pred             EEecCCCCCCCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcc
Q 029425           70 LSVGKNVSRWKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE  122 (193)
Q Consensus        70 ~~vG~~~~~~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  122 (193)
                      +++|+++..+++||+|++++                           ..|++++|+.++.+.++++|+++++.+++.+..
T Consensus        79 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~  158 (350)
T cd08240          79 VAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLAC  158 (350)
T ss_pred             EeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhc
Confidence            99999999999999998762                           358899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          123 VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       123 ~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      .+.+||+++.....++++++++|+| +|.+|++++|+|+++|+ +|+++..++++.+.++++|++.+++++
T Consensus       159 ~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~  228 (350)
T cd08240         159 SGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGS  228 (350)
T ss_pred             hhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCC
Confidence            9999999997777777899999997 49999999999999999 788998899999999999999888765

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.97  E-value=5.7e-30  Score=203.45  Aligned_cols=192  Identities=35%  Similarity=0.537  Sum_probs=175.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++..++.+..+++.+.+.|.+.+++++|++.++++|+.|+....+.+......|.++|||++|+|.++|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            89999998776667888999999999999999999999999999888776554445688999999999999999999999


Q ss_pred             CCCEEEEEc-----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425           81 VGDQVCALL-----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF  155 (193)
Q Consensus        81 ~G~~V~~~~-----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~  155 (193)
                      +||+|.++.     ..|++++|+.++++.++++|+++++.+++.++.++.++|+++....+++++++++|+|+++.+|++
T Consensus        81 ~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~  160 (325)
T cd08253          81 VGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHA  160 (325)
T ss_pred             CCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHH
Confidence            999999885     258899999999999999999999999999999999999999887899999999999999999999


Q ss_pred             HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++++++.+|++|+++++++++.+.++++|++.++++.
T Consensus       161 ~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  197 (325)
T cd08253         161 AVQLARWAGARVIATASSAEGAELVRQAGADAVFNYR  197 (325)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence            9999999999999999999999999989998888754

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=6e-30  Score=205.85  Aligned_cols=184  Identities=33%  Similarity=0.475  Sum_probs=164.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++   .+++.+.+.|.+.++|++||+.++++|+.|+....+.++.. .+|.++|+|++|+|+++|++++.|+
T Consensus         1 ~~a~~~~~~~---~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~   76 (337)
T cd08261           1 MKALVCEKPG---RLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGLK   76 (337)
T ss_pred             CeEEEEeCCC---ceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEeCCCCCCCC
Confidence            8999998764   48899999999999999999999999999998887765443 3477899999999999999999999


Q ss_pred             CCCEEEE---------------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCA---------------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~---------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|++                           +...|+|++|+.++++ ++++|+++++++++.+ ..+.++++++ .
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~  153 (337)
T cd08261          77 VGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-R  153 (337)
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-H
Confidence            9999987                           2236899999999999 9999999999998866 6778888888 7


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ..++++++++||+|+ |.+|.+++|+|+.+|++|+++++++++.++++++|++++++++
T Consensus       154 ~~~l~~g~~vLI~g~-g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~  211 (337)
T cd08261         154 RAGVTAGDTVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVG  211 (337)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCc
Confidence            788999999999974 9999999999999999999999999999999999999999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=1.7e-30  Score=206.97  Aligned_cols=173  Identities=21%  Similarity=0.274  Sum_probs=142.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCC-hhhhhhhcCCCCCC--CCCCCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALN-RADTLQRKGSYPPP--KGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~-~~d~~~~~~~~~~~--~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      ||++++..++   .+++++.+.|+|+++||+|||+++++| ++|+..+.|.++..  ..+|.++|||++|+|+++|+++ 
T Consensus         2 ~ka~~~~~~~---~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-   77 (308)
T TIGR01202         2 TQAIVLSGPN---QIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-   77 (308)
T ss_pred             ceEEEEeCCC---eEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-
Confidence            7899998644   499999999999999999999999996 69998888876432  2469999999999999999998 


Q ss_pred             CCCCCCEEEEEc---------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcC
Q 029425           78 RWKVGDQVCALL---------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGG  148 (193)
Q Consensus        78 ~~~~G~~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga  148 (193)
                      .|++||+|+..+         .+|+|++|+.++++.++++|++++++. +.+ .+..++|+++.. . ..++++++|+|+
T Consensus        78 ~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a~~~~~~-~-~~~~~~vlV~G~  153 (308)
T TIGR01202        78 GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATARHAVAG-A-EVKVLPDLIVGH  153 (308)
T ss_pred             CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHHHHHHHh-c-ccCCCcEEEECC
Confidence            699999998642         159999999999999999999999764 444 457899999854 3 346889999986


Q ss_pred             CchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhh
Q 029425          149 SSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQP  182 (193)
Q Consensus       149 ~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~  182 (193)
                       |.+|++++|+|+.+|++ |+++..++++++.+++
T Consensus       154 -G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~  187 (308)
T TIGR01202       154 -GTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG  187 (308)
T ss_pred             -CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence             99999999999999997 4455556666655543

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.97  E-value=6.5e-30  Score=205.22  Aligned_cols=191  Identities=32%  Similarity=0.436  Sum_probs=172.0

Q ss_pred             CEEEEEcCCCCCC---ceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQPGSPE---VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~~~~~---~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |||+++++++++.   .+.+++.+.|.+.+++++||+.++++|+.|+....+..+. ...|.++|+|++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~   79 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVT   79 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCC
Confidence            8999999988765   4777788888889999999999999999999887776542 23467899999999999999999


Q ss_pred             CCCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCC-----CCeEEEEcCC
Q 029425           78 RWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP-----GESFLVHGGS  149 (193)
Q Consensus        78 ~~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~~~vli~ga~  149 (193)
                      .|++||+|..+.   .+|+|++|+.++.+.++++|+++++++++.++..+.++|+++.....+++     +++++|+|++
T Consensus        80 ~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~  159 (336)
T cd08252          80 LFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGA  159 (336)
T ss_pred             CCCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCC
Confidence            999999999864   36899999999999999999999999999999999999999877788877     9999999988


Q ss_pred             chHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          150 SGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       150 g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      |.+|++++++++.+| ++|+++++++++.++++++|++.+++++
T Consensus       160 g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~  203 (336)
T cd08252         160 GGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHH  203 (336)
T ss_pred             chHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCC
Confidence            999999999999999 9999999999999999999999998864

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=8.6e-30  Score=203.85  Aligned_cols=188  Identities=33%  Similarity=0.468  Sum_probs=169.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++..++  ..+.+.+.+.|.+.+++++|++.++++|++|+....+.++. ...|.++|+|++|+|+.+|+++..++
T Consensus         1 m~a~~~~~~~--~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~   77 (332)
T cd08259           1 MKAAILHKPN--KPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFK   77 (332)
T ss_pred             CeEEEEecCC--CceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCC
Confidence            8999998743  34888899999999999999999999999999988886653 33578999999999999999999999


Q ss_pred             CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|+++.                           ..|+|++|+.++.+.++++|+++++++++.++.++.++|+++..
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~  157 (332)
T cd08259          78 PGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR  157 (332)
T ss_pred             CCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH
Confidence            999999874                           15899999999999999999999999999999999999999966


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                       .+++++++++|+|++|.+|++++++++.+|++++.+++++++.+.++++|++.+++++
T Consensus       158 -~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  215 (332)
T cd08259         158 -AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGS  215 (332)
T ss_pred             -hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecH
Confidence             8899999999999999999999999999999999999999999999889988877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.97  E-value=6.6e-30  Score=210.17  Aligned_cols=192  Identities=27%  Similarity=0.448  Sum_probs=167.4

Q ss_pred             CEEEEEcC--CCCC-CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC---------CCCCC-CCCCcceEE
Q 029425            1 MKAIVITQ--PGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP---------PKGAS-PYPGLECSG   67 (193)
Q Consensus         1 m~a~~~~~--~~~~-~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~---------~~~~p-~~lg~e~~G   67 (193)
                      |||+++..  +++| ..+++.+.+.|.+.+++++||+.++++|.+|.....+....         ....| .++|||++|
T Consensus         8 ~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~G   87 (398)
T TIGR01751         8 MYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDASG   87 (398)
T ss_pred             hhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceEE
Confidence            89999965  6665 56899999999999999999999999999998766553210         00123 379999999


Q ss_pred             EEEEecCCCCCCCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHcc
Q 029425           68 TILSVGKNVSRWKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAA  119 (193)
Q Consensus        68 ~V~~vG~~~~~~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~  119 (193)
                      +|+++|+++..+++||+|+..+                            .+|+|++|+.++.+.++++|+++++++++.
T Consensus        88 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~  167 (398)
T TIGR01751        88 VVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAAC  167 (398)
T ss_pred             EEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhh
Confidence            9999999999999999998764                            248999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHH--hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          120 FPEVACTVWSTVFM--TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       120 ~~~~~~~a~~~l~~--~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +...+.++|+++..  ..+++++++++|+|++|.+|++++++++++|++++++++++++.+.++++|++.++|++
T Consensus       168 ~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~  242 (398)
T TIGR01751       168 PGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRN  242 (398)
T ss_pred             ccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCC
Confidence            99999999999854  46789999999999999999999999999999999999999999999999999999874

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=8.9e-30  Score=202.54  Aligned_cols=187  Identities=35%  Similarity=0.571  Sum_probs=168.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++...+.+..+++.+.+.|.+.++|++||+.++++|+.|+....+..+. ...|.++|+|++|+|+++|+  ..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~   77 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFT   77 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCC
Confidence            89999998777667888888888889999999999999999999888776542 23478899999999999995  5799


Q ss_pred             CCCEEEEEcc------CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHH
Q 029425           81 VGDQVCALLG------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGT  154 (193)
Q Consensus        81 ~G~~V~~~~~------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~  154 (193)
                      +||+|+++..      +|+|++|+.++...++++|+++++++++.++.++.++|+++.....++++++++|+|++|.+|+
T Consensus        78 ~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~  157 (320)
T cd08243          78 PGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGL  157 (320)
T ss_pred             CCCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHH
Confidence            9999998742      4889999999999999999999999999999999999999988888999999999999999999


Q ss_pred             HHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          155 FAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       155 ~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +++++|+++|++|+.++.++++.+.++++|++++++
T Consensus       158 ~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~  193 (320)
T cd08243         158 AALKLAKALGATVTATTRSPERAALLKELGADEVVI  193 (320)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEe
Confidence            999999999999999999999999999999988874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=5.4e-30  Score=206.60  Aligned_cols=186  Identities=28%  Similarity=0.421  Sum_probs=166.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      ||++++.+++.   +++.+.+.|.+ .+++++||+.++++|++|+..+.+.++. .++|.++|+|++|+|+++|+++.++
T Consensus         1 ~ka~~~~~~~~---~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~   76 (347)
T cd05278           1 MKALVYLGPGK---IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRL   76 (347)
T ss_pred             CceEEEecCCc---eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCcccc
Confidence            89999997654   78889998989 9999999999999999999988887654 3458899999999999999999999


Q ss_pred             CCCCEEEEE------------------------------ccCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHH
Q 029425           80 KVGDQVCAL------------------------------LGGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTV  127 (193)
Q Consensus        80 ~~G~~V~~~------------------------------~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a  127 (193)
                      ++||+|...                              ..+|+|++|+.++++  .++++|+++++++++.++.++++|
T Consensus        77 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta  156 (347)
T cd05278          77 KPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTG  156 (347)
T ss_pred             CCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhhe
Confidence            999999862                              135899999999987  899999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       128 ~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      |+++ ...+++++++++|.|+ |.+|++++|+|+.+|+ +++.+.+++++.+.++++|++.+++++
T Consensus       157 ~~~~-~~~~~~~~~~VlI~g~-g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  220 (347)
T cd05278         157 FHGA-ELAGIKPGSTVAVIGA-GPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK  220 (347)
T ss_pred             eehh-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCC
Confidence            9998 6788999999999875 9999999999999997 888888888899999999999998875

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=4.7e-30  Score=211.78  Aligned_cols=189  Identities=24%  Similarity=0.320  Sum_probs=153.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhh-cCCCC-C----CCCCCCCCCcceEEEEEEecC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQR-KGSYP-P----PKGASPYPGLECSGTILSVGK   74 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~-~~~~~-~----~~~~p~~lg~e~~G~V~~vG~   74 (193)
                      ||++++..++   .+++++.+.|.++++||+|||.++++|++|++.+ .+... .    ...+|.++|||++|+|+++|+
T Consensus         3 ~~a~~~~~~~---~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           3 TKAWRMYGKG---DLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             cEEEEEEcCC---ceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            6788888765   3899999999999999999999999999999876 44321 1    013588999999999999999


Q ss_pred             CCC-CCCCCCEEEEEc----------------cCceeeeEEeecCC----ceEECCCCCCHHhHccCcchH--HHHHHHH
Q 029425           75 NVS-RWKVGDQVCALL----------------GGGGYAEKVAVPAG----QVLPVPSGVSLKDAAAFPEVA--CTVWSTV  131 (193)
Q Consensus        75 ~~~-~~~~G~~V~~~~----------------~~g~~~~~~~~~~~----~~~~~p~~~~~~~aa~~~~~~--~~a~~~l  131 (193)
                      ++. .|++||+|+..+                .+|+|++|+.++++    .++++|+++++++++.+....  .+++.++
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~  159 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTAN  159 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhhhc
Confidence            997 699999998752                25899999999987    589999999999887542211  2233332


Q ss_pred             --------HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCcchHHHHhhc--------CCc-EEecC
Q 029425          132 --------FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV---RVFVTAGLATRFILCQPF--------NIR-VFIGF  191 (193)
Q Consensus       132 --------~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~---~v~~~~~~~~~~~~~~~~--------G~~-~~~~~  191 (193)
                              ....++++|++++|+|++|.+|++++|+|+++|+   +|++++++++|++.++++        |++ .++|+
T Consensus       160 ~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~  239 (410)
T cd08238         160 YHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNP  239 (410)
T ss_pred             ccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECC
Confidence                    2456789999999999889999999999999864   799999999999999997        776 57776


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus       240 ~  240 (410)
T cd08238         240 A  240 (410)
T ss_pred             C
Confidence            3

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.5e-29  Score=202.65  Aligned_cols=191  Identities=32%  Similarity=0.550  Sum_probs=172.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++..+.+..+++++.+.|.++++|++||+.++++|++|+....+.++.....|.++|||++|+|+++|+++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            99999998766667888888888899999999999999999999988877654444678999999999999999999999


Q ss_pred             CCCEEEEEcc---------------------CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCC
Q 029425           81 VGDQVCALLG---------------------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP  139 (193)
Q Consensus        81 ~G~~V~~~~~---------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~  139 (193)
                      +||+|.....                     +|+|++|+.++.+.++++|+++++.+++.++.++.++|+++.....+++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  160 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKP  160 (336)
T ss_pred             CCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCC
Confidence            9999998741                     5889999999999999999999999999999999999999988889999


Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++++|+| +|.+|++++++++++|++|++++.++++.+.++++|++.+++++
T Consensus       161 g~~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~  212 (336)
T cd08276         161 GDTVLVQG-TGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYR  212 (336)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCC
Confidence            99999996 59999999999999999999999999999999999999988764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=1.3e-29  Score=203.12  Aligned_cols=189  Identities=30%  Similarity=0.414  Sum_probs=169.6

Q ss_pred             CEEEEEcCCCCC--CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSP--EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~--~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      ||++++.+.+.+  ..+++++.+.|.+.++||+||+.++++|++|+....|.++. ...|.++|+|++|+|+++|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   79 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTR   79 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCC
Confidence            899999988753  35778888888899999999999999999999988887654 335789999999999999999999


Q ss_pred             CCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHH
Q 029425           79 WKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST  130 (193)
Q Consensus        79 ~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~  130 (193)
                      +++||+|...+                            .+|+|++|+.++.+.++++|+++++.+++.+++++.++|++
T Consensus        80 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~  159 (329)
T cd08298          80 FSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA  159 (329)
T ss_pred             CcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHH
Confidence            99999997621                            25889999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      + ...+++++++++|+|+ |.+|+++++++++.|++|+.+++++++.+.++++|++.+++++
T Consensus       160 ~-~~~~~~~~~~vlV~g~-g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  219 (329)
T cd08298         160 L-KLAGLKPGQRLGLYGF-GASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSD  219 (329)
T ss_pred             H-HhhCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccC
Confidence            9 8899999999999974 9999999999999999999999999999999999998888764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=8.8e-30  Score=207.29  Aligned_cols=187  Identities=29%  Similarity=0.461  Sum_probs=168.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCC--
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSR--   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~--   78 (193)
                      |||+++++++.+  +.+++.+.|.++++||+||+.++++|+.|+....+.++.  .+|.++|+|++|+|+.+|+++.+  
T Consensus         1 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~   76 (367)
T cd08263           1 MKAAVLKGPNPP--LTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPY   76 (367)
T ss_pred             CeeEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCC
Confidence            899999988643  778889999999999999999999999999988876643  45789999999999999999887  


Q ss_pred             -CCCCCEEEEE-------------------------------------------------ccCceeeeEEeecCCceEEC
Q 029425           79 -WKVGDQVCAL-------------------------------------------------LGGGGYAEKVAVPAGQVLPV  108 (193)
Q Consensus        79 -~~~G~~V~~~-------------------------------------------------~~~g~~~~~~~~~~~~~~~~  108 (193)
                       |++||+|++.                                                 ...|++++|+.++.+.++++
T Consensus        77 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (367)
T cd08263          77 GLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPL  156 (367)
T ss_pred             cCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEEC
Confidence             9999999873                                                 12588999999999999999


Q ss_pred             CCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcE
Q 029425          109 PSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       109 p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      |+++++.+++.++.++++||+++.....++++++++|+| +|.+|++++++|+.+|++ +++++.++++.+.++++|++.
T Consensus       157 P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~  235 (367)
T cd08263         157 PESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATH  235 (367)
T ss_pred             CCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCce
Confidence            999999999999999999999998878889999999996 599999999999999997 888888999999999999999


Q ss_pred             EecCC
Q 029425          188 FIGFG  192 (193)
Q Consensus       188 ~~~~~  192 (193)
                      +++++
T Consensus       236 v~~~~  240 (367)
T cd08263         236 TVNAA  240 (367)
T ss_pred             EecCC
Confidence            99875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=9.4e-30  Score=206.88  Aligned_cols=187  Identities=28%  Similarity=0.402  Sum_probs=169.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++.+  +++++.+.|.+++++++|++.++++|+.|+..+.+.++.  .+|.++|+|++|+|+++|++++.|+
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~   76 (363)
T cd08279           1 MRAAVLHEVGKP--LEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVK   76 (363)
T ss_pred             CeEEEEecCCCC--ceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccC
Confidence            899999988755  788899999999999999999999999999988887652  3577999999999999999999999


Q ss_pred             CCCEEEEE-----------------------------------------------ccCceeeeEEeecCCceEECCCCCC
Q 029425           81 VGDQVCAL-----------------------------------------------LGGGGYAEKVAVPAGQVLPVPSGVS  113 (193)
Q Consensus        81 ~G~~V~~~-----------------------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~  113 (193)
                      +||+|++.                                               ...|+|++|+.++++.++++|++++
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  156 (363)
T cd08279          77 PGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIP  156 (363)
T ss_pred             CCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCC
Confidence            99999883                                               1358899999999999999999999


Q ss_pred             HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       114 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++++.++....++|.++....+++++++++|+|+ |.+|++++++++++|++ |+.+++++++.+.++++|++++++++
T Consensus       157 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~-g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~  235 (363)
T cd08279         157 LDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGC-GGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNAS  235 (363)
T ss_pred             hHHeehhcchhHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCC
Confidence            99999999999999999878889999999999965 99999999999999996 99999999999999999999988764

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.97  E-value=1e-29  Score=208.32  Aligned_cols=186  Identities=28%  Similarity=0.397  Sum_probs=165.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||++++.+   +.+++++.+.|.| .+++|+||+.++++|++|+....|.++. .++|.++|+|++|+|+++|+++.++
T Consensus         1 m~a~~~~~~---~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~   76 (386)
T cd08283           1 MKALVWHGK---GDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRNL   76 (386)
T ss_pred             CeeEEEecC---CCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCCC
Confidence            999999864   4488999998988 4999999999999999999999887754 3468899999999999999999999


Q ss_pred             CCCCEEEEEc-----------------------------------------------cCceeeeEEeecCC--ceEECCC
Q 029425           80 KVGDQVCALL-----------------------------------------------GGGGYAEKVAVPAG--QVLPVPS  110 (193)
Q Consensus        80 ~~G~~V~~~~-----------------------------------------------~~g~~~~~~~~~~~--~~~~~p~  110 (193)
                      ++||+|+..+                                               .+|+|++|+.++.+  .++++|+
T Consensus        77 ~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~  156 (386)
T cd08283          77 KVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPD  156 (386)
T ss_pred             CCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCC
Confidence            9999998743                                               14889999999987  8999999


Q ss_pred             CCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEe
Q 029425          111 GVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       111 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      ++++++++.++..++++|+++ ....++++++++|+|+ |.+|++++++|+++|+ +++.+++++++.+.+++++...++
T Consensus       157 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~-G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi  234 (386)
T cd08283         157 DLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETI  234 (386)
T ss_pred             CCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEE
Confidence            999999999999999999999 7788999999999975 9999999999999998 599999999999999998444677


Q ss_pred             cCC
Q 029425          190 GFG  192 (193)
Q Consensus       190 ~~~  192 (193)
                      +++
T Consensus       235 ~~~  237 (386)
T cd08283         235 NFE  237 (386)
T ss_pred             cCC
Confidence            654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.97  E-value=7.4e-30  Score=207.68  Aligned_cols=186  Identities=26%  Similarity=0.325  Sum_probs=165.7

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      ||+++.+.+.+  +++++.+.|.+.+++++||+.++++|+.|++.+.+.+..  ..|.++|||++|+|+++|+++..+++
T Consensus         2 ~a~~~~~~~~~--~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~   77 (365)
T cd05279           2 KAAVLWEKGKP--LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKP   77 (365)
T ss_pred             ceeEEecCCCC--cEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCC
Confidence            67888876654  888999999999999999999999999999988886542  35789999999999999999999999


Q ss_pred             CCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCCC
Q 029425           82 GDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGVS  113 (193)
Q Consensus        82 G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~  113 (193)
                      ||+|++..                                                ..|+|++|+.++++.++++|++++
T Consensus        78 Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~  157 (365)
T cd05279          78 GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP  157 (365)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCC
Confidence            99998752                                                136899999999999999999999


Q ss_pred             HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       114 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++++.+..++.++|+++....+++++++++|+|+ |.+|++++++++++|++ ++++.+++++.+.++++|++++++++
T Consensus       158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  236 (365)
T cd05279         158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPR  236 (365)
T ss_pred             HHHhhHhccchhHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccc
Confidence            99999898899999999878889999999999975 99999999999999996 67777799999999999999998865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.97  E-value=8.3e-30  Score=203.33  Aligned_cols=188  Identities=28%  Similarity=0.407  Sum_probs=169.3

Q ss_pred             EEcCCCCCC--ceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCC
Q 029425            5 VITQPGSPE--VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVG   82 (193)
Q Consensus         5 ~~~~~~~~~--~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G   82 (193)
                      ++++++.+.  .+++++.+.|.+.+++++||+.++++|+.|...+.+.+......|.++|+|++|+|+.+|+++..+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~G   81 (323)
T cd05282           2 VYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVG   81 (323)
T ss_pred             eeCcCCCCccceEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence            345556655  688888888889999999999999999999988877665434467899999999999999999999999


Q ss_pred             CEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHH
Q 029425           83 DQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC  162 (193)
Q Consensus        83 ~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~  162 (193)
                      |+|+++..+|+|++|+.++...++++|+++++.+++.++..++++|+++.....+.++++++|+|++|.+|++++++|++
T Consensus        82 d~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~  161 (323)
T cd05282          82 QRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKL  161 (323)
T ss_pred             CEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHH
Confidence            99999864689999999999999999999999999989999999999998888889999999999999999999999999


Q ss_pred             CCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          163 QGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       163 ~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|++++++++++++.+.++++|++.+++++
T Consensus       162 ~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  191 (323)
T cd05282         162 LGFKTINVVRRDEQVEELKALGADEVIDSS  191 (323)
T ss_pred             CCCeEEEEecChHHHHHHHhcCCCEEeccc
Confidence            999999999999999999999999999875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=1.4e-29  Score=204.23  Aligned_cols=187  Identities=22%  Similarity=0.358  Sum_probs=166.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++.   +++++.+.|+| .++||+||+.++++|+.|+..+.|.++. ..+|.++|||++|+|+++|+++..+
T Consensus         1 m~a~~~~~~~~---~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~   76 (345)
T cd08286           1 MKALVYHGPGK---ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEVGSAVTNF   76 (345)
T ss_pred             CceEEEecCCc---eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEeccCcccc
Confidence            89999987653   88899998886 8999999999999999999998887653 2347899999999999999999999


Q ss_pred             CCCCEEEEEc----------------------------cCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHHHH
Q 029425           80 KVGDQVCALL----------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTVWS  129 (193)
Q Consensus        80 ~~G~~V~~~~----------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~  129 (193)
                      ++||+|+..+                            .+|+|++|+.++.+  .++++|++++..+++.++..++++|+
T Consensus        77 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  156 (345)
T cd08286          77 KVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYE  156 (345)
T ss_pred             CCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHH
Confidence            9999998753                            13889999999987  89999999999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++....+++++++++|+|+ |.+|.+++|+++.+| .+++++.+++++...++++|++.+++++
T Consensus       157 ~~~~~~~~~~g~~vlI~g~-g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  219 (345)
T cd08286         157 CGVLNGKVKPGDTVAIVGA-GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSA  219 (345)
T ss_pred             HHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccc
Confidence            8777788999999999886 999999999999999 6899988888899999999999999875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.97  E-value=1.4e-29  Score=203.19  Aligned_cols=190  Identities=32%  Similarity=0.456  Sum_probs=172.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++..++.+. +.+.+.+.|.+.+++|+|++.++++|+.|.....+.++.....|.++|+|++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~   79 (338)
T cd08254           1 MKAWRFHKGSKGL-LVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFK   79 (338)
T ss_pred             CeeEEEecCCCCc-eEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCC
Confidence            8999999988876 788888889999999999999999999999988887764455678999999999999999999999


Q ss_pred             CCCEEEE------------------Ec---------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCA------------------LL---------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~------------------~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|+.                  ++         .+|+|++|+.++.+.++++|+++++.+++.++.++.+||+++..
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~  159 (338)
T cd08254          80 VGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVR  159 (338)
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHh
Confidence            9999986                  21         25889999999999999999999999999999999999999988


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ..+++++++++|.| +|.+|++++++|+.+|++|++++.++++.+.++++|++.+++++
T Consensus       160 ~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~  217 (338)
T cd08254         160 AGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSL  217 (338)
T ss_pred             ccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCC
Confidence            88899999999986 49999999999999999999999999999999999998888764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.97  E-value=2.3e-29  Score=202.72  Aligned_cols=185  Identities=32%  Similarity=0.451  Sum_probs=164.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++++++.   +.+++.+.|++.+++|+||+.++++|+.|+..+.+.+. +...|.++|+|++|+|+++|+++..++
T Consensus         1 ~~~~~~~~~~~---~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~G~~v~~~~   76 (343)
T cd08235           1 MKAAVLHGPND---VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEVGDGVTGFK   76 (343)
T ss_pred             CeEEEEecCCc---eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEeeCCCCCCCC
Confidence            89999998763   88889999999999999999999999999998887664 233477899999999999999999999


Q ss_pred             CCCEEEEEc---------------------------cCceeeeEEeecCCc-----eEECCCCCCHHhHccCcchHHHHH
Q 029425           81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQ-----VLPVPSGVSLKDAAAFPEVACTVW  128 (193)
Q Consensus        81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~-----~~~~p~~~~~~~aa~~~~~~~~a~  128 (193)
                      +||+|+++.                           .+|+|++|+.++++.     ++++|+++++.+++.+ +++.+||
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~  155 (343)
T cd08235          77 VGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCI  155 (343)
T ss_pred             CCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHH
Confidence            999999862                           358999999999988     9999999999998765 7889999


Q ss_pred             HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++. ..+++++++++|+| +|.+|++++++|+.+|++ ++++++++++.+.++++|++++++++
T Consensus       156 ~~l~-~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~  218 (343)
T cd08235         156 NAQR-KAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAA  218 (343)
T ss_pred             HHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCC
Confidence            9985 45899999999997 599999999999999998 88899999999999889999988875

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.7e-29  Score=203.48  Aligned_cols=185  Identities=30%  Similarity=0.395  Sum_probs=161.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC----------CCCCCCCCCCcceEEEEE
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP----------PPKGASPYPGLECSGTIL   70 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~----------~~~~~p~~lg~e~~G~V~   70 (193)
                      |||+++..+    .+++++.+.|++.+++|+||+.++++|+.|+....|...          ....+|.++|+|++|+|+
T Consensus         1 m~a~~~~~~----~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~   76 (341)
T cd08262           1 MRAAVFRDG----PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVV   76 (341)
T ss_pred             CceEEEeCC----ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEE
Confidence            899999865    488999999999999999999999999999988877321          112347889999999999


Q ss_pred             EecCCCCC-CCCCCEEEEEc-----------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           71 SVGKNVSR-WKVGDQVCALL-----------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        71 ~vG~~~~~-~~~G~~V~~~~-----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      ++|+++.. |++||+|++++                 .+|+|++|+.++.+.++++|+++++++++ ++.+++++|+++ 
T Consensus        77 ~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~-  154 (341)
T cd08262          77 DYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV-  154 (341)
T ss_pred             EeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-
Confidence            99999987 99999999872                 35899999999999999999999988876 667888999986 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ...+++++++++|+|+ |.+|.+++|+++.+|++ ++++.+++++.++++++|++++++++
T Consensus       155 ~~~~~~~g~~VlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~  214 (341)
T cd08262         155 RRARLTPGEVALVIGC-GPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPA  214 (341)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCC
Confidence            7889999999999985 99999999999999996 66666788899999999999999865

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.97  E-value=1.9e-29  Score=203.63  Aligned_cols=191  Identities=35%  Similarity=0.537  Sum_probs=166.6

Q ss_pred             CEEEEEcCCCCCC-ceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCC--------C------CCCCCCCCCcc
Q 029425            1 MKAIVITQPGSPE-VLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYP--------P------PKGASPYPGLE   64 (193)
Q Consensus         1 m~a~~~~~~~~~~-~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~--------~------~~~~p~~lg~e   64 (193)
                      |||+++++++.+. .+++++.+.|.| .++||+||+.++++|++|+....+...        .      ....|.++|+|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            8999999887753 477888888988 499999999999999999988877421        0      22457899999


Q ss_pred             eEEEEEEecCCCCCCCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCC--
Q 029425           65 CSGTILSVGKNVSRWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP--  139 (193)
Q Consensus        65 ~~G~V~~vG~~~~~~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~--  139 (193)
                      ++|+|..+|+++.++++||+|+++.   ..|+|++|+.++++.++++|+++++++++.++..+.++|+++.....+.+  
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~  160 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKN  160 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCcc
Confidence            9999999999999999999999875   36899999999999999999999999999999999999999877777654  


Q ss_pred             --CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          140 --GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       140 --~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                        +++++|+|++|.+|++++++++++|++|+.++++ ++.+.++++|++.+++++
T Consensus       161 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~~~~~~~  214 (350)
T cd08248         161 AAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVKSLGADDVIDYN  214 (350)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHHHhCCceEEECC
Confidence              9999999999999999999999999999988854 677888889998888764

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.97  E-value=1.5e-29  Score=203.17  Aligned_cols=186  Identities=32%  Similarity=0.446  Sum_probs=166.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++++  +++++.+.|.+.++|++||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|+++..++
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~   77 (334)
T PRK13771          1 MKAVILPGFKQG--YRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGFK   77 (334)
T ss_pred             CeeEEEcCCCCC--cEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccCC
Confidence            899999988764  888999999999999999999999999999888776543 23477899999999999999998899


Q ss_pred             CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|++..                           .+|+|++|+.++.+.++++|+++++.+++.++..+.++|+++..
T Consensus        78 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~  157 (334)
T PRK13771         78 PGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRR  157 (334)
T ss_pred             CCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHh
Confidence            999999863                           15899999999999999999999999999999999999999866


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      . .++++++++|+|++|.+|++++++++.+|++++.+++++++.+.++++ ++.++++
T Consensus       158 ~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~  213 (334)
T PRK13771        158 A-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVG  213 (334)
T ss_pred             c-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCc
Confidence            5 889999999999999999999999999999999999999998888777 6666654

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=1.5e-29  Score=203.02  Aligned_cols=190  Identities=39%  Similarity=0.551  Sum_probs=163.5

Q ss_pred             EEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCC---CCCCCCCcceEEE---EEEec-CCC
Q 029425            4 IVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPK---GASPYPGLECSGT---ILSVG-KNV   76 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~---~~p~~lg~e~~G~---V~~vG-~~~   76 (193)
                      .+...++.+.....++.+.|.|++++++|++.++++|+.|+....+.+....   .+|.+++.++.|.   +...| ..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~   88 (347)
T KOG1198|consen    9 SLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVV   88 (347)
T ss_pred             EEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccc
Confidence            3334445556666778889999999999999999999999999999887766   6775555555544   45555 334


Q ss_pred             CCCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhc------CCCCCCeEEEEcCCc
Q 029425           77 SRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS------HLSPGESFLVHGGSS  150 (193)
Q Consensus        77 ~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~------~~~~~~~vli~ga~g  150 (193)
                      ..+..|+.+.....+|+|++|+.++...++++|++++++++|+++.++.+||.++....      +.++|+++||+|++|
T Consensus        89 ~~~~~g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsg  168 (347)
T KOG1198|consen   89 GGWVHGDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSG  168 (347)
T ss_pred             cceEeeeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCc
Confidence            56778888777777899999999999999999999999999999999999999999989      899999999999999


Q ss_pred             hHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          151 GIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       151 ~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ++|++++|+|++.++..+++++++++.++++++|+|+++||++
T Consensus       169 gVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~  211 (347)
T KOG1198|consen  169 GVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKD  211 (347)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCC
Confidence            9999999999999987888888999999999999999999986

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.97  E-value=3.3e-29  Score=201.92  Aligned_cols=184  Identities=30%  Similarity=0.416  Sum_probs=164.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.   +.+++.+.|+++++|++||+.++++|+.|+..+.+.+.  ...|.++|+|++|+|+.+|+++..|+
T Consensus         1 ~~a~~~~~~~~---l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~--~~~~~~~g~~~~G~V~~~g~~v~~~~   75 (343)
T cd08236           1 MKALVLTGPGD---LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEVGSGVDDLA   75 (343)
T ss_pred             CeeEEEecCCc---eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC--CCCCcccCcceEEEEEEECCCCCcCC
Confidence            89999998753   88889999999999999999999999999988877652  23468899999999999999999999


Q ss_pred             CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|.+++                           ..|+|++|+.++++.++++|+++++++++.+ ..++++|+++. 
T Consensus        76 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-  153 (343)
T cd08236          76 VGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-  153 (343)
T ss_pred             CCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-
Confidence            999999862                           3589999999999999999999999998877 67889999985 


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ..+++++++++|+|+ |.+|.+++|+|+.+|++ ++++++++++.++++++|++.+++++
T Consensus       154 ~~~~~~~~~vlI~g~-g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~  212 (343)
T cd08236         154 LAGITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPK  212 (343)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCc
Confidence            778999999999975 99999999999999997 99999999999999999999888875

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=5.4e-29  Score=199.40  Aligned_cols=185  Identities=30%  Similarity=0.504  Sum_probs=169.4

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      ||+++...+.+..+++++.+.|.|.+++++||+.++++|+.|...+.+..+....+|.++|+|++|+|+.+|+++..|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~   81 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV   81 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence            79999998888889999999999999999999999999999998888776443346789999999999999999999999


Q ss_pred             CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425           82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK  161 (193)
Q Consensus        82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~  161 (193)
                      ||+|.++...|++++|+.++.+.++++|+++++++++.++.++.++|+++.....++++++++|+|++|.+|++++++++
T Consensus        82 Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~  161 (331)
T cd08273          82 GDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELAL  161 (331)
T ss_pred             CCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence            99999986568899999999999999999999999999999999999999777889999999999999999999999999


Q ss_pred             HCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425          162 CQGVRVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       162 ~~g~~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      .+|++|+.++. +++.+.++++|+..
T Consensus       162 ~~g~~v~~~~~-~~~~~~~~~~g~~~  186 (331)
T cd08273         162 LAGAEVYGTAS-ERNHAALRELGATP  186 (331)
T ss_pred             HcCCEEEEEeC-HHHHHHHHHcCCeE
Confidence            99999999997 88888888899643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=5.2e-29  Score=198.33  Aligned_cols=191  Identities=32%  Similarity=0.553  Sum_probs=172.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++.+..+++++.+.|.+.+++|+|++.++++|++|.....+........|.++|+|++|+|..+|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            89999999888777888888888899999999999999999999888776543333578899999999999999999999


Q ss_pred             CCCEEEEEc-----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425           81 VGDQVCALL-----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF  155 (193)
Q Consensus        81 ~G~~V~~~~-----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~  155 (193)
                      +||+|.++.     ..|++++|+.++.+.++++|+++++.+++.++..+.++|+++.+..+++++++++|+|+++.+|++
T Consensus        81 ~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~  160 (326)
T cd08272          81 VGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHV  160 (326)
T ss_pred             CCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHH
Confidence            999999885     258899999999999999999999999998999999999998888999999999999989999999


Q ss_pred             HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++++++.+|++|+.++++ ++.++++++|++.++++.
T Consensus       161 ~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~  196 (326)
T cd08272         161 AVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYR  196 (326)
T ss_pred             HHHHHHHcCCEEEEEech-HHHHHHHHcCCCEEEecc
Confidence            999999999999999988 889999889988887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=203.67  Aligned_cols=185  Identities=32%  Similarity=0.420  Sum_probs=150.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCC-CCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-YPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~-~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |+++++..+...  .++++.+.|.+.+++|+|||.++++|++|++.+++..+... .|. ++|||++|+|+++| .+..+
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~-~~~~i~GHE~~G~V~evG-~~~~~   76 (350)
T COG1063           1 MKAAVVYVGGGD--VRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVP-PGDIILGHEFVGEVVEVG-VVRGF   76 (350)
T ss_pred             CceeEEEecCCc--cccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCC-CCCcccCccceEEEEEec-cccCC
Confidence            788888876543  33566666668999999999999999999999999765432 244 99999999999999 77889


Q ss_pred             CCCCEEEEEc--------------------------------cCceeeeEEeecCCceEE-CCCCCCHHhHccCcchHHH
Q 029425           80 KVGDQVCALL--------------------------------GGGGYAEKVAVPAGQVLP-VPSGVSLKDAAAFPEVACT  126 (193)
Q Consensus        80 ~~G~~V~~~~--------------------------------~~g~~~~~~~~~~~~~~~-~p~~~~~~~aa~~~~~~~~  126 (193)
                      ++||+|+..+                                .+|+|+||+.+|.++.+. +|+++ +.+++++..++.+
T Consensus        77 ~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~  155 (350)
T COG1063          77 KVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLAT  155 (350)
T ss_pred             CCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhh
Confidence            9999997421                                148999999999766555 58887 5666678899999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh-cCCcEEecC
Q 029425          127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP-FNIRVFIGF  191 (193)
Q Consensus       127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~-~G~~~~~~~  191 (193)
                      ++++.......+++++++|+|+ |.+|++++++++.+|+ +|++++.+++|++++++ .|++.++|.
T Consensus       156 ~~~~~a~~~~~~~~~~V~V~Ga-GpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~  221 (350)
T COG1063         156 AYHGHAERAAVRPGGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP  221 (350)
T ss_pred             hhhhhhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecC
Confidence            9877545555666679999997 9999999999999998 78888999999999998 777777765

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=8e-29  Score=200.38  Aligned_cols=186  Identities=25%  Similarity=0.333  Sum_probs=161.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--------CCCCCCCCCcceEEEEEEe
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--------PKGASPYPGLECSGTILSV   72 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--------~~~~p~~lg~e~~G~V~~v   72 (193)
                      |||+++++++   .+++++.+.|++.+++|+||+.++++|+.|+..+.|....        ..+.|.++|+|++|+|+++
T Consensus         1 mka~~~~~~~---~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~v   77 (350)
T cd08256           1 MRAVVCHGPQ---DYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVEL   77 (350)
T ss_pred             CeeEEEecCC---ceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEe
Confidence            8999998665   3889999999999999999999999999999888775311        0135778999999999999


Q ss_pred             cCCCC--CCCCCCEEEE---------------------------E--ccCceeeeEEeecCC-ceEECCCCCCHHhHccC
Q 029425           73 GKNVS--RWKVGDQVCA---------------------------L--LGGGGYAEKVAVPAG-QVLPVPSGVSLKDAAAF  120 (193)
Q Consensus        73 G~~~~--~~~~G~~V~~---------------------------~--~~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~  120 (193)
                      |+++.  .|++||+|..                           +  ...|+|++|+.++++ .++++|+++++++++.+
T Consensus        78 G~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~  157 (350)
T cd08256          78 GEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI  157 (350)
T ss_pred             CCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhh
Confidence            99998  8999999986                           2  135899999999988 57899999999998887


Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                       .++.++|+++ ...+++++++++|.| +|.+|++++++|+++|++ ++++++++++.+.++++|++.+++++
T Consensus       158 -~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  227 (350)
T cd08256         158 -EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPP  227 (350)
T ss_pred             -hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCC
Confidence             8999999998 778999999999955 599999999999999985 66777888899998999999988764

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=5.7e-29  Score=199.07  Aligned_cols=184  Identities=32%  Similarity=0.494  Sum_probs=160.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++..++ +..+++++.+.|+++++|++||+.++++|++|+....+...  ..+|.++|||++|+|+++|+++..|+
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~   77 (325)
T cd08264           1 MKALVFEKSG-IENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKV--KPMPHIPGAEFAGVVEEVGDHVKGVK   77 (325)
T ss_pred             CeeEEeccCC-CCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCCC--CCCCeecccceeEEEEEECCCCCCCC
Confidence            8999998776 56688888888889999999999999999999987764221  12467899999999999999999999


Q ss_pred             CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|+.+.                           ..|+|++|+.++++.++++|+++++++++.++..+.++|+++..
T Consensus        78 ~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~  157 (325)
T cd08264          78 KGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT  157 (325)
T ss_pred             CCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh
Confidence            999998652                           35889999999999999999999999999999999999999854


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                       .+++++++++|+|++|.+|++++++|+++|++|+++++    .+.++++|++++++++
T Consensus       158 -~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~~~~g~~~~~~~~  211 (325)
T cd08264         158 -AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWLKEFGADEVVDYD  211 (325)
T ss_pred             -cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHHHHhCCCeeecch
Confidence             88999999999999999999999999999999988863    3677789998888764

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=9.4e-29  Score=199.07  Aligned_cols=186  Identities=25%  Similarity=0.373  Sum_probs=165.5

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      |+++++..+  +.+++.+.+.|++.++|++||+.++++|++|...+.+.+.. ..+|.++|||++|+|+++|+++.+|++
T Consensus         1 ~~~~~~~~~--~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~   77 (337)
T cd05283           1 KGYAARDAS--GKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKV   77 (337)
T ss_pred             CceEEecCC--CCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCC
Confidence            467788765  45999999999999999999999999999999988887643 345889999999999999999999999


Q ss_pred             CCEEEEE-----------------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHH
Q 029425           82 GDQVCAL-----------------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACT  126 (193)
Q Consensus        82 G~~V~~~-----------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~  126 (193)
                      ||+|...                                   ..+|+|++|+.++.+.++++|+++++++++.+.+.+.+
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~t  157 (337)
T cd05283          78 GDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGIT  157 (337)
T ss_pred             CCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHH
Confidence            9999731                                   23588999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ||+++.. ..++++++++|.| .|.+|++++++++.+|++++.+++++++.++++++|++.+++++
T Consensus       158 a~~~~~~-~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~  221 (337)
T cd05283         158 VYSPLKR-NGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATK  221 (337)
T ss_pred             HHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCc
Confidence            9999854 4589999999987 59999999999999999999999999999999999999998764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.7e-28  Score=196.61  Aligned_cols=192  Identities=38%  Similarity=0.578  Sum_probs=171.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++...+.+..+++.+.+.|.+.+++++||+.++++|++|+..+.|........|..+|||++|+|+.+|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            89999987766777888888888899999999999999999999888876543334578999999999999999998999


Q ss_pred             CCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|+...                           ..|++++|+.++.+.++++|+++++++++.++.++.++|+++..
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~  160 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVT  160 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHH
Confidence            999998762                           25789999999999999999999999999999999999999878


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ..+++++++++|+|+++.+|.+++++++.+|++++++++++++.+.++.+|.+.+++..
T Consensus       161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  219 (342)
T cd08266         161 RARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYR  219 (342)
T ss_pred             hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecC
Confidence            88999999999999989999999999999999999999999999998888887777653

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.97  E-value=1.3e-28  Score=200.97  Aligned_cols=184  Identities=28%  Similarity=0.465  Sum_probs=160.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      ||++++..++   .+++++.+.|.+ .++|++||+.++++|++|+....|.++.  ..|.++|||++|+|+++|+++..+
T Consensus         1 m~~~~~~~~~---~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~   75 (375)
T cd08282           1 MKAVVYGGPG---NVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESL   75 (375)
T ss_pred             CceEEEecCC---ceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcC
Confidence            8999998654   488999999986 7999999999999999999998887652  358899999999999999999999


Q ss_pred             CCCCEEEEE-------c------------------------------cCceeeeEEeecCC--ceEECCCCCCHH---hH
Q 029425           80 KVGDQVCAL-------L------------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLK---DA  117 (193)
Q Consensus        80 ~~G~~V~~~-------~------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~---~a  117 (193)
                      ++||+|+..       +                              .+|+|++|+.++..  .++++|++++++   ++
T Consensus        76 ~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~  155 (375)
T cd08282          76 KVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDY  155 (375)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhhe
Confidence            999999862       1                              13889999999976  899999999988   46


Q ss_pred             ccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       118 a~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.+..++.++|+++ ...+++++++++|.|+ |.+|++++|+++++|+ +++++.+++++.+.++++|+ ..+|++
T Consensus       156 a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~-g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~  228 (375)
T cd08282         156 LMLSDIFPTGWHGL-ELAGVQPGDTVAVFGA-GPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-IPIDFS  228 (375)
T ss_pred             eeecchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-eEeccC
Confidence            77888899999999 7889999999999875 9999999999999998 79998889999999999998 456654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.97  E-value=2.2e-28  Score=194.49  Aligned_cols=192  Identities=58%  Similarity=0.944  Sum_probs=172.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++.+..++.+..+++++.+.+.+.+++++||+.++++|+.|.....+.+..+..+|.++|||++|+|..+|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            89999988777777888777777789999999999999999999888776654444578999999999999999999999


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                      +||+|.++..+|++++|+.++...++++|+++++.+++.++.++.++|+++.....++++++++|+|+++.+|.++++++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a  160 (325)
T TIGR02824        81 VGDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLA  160 (325)
T ss_pred             CCCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHH
Confidence            99999998666899999999999999999999999999999999999999878889999999999999999999999999


Q ss_pred             HHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.+|++++++.+++++.+.++++|++.+++..
T Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  192 (325)
T TIGR02824       161 KAFGARVFTTAGSDEKCAACEALGADIAINYR  192 (325)
T ss_pred             HHcCCEEEEEeCCHHHHHHHHHcCCcEEEecC
Confidence            99999999999999999988889988777653

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.3e-28  Score=196.69  Aligned_cols=179  Identities=22%  Similarity=0.303  Sum_probs=156.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++   .+++++.+.|+++++|++||+.++++|+.|.....+.++    .|.++|+|++|+|+++|++   ++
T Consensus         1 ~~a~~~~~~~---~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~   70 (319)
T cd08242           1 MKALVLDGGL---DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---EL   70 (319)
T ss_pred             CeeEEEeCCC---cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CC
Confidence            8999998754   489999999999999999999999999999998888664    3789999999999999987   67


Q ss_pred             CCCEEEEE----------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCAL----------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|...                            ..+|+|++|+.++.+.++++|++++.++++.+ .+..++|..+ 
T Consensus        71 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~-  148 (319)
T cd08242          71 VGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL-  148 (319)
T ss_pred             CCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH-
Confidence            99998631                            12588999999999999999999998887753 4455666555 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ...+++++++++|+| +|.+|++++|+++.+|+++++++.++++.++++++|++.+++++
T Consensus       149 ~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~  207 (319)
T cd08242         149 EQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDE  207 (319)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCcc
Confidence            778899999999997 59999999999999999999999999999999999999888764

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.97  E-value=1.4e-28  Score=197.35  Aligned_cols=184  Identities=33%  Similarity=0.475  Sum_probs=164.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++   .+++.+.+.|++.++|++||+.++++|+.|+....|.++..  +|.++|+|++|+|+.+|+++.+++
T Consensus         1 ~~a~~~~~~~---~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~--~p~~~g~~~~G~v~~vG~~v~~~~   75 (334)
T cd08234           1 MKALVYEGPG---ELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA--PPLVPGHEFAGVVVAVGSKVTGFK   75 (334)
T ss_pred             CeeEEecCCC---ceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCCC--CCcccccceEEEEEEeCCCCCCCC
Confidence            8999998766   38899999999999999999999999999999888876532  578999999999999999999999


Q ss_pred             CCCEEEEE---------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCAL---------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~~---------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|+..                           ..+|++++|+.++.+.++++|+++++.+++.+ .++.++++++ .
T Consensus        76 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~  153 (334)
T cd08234          76 VGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-D  153 (334)
T ss_pred             CCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-H
Confidence            99999761                           13588999999999999999999999888765 7788999988 7


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ..+++++++++|+|+ |.+|.+++++++++|++ ++++++++++.+.++++|++.+++++
T Consensus       154 ~~~~~~g~~vlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~  212 (334)
T cd08234         154 LLGIKPGDSVLVFGA-GPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPS  212 (334)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCC
Confidence            789999999999975 99999999999999997 88899999999999889988888764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.7e-28  Score=194.19  Aligned_cols=192  Identities=34%  Similarity=0.496  Sum_probs=172.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++...+.+..+.+.+.+.|.+.+++++|++.++++|+.|.....+.+.....+|.++|||++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            89999998777777888888888899999999999999999999887776554334578899999999999999999999


Q ss_pred             CCCEEEEEc-----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425           81 VGDQVCALL-----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF  155 (193)
Q Consensus        81 ~G~~V~~~~-----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~  155 (193)
                      +||+|.++.     .+|.+++|+.++.+.++++|+++++++++.++.++.++|+++.....+.++++++|+|+++.+|++
T Consensus        81 ~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~  160 (328)
T cd08268          81 VGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLA  160 (328)
T ss_pred             CCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHH
Confidence            999999874     248899999999999999999999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++++++..|++++.+++++++.+.++++|++.+++++
T Consensus       161 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  197 (328)
T cd08268         161 AIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTD  197 (328)
T ss_pred             HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecC
Confidence            9999999999999999999999999889988887754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.97  E-value=2.2e-28  Score=197.15  Aligned_cols=183  Identities=30%  Similarity=0.453  Sum_probs=160.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCC-CCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~-~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++..+.   .+++++.+.|.|. ++||+||+.++++|+.|+....+.++  ...|.++|+|++|+|+++|+++..+
T Consensus         1 ~~a~~~~~~~---~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~vG~~v~~~   75 (344)
T cd08284           1 MKAVVFKGPG---DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP--STPGFVLGHEFVGEVVEVGPEVRTL   75 (344)
T ss_pred             CeeEEEecCC---CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC--CCCCcccccceEEEEEeeCCCcccc
Confidence            8999998753   4889999999885 99999999999999999988887665  2347889999999999999999999


Q ss_pred             CCCCEEEEEcc-------------------------------CceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHH
Q 029425           80 KVGDQVCALLG-------------------------------GGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACT  126 (193)
Q Consensus        80 ~~G~~V~~~~~-------------------------------~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~  126 (193)
                      ++||+|++++.                               +|++++|+.++++  .++++|+++++++++.++.++++
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~t  155 (344)
T cd08284          76 KVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPT  155 (344)
T ss_pred             CCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHH
Confidence            99999987531                               4889999999865  99999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ||+++. ..++.++++++|+| +|.+|++++++++.+|+ +++++.+++++...++++|+. .+++
T Consensus       156 a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~  218 (344)
T cd08284         156 GYFGAK-RAQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINF  218 (344)
T ss_pred             HHhhhH-hcCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEec
Confidence            999995 47889999999997 59999999999999997 899988888888888889974 4544

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.97  E-value=2e-28  Score=197.39  Aligned_cols=186  Identities=27%  Similarity=0.299  Sum_probs=157.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      ||+++++++++  .+++.+.+.|.|.++|++||+.++++|++|...+.+...  ....+|.++|+|++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~~--~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~   78 (341)
T PRK05396          1 MKALVKLKAEP--GLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTG   78 (341)
T ss_pred             CceEEEecCCC--ceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCc
Confidence            89999988763  489999999999999999999999999999987655321  11235778999999999999999999


Q ss_pred             CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      +++||+|++..                           .+|+|++|+.++.+.++++|+++++++++. ..++.++++++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~-~~~~~~~~~~~  157 (341)
T PRK05396         79 FKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAI-FDPFGNAVHTA  157 (341)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHh-hhHHHHHHHHH
Confidence            99999998751                           358999999999999999999999988874 45666666655


Q ss_pred             HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ..  ...+|++++|.|+ |.+|.+++|+++++|+ +++++.+++++.+.++++|++.+++++
T Consensus       158 ~~--~~~~g~~vlV~~~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~  216 (341)
T PRK05396        158 LS--FDLVGEDVLITGA-GPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVA  216 (341)
T ss_pred             Hc--CCCCCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCc
Confidence            32  3468999999875 9999999999999999 688888888899999999999999875

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.97  E-value=3.2e-28  Score=196.93  Aligned_cols=191  Identities=32%  Similarity=0.466  Sum_probs=159.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCC-CCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC-C
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQ-IKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS-R   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~-~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~-~   78 (193)
                      .|++++.+.+.+..++..+.+.|. +.+++|+||+.++++|++|+..+.+........|.++|+|++|+|+++|+++. .
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (352)
T cd08247           1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE   80 (352)
T ss_pred             CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence            478999998877555544444443 49999999999999999999877543222122367899999999999999998 8


Q ss_pred             CCCCCEEEEEc-----cCceeeeEEeecCC----ceEECCCCCCHHhHccCcchHHHHHHHHHHhc-CCCCCCeEEEEcC
Q 029425           79 WKVGDQVCALL-----GGGGYAEKVAVPAG----QVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS-HLSPGESFLVHGG  148 (193)
Q Consensus        79 ~~~G~~V~~~~-----~~g~~~~~~~~~~~----~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~vli~ga  148 (193)
                      |++||+|+++.     ..|+|++|+.++..    .++++|+++++.+++.++..+.++|+++.... ++++|++++|+|+
T Consensus        81 ~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga  160 (352)
T cd08247          81 WKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGG  160 (352)
T ss_pred             CCCCCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECC
Confidence            99999999875     25899999999987    78999999999999999999999999997766 7999999999999


Q ss_pred             CchHHHHHHHHHHHCC-C-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          149 SSGIGTFAIQMGKCQG-V-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       149 ~g~~G~~~i~~~~~~g-~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++.+|++++++|+.+| . .++.+. ++++.+.++++|++.+++++
T Consensus       161 ~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~  205 (352)
T cd08247         161 STSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYD  205 (352)
T ss_pred             CchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecC
Confidence            9999999999999974 5 566655 56667788889999999864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3.1e-28  Score=193.79  Aligned_cols=187  Identities=37%  Similarity=0.543  Sum_probs=161.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++++++ +..+++++++.|++.+++|+||+.++++|+.|...+.+.+.. ...|.++|+|++|+|+.+|++++.|+
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   78 (306)
T cd08258           1 MKALVKTGPG-PGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWK   78 (306)
T ss_pred             CeeEEEecCC-CCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCC
Confidence            8999998743 456899999999999999999999999999999888776522 23467899999999999999999999


Q ss_pred             CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|+++.                            .+|+|++|+.++...++++|+++++++++ ++.+..++|+++.
T Consensus        79 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~  157 (306)
T cd08258          79 VGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVA  157 (306)
T ss_pred             CCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHH
Confidence            999998864                            14899999999999999999999999876 7788899999988


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC--CcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG--LATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~--~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ...+++++++++|.| +|.+|.+++++++++|++|+.+..  ++++.+.++++|++.+ +++
T Consensus       158 ~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~  217 (306)
T cd08258         158 ERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAV-NGG  217 (306)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCccc-CCC
Confidence            888999999999976 599999999999999999887633  4447777788898777 653

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=7.4e-28  Score=191.90  Aligned_cols=190  Identities=35%  Similarity=0.589  Sum_probs=169.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++....+++++.+.|++.+++++||+.++++|+.|+....+.... ...|.++|||++|+|+.+|+++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~~   79 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGWK   79 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcCC
Confidence            89999998874335999999999999999999999999999999887766532 12367899999999999999999999


Q ss_pred             CCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHH
Q 029425           81 VGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAI  157 (193)
Q Consensus        81 ~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i  157 (193)
                      +||+|.++.   .+++|++|+.++.+.++++|+++++.+++.+..++.++++++....+++++++++|+|+.+.+|++++
T Consensus        80 ~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~  159 (325)
T cd08271          80 VGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAV  159 (325)
T ss_pred             CCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHH
Confidence            999999885   36889999999999999999999999999999999999999988889999999999999899999999


Q ss_pred             HHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          158 QMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       158 ~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++++.+|++++.+. ++++.+.++++|++.+++..
T Consensus       160 ~~a~~~g~~v~~~~-~~~~~~~~~~~g~~~~~~~~  193 (325)
T cd08271         160 QLAKRAGLRVITTC-SKRNFEYVKSLGADHVIDYN  193 (325)
T ss_pred             HHHHHcCCEEEEEE-cHHHHHHHHHcCCcEEecCC
Confidence            99999999999887 77888888889998888754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=8.3e-28  Score=190.48  Aligned_cols=189  Identities=32%  Similarity=0.452  Sum_probs=169.7

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      ||+....++.+..+.+.+.+.+.+.+++++|++.++++|+.|+....+.++.  .+|.++|+|++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~   78 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKV   78 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCC
Confidence            5777777777767888887777789999999999999999999888776543  34678999999999999999999999


Q ss_pred             CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425           82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK  161 (193)
Q Consensus        82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~  161 (193)
                      ||+|.++...|++++|+.++.+.++++|++++..+++.++..++++|+++....+++++++++|+|++|.+|++++++++
T Consensus        79 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~  158 (320)
T cd05286          79 GDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAK  158 (320)
T ss_pred             CCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence            99999885358899999999999999999999999999999999999999888899999999999998999999999999


Q ss_pred             HCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          162 CQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       162 ~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      .+|++++++++++++.+.++++|++.+++++
T Consensus       159 ~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  189 (320)
T cd05286         159 ALGATVIGTVSSEEKAELARAAGADHVINYR  189 (320)
T ss_pred             HcCCEEEEEcCCHHHHHHHHHCCCCEEEeCC
Confidence            9999999999999999999999998888754

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.96  E-value=4e-28  Score=194.59  Aligned_cols=186  Identities=30%  Similarity=0.420  Sum_probs=165.0

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      ||+++.+++.  .+++++.+.|.+.+++++|++.++++|+.|.....+.+.. ..+|.++|+|++|+|+++|+++.+|++
T Consensus         1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~   77 (330)
T cd08245           1 KAAVVHAAGG--PLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKV   77 (330)
T ss_pred             CeEEEecCCC--CceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCccccc
Confidence            6888988753  3889999999999999999999999999999888876542 235789999999999999999999999


Q ss_pred             CCEEEE----------------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           82 GDQVCA----------------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        82 G~~V~~----------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      ||+|+.                            +...|+|++|+.++.+.++++|+++++.+++.++..+.++|+++..
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~  157 (330)
T cd08245          78 GDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD  157 (330)
T ss_pred             CCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh
Confidence            999973                            2135889999999999999999999999999999999999999854


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                       .+++++++++|+|+ |.+|++++++++.+|++|+++++++++.++++++|++.+++++
T Consensus       158 -~~~~~~~~vlI~g~-g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~  214 (330)
T cd08245         158 -AGPRPGERVAVLGI-GGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSG  214 (330)
T ss_pred             -hCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccC
Confidence             78899999999976 7799999999999999999999999999999999998888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.96  E-value=8.5e-28  Score=193.83  Aligned_cols=185  Identities=29%  Similarity=0.426  Sum_probs=156.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      ||++++++++.   +++++.+.|.| +++|++||+.++++|++|+..+.|.++.  ..|.++|||++|+|+++|+++..+
T Consensus         1 m~~~~~~~~~~---~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~   75 (345)
T cd08287           1 MRATVIHGPGD---IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSV   75 (345)
T ss_pred             CceeEEecCCc---eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCcc
Confidence            89999987553   88999999986 8999999999999999999888876642  347899999999999999999999


Q ss_pred             CCCCEEEE-Ec--------------------------cCceeeeEEeecCC--ceEECCCCCCHHhHc-----cCcchHH
Q 029425           80 KVGDQVCA-LL--------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLKDAA-----AFPEVAC  125 (193)
Q Consensus        80 ~~G~~V~~-~~--------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa-----~~~~~~~  125 (193)
                      ++||+|+. +.                          .+|+|++|+.++.+  .++++|++++++++.     ++...+.
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~  155 (345)
T cd08287          76 KPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMG  155 (345)
T ss_pred             CCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHH
Confidence            99999986 21                          13889999999874  899999999872221     2235678


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++|+++ ...+++++++++|.| +|.+|++++|+++++|++ ++++.+++++.+.++++|++.+++++
T Consensus       156 ~a~~~~-~~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~  221 (345)
T cd08287         156 TGHHAA-VSAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAER  221 (345)
T ss_pred             HHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCC
Confidence            899988 467889999999987 599999999999999996 77777787788888999999999875

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.1e-27  Score=196.18  Aligned_cols=176  Identities=27%  Similarity=0.392  Sum_probs=152.6

Q ss_pred             eEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCC------CCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEE-
Q 029425           15 LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS------YPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCA-   87 (193)
Q Consensus        15 ~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~------~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~-   87 (193)
                      +++++.+.|.+++++++||+.++++|++|+..+.+.      ++...++|.++|||++|+|+++|+++..|++||+|+. 
T Consensus        39 ~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~  118 (384)
T cd08265          39 LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAE  118 (384)
T ss_pred             EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEEC
Confidence            899999999999999999999999999999877632      1222345789999999999999999999999999985 


Q ss_pred             --------------------------EccCceeeeEEeecCCceEECCCCC-------CHHhHccCcchHHHHHHHHHHh
Q 029425           88 --------------------------LLGGGGYAEKVAVPAGQVLPVPSGV-------SLKDAAAFPEVACTVWSTVFMT  134 (193)
Q Consensus        88 --------------------------~~~~g~~~~~~~~~~~~~~~~p~~~-------~~~~aa~~~~~~~~a~~~l~~~  134 (193)
                                                +..+|+|++|+.++++.++++|+++       +.. +++++.++.++|+++...
T Consensus       119 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~  197 (384)
T cd08265         119 EMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIR  197 (384)
T ss_pred             CCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhh
Confidence                                      3336899999999999999999863       444 556778899999998666


Q ss_pred             -cCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          135 -SHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       135 -~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                       .+++++++++|+|+ |.+|++++++++.+|+ +|+.+++++++.+.++++|++++++++
T Consensus       198 ~~~~~~g~~VlV~g~-g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~  256 (384)
T cd08265         198 GGGFRPGAYVVVYGA-GPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPT  256 (384)
T ss_pred             cCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEccc
Confidence             68999999999975 9999999999999999 799999888899999999999999875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.96  E-value=1.6e-27  Score=188.28  Aligned_cols=191  Identities=37%  Similarity=0.626  Sum_probs=168.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      ||++++..++....+.+++.+.|.+++++++||+.++++|+.|+..+.+...  .....|..+|+|++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            8999999887766677777777888999999999999999999988877642  11234789999999999999999999


Q ss_pred             CCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425           79 WKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF  155 (193)
Q Consensus        79 ~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~  155 (193)
                      +++||+|.++.   ..|+|++|+.++...++++|+++++.+++.++..+.++++++.....+.++++++|+|++|.+|++
T Consensus        81 ~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~  160 (309)
T cd05289          81 FKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSF  160 (309)
T ss_pred             CCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHH
Confidence            99999999985   258899999999999999999999999988999999999999777778999999999998999999


Q ss_pred             HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++++++.+|++++.++.++ +.+.++++|++.+++++
T Consensus       161 ~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~  196 (309)
T cd05289         161 AVQLAKARGARVIATASAA-NADFLRSLGADEVIDYT  196 (309)
T ss_pred             HHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCC
Confidence            9999999999999998777 88888889988887754

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.96  E-value=2e-27  Score=191.73  Aligned_cols=184  Identities=27%  Similarity=0.356  Sum_probs=157.0

Q ss_pred             EEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCC-CCC-CCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            3 AIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS-YPP-PKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         3 a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~-~~~-~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |+++++++   .+.+++.+.|.+.++|++||+.++++|+.|...+.+. ... ....|.++|+|++|+|+++|+++.+|+
T Consensus         1 ~~~~~~~~---~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   77 (343)
T cd05285           1 AAVLHGPG---DLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLK   77 (343)
T ss_pred             CceEecCC---ceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCC
Confidence            35667653   3888999999999999999999999999998766422 111 112467899999999999999999999


Q ss_pred             CCCEEEE------------------------E----ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCA------------------------L----LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~------------------------~----~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|++                        +    ...|+|++|+.++++.++++|+++++++++.+ .++.++|+++ 
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-  155 (343)
T cd05285          78 VGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-  155 (343)
T ss_pred             CCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-
Confidence            9999986                        1    02588999999999999999999999998766 6788899887 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ...+++++++++|+|+ |.+|++++|+|+++|++ |+++++++++.++++++|++.+++++
T Consensus       156 ~~~~~~~g~~vlI~g~-g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  215 (343)
T cd05285         156 RRAGVRPGDTVLVFGA-GPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVR  215 (343)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccc
Confidence            7889999999999875 99999999999999997 88898899999999999999999875

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.96  E-value=2.9e-27  Score=190.34  Aligned_cols=182  Identities=25%  Similarity=0.369  Sum_probs=154.5

Q ss_pred             EEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhc-CCCC-CCCCCCCCCCcceEEEEEEecCCCCCCCCC
Q 029425            5 VITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRK-GSYP-PPKGASPYPGLECSGTILSVGKNVSRWKVG   82 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~-~~~~-~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G   82 (193)
                      ++++.+   .+++++.+.|+++++||+||+.++++|++|...+. +.+. .....|.++|+|++|+|+++|+++.+|++|
T Consensus         2 ~~~~~~---~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~G   78 (339)
T cd08232           2 VIHAAG---DLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPG   78 (339)
T ss_pred             eeccCC---ceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCC
Confidence            445443   48999999999999999999999999999987763 3221 112347789999999999999999999999


Q ss_pred             CEEEEE--------------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHH
Q 029425           83 DQVCAL--------------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST  130 (193)
Q Consensus        83 ~~V~~~--------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~  130 (193)
                      |+|+..                                ..+|+|++|+.++.+.++++|+++++++++. ..+++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~  157 (339)
T cd08232          79 QRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHA  157 (339)
T ss_pred             CEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHH
Confidence            999862                                1258999999999999999999999988865 6788899999


Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.....+ ++++++|.|+ |.+|++++|+++++|+ +++++++++++.+.++++|++.+++++
T Consensus       158 l~~~~~~-~~~~VLI~g~-g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~  218 (339)
T cd08232         158 VNRAGDL-AGKRVLVTGA-GPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLA  218 (339)
T ss_pred             HHhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCC
Confidence            8666666 8999999875 9999999999999999 789999888888988999999999875

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=7.1e-27  Score=185.52  Aligned_cols=191  Identities=39%  Similarity=0.632  Sum_probs=168.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCC-CCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~-~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |+|+++..++.+..+++.+.+ |.+. +++++|++.++++|+.|+....+.+......|.++|+|++|+|..+|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            899999877766668887777 6655 59999999999999999988777654333346789999999999999999999


Q ss_pred             CCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425           80 KVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM  159 (193)
Q Consensus        80 ~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~  159 (193)
                      ++||+|.++...|++++|+.++.+.++++|++++..+++.+..++.++++++....+++++++++|+|++|.+|++++++
T Consensus        80 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~  159 (323)
T cd08241          80 KVGDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQL  159 (323)
T ss_pred             CCCCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHH
Confidence            99999999864688999999999999999999998888889999999999987788899999999999999999999999


Q ss_pred             HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++.+|++|+.++.++++.+.++++|++.+++++
T Consensus       160 a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~  192 (323)
T cd08241         160 AKALGARVIAAASSEEKLALARALGADHVIDYR  192 (323)
T ss_pred             HHHhCCEEEEEeCCHHHHHHHHHcCCceeeecC
Confidence            999999999999999999999889988877654

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=4.6e-27  Score=186.85  Aligned_cols=186  Identities=35%  Similarity=0.549  Sum_probs=162.2

Q ss_pred             EcCCCCCCce--EEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            6 ITQPGSPEVL--QLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         6 ~~~~~~~~~~--~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      .+..+++..+  ++.+.+.|++.+++|+|++.++++|+.|.....+.+..  ....|..+|+|++|+|.++|+++..+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~   82 (319)
T cd08267           3 YTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKV   82 (319)
T ss_pred             eCCCCChhhhhhccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCC
Confidence            3445555444  77888889999999999999999999999888776521  1224678999999999999999999999


Q ss_pred             CCEEEEEcc---CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHH
Q 029425           82 GDQVCALLG---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQ  158 (193)
Q Consensus        82 G~~V~~~~~---~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~  158 (193)
                      ||+|+.+..   .|+|++|+.++.+.++++|+++++++++.+++++.++|+++.....++++++++|+|++|.+|+++++
T Consensus        83 Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~  162 (319)
T cd08267          83 GDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQ  162 (319)
T ss_pred             CCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            999998853   58899999999999999999999999999999999999999877789999999999999999999999


Q ss_pred             HHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          159 MGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       159 ~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++.+|++|+.++++ ++.+.++++|++.+++++
T Consensus       163 la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~  195 (319)
T cd08267         163 IAKALGAHVTGVCST-RNAELVRSLGADEVIDYT  195 (319)
T ss_pred             HHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCC
Confidence            999999999998865 888999999998888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.96  E-value=3e-27  Score=181.08  Aligned_cols=177  Identities=17%  Similarity=0.190  Sum_probs=148.9

Q ss_pred             CCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEec--CCCCCCCCCCEEEEEc
Q 029425           12 PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVG--KNVSRWKVGDQVCALL   89 (193)
Q Consensus        12 ~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG--~~~~~~~~G~~V~~~~   89 (193)
                      ++.|++++.++|.|+++|+|+|+.|.|++|+.+..++.....  -.|.-+|...+|.++...  |..+.|++||.|.+..
T Consensus        24 ~d~F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~SY--~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~  101 (340)
T COG2130          24 PDDFRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAPSY--APPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS  101 (340)
T ss_pred             CCCceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCccc--CCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc
Confidence            356999999999999999999999999999877655543221  236667766554333222  6678999999999885


Q ss_pred             cCceeeeEEeecCCceEECCCCC--CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEE
Q 029425           90 GGGGYAEKVAVPAGQVLPVPSGV--SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRV  167 (193)
Q Consensus        90 ~~g~~~~~~~~~~~~~~~~p~~~--~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v  167 (193)
                         +|++|..++.+.+.++.++.  -......+.++..|||.+|.+.++.++|++++|.+|+|.+|..+.|+|+..|++|
T Consensus       102 ---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rV  178 (340)
T COG2130         102 ---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRV  178 (340)
T ss_pred             ---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeE
Confidence               49999999999999886432  1234567899999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCcchHHHHhh-cCCcEEecCCC
Q 029425          168 FVTAGLATRFILCQP-FNIRVFIGFGY  193 (193)
Q Consensus       168 ~~~~~~~~~~~~~~~-~G~~~~~~~~~  193 (193)
                      +.+..+++|.+++++ +|+|.+|||++
T Consensus       179 VGiaGg~eK~~~l~~~lGfD~~idyk~  205 (340)
T COG2130         179 VGIAGGAEKCDFLTEELGFDAGIDYKA  205 (340)
T ss_pred             EEecCCHHHHHHHHHhcCCceeeecCc
Confidence            999999999999998 99999999985

>cd08251 polyketide_synthase polyketide synthase

Probab=99.96  E-value=7.9e-27  Score=183.98  Aligned_cols=170  Identities=32%  Similarity=0.468  Sum_probs=155.3

Q ss_pred             CCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEc--cCceeeeEEe
Q 029425           22 DPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL--GGGGYAEKVA   99 (193)
Q Consensus        22 ~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~--~~g~~~~~~~   99 (193)
                      .|++.+++++||+.++++|+.|+..+.+.++....+|.++|+|++|+|+++|+++.+|++||+|+++.  .+|+|++|+.
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~   81 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVT   81 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEE
Confidence            46789999999999999999999988887654445688999999999999999999999999999875  2488999999


Q ss_pred             ecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          100 VPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       100 ~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      ++.+.++++|+++++++++.++..+.++|+++ ...+++++++++|+++++.+|++++++++++|++++.+++++++.+.
T Consensus        82 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  160 (303)
T cd08251          82 VPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEY  160 (303)
T ss_pred             ccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            99999999999999999999999999999998 57889999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcEEecCC
Q 029425          180 CQPFNIRVFIGFG  192 (193)
Q Consensus       180 ~~~~G~~~~~~~~  192 (193)
                      ++++|++.+++++
T Consensus       161 ~~~~g~~~~~~~~  173 (303)
T cd08251         161 LKQLGVPHVINYV  173 (303)
T ss_pred             HHHcCCCEEEeCC
Confidence            9999999888764

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.95  E-value=1.5e-26  Score=185.22  Aligned_cols=186  Identities=20%  Similarity=0.273  Sum_probs=158.3

Q ss_pred             EEEEEcCCC----CCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCC
Q 029425            2 KAIVITQPG----SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKN   75 (193)
Q Consensus         2 ~a~~~~~~~----~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~   75 (193)
                      |+|++...+    .+..+++++.+.|.+.+++++||+.++++|+.|.....+...  .+...+.++|+|++|+|+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~   82 (329)
T cd05288           3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP   82 (329)
T ss_pred             cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence            678887755    456799999999999999999999999999988765554321  11112457899999999999964


Q ss_pred             CCCCCCCCEEEEEccCceeeeEEeecC-CceEECCCCCC--HHhHcc-CcchHHHHHHHHHHhcCCCCCCeEEEEcCCch
Q 029425           76 VSRWKVGDQVCALLGGGGYAEKVAVPA-GQVLPVPSGVS--LKDAAA-FPEVACTVWSTVFMTSHLSPGESFLVHGGSSG  151 (193)
Q Consensus        76 ~~~~~~G~~V~~~~~~g~~~~~~~~~~-~~~~~~p~~~~--~~~aa~-~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~  151 (193)
                        .+++||+|+++   ++|++|+.++. +.++++|++++  +.+++. ++.++.++|+++.....+.++++++|+|++|.
T Consensus        83 --~~~~Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~  157 (329)
T cd05288          83 --DFKVGDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGA  157 (329)
T ss_pred             --CCCCCCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcch
Confidence              79999999887   36999999999 99999999985  444444 88999999999977788899999999998899


Q ss_pred             HHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCcEEecCC
Q 029425          152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIRVFIGFG  192 (193)
Q Consensus       152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~~~~~~~  192 (193)
                      +|++++++++.+|++|+.+++++++.+.+++ +|++.+++++
T Consensus       158 ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~  199 (329)
T cd05288         158 VGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYK  199 (329)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecC
Confidence            9999999999999999999999999999988 9999998875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05281 TDH Threonine dehydrogenase

Probab=99.95  E-value=1.1e-26  Score=187.38  Aligned_cols=186  Identities=31%  Similarity=0.336  Sum_probs=157.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCC--CCCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSY--PPPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~--~~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      ||+++.+.++.  .+++.+.+.|.++++|++||+.++++|+.|+..+.+..  ......|.++|+|++|+|+.+|++++.
T Consensus         1 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~   78 (341)
T cd05281           1 MKAIVKTKAGP--GAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTR   78 (341)
T ss_pred             CcceEEecCCC--ceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCC
Confidence            89999997664  48889999999999999999999999999988754421  111234678999999999999999999


Q ss_pred             CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      +++||+|.++.                           ..|+|++|+.++.+.++++|++++++++ +++.++.++++++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~  157 (341)
T cd05281          79 VKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTV  157 (341)
T ss_pred             CCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHHH
Confidence            99999998751                           3588999999999999999999998544 5777888888877


Q ss_pred             HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      .  ...+++++++|+|+ |.+|++++++++.+|+ +++++.+++++.+.++++|++++++++
T Consensus       158 ~--~~~~~g~~vlV~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~  216 (341)
T cd05281         158 L--AGDVSGKSVLITGC-GPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR  216 (341)
T ss_pred             H--hcCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcc
Confidence            4  45578999999875 9999999999999999 788888888899999999999888764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=3.2e-26  Score=183.31  Aligned_cols=190  Identities=38%  Similarity=0.583  Sum_probs=163.2

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      ||+++...+.+..+++.+.+.|.+.+++++||+.++++|+.|.....+.+......|.++|+|++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            57777777766678888888788899999999999999999998887765433345778999999999999999999999


Q ss_pred             CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425           82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK  161 (193)
Q Consensus        82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~  161 (193)
                      ||+|+++..+|+|++|+.++.+.++++|+++++.+++.++.++.++|+++....+++++++++|+|++|.+|++++++++
T Consensus        81 G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~  160 (337)
T cd08275          81 GDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCK  160 (337)
T ss_pred             CCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHH
Confidence            99999997668999999999999999999999999998999999999998888899999999999999999999999999


Q ss_pred             HC-CCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          162 CQ-GVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       162 ~~-g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      .+ +..++.. ..+++.+.++++|++.+++++
T Consensus       161 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~  191 (337)
T cd08275         161 TVPNVTVVGT-ASASKHEALKENGVTHVIDYR  191 (337)
T ss_pred             HccCcEEEEe-CCHHHHHHHHHcCCcEEeeCC
Confidence            98 3333322 234578888889998888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=2.4e-26  Score=182.58  Aligned_cols=175  Identities=23%  Similarity=0.300  Sum_probs=150.6

Q ss_pred             CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhh-cCCCCCC-CCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEcc
Q 029425           13 EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQR-KGSYPPP-KGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLG   90 (193)
Q Consensus        13 ~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~-~~~~~~~-~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~   90 (193)
                      +.+++++++.|++.++|++||+.++++|+.|...+ .+..... ...|.++|+|++|+|+++|+++.++++||+|+.+. 
T Consensus         5 ~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~-   83 (312)
T cd08269           5 GRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS-   83 (312)
T ss_pred             CeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec-
Confidence            45899999999999999999999999999999877 6653221 12477899999999999999999999999999885 


Q ss_pred             CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEE
Q 029425           91 GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFV  169 (193)
Q Consensus        91 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~  169 (193)
                      .|+|++|+.++.+.++++|+++  .+++....++.++++++. ..+++++++++|+| .|.+|.+++++|+.+|++ +++
T Consensus        84 ~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~  159 (312)
T cd08269          84 GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIA  159 (312)
T ss_pred             CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEE
Confidence            5889999999999999999988  233322377889999885 78899999999997 599999999999999998 999


Q ss_pred             EeCCcchHHHHhhcCCcEEecCC
Q 029425          170 TAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       170 ~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.+++++.++++++|++.+++++
T Consensus       160 ~~~~~~~~~~~~~~g~~~~~~~~  182 (312)
T cd08269         160 IDRRPARLALARELGATEVVTDD  182 (312)
T ss_pred             ECCCHHHHHHHHHhCCceEecCC
Confidence            99999899988999998888753

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.95  E-value=1.8e-26  Score=185.98  Aligned_cols=180  Identities=29%  Similarity=0.328  Sum_probs=150.9

Q ss_pred             cCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCCCCCCCE
Q 029425            7 TQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSRWKVGDQ   84 (193)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~   84 (193)
                      ++++.+  +++++.+.|.++++|++||+.++++|+.|+..+.+...  .....|.++|+|++|+|+++|+++.+|++||+
T Consensus         5 ~~~~~~--~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~   82 (340)
T TIGR00692         5 TKPGYG--AELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDY   82 (340)
T ss_pred             ccCCCC--cEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCE
Confidence            345544  78889999999999999999999999999987655421  11224668999999999999999999999999


Q ss_pred             EEE---------------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCC
Q 029425           85 VCA---------------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL  137 (193)
Q Consensus        85 V~~---------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~  137 (193)
                      |+.                           +...|+|++|+.++++.++++|++++++++ +++.++.++++++  ....
T Consensus        83 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~  159 (340)
T TIGR00692        83 VSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGP  159 (340)
T ss_pred             EEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccC
Confidence            987                           224588999999999999999999998655 5778888998876  3457


Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++++++|.|+ |.+|.+++|+++++|++ |+++.+++++.+.++++|++.+++++
T Consensus       160 ~~g~~vlI~~~-g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  214 (340)
T TIGR00692       160 ISGKSVLVTGA-GPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPF  214 (340)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEccc
Confidence            89999999775 99999999999999997 88887788888988999998888764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.95  E-value=4.8e-26  Score=185.17  Aligned_cols=175  Identities=22%  Similarity=0.302  Sum_probs=147.6

Q ss_pred             ceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEc--
Q 029425           14 VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL--   89 (193)
Q Consensus        14 ~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~--   89 (193)
                      .+++++.+.|.+.++||+||+.++++|++|+..+.+....  ....|.++|||++|+|+++|+++.+|++||+|+..+  
T Consensus        28 ~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~  107 (364)
T PLN02702         28 TLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGI  107 (364)
T ss_pred             ceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCC
Confidence            3788888888899999999999999999999888763211  112477899999999999999999999999998621  


Q ss_pred             --------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeE
Q 029425           90 --------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESF  143 (193)
Q Consensus        90 --------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~v  143 (193)
                                                .+|+|++|+.++.+.++++|+++++++++.. .++..+|+++ ...++.+++++
T Consensus       108 ~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~v  185 (364)
T PLN02702        108 SCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNV  185 (364)
T ss_pred             CCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEE
Confidence                                      1588999999999999999999999888742 3455688887 67888999999


Q ss_pred             EEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecC
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +|+|+ |.+|++++++++++|++ ++++.+++++.+.++++|++.++++
T Consensus       186 lI~g~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~  233 (364)
T PLN02702        186 LVMGA-GPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLV  233 (364)
T ss_pred             EEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEec
Confidence            99975 99999999999999995 6777778888999999999988765

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=2.8e-26  Score=178.17  Aligned_cols=163  Identities=37%  Similarity=0.621  Sum_probs=147.9

Q ss_pred             eEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEc-------------------
Q 029425           29 EVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL-------------------   89 (193)
Q Consensus        29 evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~-------------------   89 (193)
                      ||+|++.++++|+.|+..+.+..+.....|.++|+|++|+|.++|+++..|++||+|+++.                   
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   80 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGI   80 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCE
Confidence            6899999999999999988887652334578999999999999999999999999999875                   


Q ss_pred             ----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC
Q 029425           90 ----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV  165 (193)
Q Consensus        90 ----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~  165 (193)
                          ..|++++|+.++.+.++++|+++++++++.++.++.++|+++.....++++++++|+|+.+ +|++++++++.+|.
T Consensus        81 ~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~  159 (271)
T cd05188          81 LGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGA  159 (271)
T ss_pred             eccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCC
Confidence                2589999999999999999999999999999999999999997777779999999999866 99999999999999


Q ss_pred             EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          166 RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       166 ~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|+++++++++.+.++++|++.+++++
T Consensus       160 ~v~~~~~~~~~~~~~~~~g~~~~~~~~  186 (271)
T cd05188         160 RVIVTDRSDEKLELAKELGADHVIDYK  186 (271)
T ss_pred             eEEEEcCCHHHHHHHHHhCCceeccCC
Confidence            999999999999999999998888764

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.93  E-value=2.1e-24  Score=168.69  Aligned_cols=161  Identities=34%  Similarity=0.535  Sum_probs=146.6

Q ss_pred             CeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEccCceeeeEEeecCCceEE
Q 029425           28 DEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLP  107 (193)
Q Consensus        28 ~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~  107 (193)
                      +|++||+.++++|++|+....+.++   .+|.++|+|++|+|.++|+++..+++||+|.++. .|+|++|+.++.+.+++
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-~g~~~~~~~~~~~~~~~   76 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-PGAFATHVRVDARLVVK   76 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-cCcccceEEechhheEe
Confidence            5899999999999999998877652   2478999999999999999999999999999885 58899999999999999


Q ss_pred             CCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC--C
Q 029425          108 VPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN--I  185 (193)
Q Consensus       108 ~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G--~  185 (193)
                      +|+++++.+++.++.++.++|.++....+++++++++|+|++|.+|++++++++.+|++++.+++++++.+.++++|  +
T Consensus        77 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~  156 (293)
T cd05195          77 IPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPV  156 (293)
T ss_pred             CCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCc
Confidence            99999999999899999999999878889999999999998899999999999999999999999999999998888  6


Q ss_pred             cEEecCC
Q 029425          186 RVFIGFG  192 (193)
Q Consensus       186 ~~~~~~~  192 (193)
                      +.+++++
T Consensus       157 ~~~~~~~  163 (293)
T cd05195         157 DHIFSSR  163 (293)
T ss_pred             ceEeecC
Confidence            7777654

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.92  E-value=5.6e-24  Score=166.16  Aligned_cols=156  Identities=34%  Similarity=0.537  Sum_probs=143.3

Q ss_pred             EEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEccCceeeeEEeecCCceEECCCC
Q 029425           32 IKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSG  111 (193)
Q Consensus        32 V~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~  111 (193)
                      ||+.++++|+.|+....+.++    .|.++|+|++|+|+++|+++..|++||+|.++. .|+|++|+.++.+.++++|++
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~   76 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-PGSFATYVRTDARLVVPIPDG   76 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-CCceeeEEEccHHHeEECCCC
Confidence            789999999999998877654    257899999999999999999999999999985 488999999999999999999


Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC--cEEe
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI--RVFI  189 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~--~~~~  189 (193)
                      +++.+++.++.++.++|+++.....++++++++|+|+.|.+|++++++++++|++|+.+++++++.+.++++|+  +.++
T Consensus        77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~  156 (288)
T smart00829       77 LSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIF  156 (288)
T ss_pred             CCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhhee
Confidence            99999999999999999998788889999999999988999999999999999999999999999999999998  7777


Q ss_pred             cCC
Q 029425          190 GFG  192 (193)
Q Consensus       190 ~~~  192 (193)
                      +++
T Consensus       157 ~~~  159 (288)
T smart00829      157 SSR  159 (288)
T ss_pred             eCC
Confidence            754

Enoylreductase in Polyketide synthases.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.92  E-value=2.4e-24  Score=169.44  Aligned_cols=131  Identities=24%  Similarity=0.304  Sum_probs=116.7

Q ss_pred             CCCcceEEEEEEecCCCC------CCCCCCEEEEEc----------------------------------cCceeeeEEe
Q 029425           60 YPGLECSGTILSVGKNVS------RWKVGDQVCALL----------------------------------GGGGYAEKVA   99 (193)
Q Consensus        60 ~lg~e~~G~V~~vG~~~~------~~~~G~~V~~~~----------------------------------~~g~~~~~~~   99 (193)
                      ++|||++|+|+++|+++.      .+++||||+..+                                  .+|+|++|+.
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999998      899999996521                                  1489999999


Q ss_pred             ecCC-ceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchH
Q 029425          100 VPAG-QVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRF  177 (193)
Q Consensus       100 ~~~~-~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~  177 (193)
                      ++++ .++++|+++++++++.+.....++|+++.. ....++++++|+|+ |.+|++++|+|+++|++ |+++.++++|+
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~  158 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEA-AGDLKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRR  158 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHh-ccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            9997 699999999999999888888999999854 45569999999997 99999999999999996 88888899999


Q ss_pred             HHHhhcCCcEEecCC
Q 029425          178 ILCQPFNIRVFIGFG  192 (193)
Q Consensus       178 ~~~~~~G~~~~~~~~  192 (193)
                      +.++++|++.++|++
T Consensus       159 ~~a~~~Ga~~~i~~~  173 (280)
T TIGR03366       159 ELALSFGATALAEPE  173 (280)
T ss_pred             HHHHHcCCcEecCch
Confidence            999999999998864

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=153.45  Aligned_cols=186  Identities=17%  Similarity=0.263  Sum_probs=145.6

Q ss_pred             EEEEcCC--CCC--CceEEEee--c-CCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCc----ceEEEEEE
Q 029425            3 AIVITQP--GSP--EVLQLQEV--E-DPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGL----ECSGTILS   71 (193)
Q Consensus         3 a~~~~~~--~~~--~~~~~~~~--~-~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~----e~~G~V~~   71 (193)
                      .+++...  +.|  ++|.+++.  + ..++++++++||..|.+.+|+.+..++...+..--.|..+|.    .++|+|++
T Consensus         6 qvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~   85 (343)
T KOG1196|consen    6 QVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVID   85 (343)
T ss_pred             EEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEe
Confidence            4555542  222  34444433  3 345799999999999999999987776554432112344443    67899998


Q ss_pred             ecCCCCCCCCCCEEEEEccCceeeeEEeecCCce--EECC--CCCCHHh-HccCcchHHHHHHHHHHhcCCCCCCeEEEE
Q 029425           72 VGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQV--LPVP--SGVSLKD-AAAFPEVACTVWSTVFMTSHLSPGESFLVH  146 (193)
Q Consensus        72 vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~--~~~p--~~~~~~~-aa~~~~~~~~a~~~l~~~~~~~~~~~vli~  146 (193)
                        |+.+++++||.|.++.   +|.+|.++++...  ++++  .+.++.. ..++.++.+|||..+++.+..++|++++|.
T Consensus        86 --S~~~~~~~GD~v~g~~---gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VS  160 (343)
T KOG1196|consen   86 --SGHPNYKKGDLVWGIV---GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVS  160 (343)
T ss_pred             --cCCCCCCcCceEEEec---cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEe
Confidence              6778999999999996   4999998876543  4443  4444444 456889999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCcEEecCCC
Q 029425          147 GGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIRVFIGFGY  193 (193)
Q Consensus       147 ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~~~~~~~~  193 (193)
                      ||+|.+|+++.|+|+.+||+|+.++.+++|...++. +|+|..|||++
T Consensus       161 aAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~  208 (343)
T KOG1196|consen  161 AASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKE  208 (343)
T ss_pred             eccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccC
Confidence            999999999999999999999999999999999985 89999999985

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.85  E-value=3.5e-20  Score=145.14  Aligned_cols=129  Identities=29%  Similarity=0.374  Sum_probs=116.5

Q ss_pred             CCCCCCcceEEEEEEecCCCCCCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcC
Q 029425           57 ASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSH  136 (193)
Q Consensus        57 ~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~  136 (193)
                      +|.++|+|++|+|+++|+++..|++||+|+.+.   .|++|+.++.+.++++|++++..+++.+ .+++++|+++. ..+
T Consensus        20 ~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~~-~~~   94 (277)
T cd08255          20 LPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG---PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGVR-DAE   94 (277)
T ss_pred             CCcccCcceeEEEEEeCCCCCCCCCCCEEEecC---CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHHH-hcC
Confidence            689999999999999999999999999999874   5999999999999999999999888877 78999999984 688


Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcC-CcEEecC
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFN-IRVFIGF  191 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G-~~~~~~~  191 (193)
                      ++++++++|+|+ |.+|++++++++++|++ |+++++++++.+.++++| ++.++++
T Consensus        95 ~~~g~~vlI~g~-g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~  150 (277)
T cd08255          95 PRLGERVAVVGL-GLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAAD  150 (277)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccccc
Confidence            999999999975 99999999999999998 999999999999888888 5555543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.79  E-value=4.4e-19  Score=154.94  Aligned_cols=163  Identities=26%  Similarity=0.350  Sum_probs=142.5

Q ss_pred             CCCCceEEEeecCC---CCCCCeEEEEEeEecCChhhhhhhcCCCCCCC------CCCCCCCcceEEEEEEecCCCCCCC
Q 029425           10 GSPEVLQLQEVEDP---QIKDDEVLIKVEATALNRADTLQRKGSYPPPK------GASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus        10 ~~~~~~~~~~~~~~---~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~------~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |+...++|.+-+..   +..++.-+.-|.|+++|+.|+-+..|+.+...      .....+|.||+|+-..         
T Consensus      1424 GDlsSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd~~--------- 1494 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRDAS--------- 1494 (2376)
T ss_pred             ccccceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccccCC---------
Confidence            34455788877754   34666678999999999999999988865311      2245789999988544         


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                       |.||.++.+--++++.+.++.+.+|.+|.+..++||++.|..+.|+|+||..++..++|++||||+++|++|+++|.+|
T Consensus      1495 -GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiA 1573 (2376)
T KOG1202|consen 1495 -GRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIA 1573 (2376)
T ss_pred             -CcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHH
Confidence             9999999887889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCEEEEEeCCcchHHHHhh
Q 029425          161 KCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      .+.|++|+-++.|.+|++++.+
T Consensus      1574 La~G~~VFTTVGSaEKRefL~~ 1595 (2376)
T KOG1202|consen 1574 LAHGCTVFTTVGSAEKREFLLK 1595 (2376)
T ss_pred             HHcCCEEEEecCcHHHHHHHHH
Confidence            9999999999999999999864

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.76  E-value=2.7e-18  Score=116.66  Aligned_cols=82  Identities=40%  Similarity=0.618  Sum_probs=69.6

Q ss_pred             CCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEc-----------------
Q 029425           27 DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL-----------------   89 (193)
Q Consensus        27 ~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~-----------------   89 (193)
                      ++||+||+.++++|++|++.+.+......+.|.++|||++|+|+++|+++.+|++||+|+..+                 
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            689999999999999999999985444556799999999999999999999999999998743                 


Q ss_pred             ----------cCceeeeEEeecCCceEEC
Q 029425           90 ----------GGGGYAEKVAVPAGQVLPV  108 (193)
Q Consensus        90 ----------~~g~~~~~~~~~~~~~~~~  108 (193)
                                .+|+|++|+.++++.++++
T Consensus        81 c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             CCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                      2599999999999988864

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.21  E-value=5e-06  Score=70.38  Aligned_cols=54  Identities=19%  Similarity=0.147  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE-ecC
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF-IGF  191 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~-~~~  191 (193)
                      ..++++|+|.|+ |.+|+.+++.|+.+|++|++++.++++++.++++|++.+ +|.
T Consensus       162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~  216 (509)
T PRK09424        162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDF  216 (509)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecc
Confidence            357999999998 999999999999999999999999999999999999844 554

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=98.01  E-value=0.00017  Score=57.38  Aligned_cols=138  Identities=12%  Similarity=0.072  Sum_probs=87.0

Q ss_pred             cCCCCC-CCCCCCCCCcceEEEEEEecCCCCCCCCCCEEEEEccCceeeeEEeecCCce---------------------
Q 029425           48 KGSYPP-PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQV---------------------  105 (193)
Q Consensus        48 ~~~~~~-~~~~p~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~---------------------  105 (193)
                      ...+|. ...+..+|-+.+ ++|++  |.++.+.+|.|+.|+.+   .++|+.+.+..+                     
T Consensus        20 W~ffP~~~~~wG~vPvWGf-A~Vve--S~~~~i~vGerlyGy~P---~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~   93 (314)
T PF11017_consen   20 WDFFPASDDGWGIVPVWGF-ATVVE--SRHPGIAVGERLYGYFP---MASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQ   93 (314)
T ss_pred             ceeccCCcccCcccccceE-EEEEe--eCCCCccCccEEEeecc---ccceeEEeccccCCCccccChhhhCcCchhhhc
Confidence            344444 344556666666 45555  78999999999999876   344444432221                     


Q ss_pred             E-ECCCC-----CCHHhHccCcchHHHHHHHHHHhc---CCCCCCeEEEEcCCchHHHHHHHHHH-HC-CCEEEEEeCCc
Q 029425          106 L-PVPSG-----VSLKDAAAFPEVACTVWSTVFMTS---HLSPGESFLVHGGSSGIGTFAIQMGK-CQ-GVRVFVTAGLA  174 (193)
Q Consensus       106 ~-~~p~~-----~~~~~aa~~~~~~~~a~~~l~~~~---~~~~~~~vli~ga~g~~G~~~i~~~~-~~-g~~v~~~~~~~  174 (193)
                      + +++.+     -....-+.+-..+.|+|..- +..   +.-..+.|+|..|++-.++.+...++ .. +.+++.++ |.
T Consensus        94 Y~r~~~d~~y~~~~e~~~~LlrPLf~Tsfll~-d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~  171 (314)
T PF11017_consen   94 YLRVSADPAYDPEREDWQMLLRPLFITSFLLD-DFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SA  171 (314)
T ss_pred             eeecCCCcccCcchhHHHHHHHHHHHHHHHHH-HHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cC
Confidence            0 11111     11222345566778888542 222   12345788999999999999888888 34 45888888 55


Q ss_pred             chHHHHhhcCC-cEEecCCC
Q 029425          175 TRFILCQPFNI-RVFIGFGY  193 (193)
Q Consensus       175 ~~~~~~~~~G~-~~~~~~~~  193 (193)
                      ....+.+++|+ |.++.|++
T Consensus       172 ~N~~Fve~lg~Yd~V~~Yd~  191 (314)
T PF11017_consen  172 RNVAFVESLGCYDEVLTYDD  191 (314)
T ss_pred             cchhhhhccCCceEEeehhh
Confidence            66668899999 68888864

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.73  E-value=0.00016  Score=59.84  Aligned_cols=61  Identities=20%  Similarity=0.153  Sum_probs=51.1

Q ss_pred             HHHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425          126 TVWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       126 ~a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      +.|.++.+..+ .-+|++++|.|+ |.+|+.+++.++.+|++|+++..++.+...++++|++.
T Consensus       187 s~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~  248 (413)
T cd00401         187 SLIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEV  248 (413)
T ss_pred             hhHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEE
Confidence            34555544433 468999999997 99999999999999999999999999999999999843

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.41  E-value=0.00047  Score=58.51  Aligned_cols=49  Identities=20%  Similarity=0.108  Sum_probs=45.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      .++++++|.|+ |.+|++++++++.+|++|++++++.++++.++++|++.
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~  210 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEF  210 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeE
Confidence            35789999997 99999999999999999999999999999999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.37  E-value=0.0014  Score=52.09  Aligned_cols=47  Identities=21%  Similarity=0.193  Sum_probs=41.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .+.+++|+|. |.+|..+++.++.+|++|+++.++.++.+.++++|+.
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~  197 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS  197 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe
Confidence            5899999997 9999999999999999999999998887777777653

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.26  E-value=0.0019  Score=53.72  Aligned_cols=61  Identities=16%  Similarity=0.116  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          124 ACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       124 ~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      ..+.|.++.+..++. .|++++|.|. |.+|..+++.++.+|++|+++..++.+...+...|+
T Consensus       195 ~~s~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~  256 (425)
T PRK05476        195 GESLLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGF  256 (425)
T ss_pred             HhhhHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC
Confidence            345566665443544 8999999997 999999999999999999999988877666555565

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.94  E-value=0.0024  Score=55.37  Aligned_cols=55  Identities=18%  Similarity=0.151  Sum_probs=46.0

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---------------------cchHHHHhhcCCcEEecC
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL---------------------ATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~---------------------~~~~~~~~~~G~~~~~~~  191 (193)
                      ..++|++|+|.|+ |..|+++++.++.+|++|+++.+.                     +.+++.++++|++..+|.
T Consensus       133 ~~~~g~~V~VIGa-GpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~  208 (564)
T PRK12771        133 APDTGKRVAVIGG-GPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV  208 (564)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence            3578999999998 999999999999999999998753                     345677888999877764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.92  E-value=0.0048  Score=51.11  Aligned_cols=60  Identities=18%  Similarity=0.148  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          125 CTVWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       125 ~~a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      -+++.++.+..+ .-.|++++|.|. |.+|..+++.++.+|++|+++..++.+...++..|+
T Consensus       179 ~s~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~  239 (406)
T TIGR00936       179 QSTIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF  239 (406)
T ss_pred             hhHHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC
Confidence            334455544433 368999999997 999999999999999999999888877766666676

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.0052  Score=47.32  Aligned_cols=43  Identities=28%  Similarity=0.321  Sum_probs=37.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      -.+++++|+|++|.+|..++..+...|++|+++.+++++.+.+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~   49 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKEL   49 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3478999999999999999999999999999999988876554

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.66  E-value=0.006  Score=42.73  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=38.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQP  182 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~  182 (193)
                      .+.+++|.|+ |+.|.+++..+...|++ ++++.|+.+|.+.+.+
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~   54 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAE   54 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence            5789999998 99999999999999995 9999999998877653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02494 adenosylhomocysteinase

Probab=96.62  E-value=0.011  Score=49.82  Aligned_cols=57  Identities=16%  Similarity=0.092  Sum_probs=45.2

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          128 WSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       128 ~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      +.++.+..++ -.|++++|.|. |.+|..+++.++.+|++|+++..++.+...+...|+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~  298 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGY  298 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCC
Confidence            4455444333 57999999997 999999999999999999999888777666665665

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.0062  Score=47.27  Aligned_cols=42  Identities=17%  Similarity=0.205  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ++.+++|+|++|.+|..+++.+...|++|+++.+++++.+.+
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~   50 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV   50 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999999988766544

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.0083  Score=45.76  Aligned_cols=47  Identities=32%  Similarity=0.298  Sum_probs=39.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~  185 (193)
                      .+.+++|+|++|.+|..+++.+...|++|+++.++.++.+.+.+ .++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~   55 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGC   55 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC
Confidence            46799999999999999999999999999999998877765543 444

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.0063  Score=47.34  Aligned_cols=43  Identities=16%  Similarity=0.173  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+++++|+|+++++|.+.++.+...|++|+++.++.++.+.+.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   49 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAR   49 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4688999999999999999999999999999999887765443

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.0064  Score=48.19  Aligned_cols=46  Identities=15%  Similarity=0.251  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFN  184 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G  184 (193)
                      ++++++|+|++|++|..+++.+...|++|+++.+++++++.+. +++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~   54 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG   54 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999888776553 344

>PRK08324 short chain dehydrogenase; Validated

Probab=96.59  E-value=0.0047  Score=54.74  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=54.6

Q ss_pred             ceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425           92 GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA  171 (193)
Q Consensus        92 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~  171 (193)
                      .++++|..+++..++.+ +..+.+++.....+          ....-+|++++|+|++|.+|..+++.+...|++|+++.
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~  453 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLAD  453 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            34567776776666655 44444444311000          11223678999999999999999999999999999999


Q ss_pred             CCcchHHHHh
Q 029425          172 GLATRFILCQ  181 (193)
Q Consensus       172 ~~~~~~~~~~  181 (193)
                      ++.++.+.+.
T Consensus       454 r~~~~~~~~~  463 (681)
T PRK08324        454 LDEEAAEAAA  463 (681)
T ss_pred             CCHHHHHHHH
Confidence            9887765543

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.0068  Score=46.75  Aligned_cols=47  Identities=21%  Similarity=0.182  Sum_probs=39.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~  185 (193)
                      ++++++|+|++|.+|..+++.+...|++|+++.+++++.+.+. +++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~   53 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGG   53 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999999877665443 3443

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.0069  Score=48.94  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH----hhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC----QPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~----~~~G~~  186 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.+++++++.+    ++.|.+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~   57 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE   57 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence            468999999999999999999999999999999998877543    345654

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.008  Score=46.29  Aligned_cols=42  Identities=24%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.++.++.+.+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   49 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKL   49 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            478999999999999999999999999999999987766544

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.0082  Score=46.51  Aligned_cols=42  Identities=29%  Similarity=0.380  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++.+|...++.+...|++|+++.+++++.+.+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   48 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASA   48 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988766543

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.0088  Score=45.29  Aligned_cols=39  Identities=23%  Similarity=0.354  Sum_probs=34.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      +++++||+|++|.+|..+++.+...|++|+++.++.++.
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~   44 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPL   44 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhH
Confidence            368999999999999999999988899999999876653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.46  E-value=0.0088  Score=46.17  Aligned_cols=43  Identities=30%  Similarity=0.385  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      ++.++||+|++|.+|..+++.+...|++|+++.++.++.+.+.
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~   53 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAA   53 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            4689999999999999999999999999999999887665443

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.0089  Score=47.38  Aligned_cols=42  Identities=29%  Similarity=0.324  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|++|++|...++.+...|++|+++.++.++.+.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV   80 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            357899999999999999999988999999999988776544

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.45  E-value=0.0076  Score=48.48  Aligned_cols=42  Identities=21%  Similarity=0.175  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .|.+++|+||++++|...+..+...|++|+++.+++++++.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            478999999999999998888888899999999998887654

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.0093  Score=46.36  Aligned_cols=41  Identities=27%  Similarity=0.276  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      ++.+++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~   48 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDA   48 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            57899999999999999999999999999999988776543

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.009  Score=46.10  Aligned_cols=44  Identities=30%  Similarity=0.312  Sum_probs=38.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      -++.++||+|++|.+|..+++.+...|++|+++.++++..+.+.
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~   52 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA   52 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            46789999999999999999999999999999999877665544

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.0093  Score=47.74  Aligned_cols=42  Identities=19%  Similarity=0.214  Sum_probs=36.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|+++++|..++..+...|++|+++.++.++.+.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~   54 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAA   54 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999998888999999999988766443

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.42  E-value=0.0096  Score=45.85  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~   49 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAA   49 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            46899999999999999999998899999999988776543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.42  E-value=0.01  Score=43.21  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      ..+++|+|+ |.+|..++.+++.+|+++++.....++.+.++.+++.
T Consensus        20 p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~   65 (168)
T PF01262_consen   20 PAKVVVTGA-GRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY   65 (168)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE
T ss_pred             CeEEEEECC-CHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc
Confidence            368899997 9999999999999999999999999988888887774

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.41  E-value=0.0098  Score=51.32  Aligned_cols=48  Identities=17%  Similarity=0.081  Sum_probs=41.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ...+.+.|+++||+|++|.+|..+++.+...|++|++++++.++.+.+
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l  120 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL  120 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            344567889999999999999999999999999999999998877544

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.01  Score=45.62  Aligned_cols=41  Identities=29%  Similarity=0.338  Sum_probs=35.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +.+++|+|++|.+|..+++.+...|++|+++.++.++.+.+
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~   48 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAV   48 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57899999999999999999999999999999887765443

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.40  E-value=0.01  Score=45.68  Aligned_cols=40  Identities=23%  Similarity=0.163  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      ++.++||+|++|.+|..+++.+...|++|+++.+++++.+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~   45 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGAN   45 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence            4689999999999999999999999999999999886554

>PRK06196 oxidoreductase; Provisional

Probab=96.34  E-value=0.011  Score=47.26  Aligned_cols=42  Identities=26%  Similarity=0.293  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|++|.+|..++..+...|++|+++.++.++.+.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~   66 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREA   66 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467999999999999999998888999999999988766544

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.012  Score=45.48  Aligned_cols=42  Identities=24%  Similarity=0.192  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.+++++.+.+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~   47 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERA   47 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467899999999999999999999999999999987766544

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=96.32  E-value=0.026  Score=44.73  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=48.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG  190 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~  190 (193)
                      ..+.++||+ .+|-+.+|++|..+..+++.+|++++++..   |.+|.+.++.+|+..++.
T Consensus        55 ~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t  114 (300)
T COG0031          55 KRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILT  114 (300)
T ss_pred             HcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEc
Confidence            567799998 556788899999999999999999888876   778999999999965553

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.012  Score=45.20  Aligned_cols=40  Identities=30%  Similarity=0.328  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      .+.+++|+|++|.+|..+++.+...|++|+++.+++++.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~   45 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGE   45 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            4689999999999999999988889999999999877654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.29  E-value=0.027  Score=44.67  Aligned_cols=46  Identities=22%  Similarity=0.256  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+++++|.|. |.+|..++..++.+|++|++..++.++...+.++|+
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~  195 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITEMGL  195 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC
Confidence            4789999997 999999999999999999999998887655544443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.27  E-value=0.013  Score=44.99  Aligned_cols=43  Identities=23%  Similarity=0.261  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .-++.+++|+|++|.+|..+++.+...|++|+++.++.++.+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~   51 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEA   51 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHH
Confidence            4478899999999999999999888899999999988765433

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=96.26  E-value=0.03  Score=44.83  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=50.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+.||.++||-.-+|++|..+.-++...|+++|++..   +.+|...++++|+..+.
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~  155 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIIL  155 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEe
Confidence            4577899999999999999999999999999999998876   67788999999996554

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.26  E-value=0.02  Score=45.90  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             eEECCCCCCHHhHccCcchHHHHHHHHHHhcCC---CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchH-HH
Q 029425          105 VLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL---SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRF-IL  179 (193)
Q Consensus       105 ~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~---~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~-~~  179 (193)
                      .++.|+.+..+.++.. .+...++.++......   -++.+++|.|+ |.+|..+++.++..|+ +|+++.++.++. ++
T Consensus       141 a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l  218 (311)
T cd05213         141 AIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEEL  218 (311)
T ss_pred             HHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            4566777776666544 3455565565322221   36899999997 9999999999998775 788999988875 55


Q ss_pred             HhhcCCc
Q 029425          180 CQPFNIR  186 (193)
Q Consensus       180 ~~~~G~~  186 (193)
                      ++++|+.
T Consensus       219 a~~~g~~  225 (311)
T cd05213         219 AKELGGN  225 (311)
T ss_pred             HHHcCCe
Confidence            6678873

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.26  E-value=0.0093  Score=46.95  Aligned_cols=42  Identities=29%  Similarity=0.357  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++.++|+||++++|..++.-.-..|++++.+++..++++.+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v   52 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERV   52 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHH
Confidence            478999999999999998888888899999999988877666

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.015  Score=45.08  Aligned_cols=44  Identities=25%  Similarity=0.329  Sum_probs=36.9

Q ss_pred             CCCCCeEEEEcCCc-hHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          137 LSPGESFLVHGGSS-GIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       137 ~~~~~~vli~ga~g-~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +..+++++|+|++| ++|..+++.+...|++|+++.+++++.+..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~   58 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGET   58 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            34578999999986 899999999999999999998887766544

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.013  Score=47.31  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|++|.+|..+++.+...|++|+++.+++++.+.+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~   48 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEAL   48 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            467899999999999999999999999999999988776543

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.014  Score=44.82  Aligned_cols=44  Identities=25%  Similarity=0.340  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ++.+++|+|++|.+|..+++.+...|++|+++.++.+..+...+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~   57 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQ   57 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46799999999999999999998899999999988765444433

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.23  E-value=0.051  Score=40.32  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|.|++|.+|..++..+...|++|+++.++.++.+.+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l   68 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKA   68 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            567999999999999998888888899999999988776554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.015  Score=45.00  Aligned_cols=42  Identities=26%  Similarity=0.362  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++.+|...++.+...|++|+++.+++++.+.+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEAL   47 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            368999999999999999999989999999999988766553

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.012  Score=45.41  Aligned_cols=41  Identities=22%  Similarity=0.194  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      ++.+++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~   46 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEF   46 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHH
Confidence            46799999999999999999999999999999988776533

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.20  E-value=0.021  Score=46.98  Aligned_cols=45  Identities=22%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI  185 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~  185 (193)
                      +.+++|.|+ |.+|+.+++.++.+|++|++++++.++.+.+.+ +|.
T Consensus       167 ~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~  212 (370)
T TIGR00518       167 PGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG  212 (370)
T ss_pred             CceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc
Confidence            456889997 999999999999999999999998887766643 443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.016  Score=44.24  Aligned_cols=42  Identities=26%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ++.+++|+|++|.+|..++..+...|++|+++.+++++.+.+
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL   47 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            468899999999999999999999999999998887765443

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.014  Score=46.35  Aligned_cols=40  Identities=18%  Similarity=0.238  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      .+.+++|+|++|++|..+++.+...|++|+++.++.++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~   54 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK   54 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5689999999999999999988888999999998877654

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.019  Score=44.37  Aligned_cols=40  Identities=23%  Similarity=0.205  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcch
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATR  176 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~  176 (193)
                      +.++.+++|+|++|++|...++.+... |++|+++.+++++
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~   45 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP   45 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence            456789999999999999999877776 4899999998775

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.15  E-value=0.017  Score=44.47  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+.+++|+|+++.+|..++..+...|++|+++.+++++.+.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~   50 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA   50 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence            47899999999999999999888899999999998776544

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.13  E-value=0.017  Score=44.48  Aligned_cols=41  Identities=24%  Similarity=0.341  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .++++||+|+++.+|..++..+...|++|+++.+++++.+.
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~   48 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL   48 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            46789999999999999999999999999999988776544

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.13  E-value=0.024  Score=47.49  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             CCCCcceEEEEEEecCCCCCCCCCCEEE-EEc----------------cCceeeeEEeecCCceEECCCCCCHHhHccCc
Q 029425           59 PYPGLECSGTILSVGKNVSRWKVGDQVC-ALL----------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFP  121 (193)
Q Consensus        59 ~~lg~e~~G~V~~vG~~~~~~~~G~~V~-~~~----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~  121 (193)
                      ..-|+|+++.+.+|+++....-+|+.-+ +-+                -++.|+..+        +.|+.+..+ .....
T Consensus        90 ~~~g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~--------~~~k~v~~~-t~i~~  160 (423)
T PRK00045         90 VHEGEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAF--------SVAKRVRTE-TGIGA  160 (423)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH--------HHHhhHhhh-cCCCC
Confidence            3579999999999999887666666532 111                012333222        333333222 22222


Q ss_pred             chHHHHHHHHHHhcC---CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHH-HHhhcCC
Q 029425          122 EVACTVWSTVFMTSH---LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFI-LCQPFNI  185 (193)
Q Consensus       122 ~~~~~a~~~l~~~~~---~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~-~~~~~G~  185 (193)
                      .+...++.++.....   -.++++++|.|+ |.+|.++++.++..|+ +|+++.++.++.. +++++|+
T Consensus       161 ~~~Sv~~~Av~~a~~~~~~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~  228 (423)
T PRK00045        161 GAVSVASAAVELAKQIFGDLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG  228 (423)
T ss_pred             CCcCHHHHHHHHHHHhhCCccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence            344555555532221   256789999997 9999999999999998 8999999988865 5556775

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.018  Score=44.84  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      ++.+++|+|++|.+|..+++.+.+.|++|+++.++.++.+.
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~   46 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAA   46 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            36799999999999999999999999999999988766543

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.06  E-value=0.059  Score=45.56  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             HHHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          126 TVWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       126 ~a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      +.+.++.+..+ .-.|++++|.|. |.+|..+++.++.+|++|+++.+++.+...+...|+
T Consensus       239 s~~d~~~R~~~~~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~  298 (476)
T PTZ00075        239 SLIDGIFRATDVMIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY  298 (476)
T ss_pred             HHHHHHHHhcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc
Confidence            33344434333 347899999997 999999999999999999999877666544444454

>PRK09242 tropinone reductase; Provisional

Probab=96.04  E-value=0.02  Score=44.11  Aligned_cols=42  Identities=26%  Similarity=0.302  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++.+|..++..+...|++|+++.++.++.+.+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~   49 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQA   49 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999999988766544

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.01  E-value=0.022  Score=43.91  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+.++||+|+++.+|...++.+...|++|+++.++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999999999999999999999887

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.01  E-value=0.024  Score=48.39  Aligned_cols=50  Identities=20%  Similarity=0.166  Sum_probs=42.6

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      +.++++++|.|. |..|++++++++..|++|++++..+++.+.++++|+..
T Consensus         9 ~~~~~~v~V~G~-G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~   58 (488)
T PRK03369          9 LLPGAPVLVAGA-GVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVAT   58 (488)
T ss_pred             ccCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEE
Confidence            457889999997 99999999999999999999997766666677778743

>PLN02565 cysteine synthase

Probab=96.00  E-value=0.06  Score=43.41  Aligned_cols=57  Identities=23%  Similarity=0.338  Sum_probs=47.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+.+|.+.+|..++|+.|+++...++.+|++++++..   ++.|.+.++.+|+..++
T Consensus        59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~  118 (322)
T PLN02565         59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVL  118 (322)
T ss_pred             HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Confidence            4455678877788888899999999999999999888776   56788999999996554

>PRK04148 hypothetical protein; Provisional

Probab=95.98  E-value=0.038  Score=38.60  Aligned_cols=50  Identities=12%  Similarity=0.053  Sum_probs=41.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      .++.++++.|. | .|...+..+..+|.+|++++.+++..+.+++.+...+.
T Consensus        15 ~~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~   64 (134)
T PRK04148         15 GKNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFV   64 (134)
T ss_pred             ccCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEE
Confidence            45678999996 7 88766767778899999999999999999888875544

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.97  E-value=0.024  Score=43.15  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+.+++|+|++|.+|..++..+...|++|+++.+++++.+.
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~   46 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKA   46 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            35789999999999999999988999999999998766543

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.97  E-value=0.026  Score=41.43  Aligned_cols=45  Identities=20%  Similarity=0.124  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN  184 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G  184 (193)
                      .|.++.|+|. |.+|..+++.++.+|++|+...++........+.+
T Consensus        35 ~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   35 RGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             TTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred             CCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence            5889999996 99999999999999999999999887655344444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.96  E-value=0.023  Score=44.37  Aligned_cols=41  Identities=15%  Similarity=0.166  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+.+++|+|++|.+|...+..+...|++|+++.+++++.+.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~   49 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEA   49 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46889999999999999999999999999999988765543

>PRK05717 oxidoreductase; Validated

Probab=95.93  E-value=0.023  Score=43.72  Aligned_cols=41  Identities=24%  Similarity=0.157  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+.+++|+|++|.+|..++..+...|++|+++.++.++.+.
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~   49 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSK   49 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            46789999999999999999998899999999877665444

>PLN03013 cysteine synthase

Probab=95.83  E-value=0.065  Score=44.83  Aligned_cols=57  Identities=25%  Similarity=0.368  Sum_probs=48.2

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +.+.+++|.+.+|...+|+.|.++..+++.+|+++++++.   +++|.+.++.+|+..++
T Consensus       167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~  226 (429)
T PLN03013        167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL  226 (429)
T ss_pred             HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEE
Confidence            4566788877778888899999999999999999888865   66788999999997654

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.83  E-value=0.028  Score=44.20  Aligned_cols=43  Identities=33%  Similarity=0.409  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+.+++|+|++.++|.+.+..+...|++|+++.+++++.+...
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~   49 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETA   49 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5788999999999999999999999999999999998865543

>PLN02253 xanthoxin dehydrogenase

Probab=95.83  E-value=0.028  Score=43.90  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~   57 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQN   57 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            36789999999999999999888899999999887665443

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.81  E-value=0.012  Score=49.49  Aligned_cols=59  Identities=12%  Similarity=0.120  Sum_probs=46.6

Q ss_pred             HhcCCCCCCeEE----EEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc-EEecC
Q 029425          133 MTSHLSPGESFL----VHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR-VFIGF  191 (193)
Q Consensus       133 ~~~~~~~~~~vl----i~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~-~~~~~  191 (193)
                      .+.++++|+.++    ++|++|.+|.+++|+++..|++|+.+.+.+.+....+..+.+ .++|.
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~d~   90 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAGWGDRFGALVFDA   90 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccCcCCcccEEEEEC
Confidence            345678888888    888889999999999999999999988776655555556665 45554

>PLN02778 3,5-epimerase/4-reductase

Probab=95.81  E-value=0.043  Score=43.62  Aligned_cols=53  Identities=15%  Similarity=0.129  Sum_probs=39.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH----HHhhcCCcEEecC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI----LCQPFNIRVFIGF  191 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~----~~~~~G~~~~~~~  191 (193)
                      ...++||+|++|.+|..+++.+...|.+|+......+..+    .++..+.|.+|+.
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~   64 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNA   64 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEEC
Confidence            4468999999999999999999999999876543333222    3345688888864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.80  E-value=0.094  Score=39.30  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=39.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~  185 (193)
                      .|.+++|+|. |.+|..+++.+...|++|+++++++++.+.+.+ +|+
T Consensus        27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence            5689999997 999999999999999999999988887776654 465

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.80  E-value=0.027  Score=43.44  Aligned_cols=37  Identities=24%  Similarity=0.385  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~   43 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL   43 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH
Confidence            3678999999999999999999999999999988754

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.042  Score=42.43  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++++|+|++|++|...++.+...|++|+++.+++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            367999999999999999999999999999998875

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.76  E-value=0.032  Score=42.98  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|+++.+|..++..+...|++++++.+++++.+.+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~   51 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHV   51 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999999887765443

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.65  E-value=0.06  Score=41.45  Aligned_cols=37  Identities=24%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+.+++|+|+++.+|..+++.+...|++|+++.++++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~   43 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD   43 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4679999999999999999999999999999988654

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=95.61  E-value=0.092  Score=43.18  Aligned_cols=57  Identities=18%  Similarity=0.328  Sum_probs=48.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++||.+.+|...+|+.|.++..+++.+|++.+++..   +.+|...++.+|++.++
T Consensus       103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~  162 (368)
T PLN02556        103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVL  162 (368)
T ss_pred             HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            4566788887888888999999999999999999888865   35788999999997654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.59  E-value=0.039  Score=42.77  Aligned_cols=42  Identities=19%  Similarity=0.113  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|+++.+|..++..+...|++|+++.+++++.+.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~   50 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKG   50 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            467899999999999999988888999999999887765443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.57  E-value=0.08  Score=41.04  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=59.2

Q ss_pred             CCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhc-CCCCCCeEEEEcCCchHHHHHH
Q 029425           79 WKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS-HLSPGESFLVHGGSSGIGTFAI  157 (193)
Q Consensus        79 ~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~vli~ga~g~~G~~~i  157 (193)
                      +++|++++..+.   |.++.. +....+.+++++.+..+. .   ..|.. ++.... ...++++++-.|+ |. |..++
T Consensus        67 ~~~g~~~~i~p~---~~~~~~-~~~~~i~i~p~~afgtg~-h---~tt~~-~l~~l~~~~~~~~~VLDiGc-Gs-G~l~i  135 (250)
T PRK00517         67 IRIGDRLWIVPS---WEDPPD-PDEINIELDPGMAFGTGT-H---PTTRL-CLEALEKLVLPGKTVLDVGC-GS-GILAI  135 (250)
T ss_pred             EEEcCCEEEECC---CcCCCC-CCeEEEEECCCCccCCCC-C---HHHHH-HHHHHHhhcCCCCEEEEeCC-cH-HHHHH
Confidence            678988776654   555543 556677887776655432 1   12222 222222 2568899999996 65 88777


Q ss_pred             HHHHHCCC-EEEEEeCCcchHHHHhh
Q 029425          158 QMGKCQGV-RVFVTAGLATRFILCQP  182 (193)
Q Consensus       158 ~~~~~~g~-~v~~~~~~~~~~~~~~~  182 (193)
                      .+++ .|+ +|+.++.++...+.+++
T Consensus       136 ~~~~-~g~~~v~giDis~~~l~~A~~  160 (250)
T PRK00517        136 AAAK-LGAKKVLAVDIDPQAVEAARE  160 (250)
T ss_pred             HHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            6554 566 59999999888877654

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.042  Score=42.92  Aligned_cols=40  Identities=28%  Similarity=0.233  Sum_probs=34.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      ...+++|+|++|.+|..+++.+...|++|+++.++.++.+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~   48 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCE   48 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            3468999999999999999999889999999988776554

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.53  E-value=0.038  Score=42.58  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=34.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      +.+++|+|++|.+|..+++.+...|++|+++.++.++...
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   56 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKT   56 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence            5789999999999999999888889999999888766543

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.031  Score=43.07  Aligned_cols=36  Identities=36%  Similarity=0.475  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ++++++|+|++|.+|...++.+...|++|+++.++.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~   43 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSR   43 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence            478999999999999999999988999999998764

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.52  E-value=0.039  Score=44.29  Aligned_cols=43  Identities=26%  Similarity=0.265  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+.+++|+|+++++|...+..+...|++|++.+|+.++.+.+.
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~   76 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAK   76 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            4679999999999999999999999999999999987665553

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.51  E-value=0.06  Score=41.47  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ++++++|+|+++++|.++++.+...|++|+++.+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            468999999999999999999999999999887654

>PLN02686 cinnamoyl-CoA reductase

Probab=95.47  E-value=0.04  Score=45.14  Aligned_cols=44  Identities=16%  Similarity=0.074  Sum_probs=36.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      ..+++|||+|++|.+|..++..+...|++|+++.++.++.+.++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~   94 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR   94 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45789999999999999999999999999998887766554443

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.39  E-value=0.046  Score=42.31  Aligned_cols=38  Identities=21%  Similarity=0.061  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+++++|+|++  +++|.++++.+...|++|+++.++++.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~   48 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA   48 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence            46899999997  489999999988899999999887543

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=95.35  E-value=0.048  Score=45.41  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      .+++++|+|++|++|.+.++.+...|++|+++.+++++.+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            3679999999999999999988889999999998776553

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.34  E-value=0.05  Score=41.96  Aligned_cols=44  Identities=25%  Similarity=0.082  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      .+++++|+|++  +++|.++++.+...|++|+++.++++..+.+++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~   51 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK   51 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh
Confidence            47899999998  699999999988899999999877443333333

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.32  E-value=0.045  Score=42.80  Aligned_cols=37  Identities=19%  Similarity=0.083  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSS--GIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g--~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +++++||+|+++  ++|.+.++.+...|++|++..++++
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~   44 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA   44 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH
Confidence            468999999975  9999999999899999999887653

>PRK08303 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.055  Score=43.19  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            46899999999999999999999999999999886

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.28  E-value=0.13  Score=42.95  Aligned_cols=116  Identities=16%  Similarity=0.157  Sum_probs=75.1

Q ss_pred             CCCCcceEEEEEEecCCCCCCCCCCEEE-----------------EEccCceeeeEEeecCCceEE---C-CCCCCHHhH
Q 029425           59 PYPGLECSGTILSVGKNVSRWKVGDQVC-----------------ALLGGGGYAEKVAVPAGQVLP---V-PSGVSLKDA  117 (193)
Q Consensus        59 ~~lg~e~~G~V~~vG~~~~~~~~G~~V~-----------------~~~~~g~~~~~~~~~~~~~~~---~-p~~~~~~~a  117 (193)
                      ..-|.|+++.+.+|+++....-+|+.-+                 +..-++.|++++.+++ .+..   + +..++...+
T Consensus        88 ~~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~  166 (417)
T TIGR01035        88 ILTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISSA  166 (417)
T ss_pred             hcCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHHH
Confidence            3578888999999998877666665532                 1111367777777665 3332   2 222232222


Q ss_pred             ccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHH-HHhhcCC
Q 029425          118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFI-LCQPFNI  185 (193)
Q Consensus       118 a~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~-~~~~~G~  185 (193)
                      |        .-.+. .....-++++++|.|+ |.+|..+++.++..| .+|+++.++.++.. +++++|.
T Consensus       167 A--------v~la~-~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~  226 (417)
T TIGR01035       167 A--------VELAE-RIFGSLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG  226 (417)
T ss_pred             H--------HHHHH-HHhCCccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            1        11122 2223356799999997 999999999999999 58999999888754 5556665

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.27  E-value=0.12  Score=40.93  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ  181 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~  181 (193)
                      .++++++|.|| |+.+.+++..+...|+ +++++.|+.+|.+.+.
T Consensus       124 ~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La  167 (283)
T COG0169         124 VTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELA  167 (283)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            35899999998 9999999999999996 8999999999887774

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.25  E-value=0.059  Score=43.74  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=36.1

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      +-..+.++||+|++|.+|..+++.+...|.+|+++.++.++..
T Consensus         6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~   48 (353)
T PLN02896          6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL   48 (353)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            3456779999999999999999999999999999887765443

>PRK06484 short chain dehydrogenase; Validated

Probab=95.24  E-value=0.051  Score=46.46  Aligned_cols=47  Identities=17%  Similarity=0.162  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~  185 (193)
                      .+++++|+|+++++|...++.+...|++|+++.+++++.+.+.+ +|.
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~  315 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGD  315 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC
Confidence            46789999999999999999999999999999998887776654 443

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.15  E-value=0.058  Score=41.84  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSS--GIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g--~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++++|+|+++  ++|.++++.+...|++|++..+++
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~   44 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE   44 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch
Confidence            468899999986  799999888888899999888764

>PRK06720 hypothetical protein; Provisional

Probab=95.14  E-value=0.084  Score=38.44  Aligned_cols=40  Identities=30%  Similarity=0.300  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      .+.+++|+|+++++|...+..+...|++|+++.++++..+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4679999999999999999988888999999998766553

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.12  E-value=0.3  Score=35.55  Aligned_cols=68  Identities=13%  Similarity=0.057  Sum_probs=44.3

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSG-IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~-~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      |.....+...+.....--.+.+++|.|+ |. +|..++..++..|++|+++.++.+++... =..+|.+|.
T Consensus        25 p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~-l~~aDiVIs   93 (168)
T cd01080          25 PCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVTVCHSKTKNLKEH-TKQADIVIV   93 (168)
T ss_pred             CChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEEEEECCchhHHHH-HhhCCEEEE
Confidence            3333344433433333347899999998 65 69999999999999999999876544321 134566654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=95.09  E-value=0.061  Score=43.01  Aligned_cols=39  Identities=15%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGG--SSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga--~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      .|+++||+|+  ++++|.++++.+...|++|++ .+..++++
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~   48 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALN   48 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhh
Confidence            4789999999  799999999999999999998 55545443

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.07  E-value=0.067  Score=41.35  Aligned_cols=39  Identities=23%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~  177 (193)
                      ++++++|+|+++++|..++..+...|++|+++.+ ++++.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~   46 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEA   46 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence            4689999999999999999999999999988764 34433

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.02  E-value=0.16  Score=40.03  Aligned_cols=43  Identities=16%  Similarity=0.118  Sum_probs=36.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHh
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQ  181 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~  181 (193)
                      ..+.+++|+|+ |++|.+++..+...| .+|+++.|+.++.+.+.
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~  164 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELA  164 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            35678999997 999999999999999 58999999988775553

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.98  E-value=0.1  Score=40.18  Aligned_cols=44  Identities=25%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc-chHHHHhh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA-TRFILCQP  182 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~-~~~~~~~~  182 (193)
                      .+.+++|+|++|.+|..+++.+...|++|++..+.. +..+.+++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~   50 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELRE   50 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHh
Confidence            367899999999999999999998999998876543 33344433

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.98  E-value=0.16  Score=40.21  Aligned_cols=42  Identities=19%  Similarity=0.117  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~  181 (193)
                      .+.+++|.|+ |+.|.+++..+...|+ +++++.++.+|.+.+.
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            4578999997 9999999999999998 7999999988876553

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.96  E-value=0.17  Score=39.71  Aligned_cols=44  Identities=14%  Similarity=0.117  Sum_probs=36.4

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ....+++++|+|+ |++|.+.+..+...|++|+++.++.++.+.+
T Consensus       113 ~~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       113 PLRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEEL  156 (270)
T ss_pred             CCccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3345789999998 9999999988888899999999988776544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.92  E-value=0.069  Score=43.34  Aligned_cols=48  Identities=15%  Similarity=0.115  Sum_probs=37.1

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      |+|--|+....++ ..+|||+|++|-+|..++..+...|.+|+++++..
T Consensus         2 ~~~~~~~~~~~~~-~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181          2 TAYEELRTKLVLA-PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             chhhhhhhccccc-CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3454443334443 46899999999999999999999999999998743

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=94.90  E-value=0.066  Score=41.46  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+.+++|+|++|.+|..+++.+...|++|+++.+++++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~   45 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD   45 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            46789999999999999999999999999988876543

>PLN00011 cysteine synthase

Probab=94.86  E-value=0.24  Score=39.95  Aligned_cols=57  Identities=19%  Similarity=0.329  Sum_probs=45.6

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +.+.+.++...+|..++|+.|+++...++.+|.+.+++..   ++.+.+.++.+|++.++
T Consensus        61 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~  120 (323)
T PLN00011         61 DKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHL  120 (323)
T ss_pred             HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence            5566778854556678899999999999999999888876   34588888999997654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.85  E-value=0.1  Score=44.22  Aligned_cols=52  Identities=19%  Similarity=0.225  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc---------------------chHHHHhhcCCcEEecC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA---------------------TRFILCQPFNIRVFIGF  191 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~---------------------~~~~~~~~~G~~~~~~~  191 (193)
                      ++++++|+|+ |..|+.++..++..|.+|+++.+.+                     ...+.++++|++..+|.
T Consensus       140 ~~~~V~IIG~-GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~  212 (467)
T TIGR01318       140 TGKRVAVIGA-GPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC  212 (467)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence            5789999998 9999999999999999999887654                     24567788998766553

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02427 UDP-apiose/xylose synthase

Probab=94.84  E-value=0.075  Score=43.72  Aligned_cols=44  Identities=9%  Similarity=-0.004  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHH
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFIL  179 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~  179 (193)
                      +.-+..+|||+|++|.+|..+++.+... |.+|++++++.++...
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~   54 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKH   54 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhh
Confidence            3344568999999999999999988887 5899999876654433

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.81  E-value=0.2  Score=39.44  Aligned_cols=44  Identities=11%  Similarity=0.070  Sum_probs=37.0

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      ....+++++|.|+ |+.+.+++..+...|+ +++++.|+.++.+.+
T Consensus       118 ~~~~~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        118 QVPPDLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CCCCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            3445678999997 9999999999999998 699999998887765

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.77  E-value=0.1  Score=40.35  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ++++++|+|+++.+|...++.+...|++++++.++.
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~   41 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSD   41 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence            578999999999999999999999999998887743

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.72  E-value=0.17  Score=34.01  Aligned_cols=43  Identities=19%  Similarity=0.115  Sum_probs=37.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      ++|.|. |.+|..+++.++..+.+|++++.++++.+.+++.|..
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~   43 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVE   43 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSE
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccc
Confidence            578887 9999999999999777999999999999999998864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.71  E-value=0.086  Score=41.26  Aligned_cols=36  Identities=17%  Similarity=0.093  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++++|+|++  +++|...++.+...|++|+++.+++
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~   46 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD   46 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch
Confidence            46799999996  7999999999989999999887653

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.68  E-value=0.085  Score=40.85  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+++++|+|++  +++|.++++.+...|++|+++.++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence            46899999986  799999999888899999988654

>TIGR01139 cysK cysteine synthase A

Probab=94.68  E-value=0.34  Score=38.55  Aligned_cols=56  Identities=18%  Similarity=0.301  Sum_probs=43.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +.+.+.+|+++ |..++|+.|.++...++.+|++.+++..   ++.+.+.++.+|++.++
T Consensus        50 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~  108 (298)
T TIGR01139        50 KRGLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVL  108 (298)
T ss_pred             HcCCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEE
Confidence            34455666665 6677799999999999999998877776   35578888999997654

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=94.65  E-value=0.41  Score=37.81  Aligned_cols=55  Identities=22%  Similarity=0.269  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      .+...+....+++||+++|=+|  .+=|.+++-+|+..|++|+.++-|+++.+.+++
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiG--CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~  113 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIG--CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK  113 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeC--CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH
Confidence            3444455778999999999998  567899999999999999999999998877754

>PRK07201 short chain dehydrogenase; Provisional

Probab=94.52  E-value=0.098  Score=46.05  Aligned_cols=41  Identities=29%  Similarity=0.329  Sum_probs=36.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +.+++|+|++|++|..++..+...|++|+++.+++++.+.+
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~  411 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDEL  411 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            57899999999999999998888999999999988776544

>PRK06128 oxidoreductase; Provisional

Probab=94.50  E-value=0.12  Score=40.93  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .++++||+|+++.+|..++..+...|++|+++.++.
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~   89 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPE   89 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence            467999999999999999999999999998876543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=94.48  E-value=0.081  Score=41.66  Aligned_cols=50  Identities=22%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+.+..++++|++||=+|+  +-|..++.+++..|++|..++-|+++.++++
T Consensus        53 ~~~~~~~l~~G~~vLDiGc--GwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~  102 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIGC--GWGGLAIYAAERYGCHVTGITLSEEQAEYAR  102 (273)
T ss_dssp             HHHTTTT--TT-EEEEES---TTSHHHHHHHHHH--EEEEEES-HHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHcCcEEEEEECCHHHHHHHH
Confidence            3447788999999999984  4788899999999999999999999988875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11761 cysM cysteine synthase B; Provisional

Probab=94.48  E-value=0.34  Score=38.56  Aligned_cols=57  Identities=12%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG  190 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~  190 (193)
                      ..+.+.++++++. .++|+.|.++...++.+|.+++++..   +++|.+.++.+|+..++.
T Consensus        56 ~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~  115 (296)
T PRK11761         56 KRGEIKPGDTLIE-ATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILV  115 (296)
T ss_pred             HcCCCCCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence            4455667777555 56799999999999999998888776   457888999999976653

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=94.47  E-value=0.1  Score=46.37  Aligned_cols=42  Identities=19%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|.+|..+++.+...|++|+++.++.++.+.+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~  454 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAV  454 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            368999999999999999999988999999999987765443

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.46  E-value=0.13  Score=40.60  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ++.++||+|++|.+|..++..+...|++|+++.++++
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~   81 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH   81 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4678999999999999999988889999999887653

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.39  E-value=0.48  Score=37.56  Aligned_cols=53  Identities=15%  Similarity=0.090  Sum_probs=39.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      -.|.+++|.|+++.+|.....++...|++|++.-+....+...- .++|.+++.
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~-~~aDIvI~A  209 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELV-KQADIIVGA  209 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHh-ccCCEEEEc
Confidence            46889999998556999999999999998887776333222111 478888874

>PRK05855 short chain dehydrogenase; Validated

Probab=94.29  E-value=0.12  Score=44.46  Aligned_cols=42  Identities=21%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.++||+|++|++|..+++.+...|++|+++.++.++.+.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~  355 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERT  355 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            357899999999999999999888999999999988776543

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=94.29  E-value=0.13  Score=40.93  Aligned_cols=44  Identities=18%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      +.|++.+|+||+.++|.+.+.-+-+.|.+|+++.|+++|++...
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~   90 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVA   90 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            45789999999999997755444448999999999999997663

>PRK09134 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.16  Score=39.09  Aligned_cols=35  Identities=23%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+.+++|+|++|.+|..+++.+...|++|+++.+.
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~   42 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNR   42 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999999999998899999887654

>PLN02214 cinnamoyl-CoA reductase

Probab=94.24  E-value=0.11  Score=42.01  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      ++.+++|+|++|.+|..++..+...|.+|++++++.++
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~   46 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD   46 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            56789999999999999999999999999999887654

>PRK07985 oxidoreductase; Provisional

Probab=94.23  E-value=0.14  Score=40.61  Aligned_cols=35  Identities=31%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+++++|+|+++.+|..+++.+...|++|+++.++
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~   82 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP   82 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence            46799999999999999999999999999987654

>TIGR01138 cysM cysteine synthase B

Probab=94.21  E-value=0.46  Score=37.70  Aligned_cols=56  Identities=13%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---cchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL---ATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~---~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+.+++++ |..++|+.|.++..+++.+|.+.+++...   +.|.+.++.+|++.++
T Consensus        52 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  110 (290)
T TIGR01138        52 KRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELIL  110 (290)
T ss_pred             HcCCCCCCCEE-EEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            34555667665 44677999999999999999998888763   4688899999997554

Alternate name: O-acetylserine (thiol)-lyase

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=94.19  E-value=0.24  Score=35.80  Aligned_cols=46  Identities=17%  Similarity=0.125  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-RFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-~~~~~~~~G~  185 (193)
                      .+++|.|+|- |..|.+..+-+|..|.+|++..+... ..+.+++.|+
T Consensus         3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf   49 (165)
T PF07991_consen    3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF   49 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC
Confidence            4689999997 99999999999999999999998877 7888888887

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.17  E-value=0.18  Score=44.62  Aligned_cols=52  Identities=19%  Similarity=0.144  Sum_probs=43.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc---------------------hHHHHhhcCCcEEecC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT---------------------RFILCQPFNIRVFIGF  191 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~---------------------~~~~~~~~G~~~~~~~  191 (193)
                      .+++++|+|+ |..|+.++..++..|.+|+++.+.+.                     +.++++++|++..++.
T Consensus       309 ~~kkVaIIG~-GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~  381 (639)
T PRK12809        309 RSEKVAVIGA-GPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC  381 (639)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence            4899999997 99999999999999999999987653                     4566778888766654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.13  E-value=0.15  Score=40.32  Aligned_cols=41  Identities=22%  Similarity=0.161  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|.|+ |+.+.+++..+..+|+ +++++.|+.+|.+.+
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~L  165 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRL  165 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            4778999997 9999999999999998 799999998877655

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.13  E-value=0.16  Score=44.97  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++|+|+|+ |..|++++..++.+|.+|+++.+.+
T Consensus       326 ~~~~VaIIGa-GpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGA-GPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecCC
Confidence            5789999998 9999999999999999999998754

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.11  E-value=0.26  Score=39.27  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+.+++|+|+++++|...+..+...|++|++..++
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~   45 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA   45 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            46799999999999999999888899999988764

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.09  E-value=0.34  Score=38.39  Aligned_cols=42  Identities=19%  Similarity=0.150  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~  181 (193)
                      .+++++|.|+ |+.+.+++..+...|+ +++++.|+.+|.+.+.
T Consensus       126 ~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        126 KLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             CCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            4678999998 9999998888888997 7899999988876663

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.05  E-value=0.26  Score=35.64  Aligned_cols=49  Identities=20%  Similarity=0.142  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .=.|++++|.|= |.+|.-+++.++.+|++|+++...+-+.-.+..-|+.
T Consensus        20 ~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~   68 (162)
T PF00670_consen   20 MLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE   68 (162)
T ss_dssp             --TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E
T ss_pred             eeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE
Confidence            457889999995 9999999999999999999999888776666555653

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.02  E-value=0.14  Score=42.39  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=35.9

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+-..+.+++|+|++|.+|..+++.+...|.+|++++++..+
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~   96 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG   96 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence            344567899999999999999999999899999999987643

>PLN00198 anthocyanidin reductase; Provisional

Probab=94.02  E-value=0.15  Score=41.05  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      +.++||+|++|.+|..++..+...|++|++++++.++
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~   45 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN   45 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            6789999999999999999999999999888776543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.01  E-value=0.35  Score=38.37  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~  174 (193)
                      .+++++|+|+ |+.|.+++..+...|++ |+++.|+.
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4678999998 89999988888889995 99999886

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=94.00  E-value=0.065  Score=25.36  Aligned_cols=22  Identities=45%  Similarity=0.795  Sum_probs=14.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI   25 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~   25 (193)
                      |||++++.+++   +++++++.|.+
T Consensus         1 MkAv~y~G~~~---v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD---VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE---EEEEEE----S
T ss_pred             CcceEEeCCCc---eEEEECCCccc
Confidence            89999997655   89999988764

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.98  E-value=0.17  Score=42.57  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      ++++++|+|++|.+|..+++.+...|++|+++.++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~  243 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP  243 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999999999999999999999998874

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=93.93  E-value=0.19  Score=38.64  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+.+++|+|+++.+|..+++.+...|++|+.+.++
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~   43 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIV   43 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCc
Confidence            36799999999999999999999999999887654

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.90  E-value=0.18  Score=38.92  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=31.3

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGG--SSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga--~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++++|+|+  ++++|..+++.+...|++|+++.++.
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            4679999998  79999999998888999999988653

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.81  E-value=0.29  Score=39.06  Aligned_cols=47  Identities=28%  Similarity=0.414  Sum_probs=42.2

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      +.++...++|+|++.++|.+...-++..|+.|.++.++.+|+..+.+
T Consensus        29 ~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~   75 (331)
T KOG1210|consen   29 KPKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKA   75 (331)
T ss_pred             ccCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHh
Confidence            34566899999999999999999999999999999999999988764

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=93.81  E-value=0.16  Score=38.86  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .++++||+|++|.+|..++..+...|++|+++.++.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence            467899999999999999999988999999888755

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=93.78  E-value=0.31  Score=41.00  Aligned_cols=48  Identities=13%  Similarity=0.045  Sum_probs=40.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+|.+++|+.|+.+...++.+|++++++..   +.+|.+.++.+|+..++
T Consensus       153 ~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~  203 (431)
T TIGR02035       153 YSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVE  203 (431)
T ss_pred             ceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            4677788899999999999999998877776   55688999999996655

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=93.72  E-value=0.2  Score=39.22  Aligned_cols=47  Identities=21%  Similarity=0.278  Sum_probs=39.3

Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHhh
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATRFILCQP  182 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~~~~~~~  182 (193)
                      ...++++++||.+|+ |. |..++++++..+.  +|+.++.+++.++.+++
T Consensus        72 ~~~~~~g~~VLDiG~-G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~  120 (272)
T PRK11873         72 LAELKPGETVLDLGS-GG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA  120 (272)
T ss_pred             hccCCCCCEEEEeCC-CC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence            356789999999996 66 8888888888764  69999999998888875

>PRK10717 cysteine synthase A; Provisional

Probab=93.72  E-value=0.58  Score=37.81  Aligned_cols=56  Identities=13%  Similarity=0.227  Sum_probs=43.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++++|+. .++|+.|.++...++.+|.+.+++..   ++.+.+.++.+|++.++
T Consensus        57 ~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~  115 (330)
T PRK10717         57 KRGLLKPGGTIVE-GTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVL  115 (330)
T ss_pred             HcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence            3445567766554 66799999999999999998777776   45588888999997554

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.64  E-value=0.2  Score=36.80  Aligned_cols=45  Identities=22%  Similarity=0.232  Sum_probs=39.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      .|..++++|+.-++|...++.+...|++|+++.|+++.+..+-++
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e   50 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE   50 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh
Confidence            467899999989999999999999999999999999988777543

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=93.60  E-value=0.36  Score=40.21  Aligned_cols=48  Identities=15%  Similarity=0.066  Sum_probs=40.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .-+|..++|+.|+++...++.+|++.+++..   +.+|.+.++.+|+..+.
T Consensus       135 ~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~  185 (404)
T cd06447         135 YSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVE  185 (404)
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEE
Confidence            3577788899999999999999998887776   66788999999996554

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.53  E-value=0.37  Score=40.95  Aligned_cols=50  Identities=20%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-----hHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-----RFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-----~~~~~~~~G~~~~~  189 (193)
                      .+++++|.|+ |.+|+.++.+++..|++|+++.+.+.     ..+.+++.|+....
T Consensus        15 ~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~   69 (480)
T PRK01438         15 QGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL   69 (480)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence            4678999997 99999999999999999999886542     23456677875443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.51  E-value=0.69  Score=32.64  Aligned_cols=46  Identities=13%  Similarity=0.182  Sum_probs=36.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHH-hhcC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILC-QPFN  184 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~-~~~G  184 (193)
                      ..+.+++|+|+ |.+|...++.+...| .+|+++.++.++.+.+ ++++
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~   64 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG   64 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence            45688999997 999999999988886 6899999888776654 3444

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.49  E-value=0.43  Score=30.83  Aligned_cols=45  Identities=9%  Similarity=0.146  Sum_probs=36.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCC---CEEEEE-eCCcchHHHHh-hcCCcE
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQG---VRVFVT-AGLATRFILCQ-PFNIRV  187 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g---~~v~~~-~~~~~~~~~~~-~~G~~~  187 (193)
                      +|.++|+ |.+|.+.+.-+...|   .+++++ .+++++.+.+. ++++..
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~   50 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQA   50 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEE
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcccc
Confidence            4677786 999999999999999   789955 99999888775 567543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR01136 cysKM cysteine synthases

Probab=93.41  E-value=0.86  Score=36.25  Aligned_cols=56  Identities=16%  Similarity=0.323  Sum_probs=43.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+.+++++ +..++|+.|.++...++.+|.+.+++..   ++.|.+.++.+|++.++
T Consensus        51 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~  109 (299)
T TIGR01136        51 KRGLLKPGDTI-IEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELIL  109 (299)
T ss_pred             HcCCCCCCCEE-EEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            34445667765 5667799999999999999998777776   45688889999997665

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.39  E-value=0.24  Score=43.05  Aligned_cols=47  Identities=19%  Similarity=0.157  Sum_probs=42.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      ++++|.|. |.+|+.+++.++..|.++++++.++++.+.+++.|...+
T Consensus       418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i  464 (558)
T PRK10669        418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAV  464 (558)
T ss_pred             CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEE
Confidence            68899997 999999999999999999999999999999998887544

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=93.37  E-value=0.29  Score=40.47  Aligned_cols=58  Identities=24%  Similarity=0.168  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          124 ACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       124 ~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      -...+..+....++++++++|-+|+  +.|..+..+++..|++|+.++.+++..+.+++.
T Consensus       152 q~~k~~~l~~~l~l~~g~rVLDIGc--G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~  209 (383)
T PRK11705        152 QEAKLDLICRKLQLKPGMRVLDIGC--GWGGLARYAAEHYGVSVVGVTISAEQQKLAQER  209 (383)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            3444555556678899999999985  578888899998899999999999999888763

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=93.33  E-value=1.1  Score=32.36  Aligned_cols=70  Identities=11%  Similarity=0.055  Sum_probs=42.7

Q ss_pred             cCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       119 ~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      .+|+.....+..|....---.|++++|.|.+..+|.-+..++++.|+.|...-...+.++..- ..+|.++
T Consensus        15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~-~~ADIVV   84 (160)
T PF02882_consen   15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT-RRADIVV   84 (160)
T ss_dssp             S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH-TTSSEEE
T ss_pred             CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee-eeccEEe
Confidence            344444455555533322347899999999899999999999999999998876554443322 3555555

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.27  E-value=0.28  Score=37.20  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCC-chHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCC
Q 029425          139 PGESFLVHGGS-SGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~-g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~  185 (193)
                      ....|+|+|++ |++|.++..-....|+.|+++.|+-+.+..+. ++|.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl   54 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGL   54 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCC
Confidence            44678888766 99999988888888999999999999888776 5665

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=93.25  E-value=0.37  Score=38.48  Aligned_cols=45  Identities=20%  Similarity=0.221  Sum_probs=39.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ..++.|+|+|+.+++|..++.-+...|.+|++.+-.++..+.++.
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~   71 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRG   71 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhh
Confidence            456779999999999999999999999999999988887777653

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=93.22  E-value=0.43  Score=33.17  Aligned_cols=49  Identities=12%  Similarity=0.121  Sum_probs=35.7

Q ss_pred             EEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchH---HHHhhcCCcEEecC
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRF---ILCQPFNIRVFIGF  191 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~---~~~~~~G~~~~~~~  191 (193)
                      |.|.|++|.+|..++++.++..  ++|+....+.+-.   +.+++|....+.-+
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~   54 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIA   54 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEc
Confidence            5789999999999999999987  7888777654432   34456777665543

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK06381 threonine synthase; Validated

Probab=93.15  E-value=0.36  Score=38.75  Aligned_cols=51  Identities=12%  Similarity=0.161  Sum_probs=41.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG  190 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~  190 (193)
                      |.+.+|...+|+.|.++...++.+|.+.+++..   +..+.+.++.+|++.++.
T Consensus        62 g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~  115 (319)
T PRK06381         62 GYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYV  115 (319)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEc
Confidence            445667778899999999999999998887776   356788899999976654

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.14  E-value=0.66  Score=36.84  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~  174 (193)
                      .+++++|.|+ |+.+.+++..+...|+ +++++.|++
T Consensus       123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            5678999998 8889887776777887 899999985

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.08  E-value=0.23  Score=40.81  Aligned_cols=36  Identities=14%  Similarity=0.093  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      ..+.+|+|+|++|.+|..++..+...|.+|+++++.
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            456899999999999999999999999999998864

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.08  E-value=0.29  Score=43.12  Aligned_cols=48  Identities=17%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      .++++|.|. |.+|+..++.+++.|.++++++.++++.+.+++.|...+
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~  447 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVF  447 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEE
Confidence            368999997 999999999999999999999999999999999987543

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.08  E-value=0.31  Score=38.63  Aligned_cols=46  Identities=20%  Similarity=0.225  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH----HHHhhcC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF----ILCQPFN  184 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~----~~~~~~G  184 (193)
                      .|+.+||+|+.+++|.+.++-...+|+++++.+.+++-.    +.+++.|
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g   86 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG   86 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC
Confidence            689999999999999988877777899988888766533    4444455

>PRK12744 short chain dehydrogenase; Provisional

Probab=93.08  E-value=0.25  Score=37.97  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .+.+++|+|++|.+|..+++.+...|++|+++.+
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~   40 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY   40 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence            3578999999999999999999989999776654

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=93.08  E-value=0.82  Score=38.57  Aligned_cols=56  Identities=11%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+.+|++++- .++|+.|.++...++.+|++++++..   +++|...++.+|++.++
T Consensus        55 ~~g~~~~g~~vv~-~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~  113 (454)
T TIGR01137        55 ASGRLKPGDTIIE-PTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVR  113 (454)
T ss_pred             HcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEE
Confidence            4455677766554 56799999999999999999888876   45688889999997554

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.05  E-value=0.22  Score=42.01  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .++.+|||+|++|.+|..+++.+...|.+|+++++
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~  151 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN  151 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence            35689999999999999999999999999998864

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=93.04  E-value=0.32  Score=43.15  Aligned_cols=39  Identities=13%  Similarity=-0.012  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~  175 (193)
                      .+++.+|||+|++|.+|..+++.+... |.+|+++++...
T Consensus       312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~  351 (660)
T PRK08125        312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD  351 (660)
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence            456789999999999999999988875 689999987554

>PRK06110 hypothetical protein; Provisional

Probab=93.02  E-value=0.57  Score=37.75  Aligned_cols=47  Identities=4%  Similarity=0.039  Sum_probs=38.4

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      -+|...+|+.|+++...++.+|.+.+++..   ++.|.+.++.+|+..+.
T Consensus        72 ~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~  121 (322)
T PRK06110         72 GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIE  121 (322)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence            377788899999999999999998777775   34677888899986543

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=92.88  E-value=0.25  Score=41.55  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      +++.+|||+|++|.+|..++..+.+.|.+|+++++.
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~  153 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF  153 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            456789999999999999999999999999998864

>PLN02970 serine racemase

Probab=92.80  E-value=0.58  Score=37.84  Aligned_cols=46  Identities=11%  Similarity=0.081  Sum_probs=38.0

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|.++...++.+|.+++++..   +++|.+.++.+|+..+.
T Consensus        78 vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~  126 (328)
T PLN02970         78 VVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITW  126 (328)
T ss_pred             EEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            55566799999999999999999888886   46678888999996554

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=92.78  E-value=1.1  Score=35.48  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=40.9

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..++++++ +..++|+.|.++...++.+|.+.+++..   ++.+.+.++.+|++.++
T Consensus        49 ~~~~~~~v-v~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~  104 (291)
T cd01561          49 LLKPGTTI-IEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVIL  104 (291)
T ss_pred             CCCCCCEE-EEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            34455554 5577899999999999999998777776   35578888999996543

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>PRK07048 serine/threonine dehydratase; Validated

Probab=92.71  E-value=0.58  Score=37.68  Aligned_cols=46  Identities=11%  Similarity=0.055  Sum_probs=37.3

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|.++...++.+|++++++..   ++.|.+.++.+|+..++
T Consensus        75 vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~  123 (321)
T PRK07048         75 VVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVT  123 (321)
T ss_pred             EEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            45556799999999999999998887776   44577888899997554

>PLN02356 phosphateglycerate kinase

Probab=92.66  E-value=0.92  Score=38.05  Aligned_cols=55  Identities=13%  Similarity=0.176  Sum_probs=42.8

Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .+.++++.+| +..++|+.|.++..+++.+|++++++..   +++|.+.++.+|+..+.
T Consensus        98 ~g~~~~~g~V-veaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~  155 (423)
T PLN02356         98 SGQLFPGGVV-TEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVER  155 (423)
T ss_pred             CCccCCCCEE-EEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEE
Confidence            3445566654 4466799999999999999999888876   46788999999997553

>PRK06608 threonine dehydratase; Provisional

Probab=92.62  E-value=0.66  Score=37.71  Aligned_cols=47  Identities=11%  Similarity=0.044  Sum_probs=38.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .+|..++|+.|.++...++.+|.+.+++..   +++|.+.++.+|+..++
T Consensus        74 ~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~  123 (338)
T PRK06608         74 KIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVIL  123 (338)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence            456778899999999999999998777765   45678889999996554

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.61  E-value=0.44  Score=29.77  Aligned_cols=33  Identities=21%  Similarity=0.114  Sum_probs=29.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +++|.|+ |.+|.-++..++.+|.+|.++.+++.
T Consensus         1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccch
Confidence            5789997 99999999999999999999998665

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02572 UDP-sulfoquinovose synthase

Probab=92.61  E-value=0.25  Score=41.67  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA  171 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~  171 (193)
                      ++.+|||+||+|.+|..+++.+...|++|++++
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d   78 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD   78 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence            467899999999999999999999999999875

>PRK14982 acyl-ACP reductase; Provisional

Probab=92.56  E-value=0.35  Score=39.34  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=35.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHH-CCC-EEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKC-QGV-RVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~-~g~-~v~~~~~~~~~~~~~~  181 (193)
                      .+.+++|+||+|.+|..+++.+.. .|. +++++.++.+++..+.
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La  198 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ  198 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence            568999999999999999888864 564 8889998877776654

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=92.55  E-value=0.67  Score=36.82  Aligned_cols=49  Identities=8%  Similarity=0.112  Sum_probs=38.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .++++. .++|+.|.++..+++.+|.+++++..   ++++.+.++.+|+..+.
T Consensus        65 ~~~iv~-~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~  116 (304)
T cd01562          65 AKGVVA-ASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVL  116 (304)
T ss_pred             CCcEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            345544 45699999999999999999888877   34578888999986544

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.38  E-value=0.46  Score=34.18  Aligned_cols=42  Identities=17%  Similarity=0.071  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      .|.+|+|.|+ |.+|..-++.+...|++|.++.  ++..+.++++
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l   53 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS--PEICKEMKEL   53 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhc
Confidence            4788999998 9999999998888999998884  3433444444

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.32  E-value=0.36  Score=41.72  Aligned_cols=42  Identities=26%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+++++|+|+ |++|.+++..+...|++|+++.++.++.+.+.
T Consensus       378 ~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la  419 (529)
T PLN02520        378 AGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELA  419 (529)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            3578999998 99999999999999999999999877766553

>PRK02991 D-serine dehydratase; Provisional

Probab=92.14  E-value=0.78  Score=38.72  Aligned_cols=48  Identities=15%  Similarity=0.087  Sum_probs=40.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+|..++|+.|+++...++.+|.+.+++..   ++.|.+.++.+|+..++
T Consensus       158 ~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~  208 (441)
T PRK02991        158 YSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVE  208 (441)
T ss_pred             cEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence            3577788899999999999999998777765   66688999999996554

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.11  E-value=0.47  Score=41.69  Aligned_cols=48  Identities=13%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      .+.++|.|. |.+|+.+++.++..|.++++++.++++.+.+++.|...+
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~  447 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVY  447 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEE
Confidence            357888896 999999999999999999999999999999999887543

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=92.02  E-value=0.64  Score=35.68  Aligned_cols=48  Identities=6%  Similarity=0.149  Sum_probs=38.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+|..++|+.|.++...++..|.+++++..   ++.+.+.++.+|+..+.
T Consensus        51 ~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~  101 (244)
T cd00640          51 GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVL  101 (244)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            4556666699999999999999999888877   45577778889986543

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=92.00  E-value=0.27  Score=32.59  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.+++|.|+ |.+|..-++.+...|++|+++....
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence            4688999998 9999999999999999999999774

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.96  E-value=0.49  Score=36.71  Aligned_cols=39  Identities=13%  Similarity=0.150  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ...|..+++|.|+ |.++..++++++.+|++|++++..++
T Consensus        96 ~~~p~~~L~IfGa-G~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        96 EAPPAPHVVLFGA-GHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             ccCCCCEEEEECC-cHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            3567789999998 99999999999999999999886655

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK08198 threonine dehydratase; Provisional

Probab=91.95  E-value=0.98  Score=37.59  Aligned_cols=49  Identities=6%  Similarity=0.109  Sum_probs=38.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ++++ |..++|+.|+++...++.+|.+.+++..   +.+|.+.++.+|+..++
T Consensus        70 ~~~v-v~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~  121 (404)
T PRK08198         70 ARGV-VAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVL  121 (404)
T ss_pred             CCEE-EEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence            4555 4455699999999999999998777766   45677888999996554

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=91.88  E-value=1  Score=38.04  Aligned_cols=36  Identities=17%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      -.|.+|.|.|. |.+|..+++.+..+|++|+.+..+.
T Consensus       235 l~Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        235 LEGKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            36889999996 9999999999999999999555443

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=91.87  E-value=0.47  Score=40.90  Aligned_cols=42  Identities=19%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      .|++|+|+||+|.+|.-.+.-....+. ++++..+++.++-..
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i  291 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI  291 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH
Confidence            589999999999999876665555576 788888887776444

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=91.81  E-value=0.57  Score=37.81  Aligned_cols=46  Identities=22%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+++|.|+|- |.+|...++.++.+|.+|++..+.....+.++..|+
T Consensus        15 kgKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~   60 (335)
T PRK13403         15 QGKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGF   60 (335)
T ss_pred             CcCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCC
Confidence            5789999996 999999999999999999998776555556666665

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=91.80  E-value=1.1  Score=37.09  Aligned_cols=59  Identities=14%  Similarity=0.128  Sum_probs=42.5

Q ss_pred             HHhHccCcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          114 LKDAAAFPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       114 ~~~aa~~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..++......+.+- .++. ..+. =.|.+|.|.|. |.+|+.+++.+..+|++|+++..+..
T Consensus       182 r~~aTg~Gv~~~~~-~a~~-~~g~~l~G~rVaVQG~-GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         182 RSEATGYGVFYAIR-EALK-ALGDDLEGARVAVQGF-GNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             CCcccceehHHHHH-HHHH-HcCCCcCCCEEEEECc-cHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            34454444443333 3443 3333 37899999996 99999999999999999999887766

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.71  E-value=0.48  Score=40.03  Aligned_cols=45  Identities=18%  Similarity=0.136  Sum_probs=36.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      +.+|+|+|. |..|+.++.+++..|++|.+.+........++++|+
T Consensus         9 ~~~i~viG~-G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~   53 (460)
T PRK01390          9 GKTVAVFGL-GGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGI   53 (460)
T ss_pred             CCEEEEEee-cHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCc
Confidence            568999997 999999999999999999999976554544555665

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.68  E-value=1.6  Score=34.58  Aligned_cols=70  Identities=11%  Similarity=0.052  Sum_probs=45.8

Q ss_pred             CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +|+.....+..+....--=.|.+++|.|.+..+|.-+..++...|++|++..+....+... -..+|.+|.
T Consensus       138 ~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~-~~~ADIVIs  207 (286)
T PRK14175        138 VPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASY-LKDADVIVS  207 (286)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHH-HhhCCEEEE
Confidence            4444444444443322123689999999967799999999999999999888654432211 135566554

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=91.58  E-value=1.1  Score=38.17  Aligned_cols=41  Identities=7%  Similarity=0.047  Sum_probs=35.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|+ |++|.+++..+...|+++++..++.++.+.+
T Consensus       331 ~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~l  371 (477)
T PRK09310        331 NNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEAL  371 (477)
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4678999997 9999999999999999999999888776654

>PLN03139 formate dehydrogenase; Provisional

Probab=91.51  E-value=0.56  Score=38.84  Aligned_cols=46  Identities=17%  Similarity=0.107  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .|.++.|+|. |.+|...++.++.+|++|+...++....+..++.|+
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence            4679999996 999999999999999999998876543333344444

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.45  E-value=0.76  Score=30.72  Aligned_cols=59  Identities=5%  Similarity=0.041  Sum_probs=45.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +..+++.-+.+++.-..-..-..++..++.++  .++++...+++..+.++++|++.++++
T Consensus        56 ~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P  116 (116)
T PF02254_consen   56 ERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP  116 (116)
T ss_dssp             HHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred             hhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence            45666766777777555566677888888743  589999999999999999999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=91.31  E-value=0.52  Score=39.22  Aligned_cols=44  Identities=14%  Similarity=0.064  Sum_probs=38.9

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .....+|+|.||+|.+|+..++.++..|..|.+.+++.++.+-+
T Consensus        76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~  119 (411)
T KOG1203|consen   76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDL  119 (411)
T ss_pred             CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhh
Confidence            45567999999999999999999999999999999988876554

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=91.27  E-value=0.65  Score=30.67  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHH-HCCCEEEEEeCCcchHHHHhh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~-~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      |+++||-.|+  +.|..++.+++ ..+++|+.++.+++..+.+++
T Consensus         1 p~~~vLDlGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~   43 (112)
T PF12847_consen    1 PGGRVLDLGC--GTGRLSIALARLFPGARVVGVDISPEMLEIARE   43 (112)
T ss_dssp             TTCEEEEETT--TTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEcC--cCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence            6788998884  55888888888 478999999999998888865

...

>PRK07574 formate dehydrogenase; Provisional

Probab=91.22  E-value=0.62  Score=38.58  Aligned_cols=36  Identities=19%  Similarity=0.149  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.+|.|+|. |.+|..+++.++.+|++|+...++..
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~~  226 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHRL  226 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            4678999996 99999999999999999999998753

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=91.21  E-value=0.87  Score=31.24  Aligned_cols=32  Identities=13%  Similarity=0.063  Sum_probs=26.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCC
Q 029425          142 SFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGL  173 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~-~g~~v~~~~~~  173 (193)
                      +|.|+|++|.+|...++.+.+ .+.++.....+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~   34 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDR   34 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEec
Confidence            589999999999999999998 66786654433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK08813 threonine dehydratase; Provisional

Probab=91.13  E-value=1.5  Score=35.81  Aligned_cols=46  Identities=9%  Similarity=-0.011  Sum_probs=37.9

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|+++...++.+|.+.+++..   +..|.+.++.+|+..+.
T Consensus        84 VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~  132 (349)
T PRK08813         84 VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQ  132 (349)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence            67778899999999999999998777664   55688888999996543

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=91.10  E-value=0.35  Score=33.92  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      ++|.|+ |.++.+++++++.+|++|++++..+++.
T Consensus         1 L~I~Ga-G~va~al~~la~~lg~~v~v~d~r~e~~   34 (136)
T PF13478_consen    1 LVIFGA-GHVARALARLAALLGFRVTVVDPRPERF   34 (136)
T ss_dssp             EEEES--STCHHHHHHHHHHCTEEEEEEES-CCC-
T ss_pred             CEEEeC-cHHHHHHHHHHHhCCCEEEEEcCCcccc
Confidence            478887 9999999999999999999999876633

>PRK08638 threonine dehydratase; Validated

Probab=91.06  E-value=1.3  Score=35.86  Aligned_cols=47  Identities=9%  Similarity=-0.041  Sum_probs=37.4

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .+|..++|+.|.++...++.+|.+.+++..   ++.|...++.+|+..++
T Consensus        77 ~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  126 (333)
T PRK08638         77 GVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVL  126 (333)
T ss_pred             eEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEE
Confidence            345556799999999999999998777776   34577888999996654

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=91.05  E-value=1.3  Score=37.02  Aligned_cols=45  Identities=9%  Similarity=0.185  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh-hcC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ-PFN  184 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~-~~G  184 (193)
                      .+.+++|.|+ |.+|.+++..+...|+ +++++.|+.++.+.+. ++|
T Consensus       180 ~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~  226 (414)
T PRK13940        180 SSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR  226 (414)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence            5678999997 9999999999999997 7999999988765554 354

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=91.05  E-value=1.7  Score=33.22  Aligned_cols=44  Identities=9%  Similarity=0.194  Sum_probs=33.4

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE---EEEEeCC
Q 029425          129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR---VFVTAGL  173 (193)
Q Consensus       129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~---v~~~~~~  173 (193)
                      .++.....--.+.+++|.|+ |..|..++..+...|++   ++++.++
T Consensus        14 ~al~~~g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          14 NALKLVGKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             HHHHHhCCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            34533332235679999998 99999999988888974   8899887

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08246 threonine dehydratase; Provisional

Probab=90.98  E-value=1.6  Score=35.06  Aligned_cols=50  Identities=14%  Similarity=0.183  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ++++ +|...+|+.|+++...++.+|.+++++..   ++.+...++.+|+..++
T Consensus        67 ~~~~-vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  119 (310)
T PRK08246         67 PAAG-VVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVV  119 (310)
T ss_pred             cCCe-EEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEE
Confidence            4455 45566799999999999999998777775   44578888999996544

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=90.92  E-value=1.1  Score=36.14  Aligned_cols=50  Identities=10%  Similarity=0.007  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ++++|+. .++|+.|.++...++.+|.+++++..   ++.+.+.++.+|+..++
T Consensus        50 ~~~~vv~-aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~  102 (316)
T cd06448          50 ECVHVVC-SSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVV  102 (316)
T ss_pred             cCCeEEE-eCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            4555555 45699999999999999998887776   45678888999997554

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=90.85  E-value=1.1  Score=37.15  Aligned_cols=34  Identities=24%  Similarity=0.124  Sum_probs=27.8

Q ss_pred             CCCCeEEEEcCCchHHHH--HHHHHHHCCCEEEEEeC
Q 029425          138 SPGESFLVHGGSSGIGTF--AIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~--~i~~~~~~g~~v~~~~~  172 (193)
                      ..++++||+|+++++|.+  ..+.+ ..|++++++..
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~   74 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFF   74 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEec
Confidence            456899999999999999  45555 78999888773

>PRK14031 glutamate dehydrogenase; Provisional

Probab=90.85  E-value=1.3  Score=37.29  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .|.+|+|.|. |.+|..+++.+..+|++|+++..
T Consensus       227 ~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        227 KGKVCLVSGS-GNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence            6889999997 99999999999999999998664

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=90.68  E-value=1.7  Score=33.86  Aligned_cols=34  Identities=15%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      -+|.++.|.|- |.+|+.+++++..+|++|+.+..
T Consensus        36 l~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          36 LKGKRVAISGS-GNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence            35789999996 99999999999999999996654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07476 eutB threonine dehydratase; Provisional

Probab=90.48  E-value=1.5  Score=35.35  Aligned_cols=46  Identities=15%  Similarity=0.202  Sum_probs=37.5

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|...+|+.|.++..+++.+|++++++..   ++.|...++.+|+..++
T Consensus        70 vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~  118 (322)
T PRK07476         70 VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRI  118 (322)
T ss_pred             EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence            55567899999999999999998887776   34577888999997554

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.46  E-value=2.8  Score=31.87  Aligned_cols=35  Identities=17%  Similarity=0.139  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.++.|.|- |.+|..+++.+..+|++++.+..+.
T Consensus        22 ~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~   56 (217)
T cd05211          22 EGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPD   56 (217)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            5789999996 9999999999999999766555443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PLN02928 oxidoreductase family protein

Probab=90.45  E-value=0.63  Score=38.00  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|.++.|+|- |.+|..+++.++.+|++|+...++
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCC
Confidence            4789999996 999999999999999999999876

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=90.43  E-value=0.95  Score=37.38  Aligned_cols=50  Identities=12%  Similarity=0.053  Sum_probs=40.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +...+|...+|+.|+++...++.+|++.+++..   +..|.+.++.+|+..++
T Consensus        93 ~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~  145 (376)
T TIGR01747        93 GQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTI  145 (376)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence            355677788899999999999999998777766   34578888899996554

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>PRK13984 putative oxidoreductase; Provisional

Probab=90.37  E-value=0.97  Score=39.66  Aligned_cols=53  Identities=13%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc---------------------hHHHHhhcCCcEEec
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT---------------------RFILCQPFNIRVFIG  190 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~---------------------~~~~~~~~G~~~~~~  190 (193)
                      .+++++++|.|+ |..|+.++..++..|.+|.++.+.+.                     ..+.++++|++..+|
T Consensus       280 ~~~~~~v~IIGa-G~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~  353 (604)
T PRK13984        280 EKKNKKVAIVGS-GPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLN  353 (604)
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECC
Confidence            356889999996 99999999999999999998876431                     235567788766554

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=90.36  E-value=1.1  Score=39.85  Aligned_cols=37  Identities=16%  Similarity=0.115  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..+++|+|+|+ |..|+.++..+...|.+|+++.+++.
T Consensus       191 ~~~k~VaIIGa-GpAGl~aA~~La~~G~~Vtv~e~~~~  227 (652)
T PRK12814        191 KSGKKVAIIGA-GPAGLTAAYYLLRKGHDVTIFDANEQ  227 (652)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            35689999997 99999999999999999999987643

>PRK13243 glyoxylate reductase; Reviewed

Probab=90.35  E-value=0.91  Score=36.84  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|+++.|+|- |.+|...++.++.+|++|++..++.+.
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            4689999996 999999999999999999999876543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=90.29  E-value=0.87  Score=36.83  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|+++.|.|- |.+|++..+.++.+|++|+...++..
T Consensus       145 ~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~  180 (324)
T COG1052         145 RGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPN  180 (324)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            4789999996 99999999999999999999998865

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=90.29  E-value=1.9  Score=35.53  Aligned_cols=47  Identities=9%  Similarity=0.118  Sum_probs=37.8

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      -+|..++|+.|+++...++.+|++.+++..   +..|.+.++.+|+..++
T Consensus        50 ~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~   99 (380)
T TIGR01127        50 GVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVIL   99 (380)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEE
Confidence            355566799999999999999998777765   44678888999997655

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=90.26  E-value=0.96  Score=40.17  Aligned_cols=53  Identities=17%  Similarity=0.232  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEE-EEEeCCc--ch-HHHHhhcCCcEEecC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRV-FVTAGLA--TR-FILCQPFNIRVFIGF  191 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v-~~~~~~~--~~-~~~~~~~G~~~~~~~  191 (193)
                      +..+|||+|++|.+|..++..+...|.+| +...+-.  +. ...+++.+.|.|||.
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~  435 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNA  435 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEEC
Confidence            44589999999999999999999889888 3333211  12 233455688988864

>PRK06721 threonine synthase; Reviewed

Probab=90.21  E-value=1.3  Score=36.18  Aligned_cols=50  Identities=6%  Similarity=0.165  Sum_probs=39.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC----cchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL----ATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~----~~~~~~~~~~G~~~~~  189 (193)
                      |...+|...+|+.|.++..+++.+|.+++++...    +.|...++.+|+..++
T Consensus        74 g~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~  127 (352)
T PRK06721         74 GSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIIS  127 (352)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEE
Confidence            3455666778999999999999999988877753    3477788899997654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=90.14  E-value=2  Score=32.29  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .|.+|+|.|+ |.+|..-++.+...|++|+++....
T Consensus         8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3679999998 9999999999999999999887644

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.13  E-value=1.2  Score=37.89  Aligned_cols=47  Identities=19%  Similarity=0.037  Sum_probs=36.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH-HhhcCCcE
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL-CQPFNIRV  187 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~-~~~~G~~~  187 (193)
                      +.+++|.|. |..|.+++.+++..|++|++.++...+... ++++|+..
T Consensus        15 ~~~v~v~G~-G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~   62 (473)
T PRK00141         15 SGRVLVAGA-GVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVAD   62 (473)
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEE
Confidence            457999997 999999999999999999999976554433 35567633

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.07  E-value=3.3  Score=32.89  Aligned_cols=56  Identities=16%  Similarity=0.047  Sum_probs=39.4

Q ss_pred             CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +|+.....+..|....---.|.+++|.|.+..+|.-+..++...|++|++.-....
T Consensus       138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~  193 (285)
T PRK14189        138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR  193 (285)
T ss_pred             cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC
Confidence            34444444444432222236899999999888899999999999999988765443

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=90.07  E-value=0.61  Score=35.70  Aligned_cols=45  Identities=11%  Similarity=0.218  Sum_probs=39.0

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      +..+-..|-|.|+ |.+|.-..|++...|..|.+++++++.+..++
T Consensus         7 ~~~~~~~V~ivGa-G~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~   51 (298)
T KOG2304|consen    7 NMAEIKNVAIVGA-GQMGSGIAQVAATSGLNVWLVDANEDALSRAT   51 (298)
T ss_pred             ccccccceEEEcc-cccchhHHHHHHhcCCceEEecCCHHHHHHHH
Confidence            3455578999998 99999999999999999999999999887664

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.94  E-value=4  Score=32.61  Aligned_cols=68  Identities=13%  Similarity=0.094  Sum_probs=45.0

Q ss_pred             CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchHHHHhhcCCcEEe
Q 029425          120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRFILCQPFNIRVFI  189 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~~~~~~~G~~~~~  189 (193)
                      +|+.....+..|....---.|+++.|+|-++.+|.-.+.++...|+.|++.. ++.+-.+.++  .+|.++
T Consensus       138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~--~ADIVI  206 (296)
T PRK14188        138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCR--RADILV  206 (296)
T ss_pred             cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHh--cCCEEE
Confidence            4444444554443322224689999999889999999999999999999984 5543323332  345544

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=89.76  E-value=1.9  Score=34.67  Aligned_cols=46  Identities=15%  Similarity=0.138  Sum_probs=37.6

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|...+|+.|.++...++.+|.+++++..   ++.|.+.++.+|+..++
T Consensus        70 vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~  118 (317)
T TIGR02991        70 VVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRI  118 (317)
T ss_pred             EEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEE
Confidence            56677899999999999999998877766   34578888999996554

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PLN00016 RNA-binding protein; Provisional

Probab=89.76  E-value=0.58  Score=38.44  Aligned_cols=37  Identities=19%  Similarity=0.144  Sum_probs=33.0

Q ss_pred             CCeEEEE----cCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          140 GESFLVH----GGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       140 ~~~vli~----ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      ..+|||+    |++|.+|..++..+...|.+|++++++..+
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            3679999    999999999999999999999999987653

>PRK07409 threonine synthase; Validated

Probab=89.69  E-value=1.9  Score=35.16  Aligned_cols=48  Identities=8%  Similarity=0.142  Sum_probs=37.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC----cchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL----ATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~----~~~~~~~~~~G~~~~~  189 (193)
                      ..+|...+|+.|.++...++.+|.+++++...    ..|.+.++.+|+..++
T Consensus        79 ~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~  130 (353)
T PRK07409         79 KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQ  130 (353)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEE
Confidence            45666788999999999999999987766653    3577788899996554

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=89.69  E-value=1.2  Score=35.91  Aligned_cols=49  Identities=6%  Similarity=0.084  Sum_probs=38.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +++| |...+|+.|.++...++.+|.+++++..   +..+.+.++.+|+..++
T Consensus        70 ~~~v-v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~  121 (324)
T cd01563          70 VKAV-ACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLA  121 (324)
T ss_pred             CCEE-EEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEE
Confidence            4444 5556799999999999999998887776   45677888999996554

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=89.66  E-value=1.3  Score=32.89  Aligned_cols=47  Identities=17%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQ  181 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~  181 (193)
                      ....+.++++++-.|+ |. |..++.+++..+  .+|+.++.+++..+.++
T Consensus        34 ~~l~~~~~~~vlDlG~-Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~   82 (198)
T PRK00377         34 SKLRLRKGDMILDIGC-GT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR   82 (198)
T ss_pred             HHcCCCCcCEEEEeCC-cC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            3457889999999997 66 999999988764  58999999988887664

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.59  E-value=1.4  Score=37.27  Aligned_cols=47  Identities=11%  Similarity=-0.026  Sum_probs=36.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-----hHHHHhhcCCcE
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-----RFILCQPFNIRV  187 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-----~~~~~~~~G~~~  187 (193)
                      +.+|+|+|. |..|++++++++..|++|.+.+.++.     ..+.+++.|...
T Consensus        14 ~~~i~v~G~-G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~   65 (458)
T PRK01710         14 NKKVAVVGI-GVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKL   65 (458)
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEE
Confidence            578999997 99999999999999999999997642     113456666543

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.56  E-value=1.1  Score=35.67  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .|++++|+|+.  +++|.+.+..+.+.|++|++..+
T Consensus         7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~   42 (299)
T PRK06300          7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTW   42 (299)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence            57899999994  89999999999999999999653

>PRK14030 glutamate dehydrogenase; Provisional

Probab=89.56  E-value=2  Score=36.31  Aligned_cols=31  Identities=16%  Similarity=0.175  Sum_probs=28.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT  170 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~  170 (193)
                      .|.+|.|.|- |.+|..+++.+..+|++|+++
T Consensus       227 ~g~~vaIQGf-GnVG~~aA~~L~e~GakvVav  257 (445)
T PRK14030        227 KGKTVAISGF-GNVAWGAATKATELGAKVVTI  257 (445)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEE
Confidence            5889999996 999999999999999999984

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=89.55  E-value=4.5  Score=28.51  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      =.|++++|+|.+..+|.-+..++...|++|+...+...
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~   63 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI   63 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc
Confidence            36899999999999999999999999999998875443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=89.43  E-value=1.6  Score=36.88  Aligned_cols=51  Identities=14%  Similarity=0.163  Sum_probs=39.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc--------chHHHHhhcCCcEEe
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA--------TRFILCQPFNIRVFI  189 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~--------~~~~~~~~~G~~~~~  189 (193)
                      ..+++++|+|+ |.+|.-++..+..+|++|.++.+..        ...+.+++.|.....
T Consensus       270 ~~gk~VvVIGg-G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~  328 (449)
T TIGR01316       270 YAGKSVVVIGG-GNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF  328 (449)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence            46789999998 9999999999999999998887643        122456677775443

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK08197 threonine synthase; Validated

Probab=89.33  E-value=1.5  Score=36.46  Aligned_cols=50  Identities=12%  Similarity=0.165  Sum_probs=40.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      |...+|..++|+.|.++..+++..|.++++++.   ++.+...++.+|+..+.
T Consensus       126 g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~  178 (394)
T PRK08197        126 GVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYL  178 (394)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence            345567678899999999999999998887774   55678888899996543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=89.14  E-value=0.89  Score=36.77  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      |+|+.|+|. |.+|..+++.++.+|++|+..++
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~  173 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDP  173 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEECC
Confidence            789999997 99999999999999999999998

>PRK05638 threonine synthase; Validated

Probab=89.14  E-value=1.4  Score=37.12  Aligned_cols=50  Identities=10%  Similarity=0.135  Sum_probs=39.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +...+|..++|+.|.++..+++.+|.++++++.   +..|...++.+|+..+.
T Consensus       111 g~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~  163 (442)
T PRK05638        111 AANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIR  163 (442)
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEE
Confidence            344556678899999999999999998877776   34677888899997654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.10  E-value=4.9  Score=32.17  Aligned_cols=56  Identities=18%  Similarity=0.027  Sum_probs=40.4

Q ss_pred             CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +|+.....+..|....--=.|+++.|+|.++.+|.-...++...|++|++..+...
T Consensus       139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~  194 (301)
T PRK14194        139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST  194 (301)
T ss_pred             CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence            44544444444433322236899999998779999999999999999999965544

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=89.04  E-value=0.92  Score=37.80  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             CCCeEEEEcC----------------CchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGG----------------SSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga----------------~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .|.+++|+|+                +|.+|.+.++.+...|++|+++.++.
T Consensus       187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~  238 (399)
T PRK05579        187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV  238 (399)
T ss_pred             CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence            6789999998                67799999999999999999887653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=89.03  E-value=1.7  Score=36.87  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      +.+.+++|+|+ |..|+.++..++..|.+|+++.+.
T Consensus       141 ~~~~~VvIIGa-GpAGl~aA~~l~~~G~~V~vie~~  175 (471)
T PRK12810        141 RTGKKVAVVGS-GPAGLAAADQLARAGHKVTVFERA  175 (471)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCCcEEEEecC
Confidence            45679999998 999999999999999999998864

>PRK12831 putative oxidoreductase; Provisional

Probab=88.95  E-value=1.8  Score=36.76  Aligned_cols=50  Identities=14%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc--------chHHHHhhcCCcE
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA--------TRFILCQPFNIRV  187 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~--------~~~~~~~~~G~~~  187 (193)
                      ...+++++|+|+ |.+|.-++..+..+|++|.++.+..        +..+.+++.|...
T Consensus       278 ~~~gk~VvVIGg-G~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i  335 (464)
T PRK12831        278 IKVGKKVAVVGG-GNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIF  335 (464)
T ss_pred             ccCCCeEEEECC-cHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEE
Confidence            357899999998 9999999999999999998887643        1223455667643

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=88.89  E-value=1.6  Score=37.26  Aligned_cols=35  Identities=23%  Similarity=0.141  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      +.+.+++|.|+ |..|+.++..++..|.+|+++.+.
T Consensus       141 ~~~~~V~IIGa-G~aGl~aA~~L~~~g~~V~v~e~~  175 (485)
T TIGR01317       141 RTGKKVAVVGS-GPAGLAAADQLNRAGHTVTVFERE  175 (485)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEecC
Confidence            35689999998 999999999999999999988754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK08329 threonine synthase; Validated

Probab=88.88  E-value=1.6  Score=35.67  Aligned_cols=48  Identities=13%  Similarity=0.131  Sum_probs=38.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+|..++|+.|.++..+++..|.++++++.   +..|+..++.+|++.++
T Consensus       105 ~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~  155 (347)
T PRK08329        105 NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHF  155 (347)
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEE
Confidence            3455566799999999999999998887775   34578888899996554

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=88.88  E-value=2.1  Score=26.82  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHH-HHHHHCCCEEEEEe
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAI-QMGKCQGVRVFVTA  171 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i-~~~~~~g~~v~~~~  171 (193)
                      ..++..+++||+|++++.|++.- .++-..|++.+.+.
T Consensus        34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~   71 (78)
T PF12242_consen   34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVS   71 (78)
T ss_dssp             ---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE
T ss_pred             CCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEe
Confidence            34444489999999999998753 33335677777664

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=88.84  E-value=0.93  Score=36.42  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .|+++.|.|- |.+|..+++.++.+|++|+...++.
T Consensus       144 ~gktvGIiG~-G~IG~~vA~~~~~fgm~V~~~d~~~  178 (311)
T PRK08410        144 KGKKWGIIGL-GTIGKRVAKIAQAFGAKVVYYSTSG  178 (311)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhcCCEEEEECCCc
Confidence            5789999996 9999999999999999999998753

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=88.81  E-value=1.2  Score=33.46  Aligned_cols=35  Identities=11%  Similarity=0.102  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.+|+|.|+ |.+|...+..+...|++|+++.+..
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4678999998 9999999999989999999887643

>PLN00203 glutamyl-tRNA reductase

Probab=88.46  E-value=1.2  Score=38.35  Aligned_cols=42  Identities=17%  Similarity=0.271  Sum_probs=36.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP  182 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~  182 (193)
                      +.+++|+|+ |.+|.++++.+...|+ +|+++.++.++.+.+.+
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~  308 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE  308 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence            678999998 9999999999999997 79999999888776653

>PRK06815 hypothetical protein; Provisional

Probab=88.44  E-value=1.6  Score=35.06  Aligned_cols=46  Identities=20%  Similarity=0.177  Sum_probs=37.2

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|.++..+++.+|++++++..   ++.+...++.+|+..+.
T Consensus        71 vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~  119 (317)
T PRK06815         71 VITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRL  119 (317)
T ss_pred             EEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            56677899999999999999998777776   34577888899996554

>PRK07591 threonine synthase; Validated

Probab=88.43  E-value=1.5  Score=36.84  Aligned_cols=48  Identities=6%  Similarity=0.041  Sum_probs=38.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..++.+++|+.|.++..+++.+|.+.++++.   +..|...++.+|+..+.
T Consensus       138 ~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~  188 (421)
T PRK07591        138 TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVA  188 (421)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence            3456778899999999999999998777775   34678888899996554

>PRK06352 threonine synthase; Validated

Probab=88.32  E-value=2  Score=35.06  Aligned_cols=48  Identities=4%  Similarity=0.150  Sum_probs=37.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC----CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG----LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~----~~~~~~~~~~~G~~~~~  189 (193)
                      ..+|...+|+.|.++..+++.+|.+++++..    +.+|...++.+|+..++
T Consensus        76 ~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~  127 (351)
T PRK06352         76 EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIIS  127 (351)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEE
Confidence            3466667899999999999999998776663    34577888899997554

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=88.17  E-value=1.9  Score=35.92  Aligned_cols=47  Identities=13%  Similarity=-0.001  Sum_probs=38.5

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .+|..++|+.|+++...++.+|++.+++..   +..|.+.++.+|+..++
T Consensus       115 ~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~  164 (396)
T TIGR03528       115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTI  164 (396)
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEE
Confidence            577788899999999999999998777665   34578888999996554

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>PRK09224 threonine dehydratase; Reviewed

Probab=88.16  E-value=2.4  Score=36.50  Aligned_cols=47  Identities=6%  Similarity=0.054  Sum_probs=37.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      -+|..++|+.|+++...++.+|++.+++..   +..|.+.++.+|+..++
T Consensus        70 gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~  119 (504)
T PRK09224         70 GVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVL  119 (504)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence            356666799999999999999998777765   34577788999997655

>PLN02569 threonine synthase

Probab=88.12  E-value=4.5  Score=34.68  Aligned_cols=47  Identities=6%  Similarity=-0.048  Sum_probs=37.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc----chHHHHhhcCCcEE
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA----TRFILCQPFNIRVF  188 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~----~~~~~~~~~G~~~~  188 (193)
                      ..++..++|+.|.++..+++..|.++++++...    .|+..++.+|+..+
T Consensus       188 ~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi  238 (484)
T PLN02569        188 VGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVL  238 (484)
T ss_pred             cEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEE
Confidence            345667789999999999999999888777643    58888889998644

>TIGR00260 thrC threonine synthase

Probab=88.03  E-value=1.5  Score=35.26  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc----chHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA----TRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~----~~~~~~~~~G~~~~~  189 (193)
                      +...+|...+|+.|.++..+++.+|.+++++....    +++...+.+|+..+.
T Consensus        70 g~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~  123 (328)
T TIGR00260        70 GNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVA  123 (328)
T ss_pred             CCCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEE
Confidence            34467778889999999999999999888777643    466777789986553

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=88.02  E-value=3.8  Score=34.27  Aligned_cols=46  Identities=15%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH-hhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC-QPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~-~~~G~  185 (193)
                      .+.++||+|+ |-+|..++..+...|. ++++..|+.++.+.+ +++|+
T Consensus       177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~  224 (414)
T COG0373         177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA  224 (414)
T ss_pred             ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence            6788999998 9999999999999996 899999999888655 56884

>PRK06436 glycerate dehydrogenase; Provisional

Probab=87.96  E-value=1.2  Score=35.66  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+...++
T Consensus       121 ~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~  154 (303)
T PRK06436        121 YNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRS  154 (303)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCC
Confidence            4789999996 999999999999999999999875

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.96  E-value=2  Score=36.09  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=39.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      ...+++|.|. |.+|..+++.+...|.++++++.++++.+.+++.
T Consensus       230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~  273 (453)
T PRK09496        230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE  273 (453)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence            4678999997 9999999999999999999999999988887764

>PRK06382 threonine dehydratase; Provisional

Probab=87.93  E-value=3  Score=34.81  Aligned_cols=47  Identities=4%  Similarity=0.143  Sum_probs=37.3

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG  190 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~  190 (193)
                      +|..++|+.|+++...++.+|.+.+++..   +..|.+.++.+|+..++.
T Consensus        76 vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~  125 (406)
T PRK06382         76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILT  125 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEE
Confidence            55666799999999999999998777665   346778888999976553

>PRK06487 glycerate dehydrogenase; Provisional

Probab=87.90  E-value=1.1  Score=36.05  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|+++.|.|- |.+|..+++.++.+|++|+...++
T Consensus       147 ~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        147 EGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCC
Confidence            4679999996 999999999999999999988865

>PRK06932 glycerate dehydrogenase; Provisional

Probab=87.67  E-value=1.2  Score=35.85  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|.++.|+|- |.+|..+++.++.+|++|+...++
T Consensus       146 ~gktvgIiG~-G~IG~~va~~l~~fg~~V~~~~~~  179 (314)
T PRK06932        146 RGSTLGVFGK-GCLGTEVGRLAQALGMKVLYAEHK  179 (314)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCC
Confidence            3689999996 999999999999999999988764

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=87.66  E-value=1.6  Score=26.49  Aligned_cols=30  Identities=23%  Similarity=0.058  Sum_probs=25.6

Q ss_pred             EEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          145 VHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       145 i~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      |+|+ |..|+++...++..|.+|.+..+++.
T Consensus         1 IiGa-G~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGA-GISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES--SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEee-CHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            6787 99999999999999999999998754

...

>PLN02256 arogenate dehydrogenase

Probab=87.62  E-value=2.9  Score=33.52  Aligned_cols=51  Identities=16%  Similarity=0.053  Sum_probs=38.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      +...-..+.+|.|+|. |.+|...+..++..|.+|+++.+++. .+.++++|+
T Consensus        29 ~~~~~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv   79 (304)
T PLN02256         29 EELEKSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGV   79 (304)
T ss_pred             HhhccCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCC
Confidence            3334445678999996 99999999988888889999988763 355555665

>PRK06450 threonine synthase; Validated

Probab=87.61  E-value=1.9  Score=35.02  Aligned_cols=49  Identities=12%  Similarity=0.163  Sum_probs=39.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ...++..++|+.|.++..+++..|.+.++++.   +..|...++.+|+..+.
T Consensus        97 ~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~  148 (338)
T PRK06450         97 IKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVR  148 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Confidence            34566677899999999999999998777665   55688888999996543

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=87.47  E-value=1.5  Score=35.55  Aligned_cols=37  Identities=11%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|. |.+|...++.++.+|.+|+...++.+.
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~  181 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNK  181 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence            4668999997 999999999999999999999987653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=87.43  E-value=4.7  Score=30.76  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=48.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHH-CCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKC-QGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~-~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ..+++..-|.+++.=..-..-+.++++++. +|. ++++-+++++..+.++++|++.++++
T Consensus        60 ~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~P  120 (225)
T COG0569          60 EEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISP  120 (225)
T ss_pred             HhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECH
Confidence            556677777775544447788889999987 787 89999999999999999999999875

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=87.39  E-value=2.1  Score=34.75  Aligned_cols=46  Identities=15%  Similarity=0.101  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-RFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-~~~~~~~~G~  185 (193)
                      .+.+|.|+|. |.+|.+.++-++..|.+|++..+... ..+.+++.|+
T Consensus        16 ~gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~   62 (330)
T PRK05479         16 KGKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGF   62 (330)
T ss_pred             CCCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCC
Confidence            4678999997 99999999999999999988766533 4455556665

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=87.36  E-value=1.5  Score=35.19  Aligned_cols=36  Identities=11%  Similarity=-0.000  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|.|- |.+|...++.++.+|++|+...++.+
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~  170 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRK  170 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5789999996 99999999999999999999887544

>PLN02477 glutamate dehydrogenase

Probab=87.32  E-value=3.4  Score=34.60  Aligned_cols=34  Identities=21%  Similarity=0.542  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|.++.|.|- |.+|+.+++++...|++|+.+..+
T Consensus       205 ~g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~  238 (410)
T PLN02477        205 AGQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDI  238 (410)
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECC
Confidence            5789999996 999999999999999999966544

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=87.15  E-value=4.9  Score=33.19  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ...+|.|.|+.|.+|......++..|..|++..+++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            346899999779999999999999999999998754

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=86.97  E-value=1.8  Score=34.19  Aligned_cols=50  Identities=12%  Similarity=0.173  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---cchHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL---ATRFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~---~~~~~~~~~~G~~~~~  189 (193)
                      ..++| +.+++|+.|.+++..++.+|.+++++...   +.+...++.+|+..+.
T Consensus        55 ~~~~v-v~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  107 (306)
T PF00291_consen   55 GGRTV-VGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVIL  107 (306)
T ss_dssp             TTSEE-EEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEE
T ss_pred             cccee-eeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEE
Confidence            33445 77788999999999999999988777753   3466777889996553

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>PRK08639 threonine dehydratase; Validated

Probab=86.84  E-value=3.2  Score=34.86  Aligned_cols=44  Identities=7%  Similarity=-0.071  Sum_probs=36.0

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCc
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIR  186 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~  186 (193)
                      -+|..++|+.|+.+...++.+|.+.+++..   +..|.+.++.+|++
T Consensus        75 ~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~  121 (420)
T PRK08639         75 GVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGE  121 (420)
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCC
Confidence            455666799999999999999998777775   34578888999996

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=86.83  E-value=1.9  Score=32.39  Aligned_cols=46  Identities=28%  Similarity=0.230  Sum_probs=36.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHhhcCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF-ILCQPFNI  185 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~-~~~~~~G~  185 (193)
                      ....+|+|+++++|.+..|.+-..|++|.+........ +.++.+|.
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g   60 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG   60 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC
Confidence            45679999999999999999999999999888765544 33445654

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.81  E-value=8.1  Score=30.69  Aligned_cols=69  Identities=14%  Similarity=0.047  Sum_probs=46.5

Q ss_pred             CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      .|+.....+..| +..++. .|++++|.|-+..+|.-+..+++..|+.|++.-+....++.. -..+|.+++
T Consensus       139 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~-~~~ADIvi~  208 (285)
T PRK10792        139 RPCTPRGIMTLL-ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHH-VRNADLLVV  208 (285)
T ss_pred             CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHH-HhhCCEEEE
Confidence            455555555555 333332 589999999988899999999999999999887654433221 135566654

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.81  E-value=3.3  Score=31.27  Aligned_cols=52  Identities=21%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH----HHhhcCCc
Q 029425          132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI----LCQPFNIR  186 (193)
Q Consensus       132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~----~~~~~G~~  186 (193)
                      .....++++++||=+|  ++.|..++-+++..+ +|+.+.+.++-.+    .++.+|..
T Consensus        65 ~~~L~~~~g~~VLEIG--tGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~  120 (209)
T COG2518          65 LQLLELKPGDRVLEIG--TGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE  120 (209)
T ss_pred             HHHhCCCCCCeEEEEC--CCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC
Confidence            3667899999999998  567899999999877 9998888776333    34567774

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=86.76  E-value=5.8  Score=31.43  Aligned_cols=43  Identities=14%  Similarity=0.030  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP  182 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~  182 (193)
                      ..++++|+-.|+ |. |..++.+++ .|+ +|+.++.++...+.+++
T Consensus       157 ~~~g~~VLDvGc-Gs-G~lai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       157 DLKDKNVIDVGC-GS-GILSIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             cCCCCEEEEeCC-Ch-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            457899999986 55 888777766 465 89999999887776654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=86.71  E-value=2.5  Score=29.69  Aligned_cols=36  Identities=11%  Similarity=0.172  Sum_probs=29.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcchH
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATRF  177 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~~  177 (193)
                      +|.|+|++|.+|..++..+...+.  ++.+.+..+++.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~   39 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA   39 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc
Confidence            578999999999999888888774  788898886644

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK07334 threonine dehydratase; Provisional

Probab=86.67  E-value=3.1  Score=34.70  Aligned_cols=46  Identities=7%  Similarity=0.052  Sum_probs=37.7

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|.++..+++.+|.+.+++..   ++.|.+.++.+|+..++
T Consensus        74 vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~  122 (403)
T PRK07334         74 VIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVL  122 (403)
T ss_pred             EEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            45566799999999999999998777775   45688888999996554

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=86.56  E-value=2.6  Score=35.11  Aligned_cols=47  Identities=9%  Similarity=0.041  Sum_probs=38.3

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .++...+|+.|.++...++.+|.+.+++..   ++.|...++.+|+..++
T Consensus       118 ~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~  167 (399)
T PRK08206        118 TFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECII  167 (399)
T ss_pred             EEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            456677899999999999999998887776   45678888899996554

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=86.53  E-value=2.5  Score=34.01  Aligned_cols=159  Identities=16%  Similarity=0.097  Sum_probs=86.0

Q ss_pred             CCCeEEEEEeEecCCh-hhhhhhc-CCCCCCCCCCCCCC-cceEEEEEEecCC-CCCCCCCCEEEEEccC---cee----
Q 029425           26 KDDEVLIKVEATALNR-ADTLQRK-GSYPPPKGASPYPG-LECSGTILSVGKN-VSRWKVGDQVCALLGG---GGY----   94 (193)
Q Consensus        26 ~~~evlV~v~~~~v~~-~d~~~~~-~~~~~~~~~p~~lg-~e~~G~V~~vG~~-~~~~~~G~~V~~~~~~---g~~----   94 (193)
                      ..+||+|+.-+..-+. .|..+.. |..-. .+....+. .|.+=.|.+--+. ..-|+.|+..+.+...   ...    
T Consensus        29 ~GheVlVe~gAG~gsg~~D~~Y~~aGA~Iv-~ta~~vw~~~dmvvKvKEP~~~EY~ylregqiLftyLHLA~~~~lt~~l  107 (371)
T COG0686          29 HGHEVLVETGAGAGSGFDDDDYEAAGAKIV-ATAAEVWAEADMVVKVKEPLPSEYPYLREGQILFTYLHLAASPELTEAL  107 (371)
T ss_pred             CCcEEEEecCCcCCCCCChHHHHHcCCEEe-cCHHHhhcccceEEEecCCChhhhhhhcCCcEEEEEeeecCChHHHHHH
Confidence            4568999988776543 3433332 22110 01112444 5665555553222 2358999998876421   000    


Q ss_pred             -eeEEeecCCceEECCCC-----CCHHhHccCcchHHHHHHHHHHhcCC---------CCCCeEEEEcCCchHHHHHHHH
Q 029425           95 -AEKVAVPAGQVLPVPSG-----VSLKDAAAFPEVACTVWSTVFMTSHL---------SPGESFLVHGGSSGIGTFAIQM  159 (193)
Q Consensus        95 -~~~~~~~~~~~~~~p~~-----~~~~~aa~~~~~~~~a~~~l~~~~~~---------~~~~~vli~ga~g~~G~~~i~~  159 (193)
                       .+.++.-.--.+.+|++     -.+.+.|.-...-..+++-....+..         -+..++.|+|+ |.+|.-+..+
T Consensus       108 ~~~gvtaIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGG-GvvgtnaAki  186 (371)
T COG0686         108 LKSGVTAIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGG-GVVGTNAAKI  186 (371)
T ss_pred             HHcCcceEEEEEEEcCCCCCcccchHHHHhhhHHHHHHHHHHHhccCCceeEecCCCCCCCccEEEECC-ccccchHHHH
Confidence             00000000011222331     23445444433444555533222211         12345667787 9999999999


Q ss_pred             HHHCCCEEEEEeCCcchHHHHhh-cCCc
Q 029425          160 GKCQGVRVFVTAGLATRFILCQP-FNIR  186 (193)
Q Consensus       160 ~~~~g~~v~~~~~~~~~~~~~~~-~G~~  186 (193)
                      |.-+|++|.+.+.+.+|++.+.. +|-+
T Consensus       187 A~glgA~Vtild~n~~rl~~ldd~f~~r  214 (371)
T COG0686         187 AIGLGADVTILDLNIDRLRQLDDLFGGR  214 (371)
T ss_pred             HhccCCeeEEEecCHHHHhhhhHhhCce
Confidence            99999999999999999999876 5544

>PLN02503 fatty acyl-CoA reductase 2

Probab=86.43  E-value=1.5  Score=38.57  Aligned_cols=39  Identities=13%  Similarity=0.239  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHC--C-CEEEEEeCCcc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQ--G-VRVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~--g-~~v~~~~~~~~  175 (193)
                      .=.+.+|||+|++|-+|..++.-+...  . .+|++.++..+
T Consensus       116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~  157 (605)
T PLN02503        116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD  157 (605)
T ss_pred             hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence            346899999999999999888666543  3 38999998654

>PRK06260 threonine synthase; Validated

Probab=86.33  E-value=2.4  Score=35.21  Aligned_cols=49  Identities=6%  Similarity=0.060  Sum_probs=37.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC----cchHHHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL----ATRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~----~~~~~~~~~~G~~~~~  189 (193)
                      ...+|...+|+.|.++..+++..|.+++++...    ..|+..++.+|+..+.
T Consensus       115 ~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~  167 (397)
T PRK06260        115 VKTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLE  167 (397)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEE
Confidence            345666788999999999999999987777653    3467777889986443

>PRK08526 threonine dehydratase; Provisional

Probab=86.33  E-value=4.1  Score=34.04  Aligned_cols=46  Identities=7%  Similarity=0.075  Sum_probs=37.2

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|+.+...++.+|.+.+++..   +..|.+..+.+|+..++
T Consensus        71 VV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~  119 (403)
T PRK08526         71 VIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVIL  119 (403)
T ss_pred             EEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEE
Confidence            56678899999999999999998776665   34677888899997655

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=86.32  E-value=0.89  Score=31.49  Aligned_cols=51  Identities=10%  Similarity=0.012  Sum_probs=33.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchHHHHhh-cCCcEEecC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRFILCQP-FNIRVFIGF  191 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~~~~~~-~G~~~~~~~  191 (193)
                      .-+|-|+|+ |.+|..+...++..|..|..+. ++.++.+.+.. ++...+.+.
T Consensus        10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~   62 (127)
T PF10727_consen   10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDL   62 (127)
T ss_dssp             --EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----T
T ss_pred             ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccc
Confidence            457899998 9999999999999999988764 55555566554 555444443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.25  E-value=8.5  Score=30.46  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=40.9

Q ss_pred             CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      +|+.....+..|.. .++ -.|++++|.|-+..+|.=+..++...|+.|++.-+....+
T Consensus       138 ~PcTp~av~~lL~~-~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l  195 (278)
T PRK14172        138 LPCTPNSVITLIKS-LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNL  195 (278)
T ss_pred             cCCCHHHHHHHHHH-hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCH
Confidence            34444444444433 333 3689999999999999999999999999998876544433

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=86.21  E-value=3.6  Score=35.41  Aligned_cols=46  Identities=7%  Similarity=0.073  Sum_probs=37.3

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|+.+...|+.+|++.+++..   +..|.+.++.+|+..++
T Consensus        68 VV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl  116 (499)
T TIGR01124        68 VIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVL  116 (499)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE
Confidence            56667799999999999999998776665   34578888999996655

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=86.12  E-value=2.9  Score=33.35  Aligned_cols=50  Identities=16%  Similarity=0.152  Sum_probs=37.6

Q ss_pred             CCeEEEE-c-CCchHHHHHHHHHHHCCCEEEEEeCCc-----------chHHHHhhcCCcEEe
Q 029425          140 GESFLVH-G-GSSGIGTFAIQMGKCQGVRVFVTAGLA-----------TRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~-g-a~g~~G~~~i~~~~~~g~~v~~~~~~~-----------~~~~~~~~~G~~~~~  189 (193)
                      |.+.+|. | ++|+.|.++..+++.+|.+.+++.+..           .+...++.+|++.++
T Consensus        51 g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~  113 (307)
T cd06449          51 GADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRL  113 (307)
T ss_pred             CCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEE
Confidence            3344454 3 568999999999999999888877643           367788899997554

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=86.10  E-value=2.6  Score=34.59  Aligned_cols=48  Identities=10%  Similarity=0.100  Sum_probs=36.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc------chHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA------TRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~------~~~~~~~~~G~~~~~  189 (193)
                      .+++..++|+.|.++..+++.+|.+.+++....      .+...++.+|+..++
T Consensus        84 ~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~  137 (365)
T cd06446          84 RVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVP  137 (365)
T ss_pred             eEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEE
Confidence            455545569999999999999999877776532      345678899996554

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=86.05  E-value=4.3  Score=34.36  Aligned_cols=34  Identities=21%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      -.|.+|.|.|- |.+|+.+++++..+|++|+.+..
T Consensus       230 l~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        230 FEGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            36889999996 99999999999999999998854

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=86.00  E-value=3.7  Score=34.73  Aligned_cols=53  Identities=17%  Similarity=0.113  Sum_probs=39.6

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCc--------chHHHHhhcCCcEEec
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLA--------TRFILCQPFNIRVFIG  190 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~--------~~~~~~~~~G~~~~~~  190 (193)
                      +..+++++|.|+ |.+|.-++..+..+|+ +|.++.+..        ...+.+++.|.....+
T Consensus       270 ~~~g~~VvViGg-G~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~  331 (457)
T PRK11749        270 LPVGKRVVVIGG-GNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL  331 (457)
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence            347899999997 9999988888888998 888887632        2345566778765543

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=85.77  E-value=4.2  Score=33.73  Aligned_cols=49  Identities=12%  Similarity=0.164  Sum_probs=36.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc------chHHHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA------TRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~------~~~~~~~~~G~~~~~  189 (193)
                      +.+++..++|+.|.++...++.+|.+.+++....      .+...++.+|++.++
T Consensus        99 ~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~  153 (385)
T TIGR00263        99 KRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIP  153 (385)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEE
Confidence            4566645569999999999999999877775421      234568889997554

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=85.56  E-value=3.9  Score=27.18  Aligned_cols=47  Identities=19%  Similarity=0.310  Sum_probs=36.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQ  181 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~  181 (193)
                      ....++++++++-.|+ |. |..+..+++..+ .+++.++.++...+.++
T Consensus        13 ~~~~~~~~~~vldlG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   60 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGA-GS-GSITIEAARLVPNGRVYAIERNPEALRLIE   60 (124)
T ss_pred             HHcCCCCCCEEEEeCC-CC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence            3445677888988885 55 999999999864 69999999888777664

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=85.51  E-value=2.7  Score=29.36  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=27.0

Q ss_pred             HhcCCCCCCeEEEEcCCchHH--HHHHHHHHHCCCEEEEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIG--TFAIQMGKCQGVRVFVTA  171 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G--~~~i~~~~~~g~~v~~~~  171 (193)
                      ...+.++||.++++..+|.-.  .-+++.||..|++|+.++
T Consensus        97 ~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT  137 (138)
T PF13580_consen   97 ALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT  137 (138)
T ss_dssp             HHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred             HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            345689999999887766655  558899999999999876

...

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.45  E-value=9.2  Score=30.42  Aligned_cols=57  Identities=14%  Similarity=0.110  Sum_probs=40.7

Q ss_pred             CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      +|+.....+..| +..+++ .|++++|.|.+..+|.=+..++...|+.|++.-+....+
T Consensus       135 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l  192 (287)
T PRK14173        135 EPCTPAGVVRLL-KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDL  192 (287)
T ss_pred             CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCH
Confidence            344444444444 333443 689999999999999999999999999998776544433

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.43  E-value=3.4  Score=35.14  Aligned_cols=33  Identities=15%  Similarity=-0.014  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      +++++|+|. |..|.+++++++..|++|++.+..
T Consensus         8 ~~~v~v~G~-G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          8 GRRVALWGW-GREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             CCEEEEEcc-chhhHHHHHHHHHcCCEEEEEcCC
Confidence            678999997 999999999999999999999954

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.29  E-value=2  Score=35.88  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+...++.
T Consensus       150 ~gktvGIiG~-G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        150 RGKTLGIVGY-GHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCc
Confidence            4679999996 9999999999999999999998753

>TIGR02079 THD1 threonine dehydratase

Probab=85.25  E-value=4.3  Score=33.98  Aligned_cols=43  Identities=12%  Similarity=-0.049  Sum_probs=35.9

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCc
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIR  186 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~  186 (193)
                      +|..++|+.|+++...++.+|.+.+++..   +..|...++.+|+.
T Consensus        67 vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  112 (409)
T TIGR02079        67 VVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGE  112 (409)
T ss_pred             EEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCC
Confidence            56666799999999999999998777765   34577888999996

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PLN02996 fatty acyl-CoA reductase

Probab=85.07  E-value=1.7  Score=37.21  Aligned_cols=38  Identities=11%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHC--CC-EEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQ--GV-RVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~--g~-~v~~~~~~~~  175 (193)
                      =.+.+|||+|++|-+|..++.-+...  .. +|++.+|+..
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~   49 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASD   49 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCC
Confidence            35789999999999999888665443  33 7899998664

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=84.96  E-value=2.2  Score=35.34  Aligned_cols=34  Identities=9%  Similarity=0.103  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|.++.|+|. |.+|..+.+.++.+|++|+...+.
T Consensus       115 ~gktvGIIG~-G~IG~~vA~~l~a~G~~V~~~dp~  148 (378)
T PRK15438        115 HDRTVGIVGV-GNVGRRLQARLEALGIKTLLCDPP  148 (378)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCc
Confidence            6889999996 999999999999999999998753

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=84.81  E-value=3.1  Score=35.99  Aligned_cols=35  Identities=20%  Similarity=0.249  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+...++.
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~  173 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAFGMKVIAYDPYI  173 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCC
Confidence            4789999996 9999999999999999999998753

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.76  E-value=9.8  Score=30.23  Aligned_cols=54  Identities=20%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      +|+.....+..| +..+++ .|.+++|.|.+..+|.-+..++...|+.|++.-...
T Consensus       137 ~PcTp~avi~lL-~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t  191 (285)
T PRK14191        137 VPATPMGVMRLL-KHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT  191 (285)
T ss_pred             CCCcHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc
Confidence            444544455444 333433 589999999977999999999999999998875433

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=84.68  E-value=4.1  Score=33.80  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      -.|.++.|+|. |.+|..+++.++.+|++|++.+++
T Consensus       114 l~gktvGIIG~-G~IG~~va~~l~a~G~~V~~~Dp~  148 (381)
T PRK00257        114 LAERTYGVVGA-GHVGGRLVRVLRGLGWKVLVCDPP  148 (381)
T ss_pred             cCcCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCc
Confidence            36789999997 999999999999999999998864

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.58  E-value=4.4  Score=29.83  Aligned_cols=54  Identities=22%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHhhcCCcEEecC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-RFILCQPFNIRVFIGF  191 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-~~~~~~~~G~~~~~~~  191 (193)
                      -+|-.-+|+|+++++|.+...-+...|+.+++.+-... ..+.++++|-..+|.+
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~p   61 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTP   61 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEec
Confidence            35666799999999999999988889999988886555 4566778998777654

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.43  E-value=8.3  Score=30.63  Aligned_cols=52  Identities=17%  Similarity=0.084  Sum_probs=38.1

Q ss_pred             CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425          120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA  171 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~  171 (193)
                      +|+........|....---.|+++.|.|-++.+|.-...++...|++|++.-
T Consensus       138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~  189 (284)
T PRK14179        138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH  189 (284)
T ss_pred             cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence            4444444444443322224689999999999999999999999999998873

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.41  E-value=12  Score=29.78  Aligned_cols=69  Identities=14%  Similarity=0.017  Sum_probs=44.9

Q ss_pred             CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      +|+.....+..|....---.|++++|.|-+..+|.=+..++...++.|++.-+....++..- ..||.++
T Consensus       137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~-~~ADIvI  205 (282)
T PRK14182        137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEV-GRADILV  205 (282)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHH-hhCCEEE
Confidence            45554444444432222237899999999999999999999999999887765443332211 2355554

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.32  E-value=12  Score=29.71  Aligned_cols=69  Identities=13%  Similarity=0.129  Sum_probs=45.8

Q ss_pred             CcchHHHHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          120 FPEVACTVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      .|+.....+..| +..++. .|.+++|.|-+..+|.-+..++...|+.|.+.-.....+... -..||.++.
T Consensus       144 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~-~~~ADIvv~  213 (287)
T PRK14176        144 VPCTPHGVIRAL-EEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKY-TLDADILVV  213 (287)
T ss_pred             CCCcHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHH-HhhCCEEEE
Confidence            444444444444 333443 789999999988899999999999999998877544333221 145565554

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=84.29  E-value=7.1  Score=29.86  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+.++.|.|- |.+|..+++++...|++|+.+..+
T Consensus        30 ~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          30 AGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999995 999999999999999999955544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=84.24  E-value=3.7  Score=33.43  Aligned_cols=37  Identities=22%  Similarity=0.108  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~  176 (193)
                      .+.++||.|+ |-+|..++..+...|+ +++++.|+.+.
T Consensus       173 ~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        173 KKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             cCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            5789999998 9999999999999996 78898888654

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=84.19  E-value=3.3  Score=28.11  Aligned_cols=34  Identities=6%  Similarity=0.103  Sum_probs=26.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcc
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLAT  175 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~  175 (193)
                      +|.|.||+|.+|..+++++... .+++..+..++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            5889999999999999999884 457665554444

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.18  E-value=11  Score=29.78  Aligned_cols=69  Identities=10%  Similarity=0.088  Sum_probs=46.7

Q ss_pred             CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      .|+.....+..|. ..++ =.|.+++|.|-+..+|.-+..++...|++|+...+....++..- ..||.++.
T Consensus       132 ~PcTp~av~~ll~-~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~-~~ADIvI~  201 (279)
T PRK14178        132 APCTPNGIMTLLH-EYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAEL-RQADILVS  201 (279)
T ss_pred             CCCCHHHHHHHHH-HcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHH-hhCCEEEE
Confidence            4444444444443 3333 36899999999889999999999999999998886654433221 35566654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=83.82  E-value=3.9  Score=38.07  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ..+++|.|+|+ |..|++++..+...|.+|+++.+.+
T Consensus       304 ~~gkkVaVIGs-GPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGS-GPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            45899999997 9999999999999999999988643

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.30  E-value=13  Score=29.49  Aligned_cols=58  Identities=12%  Similarity=0.020  Sum_probs=41.1

Q ss_pred             CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      +|+.....+..|....--=.|++++|.|-+..+|.=+..++...|+.|++.-+....+
T Consensus       139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l  196 (284)
T PRK14177        139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNL  196 (284)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCH
Confidence            4444444444443322224689999999999999999999999999999877544433

>PLN02306 hydroxypyruvate reductase

Probab=83.26  E-value=2.7  Score=34.89  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHH-HCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~-~~g~~v~~~~~~~  174 (193)
                      .|.++.|+|- |.+|..+++.++ .+|++|+..+++.
T Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm~V~~~d~~~  199 (386)
T PLN02306        164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            4689999996 999999999985 8999999998764

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=83.24  E-value=2.8  Score=33.53  Aligned_cols=47  Identities=11%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch-HHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR-FILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~-~~~~~~~G~~  186 (193)
                      ++++|.|+|- |+-|.+..+-+|..|.+|++-.+.... .+.+++-|+.
T Consensus        17 kgK~iaIIGY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~   64 (338)
T COG0059          17 KGKKVAIIGY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK   64 (338)
T ss_pred             cCCeEEEEec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE
Confidence            5789999996 999999999999999999988886665 7788888873

>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61

Probab=83.23  E-value=4.9  Score=24.72  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=28.5

Q ss_pred             CCeEEEEcCC-chHHHHHHHHHHHCCCEEEEEeC
Q 029425          140 GESFLVHGGS-SGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       140 ~~~vli~ga~-g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      ++.+||+|++ .+....+.++|+..|..++..-.
T Consensus        32 ~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a   65 (71)
T PF10686_consen   32 PDMVLVHGGAPKGADRIAARWARERGVPVIRFPA   65 (71)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence            6788999998 89999999999999998876653

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=83.21  E-value=2.5  Score=34.00  Aligned_cols=36  Identities=28%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      +.|||++|+. .+|..|+-++.+++++|++|-.+...
T Consensus        89 lePgd~vLv~-~~G~wg~ra~D~~~r~ga~V~~v~~~  124 (385)
T KOG2862|consen   89 LEPGDNVLVV-STGTWGQRAADCARRYGAEVDVVEAD  124 (385)
T ss_pred             cCCCCeEEEE-EechHHHHHHHHHHhhCceeeEEecC
Confidence            5799999995 47999999999999999998877643

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=83.17  E-value=5  Score=32.53  Aligned_cols=52  Identities=15%  Similarity=0.137  Sum_probs=38.2

Q ss_pred             CCCeEEEE-c-CCchHHHHHHHHHHHCCCEEEEEeCC-----------cchHHHHhhcCCcEEec
Q 029425          139 PGESFLVH-G-GSSGIGTFAIQMGKCQGVRVFVTAGL-----------ATRFILCQPFNIRVFIG  190 (193)
Q Consensus       139 ~~~~vli~-g-a~g~~G~~~i~~~~~~g~~v~~~~~~-----------~~~~~~~~~~G~~~~~~  190 (193)
                      .|.+.++. | ++|+.|.++..+++.+|.+.+++...           ..+....+.+|+..++.
T Consensus        64 ~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v  128 (337)
T TIGR01274        64 QGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLD  128 (337)
T ss_pred             cCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEe
Confidence            33445443 3 55899999999999999987777654           35777788999976554

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=83.15  E-value=7.6  Score=24.52  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=27.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAG  172 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~  172 (193)
                      -.+.+++|.|. |.+|..+.+.+...+ .++++..+
T Consensus        21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45688999998 999999999999884 57776654

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=83.10  E-value=4.5  Score=37.85  Aligned_cols=35  Identities=20%  Similarity=0.059  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      ..+++|+|+|+ |..|+.++..++..|.+|.++.+.
T Consensus       537 ~tgKkVaIIGg-GPAGLsAA~~Lar~G~~VtV~Ek~  571 (1019)
T PRK09853        537 GSRKKVAVIGA-GPAGLAAAYFLARAGHPVTVFERE  571 (1019)
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHcCCeEEEEecc
Confidence            45789999998 999999999999999999998865

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.08  E-value=2.4  Score=36.43  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      +..+|+|+|| |..|++++..++.+|.+|++....+
T Consensus        14 ~~~~VIVIGA-GiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029|consen   14 KKKKVIVIGA-GLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             CCCcEEEECC-cHHHHHHHHHHHHcCCceEEEeccC
Confidence            4457899998 9999999999999999999887543

>PRK08317 hypothetical protein; Provisional

Probab=82.99  E-value=4.7  Score=30.25  Aligned_cols=49  Identities=18%  Similarity=0.144  Sum_probs=39.6

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhhc
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~~  183 (193)
                      +...++++++||-.|+ |. |..+..+++..  +.+++.++.+++..+.+++.
T Consensus        13 ~~~~~~~~~~vLdiG~-G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         13 ELLAVQPGDRVLDVGC-GP-GNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HHcCCCCCCEEEEeCC-CC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            5567888999999986 54 88899999887  36899999998887777654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=82.95  E-value=4  Score=35.36  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|+++.|.|- |.+|...++.++.+|++|+...+.
T Consensus       137 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~  170 (525)
T TIGR01327       137 YGKTLGVIGL-GRIGSIVAKRAKAFGMKVLAYDPY  170 (525)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCC
Confidence            4679999996 999999999999999999999874

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=82.64  E-value=5.5  Score=30.83  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA  171 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~  171 (193)
                      -.+.++.|.|. |.+|..+++.+..+|++++.+.
T Consensus        30 l~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~vs   62 (244)
T PF00208_consen   30 LEGKRVAIQGF-GNVGSHAARFLAELGAKVVAVS   62 (244)
T ss_dssp             STTCEEEEEES-SHHHHHHHHHHHHTTEEEEEEE
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEe
Confidence            36789999997 9999999999999999998873

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=82.62  E-value=2.4  Score=35.08  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=29.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      -.|+|.|+ |..|++++..+...|.+|.++.+.+.
T Consensus        19 ~dV~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGG-GIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cCEEEECc-CHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            46899998 99999999888889999999987543

>PLN02735 carbamoyl-phosphate synthase

Probab=82.58  E-value=3.2  Score=39.24  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCchH-----------HHHHHHHHHHCCCEEEEEeCCcc
Q 029425          125 CTVWSTVFMTSHLSPGESFLVHGGSSGI-----------GTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       125 ~~a~~~l~~~~~~~~~~~vli~ga~g~~-----------G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..+|.+-.....-+.=++|||+|+ |.+           |..++..++.+|++|+.+..+++
T Consensus         8 ~~~~~~~~~~~~~~~~kkVLiiGs-G~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~   68 (1102)
T PLN02735          8 TRAWSAATKAGKRTDLKKIMILGA-GPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPA   68 (1102)
T ss_pred             eecccccccCCcccCCCEEEEECC-CccccccceeecchHHHHHHHHHHcCCEEEEEeCCcc
Confidence            445655532222222368999997 763           55689999999999999998663

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=82.41  E-value=2.8  Score=35.60  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ..+|+|+|| |..|++++..++..|.++++..+++
T Consensus        10 ~~~VaIIGA-G~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172         10 SQHVAVIGA-GAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CCCEEEECC-cHHHHHHHHHHHhcCCeEEEEecCC
Confidence            467999998 9999999999999999999998764

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=82.11  E-value=4  Score=33.61  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=29.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+|+|+|+ |.+|...+..++.+|+++++++.+++
T Consensus        13 ~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~   46 (395)
T PRK09288         13 TRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYAN   46 (395)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            48999997 89999999999999999998887654

>PRK12831 putative oxidoreductase; Provisional

Probab=81.97  E-value=3.4  Score=35.10  Aligned_cols=35  Identities=20%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      +.+..|+|+|+ |..|+.++..++..|.+|+++.+.
T Consensus       138 ~~~~~V~IIG~-GpAGl~aA~~l~~~G~~V~v~e~~  172 (464)
T PRK12831        138 KKGKKVAVIGS-GPAGLTCAGDLAKMGYDVTIFEAL  172 (464)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEecC
Confidence            56789999998 999999999999999999888753

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=81.84  E-value=6.6  Score=31.73  Aligned_cols=49  Identities=10%  Similarity=0.171  Sum_probs=35.2

Q ss_pred             CeEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCc-----------chHHHHhhcCCcEEe
Q 029425          141 ESFLVHG-GSSGIGTFAIQMGKCQGVRVFVTAGLA-----------TRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~g-a~g~~G~~~i~~~~~~g~~v~~~~~~~-----------~~~~~~~~~G~~~~~  189 (193)
                      ++|+-.| ++|+.|.++..+++.+|.+++++....           .+...++.+|+..+.
T Consensus        65 ~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~  125 (331)
T PRK03910         65 DTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHV  125 (331)
T ss_pred             CEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEE
Confidence            4554433 247999999999999999888777633           234678889996544

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=81.76  E-value=4.6  Score=32.66  Aligned_cols=48  Identities=10%  Similarity=0.045  Sum_probs=34.8

Q ss_pred             CeEEE-EcCCchHHHHHHHHHHHCCCEEEEEeCCcc----hHHHHhhcCCcEE
Q 029425          141 ESFLV-HGGSSGIGTFAIQMGKCQGVRVFVTAGLAT----RFILCQPFNIRVF  188 (193)
Q Consensus       141 ~~vli-~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~----~~~~~~~~G~~~~  188 (193)
                      ++|+. -+++|+.|+++..+++.+|.+++++.+...    +....+.+|+...
T Consensus        71 ~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~  123 (329)
T PRK14045         71 DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETR  123 (329)
T ss_pred             CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEE
Confidence            44443 366699999999999999999888876532    3334577998643

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=81.68  E-value=17  Score=29.16  Aligned_cols=55  Identities=15%  Similarity=0.082  Sum_probs=39.3

Q ss_pred             CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|+.....+..| +..++ -.|++++|.|-+..+|.=+..++...|++|++.-+...
T Consensus       138 ~PcTp~aii~lL-~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~  193 (297)
T PRK14186        138 RSCTPAGVMRLL-RSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQ  193 (297)
T ss_pred             CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC
Confidence            344444444444 33333 36899999999999999999999999999988765443

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=81.68  E-value=3.1  Score=28.00  Aligned_cols=38  Identities=11%  Similarity=0.092  Sum_probs=31.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      ++|||.|. |.++.-+++-++.+|++++++..+++....
T Consensus         3 kkvLIanr-Geia~r~~ra~r~~Gi~tv~v~s~~d~~s~   40 (110)
T PF00289_consen    3 KKVLIANR-GEIAVRIIRALRELGIETVAVNSNPDTVST   40 (110)
T ss_dssp             SEEEESS--HHHHHHHHHHHHHTTSEEEEEEEGGGTTGH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhCCcceeccCchhcccc
Confidence            57899885 999999999999999998888877776543

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=81.67  E-value=18  Score=28.76  Aligned_cols=56  Identities=14%  Similarity=0.010  Sum_probs=40.5

Q ss_pred             CcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +|+.....+..|....---.|++++|.|-+..+|.=+..++...|++|++.-+...
T Consensus       138 ~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~  193 (282)
T PRK14180        138 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT  193 (282)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC
Confidence            45554555544533322236899999999999999999999999999988765433

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=81.39  E-value=3.3  Score=33.45  Aligned_cols=34  Identities=15%  Similarity=0.094  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHH-HCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~-~~g~~v~~~~~~  173 (193)
                      .|+++.|+|- |.+|...++.++ .+|++|+...+.
T Consensus       144 ~gktvGIiG~-G~IG~~va~~l~~~fgm~V~~~~~~  178 (323)
T PRK15409        144 HHKTLGIVGM-GRIGMALAQRAHFGFNMPILYNARR  178 (323)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHhcCCCEEEEECCC
Confidence            4689999996 999999999998 899999988765

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=81.08  E-value=7.9  Score=29.11  Aligned_cols=48  Identities=19%  Similarity=0.173  Sum_probs=37.7

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|  ++.|..+..+++..+  .+|+.+..+++..+.+++
T Consensus        70 ~~l~~~~g~~VLdIG--~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~  119 (212)
T PRK13942         70 ELLDLKEGMKVLEIG--TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK  119 (212)
T ss_pred             HHcCCCCcCEEEEEC--CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence            456788999999998  456777788887765  589999999887776654

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=81.05  E-value=4.6  Score=26.27  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=19.8

Q ss_pred             eEEEEEEecCCC---------CCCCCCCEEEEEc
Q 029425           65 CSGTILSVGKNV---------SRWKVGDQVCALL   89 (193)
Q Consensus        65 ~~G~V~~vG~~~---------~~~~~G~~V~~~~   89 (193)
                      ..|+|+++|++.         ..+++||+|+.-.
T Consensus        35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~   68 (93)
T cd00320          35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK   68 (93)
T ss_pred             eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence            479999999973         3589999997543

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=80.88  E-value=7.7  Score=32.34  Aligned_cols=60  Identities=7%  Similarity=0.047  Sum_probs=46.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +..+++.-+.+++...+-..-..++..+|.++  .++++.+.+++..+.+++.|+|.++++.
T Consensus       296 ~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~  357 (393)
T PRK10537        296 KKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQ  357 (393)
T ss_pred             HhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHH
Confidence            56677777777776554444566777788776  5799889899999999999999999764

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=80.87  E-value=3.9  Score=35.87  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ....+|.|+|+ |.+|...++.++.+|.+|++++.+++
T Consensus        20 ~~~k~IgIIGg-Gqlg~mla~aA~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         20 VSETVVGVLGG-GQLGRMLCQAASQMGIKVKVLDPLED   56 (577)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            34578999997 99999999999999999999987554

>PRK12483 threonine dehydratase; Reviewed

Probab=80.75  E-value=7.3  Score=33.75  Aligned_cols=46  Identities=7%  Similarity=0.021  Sum_probs=37.5

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|+.+...++.+|++.+++..   +..|.+..+.+|+..++
T Consensus        88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil  136 (521)
T PRK12483         88 VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVL  136 (521)
T ss_pred             EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            56666799999999999999998777665   45578888999996654

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=80.72  E-value=5.5  Score=26.35  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=18.8

Q ss_pred             EEEEEEecCCCC----CCCCCCEEEEE
Q 029425           66 SGTILSVGKNVS----RWKVGDQVCAL   88 (193)
Q Consensus        66 ~G~V~~vG~~~~----~~~~G~~V~~~   88 (193)
                      -|.|+++|++..    .+++||+|+.-
T Consensus        46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~   72 (100)
T PTZ00414         46 EGTVVAVAAATKDWTPTVKVGDTVLLP   72 (100)
T ss_pred             eeEEEEECCCCccccceecCCCEEEEc
Confidence            599999999853    48999999754

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.66  E-value=15  Score=29.24  Aligned_cols=55  Identities=15%  Similarity=0.115  Sum_probs=39.8

Q ss_pred             CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +|+.....+..|. ..++ -.|.+++|.|-+..+|.-+..++...|+.|++.-....
T Consensus       138 ~PcTp~av~~lL~-~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~  193 (284)
T PRK14190        138 LPCTPHGILELLK-EYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTK  193 (284)
T ss_pred             CCCCHHHHHHHHH-HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCch
Confidence            3444444444443 3333 46899999999999999999999999999988754433

>PLN02550 threonine dehydratase

Probab=80.62  E-value=9.6  Score=33.55  Aligned_cols=47  Identities=4%  Similarity=0.048  Sum_probs=37.5

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG  190 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~  190 (193)
                      +|..++|+-|+.+...++.+|++.+++..   +..|.+..+.+|+..++.
T Consensus       160 VV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~  209 (591)
T PLN02550        160 VICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLV  209 (591)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence            55567799999999999999998777765   445778888999976653

>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit

Probab=80.40  E-value=9  Score=33.53  Aligned_cols=59  Identities=15%  Similarity=0.079  Sum_probs=41.5

Q ss_pred             HccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH--HHHHHHHCCCEEEEEeCCcch
Q 029425          117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF--AIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       117 aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~--~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      =.....++.|...++.....+-.|.++.|.|+ .+.|-.  ..++++...+.|++.+..-+|
T Consensus       203 R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg-~G~GKT~l~~~lak~s~aDviVyvg~GER  263 (591)
T TIGR01042       203 KLPANTPLLTGQRVLDALFPCVQGGTTAIPGA-FGCGKTVISQSLSKYSNSDAIVYVGCGER  263 (591)
T ss_pred             ccCCCCccccchhhhhhccchhcCCeEEEEcC-CCcCHHHHHHHHHhccCcCEEEEEEEeec
Confidence            33455677888888888888999999999997 666754  345666666766655554443

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.02  E-value=21  Score=28.46  Aligned_cols=54  Identities=13%  Similarity=0.099  Sum_probs=38.7

Q ss_pred             CcchHHHHHHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          120 FPEVACTVWSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       120 ~~~~~~~a~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .|+.....+..|. ..++ -.|++++|.|-+..+|.=+..++...|+.|++.-+..
T Consensus       139 ~PcTp~av~~lL~-~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T  193 (288)
T PRK14171        139 IPCTALGCLAVIK-KYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT  193 (288)
T ss_pred             cCCCHHHHHHHHH-HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence            4444444444443 3333 3688999999999999999999999999988766433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		7e-41
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-36
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		2e-36
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		5e-21
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		2e-20
2cf2_D	295	Architecture Of Mammalian Fatty Acid Synthase Lengt		7e-19
1iyz_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		7e-19
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		3e-18
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		3e-16
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		3e-16
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		1e-15
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		4e-15
1iz0_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		1e-14
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		2e-14
3gms_A	340	Crystal Structure Of Putative Nadph:quinone Reducta		4e-12
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		1e-11
2vn8_A	375	Crystal Structure Of Human Reticulon 4 Interacting		2e-11
2vz8_A	2512	Crystal Structure Of Mammalian Fatty Acid Synthase		3e-11
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		4e-11
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		5e-11
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		7e-11
4eye_A	342	Crystal Structure Of A Probable Oxidoreductase From		9e-11
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		2e-10
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		2e-10
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		2e-10
4a0s_A	447	Structure Of The 2-Octenoyl-Coa Carboxylase Reducta		3e-10
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		5e-10
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		7e-09
1pqw_A	198	Putative Enoyl Reductase Domain Of Polyketide Synth		2e-08
1n9g_A	386	Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr		3e-08
3b6z_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Comple		4e-08
1h0k_A	364	Enoyl Thioester Reductase 2 Length = 364		4e-08
3gqv_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant		4e-08
1n9g_B	386	Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr		5e-08
1gu7_A	364	Enoyl Thioester Reductase From Candida Tropicalis L		5e-08
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		1e-07
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		2e-07
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		4e-07
1gyr_A	364	Mutant Form Of Enoyl Thioester Reductase From Candi		5e-07
4dvj_A	363	Crystal Structure Of A Putative Zinc-Dependent Alco		6e-07
1xa0_A	328	Crystal Structure Of Mcsg Target Apc35536 From Baci		1e-06
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-06
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-06
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		2e-06
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		5e-06
3hzz_A	467	2.4 Angstrom Crystal Structure Of Streptomyces Coll		1e-05
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		2e-05
3nx4_A	324	Crystal Structure Of The Yhdh Oxidoreductase From S		2e-05
3krt_A	456	Crystal Structure Of Putative Crotonyl Coa Reductas		4e-05
3goh_A	315	Crystal Structure Of Alcohol Dehydrogenase Superfam		6e-05
1tt7_A	330	Crystal Structure Of Bacillus Subtilis Protein Yhfp		2e-04
1o89_A	345	Crystal Structure Of E. Coli K-12 Yhdh Length = 345		2e-04
3iup_A	379	Crystal Structure Of Putative Nadph:quinone Oxidore		3e-04
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		4e-04
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		4e-04
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		4e-04

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 111/182 (60%)
Query: 10  GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTI 69
           G P+V  + +   P   + EVL++ EA  +NR D  QR+GSYPPPK ASP  GLE SG I
Sbjct: 38  GGPDVXVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEI 97
Query: 70  LSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWS 129
           + VG  VS + VGD+VC L  GG YAE   +PAGQ+LP P G     AAA PE   TVW+
Sbjct: 98  VGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWA 157
Query: 130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI 189
            +F  + L+ GES L+HGG+SGIGT AIQ+ +  G  V+ TAG   +   C+    +  I
Sbjct: 158 NLFQXAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGI 217
Query: 190 GF 191
            +
Sbjct: 218 NY 219

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M A+   +PG PE L ++EV  P   + EVL+KV A+ALNRAD +QR+G Y PP GAS  
Sbjct: 23  MLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNI 82
Query: 61  PGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
            GLE SG +  +G      WK+GD   ALL GGG A+ V VP G ++P+P G++L  AAA
Sbjct: 83  LGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAA 142
Query: 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
            PE   T +  + +  ++  G+  L+H G SG+GT AIQ+ +  G    VTAG   +  +
Sbjct: 143 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQM 202
Query: 180 CQPFNIRVFIGFGY 193
            +        GF Y
Sbjct: 203 AEKLGAAA--GFNY 214

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M A+   +PG PE L ++EV  P   + EVL+KV A+ALNRAD +QR+G Y PP GAS  
Sbjct: 7   MLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNI 66
Query: 61  PGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
            GLE SG +  +G      WK+GD   ALL GGG A+ V VP G ++P+P G++L  AAA
Sbjct: 67  LGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAA 126
Query: 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
            PE   T +  + +  ++  G+  L+H G SG+GT AIQ+ +  G    VTAG   +  +
Sbjct: 127 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQM 186
Query: 180 CQPFNIRVFIGFGY 193
            +        GF Y
Sbjct: 187 AEKLGAAA--GFNY 198

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      
Sbjct: 4   MRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLV 63
Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAF
Sbjct: 64  PGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAF 123
Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF 177
           P    T +  +F  ++L  G S LVH    G+G    Q+  C  V      G A+ F
Sbjct: 124 PMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQL--CSTVPNVTVFGTASTF 178

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 1   MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M+A+ + + G PEVL+L+ ++  P  KD +VLIKV A  +N  +T  R G+Y   K   P
Sbjct: 30  MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR-KPLLP 88
Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQV-CALLGGGGYAEKVAVPAGQVLPVPSGVSLKDA 117
           Y PG + +G I +VG N S +K GD+V  +    GGYAE        V  +P  +  K  
Sbjct: 89  YTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQG 148
Query: 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           AA      T +  +  ++ +  GES LVHG S G+G  A Q+ +  G+++  TAG
Sbjct: 149 AAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG 203

>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase Length = 295

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 14/179 (7%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ + G P  L+L ++ +P+ ++ EV+++VEA  LN AD L R G+Y         
Sbjct: 1   MKAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFI 58
Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG+E  G +            G +  AL+  GG AE+VAVP G +LP+P G+S ++AAAF
Sbjct: 59  PGMEVVGVV-----------EGRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAF 107
Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
           P    T +      +   PGE  LV   +  +GT A+Q+ +  G+RV   A    +  L
Sbjct: 108 PVSFLTAY-LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL 165

>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 14/179 (7%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ + G P  L+L ++ +P+ ++ EV+++VEA  LN AD L R G+Y         
Sbjct: 1   MKAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFI 58
Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG+E  G +            G +  AL+  GG AE+VAVP G +LP+P G+S ++AAAF
Sbjct: 59  PGMEVVGVV-----------EGRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAF 107
Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
           P    T +      +   PGE  LV   +  +GT A+Q+ +  G+RV   A    +  L
Sbjct: 108 PVSFLTAY-LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL 165

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 90/199 (45%), Gaps = 27/199 (13%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+V+   G PEVL++ ++  P+    EV ++++A ALN  D   RKG   P       
Sbjct: 1   MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHV 60
Query: 61  PGLECSGTILSVGKNVSRWKVGDQVC------------------------ALLG---GGG 93
            G + SG + +VG  V  +  GD+V                          +LG    G 
Sbjct: 61  LGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGT 120
Query: 94  YAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIG 153
           YAE V +P   + P P  +S ++AAA P    T W  V     + PG+  LV    SG+ 
Sbjct: 121 YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVS 180
Query: 154 TFAIQMGKCQGVRVFVTAG 172
             AIQ+ K  G RV  TAG
Sbjct: 181 VAAIQIAKLFGARVIATAG 199

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 2/170 (1%)
Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           K I  +  G PEVL+  + E        V+++ +A  LN  DT  R G YP P   S   
Sbjct: 3   KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGL- 61
Query: 62  GLECSGTILSVGKNVSRWKVGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           G E +G + +VG  V+R+KVGD+V    G  G Y+E   +P   ++ +   VS + AAA 
Sbjct: 62  GAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAAL 121
Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT 170
                TV   +  T  + PGE  L H  + G+G+ A Q  K  G ++  T
Sbjct: 122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGT 171

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 2/174 (1%)
Query: 4   IVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGL 63
           I   + G PEVLQ  E       ++E+ ++ +A  +N  DT  R G YPPP   S   G 
Sbjct: 5   IEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGL-GT 63
Query: 64  ECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE 122
           E +G +  VG  V   K GD+V  A    G Y+    + A +   +P+ +S + AAA   
Sbjct: 64  EAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFL 123
Query: 123 VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176
              TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T G A +
Sbjct: 124 KGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK 177

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS-YPPPKGASPY 60
           KAI   Q G P+VL+L +   P+ + ++ LIKV A +LN  D   R GS +   K  +  
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67
Query: 61  P---GLECSGTILSVGKNVSRWKVGDQVCALLGGGG----YAEKVAVPAGQVLPVPSGVS 113
           P   G + SG ++ +G +V+   +GD+V  + G       YAE V      ++     +S
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKVXGIAGFPDHPCCYAEYVCASPDTIIQKLEKLS 127
Query: 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171
              AA+ P    T    +   + +  G+  L+H G+ G+G  AIQ+ K +G  V  TA
Sbjct: 128 FLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA 184

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 9/194 (4%)
Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           K I+I + G  +V++ ++   P I ++E+LIK + T +N  ++  RKG YP  K   PY 
Sbjct: 10  KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK---PYV 66
Query: 62  -GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPA-GQVLPVPSGVSLKDAAA 119
            G E SGT+++ GK V+ ++VGDQV A +    +A+   + + G V+ +P G S ++   
Sbjct: 67  LGREASGTVVAKGKGVTNFEVGDQV-AYISNSTFAQYSKISSQGPVMKLPKGTSDEELKL 125
Query: 120 FPEVACTVWSTVFMTS---HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176
           +      V + +  T+   H+  G+  L+   + G+G    Q+ K +G      A    +
Sbjct: 126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEK 185
Query: 177 FILCQPFNIRVFIG 190
             + + +     I 
Sbjct: 186 LKIAKEYGAEYLIN 199

>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 14/178 (7%)
Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           KA V+ + G P  L+L ++ +P+ ++ EV+++VEA  LN AD L R G+Y   +   P+ 
Sbjct: 2   KAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLXRLGAYLT-RLHPPF- 57
Query: 62  GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFP 121
                G  +       R+       AL+  GG AE+VAVP G +LP+P G+S ++AAAFP
Sbjct: 58  ---IPGXEVVGVVEGRRY------AALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFP 108
Query: 122 EVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL 179
               T +      +   PGE  LV   +  +GT A+Q+ +  G+RV   A    +  L
Sbjct: 109 VSFLTAY-LALKRAQARPGEKVLVQAAAGALGTAAVQVARAXGLRVLAAASRPEKLAL 165

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 12/177 (6%)
Query: 3   AIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP- 61
           A V+ +   P V  L+++  PQ    +VL+++EA+  N  D   R G    P    P P 
Sbjct: 10  AAVVEEANGPFV--LRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGE--APHAQQPLPA 65
Query: 62  --GLECSGTILSVGKNVSRWKVGDQVCALLGG-----GGYAEKVAVPAGQVLPVPSGVSL 114
             G + +GT+++VG  V  ++VGD V  L GG     G +A+  AV A  +   P+ ++ 
Sbjct: 66  ILGXDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTX 125
Query: 115 KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171
           + A+  P V  T W  +   + +  G++ L+ GG  G+G  AIQ+   +G RVF TA
Sbjct: 126 RQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATA 182

>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From Bacillus Thuringiensis Length = 340

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
Query: 2   KAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           K I   + G+P +VLQ++      +KD+EV +++    +N +D +   G+Y         
Sbjct: 6   KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNI 65
Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG E  G + +VG  VSR  +G +V  L G G + E V   A  V+P+P  +    AA  
Sbjct: 66  PGYEGVGIVENVGAFVSRELIGKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQM 125
Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRV 167
                T W T   T +L   +  LV+   S IG    Q+ +    R+
Sbjct: 126 YINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRL 172

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 7   TQPGSPEVLQLQEVEDPQ----IKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPG 62
           T+PGS + L L  V++P     + D EV I + A  +N  D L   G YP   G +   G
Sbjct: 216 TRPGSLDGLAL--VDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASL-G 269
Query: 63  LECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE 122
            E +G ++  G  V+    GD+V  ++    +          V  +P+G S   AA+ P 
Sbjct: 270 SEGAGVVVETGPGVTGLAPGDRVMGMIPKA-FGPLAVADHRMVTRIPAGWSFARAASVPI 328
Query: 123 VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171
           V  T +  +   + L PGES LVH  + G+G  AIQ+ +  G  V+ TA
Sbjct: 329 VFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATA 377

>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein 1 In Complex With Nadph Length = 375

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 3   AIVITQPGSPEVLQL-QEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           A VI + G  EVL+  Q +  P I   +EV++KV A ++N  D   R G           
Sbjct: 24  AWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRD 83
Query: 61  P--------------GLECSGTILSVGKNVSRWKVGDQVCALL---GGGGYAEKVAVPAG 103
           P              G + SG ++  G +V  +K GD+V A +     G  +E V V   
Sbjct: 84  PLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGN 143
Query: 104 QVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP----GESFLVHGGSSGIGTFAIQM 159
           +V   P  ++   AA+ P VA T WS +     L+     G+  L+ G S G+GTFAIQ+
Sbjct: 144 EVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQV 203
Query: 160 GKCQGVRV 167
            K     V
Sbjct: 204 MKAWDAHV 211

>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 29   EVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCAL 88
            + L  V  T+LN  D +   G   P      +   +C   +   G++ S    G +V  +
Sbjct: 1561 DRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDAS----GRRVMGM 1616
Query: 89   LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGG 148
            +   G A  V +       VPS  +L++AA+ P V  T + ++ +   + PGES L+H G
Sbjct: 1617 VPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSG 1676
Query: 149  SSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ 181
            S G+G  AI +   +G RVF T G A +    Q
Sbjct: 1677 SGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQ 1709

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 32/195 (16%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ Q   P  L+++EVE P I   EVL++++A  +   D     G +P        
Sbjct: 1   MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLI 58
Query: 61  PGLECSGTILSVGKNVSRWKVGDQV--------CA----LLGG----------------G 92
           PG E  G +  VG  V+  KVGD+V        C      L G                G
Sbjct: 59  PGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDG 118
Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           GYAE     A  V+ +P  +S ++AA       T +  + +T    PGE   ++ G  G+
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIY-GIGGL 176
Query: 153 GTFAIQMGKCQGVRV 167
           G  A+Q  K  G+ V
Sbjct: 177 GHVAVQYAKAMGLNV 191

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 7   TQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECS 66
           T+  +P  L+L E   P+  + +++++  A +LN  D L  +            P  + S
Sbjct: 33  TETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGXGLDLAFPFVPASDXS 92
Query: 67  GTILSVGKNVSRWKVGDQVCAL---------------------LGG---GGYAEKVAVPA 102
           G + +VGK+V+R++ GD+V +                      LGG   G  +E V +P 
Sbjct: 93  GVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPE 152
Query: 103 GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC 162
           G  +  P  +   +A+  P    T W  +    HL  G+  +V  G+ G+  F +Q+ K 
Sbjct: 153 GWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQ-GTGGVALFGLQIAKA 211
Query: 163 QGVRVFVTAGLATRFILCQPFNI 185
            G  V VT+  ++R  L + F +
Sbjct: 212 TGAEVIVTS--SSREKLDRAFAL 232

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 83/195 (42%), Gaps = 32/195 (16%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ Q   P  L+++EVE P I   EVL++++A  +   D     G +P        
Sbjct: 1   MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLI 58
Query: 61  PGLECSGTILSVGKNVSRWKVGDQV--------CA----LLGG----------------G 92
           PG E  G +  VG  V+  KVGD+V        C      L G                G
Sbjct: 59  PGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDG 118
Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           GYAE     A  V+ +P  +S ++AA       T +  + +T    PGE   ++ G  G 
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIY-GIGGF 176
Query: 153 GTFAIQMGKCQGVRV 167
           G  A+Q  K  G+ V
Sbjct: 177 GHVAVQYAKAMGLNV 191

>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From Mycobacterium Abscessus Solved By Iodide Ion Sad Length = 342

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAI       PE L   +VE P    + V++ V+A  +   D L  KG Y         
Sbjct: 22  MKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFV 81
Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG+E +G + S  +  S  K GD+V A    GGYAE+VAV    +LP P  +   +A A 
Sbjct: 82  PGIETAGVVRSAPEG-SGIKPGDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVAL 140
Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVF--VTAGLATRFI 178
                T++        L  GE+ LV G + GIGT AIQ+ K  G +V   V    AT F+
Sbjct: 141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFV 200

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
Query: 1   MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           ++A+V    G P +V++L+ +E   ++  +V +K+ A  +N +D    +G+Y        
Sbjct: 27  VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPA 86
Query: 60  YPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVL-PVPSGVSLKDAA 118
             G E    +++VG NV+  K GD V     G G     AV + + L  VPS + L+ AA
Sbjct: 87  VGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA 146
Query: 119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVF 168
                 CT +  +     L PG+S + +  +SG+G   IQ+    G+R  
Sbjct: 147 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTI 196

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
Query: 1   MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           ++A+V    G P +V++L+ +E   ++  +V +K+ A  +N +D    +G+Y        
Sbjct: 14  VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPA 73
Query: 60  YPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVL-PVPSGVSLKDAA 118
             G E    +++VG NV+  K GD V     G G     AV + + L  VPS + L+ AA
Sbjct: 74  VGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA 133
Query: 119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVF 168
                 CT +  +     L PG+S + +  +SG+G   IQ+    G+R  
Sbjct: 134 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTI 183

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 1   MKAIVITQP---GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           +KAI   QP       + +   ++ P+ K  E+L+K+++ ++N  DT QR         A
Sbjct: 3   LKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSK---A 59
Query: 58  SPYPGLECSGTILSVGKNVSRWKVGDQVC---ALLGGGGYAEKVAVPAGQVLPVPSGVSL 114
               G +  G + SVG  V+ +  GD V    +    G  AE   +    V   P  +S 
Sbjct: 60  PRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISA 119
Query: 115 KDAAAFPEVACTVWSTVF------MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVF 168
           + A + P    T + T+F         + + G++ L+  G+ G+G+ A Q+ K  G+RV 
Sbjct: 120 EQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVI 179
Query: 169 VTAG 172
            TA 
Sbjct: 180 TTAS 183

>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf In Complex With Nadp And 2-Octenoyl-Coa Length = 447

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 48/197 (24%)
Query: 15  LQLQEVEDPQIKDDEVLIKVEATALNRADTLQ----------------RKGSYPPPKGAS 58
           L+L EV  P++  DEVL+ V A+++N                      R+G +   +   
Sbjct: 50  LRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWAT-RHDQ 108
Query: 59  PYP--GLECSGTILSVGKNVSRWKVGDQVC----------------ALLGG--------- 91
           PY   G +CSG ++  G  V RWK GD V                  +LG          
Sbjct: 109 PYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFET 168
Query: 92  --GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMT--SHLSPGESFLVHG 147
             GG AE   V A Q+LP P+ ++ ++AA  P  A T +  +     + +  G+  L+ G
Sbjct: 169 NFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWG 228
Query: 148 GSSGIGTFAIQMGKCQG 164
            S G+G++AIQ  K  G
Sbjct: 229 ASGGLGSYAIQFVKNGG 245

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 29/205 (14%)
Query: 15  LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGK 74
           L+ +++  P+ K +E+LI V+ + +   D     G +P P       G E +G ++ +G+
Sbjct: 18  LEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGE 77
Query: 75  NVSRWKVGD--------------QVCAL----------LGG----GGYAEKVAVPAGQVL 106
           NV  WK+GD              + C L          L G    G + +     A Q  
Sbjct: 78  NVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAA 137
Query: 107 PVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR 166
            +P G  L   A       TV+     +++L  G    + G + G+G+ A+Q  K  G R
Sbjct: 138 HIPQGTDLAQVAPILCAGITVYKA-LKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYR 196
Query: 167 VFVTAGLATRFILCQPFNIRVFIGF 191
           V    G   +  L +     VFI F
Sbjct: 197 VLGIDGGEGKEELFRSIGGEVFIDF 221

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 5/173 (2%)
Query: 3   AIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKG-SYPPPKGASPYP 61
           A VI + G P+    +EV+       +V ++  A  +N  DT  R G  +P   G  P  
Sbjct: 4   AAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIV 63
Query: 62  -GLECSGTILSVGKNVSRWKVGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDA-- 117
            G E +  +  VG  V+ + VG++VC  L   G Y+++   PA +++ VP  + L D   
Sbjct: 64  VGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHL 123
Query: 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT 170
           A       T    +  T  + PG+  L+H  + G+G   +   +  G  V  T
Sbjct: 124 AGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGT 176

>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase Length = 198

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 105 VLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG 164
           V+P+P  ++  +AA F     T W ++     LSPGE  L+H  + G+G  A+ + K  G
Sbjct: 4   VVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIG 63
Query: 165 VRVFVTAG 172
            R++ TAG
Sbjct: 64  ARIYTTAG 71

>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p Heterodimer From Candida Tropicalis Length = 386

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 2   KAIVITQPGSP-EVLQLQ--EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKG 56
           +A++ TQ G P +VL  Q  E++D  +  +EV++K   + +N +D  Q +G YP  P K 
Sbjct: 27  QAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAKT 86
Query: 57  A---SPYPGLECSG----TILSVGKNVSRWKVGDQV-----------CALLGGGGYAEKV 98
               +  P   C       ++ VG NVS  + GD V              LG      K+
Sbjct: 87  TGFGTAEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL 146
Query: 99  AVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGES-FLVHGGSSGIGTFA 156
             PA  +    P+G+++   A       T +  +     L+PG+  F+ +GG+S +G +A
Sbjct: 147 PNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYA 206
Query: 157 IQMGKC 162
            Q+GK 
Sbjct: 207 SQIGKL 212

>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa Length = 371

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 33/183 (18%)
Query: 23  PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVG 82
           P +  D+V ++VEA A+N +DT  R G +  P     + G + +GT+++VG +V+  +VG
Sbjct: 32  PMLPRDQVYVRVEAVAINPSDTKMR-GQFATPWA---FLGTDYAGTVVAVGSDVTHIQVG 87
Query: 83  DQV-------CALLGGGGYAEKVAVPAGQVL-PVPSGVSLKDAAAFPEVACTVWSTVFMT 134
           D+V       C      G   +  V  G+V   +P G+S + AAA P    T    + + 
Sbjct: 88  DRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLL 147
Query: 135 SHLSPGES------------FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP 182
               P  S             LV+GGS+   T  +QM +  G     T         C P
Sbjct: 148 GLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIAT---------CSP 198
Query: 183 FNI 185
            N 
Sbjct: 199 HNF 201

>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2 Length = 364

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 2   KAIVITQPGSP-EVLQLQ--EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKG 56
           +A++ TQ G P +VL  Q  E++D  +  +EV++K   + +N +D  Q +G YP  P K 
Sbjct: 5   QAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAKT 64
Query: 57  A---SPYPGLECSG----TILSVGKNVSRWKVGDQV-----------CALLGGGGYAEKV 98
               +  P   C       ++ VG NVS  + GD V              LG      K+
Sbjct: 65  TGFGTAEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL 124
Query: 99  AVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGES-FLVHGGSSGIGTFA 156
             PA  +    P+G+++   A       T +  +     L+PG+  F+ +GG+S +G +A
Sbjct: 125 PNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYA 184
Query: 157 IQMGKC 162
            Q+GK 
Sbjct: 185 SQIGKL 190

>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s With Bound Nadp Length = 371

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 33/183 (18%)
Query: 23  PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVG 82
           P +  D+V ++VEA A+N +DT  R G +  P     + G + +GT+++VG +V+  +VG
Sbjct: 32  PMLPRDQVYVRVEAVAINPSDTSMR-GQFATPWA---FLGTDYAGTVVAVGSDVTHIQVG 87
Query: 83  DQV-------CALLGGGGYAEKVAVPAGQVL-PVPSGVSLKDAAAFPEVACTVWSTVFMT 134
           D+V       C      G   +  V  G+V   +P G+S + AAA P    T    + + 
Sbjct: 88  DRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLL 147
Query: 135 SHLSPGES------------FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP 182
               P  S             LV+GGS+   T  +QM +  G     T         C P
Sbjct: 148 GLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIAT---------CSP 198
Query: 183 FNI 185
            N 
Sbjct: 199 HNF 201

>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p Heterodimer From Candida Tropicalis Length = 386

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 2   KAIVITQPGSP-EVLQLQ--EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKG 56
           +A++ TQ G P +VL  Q  E++D  +  +EV++K   + +N +D  Q +G YP  P K 
Sbjct: 27  QAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKT 86
Query: 57  A---SPYPGLECSG----TILSVGKNVSRWKVGDQV-----------CALLGGGGYAEKV 98
               +  P   C       ++ VG NVS  + GD V              LG      K+
Sbjct: 87  TGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL 146
Query: 99  AVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGES-FLVHGGSSGIGTFA 156
             PA  +    P+G+++   A       T +  +     L+PG+  F+ +GG+S +G +A
Sbjct: 147 PNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYA 206
Query: 157 IQMGKC 162
            Q+GK 
Sbjct: 207 SQIGKL 212

>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis Length = 364

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 2   KAIVITQPGSP-EVLQLQ--EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKG 56
           +A++ TQ G P +VL  Q  E++D  +  +EV++K   + +N +D  Q +G YP  P K 
Sbjct: 5   QAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKT 64
Query: 57  A---SPYPGLECSG----TILSVGKNVSRWKVGDQV-----------CALLGGGGYAEKV 98
               +  P   C       ++ VG NVS  + GD V              LG      K+
Sbjct: 65  TGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL 124
Query: 99  AVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGES-FLVHGGSSGIGTFA 156
             PA  +    P+G+++   A       T +  +     L+PG+  F+ +GG+S +G +A
Sbjct: 125 PNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYA 184
Query: 157 IQMGKC 162
            Q+GK 
Sbjct: 185 SQIGKL 190

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 37/196 (18%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+ + + G P  L+L+++  P+ K  +VLIK+EA  +  +D   R+G +   +     
Sbjct: 1   MRAMRLVEIGKP--LKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDL 58
Query: 61  -------PGLECSGTILSVGKNVSRWKVGDQV-------------CAL-----------L 89
                   G E +G I  VG  V  +  GD V             C +           L
Sbjct: 59  GVKLPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWL 118
Query: 90  G---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH 146
           G    G YAE V VP  + L     +S  +AA       T +  V   S L P ++ +V 
Sbjct: 119 GINYDGAYAEYVLVPHYKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKAS-LDPSKTLVVI 177
Query: 147 GGSSGIGTFAIQMGKC 162
           G   G+GT AIQ+ K 
Sbjct: 178 GAGGGLGTMAIQIAKA 193

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 32/195 (16%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+   G+P  L+++EV+ P     +VL+K+EA+ +   D    +G +P        
Sbjct: 7   MKAAVVHAYGAP--LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFI 64
Query: 61  PGLECSGTILSVGKNVSRWKVGDQV--------CA-----LLG---------------GG 92
           PG E  G + +VG  V+R K GD+V        C      L G                G
Sbjct: 65  PGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNG 124
Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           GYAE V      V  +P  V   + A       TV+  +  T+   PG+ ++   G  G+
Sbjct: 125 GYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTN-ARPGQ-WVAISGIGGL 182
Query: 153 GTFAIQMGKCQGVRV 167
           G  A+Q  +  G+ V
Sbjct: 183 GHVAVQYARAMGLHV 197

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+   G+P  L + EV  PQ    +V +K+EA+ +   D     G +P        
Sbjct: 3   MKAAVVRAFGAP--LTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFI 60
Query: 61  PGLECSGTILSVGKNVSRWKVGDQV--------CA-----LLG---------------GG 92
           PG E  G + +VG  VSR K GD+V        C      L G                G
Sbjct: 61  PGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNG 120
Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           GY E V      V  +P  V   + A       TV+  + +T    PG+ ++V  G  G+
Sbjct: 121 GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTD-TRPGQ-WVVISGIGGL 178
Query: 153 GTFAIQMGKCQGVRV 167
           G  A+Q  +  G+RV
Sbjct: 179 GHVAVQYARAMGLRV 193

>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida Tropicalis Length = 364

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 2   KAIVITQPGSP-EVLQLQ--EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKG 56
           +A++ TQ G P +VL  Q  E++D  +  +EV++K   + +N +D  Q +G  P  P K 
Sbjct: 5   QAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVNPSKPAKT 64
Query: 57  A---SPYPGLECSGT----ILSVGKNVSRWKVGDQV-----------CALLGGGGYAEKV 98
               +  P   C       ++ VG NVS  + GD V              LG      K+
Sbjct: 65  TGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKL 124
Query: 99  AVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGES-FLVHGGSSGIGTFA 156
             PA  +    P+G+++   A       T +  +     L+PG+  F+ +GG+S +G +A
Sbjct: 125 PNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYA 184
Query: 157 IQMGKC 162
            Q+GK 
Sbjct: 185 SQIGKL 190

>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol Dehydrogenase Protein From Rhizobium Etli Cfn 42 Length = 363

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 19  EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGAS-PYPGLECSGTILSVGKNVS 77
           E+  P     ++L++V+A ++N  D   R+ +  PP G      G + +G + +VG +V+
Sbjct: 44  ELPKPAPAGHDILVEVKAVSVNPVDYKVRRST--PPDGTDWKVIGYDAAGIVSAVGPDVT 101
Query: 78  RWKVGDQVC---ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMT 134
            ++ GD+V    +++  G  AE   V    V   P  +   +AAA P  + T W   F  
Sbjct: 102 LFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDR 161
Query: 135 SHLS---PGES--FLVHGGSSGIGTFAIQMGKCQ 163
             ++   PG +   L+ GG+ G+G+ A+Q+ + +
Sbjct: 162 LDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQR 195

>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus Stearothermophilus Length = 328

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 17/186 (9%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPK--GAS 58
            +A V+ +  +     +Q +    + + +VL++V  +++N  D L    S P  K     
Sbjct: 4   FQAFVVNKTETEFTAGVQTISXDDLPEGDVLVRVHYSSVNYKDGL---ASIPDGKIVKTX 60
Query: 59  PY-PGLECSGTILSVGKNVSRWKVGDQVCA------LLGGGGYAEKVAVPAGQVLPVPSG 111
           P+ PG++ +G ++S      R++ GD+V A      +   GGY+E   +    ++P+P G
Sbjct: 61  PFVPGIDLAGVVVS--SQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKG 118
Query: 112 VSLKDAAAFPEVACTVWSTVF-MTSH-LSPGES-FLVHGGSSGIGTFAIQMGKCQGVRVF 168
           ++LK+A A      T   ++  +  H L+P     LV G + G+G+ A+     +G  V 
Sbjct: 119 LTLKEAXAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSXLAKRGYTVE 178
Query: 169 VTAGLA 174
            + G A
Sbjct: 179 ASTGKA 184

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 1   MKAIVITQ--PGSPEVLQL-QEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           M+ +V+T+  P   E + L ++   P   D ++L++     +N +D     G Y P    
Sbjct: 3   MQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKP 62
Query: 58  SPYPGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKD 116
               G E  G ++++G + S R+ VG Q  A +  G +AE   VPA    PVPS     +
Sbjct: 63  PFDIGFEGIGEVVALGLSASARYTVG-QAVAYMAPGSFAEYTVVPASIATPVPS--VKPE 119
Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 161
                    T + ++     LS G+  LV   + G G FA+Q+ K
Sbjct: 120 YLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSK 164

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 1   MKAIVITQ--PGSPEVLQL-QEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           M+ +V+T+  P   E + L ++   P   D ++L++     +N +D     G Y P    
Sbjct: 32  MQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKP 91
Query: 58  SPYPGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKD 116
               G E  G ++++G + S R+ VG Q  A +  G +AE   VPA    PVPS     +
Sbjct: 92  PFDIGFEGIGEVVALGLSASARYTVG-QAVAYMAPGSFAEYTVVPASIATPVPS--VKPE 148
Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 161
                    T + ++     LS G+  LV   + G G FA+Q+ K
Sbjct: 149 YLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSK 193

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 1   MKAIVITQ--PGSPEVLQL-QEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           M+ +V+T+  P   E + L ++   P   D ++L++     +N +D     G Y P    
Sbjct: 24  MQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKP 83
Query: 58  SPYPGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKD 116
               G E  G ++++G + S R+ VG Q  A +  G +AE   VPA    PVPS     +
Sbjct: 84  PFDIGFEGIGEVVALGLSASARYTVG-QAVAYMAPGSFAEYTVVPASIATPVPS--VKPE 140
Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 161
                    T + ++     LS G+  LV   + G G FA+Q+ K
Sbjct: 141 YLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSK 185

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 15 LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGK 74
           +LQ ++  Q + DEVL+KV AT +   D + R   YP P  A    G E SG I ++G 
Sbjct: 19 FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPA--VLGHEGSGIIEAIGP 76
Query: 75 NVSRWKVGDQV 85
          NV+  +VGD V
Sbjct: 77 NVTELQVGDHV 87

>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus Crotonyl Coa CarboxylaseREDUCTASE Length = 467

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 46/221 (20%)
Query: 15  LQLQEVEDPQIKDDEVLIKVEATALNRADT-------------LQRKGSYPP--PKGASP 59
           + L EV  P++   E L+ V A+++N                 L+R G   P   +   P
Sbjct: 76  IHLDEVPVPELGPGEALVAVMASSVNYNSVWTSIFEPVSTFAFLERYGKLSPLTKRHDLP 135
Query: 60  YP--GLECSGTILSVGKNVSRWKVGDQVCAL---------------------------LG 90
           Y   G + +G +L  G  V+ W+ GD+V A                              
Sbjct: 136 YHIIGSDLAGVVLRTGPGVNAWQPGDEVVAHCLSVELESPDGHDDTMLDPEQRIWGFETN 195
Query: 91  GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS--HLSPGESFLVHGG 148
            GG AE   V   Q++P P  ++ ++AAA   V  T +  +   +   +  G++ L+ G 
Sbjct: 196 FGGLAEIALVKTNQLMPKPKHLTWEEAAAPGLVNSTAYRQLVSRNGAAMKQGDNVLIWGA 255
Query: 149 SSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI 189
           S G+G++A Q     G           +  +C+       I
Sbjct: 256 SGGLGSYATQFALAGGANPICVVSSPQKAEICRSMGAEAII 296

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 32/195 (16%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+   G P  L + EV  PQ    ++ + ++A+ +   D    +G +P        
Sbjct: 26  MKAAVVRAFGKP--LTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNPPFI 83
Query: 61  PGLECSGTILSVGKNVSRWKVGDQV--------CA----LLGG----------------G 92
           PG E  G + +VG  V   K GD+V        C      LGG                G
Sbjct: 84  PGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEEQLNTGYSVNG 143
Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           G+AE V      V  +P  +   + A       TV+  + +T    PG+ ++V  G  G+
Sbjct: 144 GFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKGLKVTD-TKPGD-WVVISGIGGL 201
Query: 153 GTFAIQMGKCQGVRV 167
           G  A+Q  +  G+ V
Sbjct: 202 GHMAVQYARAMGLNV 216

>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From Salmonella Enterica In Complex With Nadp Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           +A+++ Q     +  +Q +E+ Q+   +V + V  ++LN  D L   G     +     P
Sbjct: 2   QALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPXIP 61
Query: 62  GLECSGTI-------LSVGKNV--SRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGV 112
           G++ +GT+          G+ V  + W VG+        GG AE+  V    ++ +P+G+
Sbjct: 62  GIDFAGTVHASEDPRFHAGQEVLLTGWGVGENHW-----GGLAERARVKGDWLVALPAGL 116
Query: 113 SLKDA-----AAFPEVACTVWSTVFMTSHLSPGE-SFLVHGGSSGIGTFAIQMGKCQGVR 166
           S ++A     A F    C         + + P +   +V G S G+G+ A+ +    G +
Sbjct: 117 SSRNAXIIGTAGFTAXLCV---XALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQ 173
Query: 167 VFVTAG 172
           V   +G
Sbjct: 174 VAAVSG 179

>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From Streptomyces Coelicolor A3(2) Length = 456

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 84/221 (38%), Gaps = 46/221 (20%)
Query: 15  LQLQEVEDPQIKDDEVLIKVEATALNRADT-------------LQRKG--SYPPPKGASP 59
           + L +V  P++   E L+ V A+++N                 L+R G  S    +   P
Sbjct: 58  IHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLP 117
Query: 60  YP--GLECSGTILSVGKNVSRWKVGDQVCAL---------------------------LG 90
           Y   G + +G +L  G  V+ W+ GD+V A                              
Sbjct: 118 YHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETN 177
Query: 91  GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS--HLSPGESFLVHGG 148
            GG AE   V + Q++P P  +S ++AAA   V  T +  +   +   +  G++ L+ G 
Sbjct: 178 FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGA 237
Query: 149 SSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI 189
           S G+G++A Q     G           +  +C+       I
Sbjct: 238 SGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAII 278

>pdb|3GOH|A Chain A, Crystal Structure Of Alcohol Dehydrogenase Superfamily Protein (np_718042.1) From Shewanella Oneidensis At 1.55 A Resolution Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 17  LQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNV 76
           L  V+ P +  D++L++ +A  +N  D    K + P        PG++ +G I+ VG  V
Sbjct: 19  LNSVDIPALAADDILVQNQAIGINPVDWKFIKAN-PINWSNGHVPGVDGAGVIVKVGAKV 77
Query: 77  SRWKVGDQVC---ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVW 128
               +G +V    +L   G +AE   +   +V  +P  +S + AAA P    T W
Sbjct: 78  DSKXLGRRVAYHTSLKRHGSFAEFTVLNTDRVXTLPDNLSFERAAALPCPLLTAW 132

>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 15  LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGK 74
           + ++ +    +  D VLIKV  + +N  D L  K      +      G++ +GT++S   
Sbjct: 19  VHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--S 76
Query: 75  NVSRWKVGDQVCAL---LG---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVW 128
           N  R+  GD+V A    LG    GG +E  +VP   ++P+P  +SLK+A  +     T  
Sbjct: 77  NDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAXVYGTAGFTAA 136
Query: 129 STVFMTSH--LSP 139
            +V       LSP
Sbjct: 137 LSVHRLEQNGLSP 149

>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh Length = 345

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 23/187 (12%)
Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           ++A+++ Q     +  +Q +++ ++ + +V + V  ++LN  D L   G     +     
Sbjct: 22  LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMI 81
Query: 61  PGLECSGTI-------LSVGKNV--SRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSG 111
           PG++ +GT+          G+ V  + W VG+        GG AE+  V    ++ +P G
Sbjct: 82  PGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHW-----GGLAEQARVKGDWLVAMPQG 136
Query: 112 VSLKDA-----AAFPEVACTVWSTVFMTSHLSPGE-SFLVHGGSSGIGTFAIQMGKCQGV 165
           +  + A     A F  + C +       + + P +   +V G S G+G+ A+ +    G 
Sbjct: 137 LDARKAMIIGTAGFTAMLCVM---ALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY 193
Query: 166 RVFVTAG 172
           +V   +G
Sbjct: 194 QVVAVSG 200

>pdb|3IUP|A Chain A, Crystal Structure Of Putative Nadph:quinone Oxidoreductase (Yp_296108.1) From Ralstonia Eutropha Jmp134 At 1.70 A Resolution Length = 379

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 37/185 (20%)
Query: 15  LQLQEVEDPQIKDDEVLIKVEATALNRAD-----------TLQRKGSYPPPKGASPYP-- 61
           L L  ++ P    DEVLI++EA+ LN +D           T +  G+   P   +  P  
Sbjct: 20  LSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADXSTAKASGTAERPIVTARVPEG 79
Query: 62  ---------------GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVL 106
                          G E +G ++  G + +   +  +  A +GG  Y++   +PA Q L
Sbjct: 80  AXRSXAGRLDASXPVGNEGAGVVVEAGSSPAAQALXGKTVAAIGGAXYSQYRCIPADQCL 139
Query: 107 PVPSGVSLKDAAA---FPEVACTVWSTVFMTSHLSPGESFLVH-GGSSGIGTFAIQMGKC 162
            +P G +  D A+    P  A     T  +  H     S LVH   +S +G    Q+   
Sbjct: 140 VLPEGATPADGASSFVNPLTALGXVETXRLEGH-----SALVHTAAASNLGQXLNQICLK 194
Query: 163 QGVRV 167
            G+++
Sbjct: 195 DGIKL 199

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-Y 60
          KA V  + G P  L ++E+E    K  EV IK+ ATA+   D     G+   P+G  P  
Sbjct: 8  KAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGA--DPEGCFPVI 63
Query: 61 PGLECSGTILSVGKNVSRWKVGDQVCAL 88
           G E +G + SVG+ V++ K GD V  L
Sbjct: 64 LGHEGAGIVESVGEGVTKLKAGDTVIPL 91

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-Y 60
          KA V  + G P  L ++E+E    K  EV IK+ ATA+   D     G+   P+G  P  
Sbjct: 9  KAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGA--DPEGCFPVI 64
Query: 61 PGLECSGTILSVGKNVSRWKVGDQVCAL 88
           G E +G + SVG+ V++ K GD V  L
Sbjct: 65 LGHEGAGIVESVGEGVTKLKAGDTVIPL 92

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-Y 60
          KA V  + G P  L ++E+E    K  EV IK+ ATA+   D     G+   P+G  P  
Sbjct: 9  KAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGA--DPEGCFPVI 64
Query: 61 PGLECSGTILSVGKNVSRWKVGDQVCAL 88
           G E +G + SVG+ V++ K GD V  L
Sbjct: 65 LGHEGAGIVESVGEGVTKLKAGDTVIPL 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-107
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	1e-104
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	5e-98
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	1e-94
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	6e-85
4eye_A	342	Probable oxidoreductase; structural genomics, niai	1e-84
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-84
3gms_A	340	Putative NADPH:quinone reductase; structural genom	3e-84
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	1e-82
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	4e-82
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	1e-70
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	3e-65
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-64
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	6e-64
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-63
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	9e-57
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-56
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	8e-56
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	7e-55
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-54
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	7e-53
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	4e-49
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-47
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	5e-47
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	7e-47
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	7e-45
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	5e-43
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	1e-39
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	5e-34
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	3e-27
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-25
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-25
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-24
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-24
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	2e-23
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-23
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	5e-23
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-22
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	3e-22
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	1e-21
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-19
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	1e-18
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-18
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	5e-18
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	6e-18
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-17
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-17
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	2e-16
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	3e-16
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	4e-16
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	3e-11
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	2e-10
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-10
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	5e-10
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	9e-10
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	3e-09
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	7e-09
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	3e-08
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	5e-08
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	6e-08
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	8e-08
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-06
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	3e-05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	5e-05
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	8e-05

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  309 bits (795), Expect = e-107
 Identities = 84/172 (48%), Positives = 110/172 (63%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+ + +   G P+V+ + +   P   + EVL++ EA  +NR D  QR+GSYPPPK ASP 
Sbjct: 29  MRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPI 88

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
            GLE SG I+ VG  VS + VGD+VC L  GG YAE   +PAGQ+LP P G     AAA 
Sbjct: 89  LGLELSGEIVGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAAL 148

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           PE   TVW+ +F  + L+ GES L+HGG+SGIGT AIQ+ +  G  V+ TAG
Sbjct: 149 PETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG 200

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  303 bits (777), Expect = e-104
 Identities = 78/173 (45%), Positives = 106/173 (61%), Gaps = 1/173 (0%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M A+   +PG PE L ++EV  P   + EVL+KV A+ALNRAD +QR+G Y PP GAS  
Sbjct: 23  MLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNI 82

Query: 61  PGLECSGTILSVGKNV-SRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
            GLE SG +  +G      WK+GD   ALL GGG A+ V VP G ++P+P G++L  AAA
Sbjct: 83  LGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAA 142

Query: 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
            PE   T +  + +  ++  G+  L+H G SG+GT AIQ+ +  G    VTAG
Sbjct: 143 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG 195

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  286 bits (735), Expect = 5e-98
 Identities = 53/172 (30%), Positives = 84/172 (48%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      
Sbjct: 4   MRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLV 63

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAF
Sbjct: 64  PGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAF 123

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           P    T +  +F  ++L  G S LVH    G+G    Q+             
Sbjct: 124 PMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA 175

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  278 bits (714), Expect = 1e-94
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 1   MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M+A+ + + G PEVL+L+ ++  P  KD +VLIKV A  +N  +T  R G+Y        
Sbjct: 30  MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPY 89

Query: 60  YPGLECSGTILSVGKNVSRWKVGDQV-CALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAA 118
            PG + +G I +VG N S +K GD+V  +    GGYAE        V  +P  +  K  A
Sbjct: 90  TPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGA 149

Query: 119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           A      T +  +  ++ +  GES LVHG S G+G  A Q+ +  G+++  TAG
Sbjct: 150 AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG 203

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  253 bits (648), Expect = 6e-85
 Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M A V+ +   P VL+  ++  PQ    +VL+++EA+  N  D   R G  P  +   P 
Sbjct: 8   MIAAVVEEANGPFVLR--KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPA 65

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQVCALLGG-----GGYAEKVAVPAGQVLPVPSGVSL 114
             G++ +GT+++VG  V  ++VGD V  L GG     G +A+  AV A  +   P+ +++
Sbjct: 66  ILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTM 125

Query: 115 KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           + A+  P V  T W  +   + +  G++ L+ GG  G+G  AIQ+   +G RVF TA 
Sbjct: 126 RQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATAR 183

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  252 bits (646), Expect = 1e-84
 Identities = 59/172 (34%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAI       PE L   +VE P    + V++ V+A  +   D L  KG Y         
Sbjct: 22  MKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFV 81

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG+E +G + S  +  S  K GD+V A    GGYAE+VAV    +LP P  +   +A A 
Sbjct: 82  PGIETAGVVRSAPE-GSGIKPGDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVAL 140

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
                T++        L  GE+ LV G + GIGT AIQ+ K  G +V     
Sbjct: 141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVN 192

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  252 bits (646), Expect = 1e-84
 Identities = 62/199 (31%), Positives = 88/199 (44%), Gaps = 27/199 (13%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+V+   G PEVL++ ++  P+    EV ++++A ALN  D   RKG   P       
Sbjct: 1   MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHV 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLG---------------------------GGG 93
            G + SG + +VG  V  +  GD+V    G                            G 
Sbjct: 61  LGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGT 120

Query: 94  YAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIG 153
           YAE V +P   + P P  +S ++AAA P    T W  V     + PG+  LV    SG+ 
Sbjct: 121 YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVS 180

Query: 154 TFAIQMGKCQGVRVFVTAG 172
             AIQ+ K  G RV  TAG
Sbjct: 181 VAAIQIAKLFGARVIATAG 199

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  251 bits (643), Expect = 3e-84
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 1/173 (0%)

Query: 1   MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
            K I   + G+P +VLQ++      +KD+EV +++    +N +D +   G+Y        
Sbjct: 5   GKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPN 64

Query: 60  YPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAA 119
            PG E  G + +VG  VSR  +G +V  L G G + E V   A  V+P+P  +    AA 
Sbjct: 65  IPGYEGVGIVENVGAFVSRELIGKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQ 124

Query: 120 FPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
                 T W T   T +L   +  LV+   S IG    Q+ +    R+     
Sbjct: 125 MYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTR 177

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score =  245 bits (629), Expect = 1e-82
 Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 14/172 (8%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ + G P  L+L ++ +P+ ++ EV+++VEA  LN AD L R G+Y         
Sbjct: 1   MKAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFI 58

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG+E  G +            G +  AL+  GG AE+VAVP G +LP+P G+S ++AAAF
Sbjct: 59  PGMEVVGVV-----------EGRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAF 107

Query: 121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           P    T +      +   PGE  LV   +  +GT A+Q+ +  G+RV   A 
Sbjct: 108 PVSFLTAYL-ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS 158

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  246 bits (630), Expect = 4e-82
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 17/188 (9%)

Query: 1   MKAIVITQPGSPE------------VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRK 48
           MKA+++   G  +             L+   +  P     +VLIKV   ++N +D    K
Sbjct: 11  MKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIK 70

Query: 49  GSYPPPKGASPYPGLECSGTILSVGKNV-SRWKVGDQVC---ALLGGGGYAEKVAVPAGQ 104
           G Y  P+      G E  GTI++ G    ++  VG +V     L   G +AE     A  
Sbjct: 71  GQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAA 130

Query: 105 VLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG 164
            +P+   V  +D AA      T  + +F        ++F++  G+S +    I + K +G
Sbjct: 131 CIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEG 189

Query: 165 VRVFVTAG 172
            R  VT  
Sbjct: 190 FRPIVTVR 197

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  217 bits (555), Expect = 1e-70
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 26/196 (13%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+     +  +P  L+L E   P+  + +++++  A +LN  D L  +            
Sbjct: 28  MQEWST-ETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFV 86

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCAL---------------------LGG---GGYAE 96
           P  + SG + +VGK+V+R++ GD+V +                      LGG   G  +E
Sbjct: 87  PASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSE 146

Query: 97  KVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFA 156
            V +P G  +  P  +   +A+  P    T W  +    HL  G+  +V  G+ G+  F 
Sbjct: 147 YVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQ-GTGGVALFG 205

Query: 157 IQMGKCQGVRVFVTAG 172
           +Q+ K  G  V VT+ 
Sbjct: 206 LQIAKATGAEVIVTSS 221

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  202 bits (516), Expect = 3e-65
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 9/180 (5%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKAI   Q G P+VL+L +   P+ + +++LIKV A +LN  D   R GS    K     
Sbjct: 7   MKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNN 66

Query: 61  ----PGLECSGTILSVGKNVSRWKVGDQVCALLG----GGGYAEKVAVPAGQVLPVPSGV 112
                G + SG ++ +G +V+   +GD+V  + G       YAE V      ++     +
Sbjct: 67  LPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKL 126

Query: 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           S   AA+ P    T        + +  G+  L+H G+ G+G  AIQ+ K +G  V  TA 
Sbjct: 127 SFLQAASLPTAGLTAL-QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS 185

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  202 bits (515), Expect = 1e-64
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 1   MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           ++A+V    G P +V++L+ +E   ++  +V +K+ A  +N +D    +G+Y        
Sbjct: 27  VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPA 86

Query: 60  YPGLECSGTILSVGKNVSRWKVGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDAA 118
             G E    +++VG NV+  K GD V     G G +  +       ++ VPS + L+ AA
Sbjct: 87  VGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA 146

Query: 119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
                 CT +  +     L PG+S + +  +SG+G   IQ+    G+R      
Sbjct: 147 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVR 200

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  200 bits (510), Expect = 6e-64
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 5/175 (2%)

Query: 1   MKAIVITQP---GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           M+ +V+T+        V   ++   P   D ++L++     +N +D     G Y P    
Sbjct: 24  MQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKP 83

Query: 58  SPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDA 117
               G E  G ++++G + S      Q  A +  G +AE   VPA    PVPS     + 
Sbjct: 84  PFDIGFEGIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPASIATPVPSVKP--EY 141

Query: 118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
                   T + ++     LS G+  LV   + G G FA+Q+ K     V  T  
Sbjct: 142 LTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS 196

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  197 bits (504), Expect = 2e-63
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 5/177 (2%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGAS-P 59
           + A VI + G P+    +EV+       +V ++  A  +N  DT  R G   P      P
Sbjct: 2   VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPP 61

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDA 117
              G E +  +  VG  V+ + VG++VC  L   G Y+++   PA +++ VP  + L D 
Sbjct: 62  IVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDV 121

Query: 118 --AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
             A       T    +  T  + PG+  L+H  + G+G   +   +  G  V  T  
Sbjct: 122 HLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS 178

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  180 bits (460), Expect = 9e-57
 Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            K I  +  G PEVL+  + E        V+++ +A  LN  DT  R G YP P    P 
Sbjct: 2   AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAP--FLPS 59

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAA 118
             G E +G + +VG  V+R+KVGD+V       G Y+E   +P   ++ +   VS + AA
Sbjct: 60  GLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAA 119

Query: 119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           A      TV   +  T  + PGE  L H  + G+G+ A Q  K  G ++  T  
Sbjct: 120 ALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS 173

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  179 bits (456), Expect = 3e-56
 Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 4/174 (2%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
              I   + G PEVLQ  E       ++E+ ++ +A  +N  DT  R G YPPP    P 
Sbjct: 2   ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPS--LPS 59

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAA 118
             G E +G +  VG  V   K GD+V  A    G Y+    + A +   +P+ +S + AA
Sbjct: 60  GLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAA 119

Query: 119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           A      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T G
Sbjct: 120 ASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG 173

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score =  179 bits (456), Expect = 8e-56
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 32/203 (15%)

Query: 1   MKAIVIT---QPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP----- 52
             A+ +    +      L L  ++ P    DEVLI++EA+ LN +D     G+       
Sbjct: 3   HSALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAK 62

Query: 53  -----------------------PPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALL 89
                                      AS   G E +G ++  G + +   +  +  A +
Sbjct: 63  ASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAI 122

Query: 90  GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGS 149
           GG  Y++   +PA Q L +P G +  D A+      T    +  T  L    + +    +
Sbjct: 123 GGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALG-MVETMRLEGHSALVHTAAA 181

Query: 150 SGIGTFAIQMGKCQGVRVFVTAG 172
           S +G    Q+    G+++     
Sbjct: 182 SNLGQMLNQICLKDGIKLVNIVR 204

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score =  176 bits (448), Expect = 7e-55
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 7/176 (3%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            K I+I + G  +V++ ++   P I ++E+LIK + T +N  ++  RKG YP  K   PY
Sbjct: 9   QKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK---PY 65

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVS---LKD 116
             G E SGT+++ GK V+ ++VGDQV  +              G V+ +P G S   LK 
Sbjct: 66  VLGREASGTVVAKGKGVTNFEVGDQVAYISNSTFAQYSKISSQGPVMKLPKGTSDEELKL 125

Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
            AA      T  S      H+  G+  L+   + G+G    Q+ K +G      A 
Sbjct: 126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS 181

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  176 bits (449), Expect = 1e-54
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 25/197 (12%)

Query: 1   MKAIVITQPGSPE---VLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPK 55
            +A++ TQ G P+     Q  E++D  +  +EV++K   + +N +D  Q +G YP  P K
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 56  GASPY-------PGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLP 107
                        G E    ++ VG NVS  + GD V  + +  G +           + 
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123

Query: 108 V-----------PSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLV-HGGSSGIGTF 155
           +           P+G+++   A       T +  +     L+PG+ + + +GG+S +G +
Sbjct: 124 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 183

Query: 156 AIQMGKCQGVRVFVTAG 172
           A Q+GK           
Sbjct: 184 ASQIGKLLNFNSISVIR 200

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  172 bits (437), Expect = 7e-53
 Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 23/195 (11%)

Query: 1   MKAIVITQPGSPEVLQL-QEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGAS 58
             A VI + G  EVL+  Q +  P I   +EV++KV A ++N  D   R G         
Sbjct: 22  SMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMK 81

Query: 59  PY--------------PGLECSGTILSVGKNVSRWKVGDQVCALLG---GGGYAEKVAVP 101
                            G + SG ++  G +V  +K GD+V A +     G  +E V V 
Sbjct: 82  RDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVS 141

Query: 102 AGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL----SPGESFLVHGGSSGIGTFAI 157
             +V   P  ++   AA+ P VA T WS +     L      G+  L+ G S G+GTFAI
Sbjct: 142 GNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAI 201

Query: 158 QMGKCQGVRVFVTAG 172
           Q+ K     V     
Sbjct: 202 QVMKAWDAHVTAVCS 216

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  164 bits (417), Expect = 4e-49
 Identities = 46/219 (21%), Positives = 79/219 (36%), Gaps = 47/219 (21%)

Query: 1   MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M A + T+   P + + L +V  P++   E L+ V A+++N               G   
Sbjct: 43  MFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLE 102

Query: 60  Y-----------------PGLECSGTILSVGKNVSRWKVGDQVCAL-------------- 88
                              G + +G +L  G  V+ W+ GD+V A               
Sbjct: 103 RYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHND 162

Query: 89  -------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS 135
                           GG AE   V + Q++P P  +S ++AAA   V  T +  +   +
Sbjct: 163 TMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRN 222

Query: 136 --HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
              +  G++ L+ G S G+G++A Q     G        
Sbjct: 223 GAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS 261

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  156 bits (398), Expect = 1e-47
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 9/181 (4%)

Query: 1   MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M+   +    +    + L  V+ P +  D++L++ +A  +N  D    K +       + 
Sbjct: 2   MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWS--NG 59

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQVCA---LLGGGGYAEKVAVPAGQVLPVPSGVSLK 115
           + PG++ +G I+ VG  V    +G +V     L   G +AE   +   +V+ +P  +S +
Sbjct: 60  HVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFE 119

Query: 116 DAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT 175
            AAA P    T W   F    L+     L+  G   +     QM    G  V + +   +
Sbjct: 120 RAAALPCPLLTAW-QAFEKIPLTKQREVLIV-GFGAVNNLLTQMLNNAGYVVDLVSASLS 177

Query: 176 R 176
           +
Sbjct: 178 Q 178

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score =  156 bits (396), Expect = 5e-47
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 17/185 (9%)

Query: 1   MKAIVITQPGS---PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           +KAI   QP       + +   ++ P+ K  E+L+K+++ ++N  DT QR          
Sbjct: 3   LKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSKA--- 59

Query: 58  SPY-PGLECSGTILSVGKNVSRWKVGDQVCA---LLGGGGYAEKVAVPAGQVLPVPSGVS 113
            P   G +  G + SVG  V+ +  GD V         G  AE   +    V   P  +S
Sbjct: 60  -PRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNIS 118

Query: 114 LKDAAAFPEVACTVWSTVF------MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRV 167
            + A + P    T + T+F         + + G++ L+  G+ G+G+ A Q+ K  G+RV
Sbjct: 119 AEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRV 178

Query: 168 FVTAG 172
             TA 
Sbjct: 179 ITTAS 183

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  156 bits (396), Expect = 7e-47
 Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 26/191 (13%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             A+ +       V        P +  D+V ++VEA A+N +DT  R     P      +
Sbjct: 12  QTALTVNDHDEVTVWN--AAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFATPW----AF 65

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGG--------GGYAEKVAVPAGQVLPVPSGV 112
            G + +GT+++VG +V+  +VGD+V              G +++           +P G+
Sbjct: 66  LGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGL 125

Query: 113 SLKDAAAFPEVACTVWSTVFMTSHLSP------------GESFLVHGGSSGIGTFAIQMG 160
           S + AAA P    T    + +     P                LV+GGS+   T  +QM 
Sbjct: 126 SFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQML 185

Query: 161 KCQGVRVFVTA 171
           +  G     T 
Sbjct: 186 RLSGYIPIATC 196

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  153 bits (387), Expect = 7e-45
 Identities = 53/229 (23%), Positives = 80/229 (34%), Gaps = 57/229 (24%)

Query: 1   MKAIVITQ-----------PGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKG 49
             A+ +                 + L+L EV  P++  DEVL+ V A+++N         
Sbjct: 25  YLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMF 84

Query: 50  SYPPPKGASPY-----------------PGLECSGTILSVGKNVSRWKVGDQVCA----- 87
              P                         G +CSG ++  G  V RWK GD V       
Sbjct: 85  EPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHV 144

Query: 88  ------------------LLGG----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC 125
                               G     GG AE   V A Q+LP P+ ++ ++AA  P  A 
Sbjct: 145 DEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAG 204

Query: 126 TVWSTVFMTS--HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           T +  +       +  G+  L+ G S G+G++AIQ  K  G        
Sbjct: 205 TAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS 253

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score =  146 bits (370), Expect = 5e-43
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 15/185 (8%)

Query: 1   MKAIVITQPG---SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA 57
           MKA+   +P        L   E+  P     ++L++V+A ++N  D   R+ + P     
Sbjct: 23  MKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGT-- 80

Query: 58  SPY-PGLECSGTILSVGKNVSRWKVGDQV---CALLGGGGYAEKVAVPAGQVLPVPSGVS 113
                G + +G + +VG +V+ ++ GD+V    +++  G  AE   V    V   P  + 
Sbjct: 81  DWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLD 140

Query: 114 LKDAAAFPEVACTVWSTVFMTSHLSP-----GESFLVHGGSSGIGTFAIQMGK-CQGVRV 167
             +AAA P  + T W   F    ++        + L+ GG+ G+G+ A+Q+ +    + V
Sbjct: 141 WAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTV 200

Query: 168 FVTAG 172
             TA 
Sbjct: 201 IATAS 205

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score =  142 bits (359), Expect = 1e-39
 Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 7/171 (4%)

Query: 4   IVITQPGSPEVLQLQEVED--PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           +  T+PGS + L L +       + D EV I + A  +N  D L   G YP         
Sbjct: 213 LEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGV----ASL 268

Query: 62  GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFP 121
           G E +G ++  G  V+    GD+V  +     +          V  +P+G S   AA+ P
Sbjct: 269 GSEGAGVVVETGPGVTGLAPGDRVMGM-IPKAFGPLAVADHRMVTRIPAGWSFARAASVP 327

Query: 122 EVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
            V  T +  +   + L PGES LVH  + G+G  AIQ+ +  G  V+ TA 
Sbjct: 328 IVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATAS 378

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  122 bits (308), Expect = 5e-34
 Identities = 55/207 (26%), Positives = 82/207 (39%), Gaps = 38/207 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+ + + G P  L LQE+  P+ K  +VLIKVEA  +  +D   R+G +   +     
Sbjct: 1   MRAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDL 58

Query: 61  -------PGLECSGTILSVGKNVSRWKVGDQV----------C-------------ALLG 90
                   G E +G I  VG  V  +  GD V          C                 
Sbjct: 59  GVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL 118

Query: 91  G----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH 146
           G    G YAE V VP  + +     ++  +AA       T +  V   + L P ++ LV 
Sbjct: 119 GINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVV 177

Query: 147 GGSSGIGTFAIQMGKC-QGVRVFVTAG 172
           G   G+GT A+Q+ K   G  +     
Sbjct: 178 GAGGGLGTMAVQIAKAVSGATIIGVDV 204

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score =  106 bits (267), Expect = 3e-27
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 7/174 (4%)

Query: 6    ITQPGSPEVLQLQEV---EDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPG 62
            +   G    ++               + L  V  T+LN  D +   G   P      +  
Sbjct: 1535 VLSRGDLSSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLT 1594

Query: 63   LECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE 122
             +C   +   G++      G +V  ++   G A  V +       VPS  +L++AA+ P 
Sbjct: 1595 RDCMLGMEFSGRDA----SGRRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPI 1650

Query: 123  VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR 176
            V  T + ++ +   + PGES L+H GS G+G  AI +   +G RVF T G A +
Sbjct: 1651 VYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEK 1704

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  100 bits (251), Expect = 1e-25
 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 43/203 (21%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA ++ +   P  L +++V  P+ + +EVLI++    + R D    KG         P 
Sbjct: 4   SKAALLKKFSEP--LSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPI 61

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQV-------------C----------ALLGG----G 92
             G E +GTI+ VG  +++ K GD V             C           ++ G    G
Sbjct: 62  ILGHENAGTIVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNG 120

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTV---FMTSHLSPGESFLVH 146
           G++E + V + + L   + +S  +AA    +A    T    +               +V+
Sbjct: 121 GFSEYMLVKSSRWLVKLNSLSPVEAAP---LADAGTTSMGAIRQALPFISKFAEPVVIVN 177

Query: 147 GGSSGIGTFAIQMGK--CQGVRV 167
           G   G+  + IQ+ K   + + +
Sbjct: 178 GIG-GLAVYTIQILKALMKNITI 199

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 99.2 bits (248), Expect = 3e-25
 Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 40/200 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+ +   G+   + ++ V  P+   D++L+KVEA  +   D     G +P      P 
Sbjct: 24  MKAVRLESVGN---ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTP---PV 77

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQV---------------------------CALLGGG 92
             G E  G ++  G  V     G ++                             +   G
Sbjct: 78  TLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDG 137

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG- 151
           G+AE V VP  Q   +P  +     A    +AC +       S +  G +  + GG  G 
Sbjct: 138 GFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGV--DLSGIKAGSTVAILGG--GV 193

Query: 152 IGTFAIQMGKCQGV-RVFVT 170
           IG   +Q+ +  G   V ++
Sbjct: 194 IGLLTVQLARLAGATTVILS 213

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 97.3 bits (243), Expect = 1e-24
 Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA+  T+ GS     + ++  P     E+L+KV A  L  +D               P 
Sbjct: 1   MKAVQYTEIGSE--PVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPL 58

Query: 61  -PGLECSGTILSVGKNVSRWKVGDQV-------------C-------------------A 87
             G E  GT+  +G+ V+ + VGD V             C                    
Sbjct: 59  TLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPG 118

Query: 88  LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC----TVWSTVFMTSHLSPGESF 143
           L   G  AE + V + + L     +    AA    +         +   +   L PG + 
Sbjct: 119 LGSPGSMAEYMIVDSARHLVPIGDLDPVAAAP---LTDAGLTPYHAISRVLPLLGPGSTA 175

Query: 144 LVHGGSSGIGTFAIQMGK 161
           +V  G  G+G   IQ+ +
Sbjct: 176 VVI-GVGGLGHVGIQILR 192

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 97.2 bits (243), Expect = 1e-24
 Identities = 56/200 (28%), Positives = 81/200 (40%), Gaps = 38/200 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+   G+P  L + EV  PQ    +V +K+EA+ +   D     G +P        
Sbjct: 3   MKAAVVRAFGAP--LTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFI 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV-----------C-------------ALLGG----G 92
           PG E  G + +VG  VSR K GD+V           C                 G    G
Sbjct: 61  PGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNG 120

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSPGESFLVHGGS 149
           GY E V      V  +P  V   + A  P + C   TV+  +   +   PG+  ++ G  
Sbjct: 121 GYGEYVVADPNYVGLLPDKVGFVEIA--P-ILCAGVTVYKGL-KVTDTRPGQWVVISGI- 175

Query: 150 SGIGTFAIQMGKCQGVRVFV 169
            G+G  A+Q  +  G+RV  
Sbjct: 176 GGLGHVAVQYARAMGLRVAA 195

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 38/200 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ Q   P  L+++EVE P I   EVL++++A  +   D     G +P        
Sbjct: 1   MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLI 58

Query: 61  PGLECSGTILSVGKNVSRWKVGD----------------------QVC--ALLGG----G 92
           PG E  G +  VG  V+  KVGD                       +C      G    G
Sbjct: 59  PGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDG 118

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSPGESFLVHGGS 149
           GYAE     A  V+ +P  +S ++AA  P + C   T +  +   +   PGE   ++G  
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAA--P-IFCAGVTTYKAL-KVTGAKPGEWVAIYGI- 173

Query: 150 SGIGTFAIQMGKCQGVRVFV 169
            G+G  A+Q  K  G+ V  
Sbjct: 174 GGLGHVAVQYAKAMGLNVVA 193

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 38/201 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADT-LQRKGSYPPPKGASP 59
           M AI+ T+PG     +L EV+ P+    EVLIKV AT++   D  +     +   +   P
Sbjct: 5   MVAIMKTKPG--YGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPP 62

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQV---------------------CALLGG------ 91
              G E +G ++ +G  V   +VGD V                     C           
Sbjct: 63  QIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTD 122

Query: 92  GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG 151
           G +AE   VPA  +   P  +  + A     +   V +   + +    G+S L+ G  +G
Sbjct: 123 GVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDT---VLAGPISGKSVLITG--AG 177

Query: 152 -IGTFAIQMGKCQGVR-VFVT 170
            +G   I + K  G   V V+
Sbjct: 178 PLGLLGIAVAKASGAYPVIVS 198

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 93.0 bits (232), Expect = 5e-23
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 37/198 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            K ++  +      L+ +++  P+ K +E+LI V+ + +   D     G +P P      
Sbjct: 6   QKGVIFYESHGK--LEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLV 63

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV-----------C-------------ALLGG----G 92
            G E +G ++ +G+NV  WK+GD             C             A L G    G
Sbjct: 64  GGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDG 123

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSPGESFLVHGGS 149
            + +     A Q   +P G  L   A  P + C   TV+  +  +++L  G    + G +
Sbjct: 124 SFQQYATADAVQAAHIPQGTDLAQVA--P-ILCAGITVYKAL-KSANLMAGHWVAISGAA 179

Query: 150 SGIGTFAIQMGKCQGVRV 167
            G+G+ A+Q  K  G RV
Sbjct: 180 GGLGSLAVQYAKAMGYRV 197

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 92.3 bits (230), Expect = 1e-22
 Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 37/198 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGAS- 58
           +KA  + +   P  L++++V+ P+++   +V++++    +   D    +G +        
Sbjct: 16  LKAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKL 73

Query: 59  PY-PGLECSGTILSVGKNVSRWKVGDQV-------------C----------ALLGG--- 91
           PY  G E  G I  V + V   + GD V             C              G   
Sbjct: 74  PYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNI 133

Query: 92  -GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMT-SHLSPGESFLVH 146
            GG+AE +      V+ +P  +S +       +A    T +  V      L PG    + 
Sbjct: 134 DGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIV 193

Query: 147 GGSSGIGTFAIQMGKCQG 164
           G   G+G  A+Q+ K   
Sbjct: 194 GV-GGLGHIAVQLLKVMT 210

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 91.1 bits (227), Expect = 3e-22
 Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 43/202 (21%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIK-DDEVLIKVEATALNRAD--TLQRKGSYPPPKGA 57
           MK++V    G    +++ E   P+IK  DEV +K+ ++ L  +D   + + G++  P   
Sbjct: 1   MKSVVNDTDGI---VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPIT- 56

Query: 58  SPYPGLECSGTILSVGKNVSRWKVGDQV---------------------------CALLG 90
               G E SG I +VG  V     GD V                                
Sbjct: 57  ---LGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR 113

Query: 91  GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSS 150
            GG+AE + V    V  +P+ + ++D A    +   + +     +     ++ ++ G   
Sbjct: 114 DGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAF--HLAQGCENKNVIIIGA-- 169

Query: 151 G-IGTFAIQMGKCQGV-RVFVT 170
           G IG  AIQ     G   V   
Sbjct: 170 GTIGLLAIQCAVALGAKSVTAI 191

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 37/201 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADT-LQRKGSYPPPKGASP 59
           M+A+    P   E L L +   P+    E+L++VEA ++   D  + +  ++   +   P
Sbjct: 1   MRALAKLAPE--EGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPP 58

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQV---------------------------CALLGG 91
              G E SG + +VG  V R +VGD V                             +   
Sbjct: 59  LVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRD 118

Query: 92  GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG 151
           GG+AE V VPA      P  +  + AA        V +          G+S L+ G  +G
Sbjct: 119 GGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTV--YAGSGVSGKSVLITG--AG 174

Query: 152 -IGTFAIQMGKCQGVR-VFVT 170
            IG  A  + +  G   + V+
Sbjct: 175 PIGLMAAMVVRASGAGPILVS 195

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 83.8 bits (208), Expect = 1e-19
 Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 38/201 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADT-LQRKGSYPPPKGASP 59
             + V+ +      L+L++   P+ K+DEVL+++    +  +D      G         P
Sbjct: 5   NLSAVLYKQND---LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDP 61

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQV---------------------CALLG------- 90
              G E SGT++ VGKNV   K GD+V                     C  L        
Sbjct: 62  MVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPD 121

Query: 91  GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSS 150
            G  A      A     +P  VSL++ A    ++  V +     + +  G + LV G   
Sbjct: 122 DGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHAC--RRAGVQLGTTVLVIGA-- 177

Query: 151 G-IGTFAIQMGKCQGVRVFVT 170
           G IG  ++   K  G  V  T
Sbjct: 178 GPIGLVSVLAAKAYGAFVVCT 198

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 27/176 (15%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKG------SYPPP 54
           M+A+++ Q     +  +Q +E+ Q+   +V + V  ++LN  D L   G       +P  
Sbjct: 1   MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFP-- 58

Query: 55  KGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGG--------GGYAEKVAVPAGQVL 106
                 PG++ +GT+ +      R+  G +V  LL G        GG AE+  V    ++
Sbjct: 59  ----MIPGIDFAGTVHA--SEDPRFHAGQEV--LLTGWGVGENHWGGLAERARVKGDWLV 110

Query: 107 PVPSGVSLKDAAAFPEVACTVWSTVF--MTSHLSPGE-SFLVHGGSSGIGTFAIQM 159
            +P+G+S ++A        T    V     + + P +   +V G S G+G+ A+ +
Sbjct: 111 ALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVAL 166

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 80.9 bits (200), Expect = 2e-18
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 54/219 (24%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
                + +      ++++EV +P+I K  E++IKV+A  +  +D    +           
Sbjct: 31  WLGSKVWRYPE---VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPG 87

Query: 60  Y------PGLECSGTILSVGKNV------SRWKVGDQVC--------------------- 86
                   G E SG ++  G          R+++G+ VC                     
Sbjct: 88  LTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHC 147

Query: 87  ------ALLGGGGYAEKVAVPAGQVLPVPSGVSLK------DAAAFPE-VACTVWSTVFM 133
                      G +AE V V A     +     +        A +  E  +    + +  
Sbjct: 148 ENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVR 207

Query: 134 TSHLSPGESFLVHGGSSG-IGTFAIQMGKCQGVR-VFVT 170
              + PG++ ++ GG  G IG  A+ + K  G   V ++
Sbjct: 208 GGGIRPGDNVVILGG--GPIGLAAVAILKHAGASKVILS 244

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 79.3 bits (196), Expect = 5e-18
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 27/188 (14%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKG------SYPPPK 55
           +A V+ +  +     +Q +    + + +VL++V  +++N  D L          +YP   
Sbjct: 5   QAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPF-- 62

Query: 56  GASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGG--------GGYAEKVAVPAGQVLP 107
                PG++ +G ++S      R++ GD+V  +  G        GGY+E   +    ++P
Sbjct: 63  ----VPGIDLAGVVVS--SQHPRFREGDEV--IATGYEIGVTHFGGYSEYARLHGEWLVP 114

Query: 108 VPSGVSLKDAAAFPEVACTVWSTV--FMTSHLSPGE-SFLVHGGSSGIGTFAIQMGKCQG 164
           +P G++LK+A A      T   ++       L+P     LV G + G+G+ A+ M   +G
Sbjct: 115 LPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRG 174

Query: 165 VRVFVTAG 172
             V  + G
Sbjct: 175 YTVEASTG 182

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKG------SYPPPK 55
           +A+   +      + ++ +    +  D VLIKV  + +N  D L  K        YP   
Sbjct: 6   QALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPL-- 63

Query: 56  GASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGG--------GGYAEKVAVPAGQVLP 107
                 G++ +GT++S   N  R+  GD+V  +           GG +E  +VP   ++P
Sbjct: 64  ----ILGIDAAGTVVS--SNDPRFAEGDEV--IATSYELGVSRDGGLSEYASVPGDWLVP 115

Query: 108 VPSGVSLKDAAAFPEVACTVW--STVFMTSHLSPGE-SFLVHGGSSGIGTFAIQM 159
           +P  +SLK+A  +     T          + LSP + S LV G + G+G  A+ M
Sbjct: 116 LPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSM 170

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 78.0 bits (193), Expect = 2e-17
 Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 39/202 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADT-LQRKGSYPPPKGASP 59
             ++V+  PG    L+L+    P+   +EVL+++ +  +  +D      G         P
Sbjct: 8   NLSLVVHGPGD---LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKP 64

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQVCA------------LLG---------------- 90
              G E SGT+  VG +V   K GD+V               +G                
Sbjct: 65  MVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD 124

Query: 91  GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSS 150
            G         A     +P  V+ ++ A    ++  + +       ++ G   LV G  +
Sbjct: 125 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHAC--RRGGVTLGHKVLVCG--A 180

Query: 151 G-IGTFAIQMGKCQGV-RVFVT 170
           G IG   + + K  G  +V VT
Sbjct: 181 GPIGMVTLLVAKAMGAAQVVVT 202

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 68/223 (30%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEAT--------ALNRADTLQRKGSY 51
           MKAI++  P     +Q+++V++ ++    ++ I+             +N      +    
Sbjct: 1   MKAIIVKPPN--AGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNG-----KLTLS 53

Query: 52  PPPKGASPY-PGLECSGTILSVGKNVSRWKVGDQVCA----------------------- 87
             PKG      G E  G +            GD V                         
Sbjct: 54  TLPKGKDFLVLGHEAIGVVEESYHGF---SQGDLVMPVNRRGCGICRNCLVGRPDFCETG 110

Query: 88  ---LLGG----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE-VACTVW----------- 128
                G     G   E        ++ +P  +   D     + +A               
Sbjct: 111 EFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE--DIGILAQPLADIEKSIEEILEVQKR 168

Query: 129 -STVFMTSHLSPGESFLVHGGSSG-IGTFAIQMGKCQGVRVFV 169
                           LV G  +G IG     + +  G+ V++
Sbjct: 169 VPVWTCDDGTLNCRKVLVVG--TGPIGVLFTLLFRTYGLEVWM 209

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 73.0 bits (180), Expect = 2e-16
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 102 AGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 161
           +  V+P+P  ++  +AA F     T W ++     LSPGE  L+H  + G+G  A+ + K
Sbjct: 1   SDLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAK 60

Query: 162 CQGVRVFVTAG 172
             G R++ TAG
Sbjct: 61  MIGARIYTTAG 71

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 33/204 (16%), Positives = 62/204 (30%), Gaps = 48/204 (23%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADT-LQRKGSYPPPKGASP 59
           MKAI + +    +   + E   P+ +  E L++     +   D  +   G    P+G   
Sbjct: 1   MKAIAVKRG--EDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDH 58

Query: 60  Y-PGLECSGTILSVGKNVSRWKVGDQVCA------------------------------- 87
              G E  G +  V  N +  + GD V                                 
Sbjct: 59  LVLGHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERG 116

Query: 88  -LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE-VACTVW----STVFMTSHLSPGE 141
            +   G  +E    P   ++ +P   +  +     E ++ T      +    ++      
Sbjct: 117 IVGAHGYMSEFFTSPEKYLVRIPRSQA--ELGFLIEPISITEKALEHAYASRSAFDWDPS 174

Query: 142 SFLVHGGSSG-IGTFAIQMGKCQG 164
           S  V G  +G +G   + M K   
Sbjct: 175 SAFVLG--NGSLGLLTLAMLKVDD 196

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 54/210 (25%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             A+V+ +   P  L  +E E   I    +L+++ +  +  +D    +G  P      P 
Sbjct: 18  AHAMVLEKFNQP--LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRV----PL 71

Query: 61  P---GLECSGTILSVGKNVS-----RWKVGDQVCALLG---------------------- 90
           P   G E +G ++ V            K GD +    G                      
Sbjct: 72  PIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRK 131

Query: 91  --------------GGGYAEKVAV-PAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS 135
                          G Y+  + + P   VL V     L   A       T +       
Sbjct: 132 VYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYP 191

Query: 136 HLSPGESFLVHG-GSSGIGTFAIQMGKCQG 164
               G++ ++ G G   +G F + + +  G
Sbjct: 192 ESFAGKTVVIQGAG--PLGLFGVVIARSLG 219

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 41/203 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MK   +   G        E E P     + +++  A A   +D           +     
Sbjct: 1   MKGFAMLSIGKVGW---IEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMIL 57

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV---------------------CALLGG-------- 91
            G E  G ++ VG  V  +K GD+V                        +          
Sbjct: 58  -GHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVK 116

Query: 92  -GGYAEKVAVPAGQV--LPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGG 148
            G + E   V    +    +P  + L+ A   P++  T +    + +++  G++  V G 
Sbjct: 117 DGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAEL-ANIKLGDTVCVIG- 174

Query: 149 SSG-IGTFAIQMGKCQG-VRVFV 169
             G +G  ++      G  R+F 
Sbjct: 175 -IGPVGLMSVAGANHLGAGRIFA 196

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 38/189 (20%)

Query: 15  LQLQEVEDPQ-IKDDEVLIKVEATALNRADT-LQRKGSYPPPKGASPY-PGLECSGTILS 71
             L+ V+  + +K+ EV + V +T +  +D    + G   P      +  G E +G +++
Sbjct: 27  PSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIA 86

Query: 72  VGKNVSRWKVGDQVCA------------LLG----------------GGGYAEKVAVPAG 103
           V  +V   KVGD+V              L G                 G     V  PA 
Sbjct: 87  VHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAV 146

Query: 104 QVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG-IGTFAIQMGKC 162
               + + +S ++ A    ++  +       + +  G+  L+ G  +G IG   +   K 
Sbjct: 147 WCHKIGN-MSYENGAMLEPLSVALAGL--QRAGVRLGDPVLICG--AGPIGLITMLCAKA 201

Query: 163 QGV-RVFVT 170
            G   + +T
Sbjct: 202 AGACPLVIT 210

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
          + A V    G+    +LQ ++  Q + DEVL+KV AT +   D + R   YP      P 
Sbjct: 7  IIAAVTPCKGAD--FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-----PL 59

Query: 61 P---GLECSGTILSVGKNVSRWKVGDQV 85
          P   G E SG I ++G NV+  +VGD V
Sbjct: 60 PAVLGHEGSGIIEAIGPNVTELQVGDHV 87

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 56.4 bits (137), Expect = 5e-10
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           KA V  + G P  ++  EV  P  K  EV IK+ ATA+   D     G+ P       +
Sbjct: 7  CKAAVAWEAGKPLSIEEIEVAPP--KAHEVRIKIIATAVCHTDAYTLSGADPEG----CF 60

Query: 61 P---GLECSGTILSVGKNVSRWKVGDQV 85
          P   G   +G + SVG+ V++ K GD V
Sbjct: 61 PVILGHLGAGIVESVGEGVTKLKAGDTV 88

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 56.1 bits (136), Expect = 9e-10
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           KA +  + GSP  L ++E+E    K  EV I+V AT +   D                +
Sbjct: 9  CKAAIAWKTGSP--LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-----LF 61

Query: 61 P---GLECSGTILSVGKNVSRWKVGDQV 85
          P   G EC+G + SVG  V+ +K GD+V
Sbjct: 62 PVVLGHECAGIVESVGPGVTNFKPGDKV 89

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           KA V+ +   P    ++EVE    K  EV IK+ AT + R+D     G+   P      
Sbjct: 9  CKAAVLWEEKKP--FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-----L 61

Query: 61 P---GLECSGTILSVGKNVSRWKVGDQV 85
          P   G E +G + S+G+ V+  + GD+V
Sbjct: 62 PVIAGHEAAGIVESIGEGVTTVRPGDKV 89

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 2  KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
          KA V  +P  P  L+   V  P  K  EV IK+ A+ +  +D+   K   P       +P
Sbjct: 11 KAAVAWEPHKPLSLETITVAPP--KAHEVRIKILASGICGSDSSVLKEIIPS-----KFP 63

Query: 62 ---GLECSGTILSVGKNVSRWKVGDQV 85
             G E  G + S+G  V+  K GD+V
Sbjct: 64 VILGHEAVGVVESIGAGVTCVKPGDKV 90

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           KA V  +   P  L ++E+E      +E+ IK+ AT +   D                +
Sbjct: 9  CKAAVAWEANKP--LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD----GF 62

Query: 61 P---GLECSGTILSVGKNVSRWKVGDQV 85
          P   G E +G + SVG  V+ ++ G++V
Sbjct: 63 PVVLGHEGAGIVESVGPGVTEFQPGEKV 90

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 51/209 (24%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
                  P     L        +   ++V I++    +   D  Q K       G S YP
Sbjct: 11  TGWAARDPSGI--LSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDL----GMSNYP 64

Query: 62  ---GLECSGTILSVGKNVSRWKVGDQV----------------------CALLGG----- 91
              G E  G ++ VG +VS++ VGD V                      C          
Sbjct: 65  MVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDV 124

Query: 92  --------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSPG 140
                   GG+A+   V    V+ +P G++++ AA  P + C   TV+S +       PG
Sbjct: 125 YINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAA--P-LLCAGVTVYSPLSHFGLKQPG 181

Query: 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFV 169
               +  G  G+G   +++ K  G  V V
Sbjct: 182 LRGGI-LGLGGVGHMGVKIAKAMGHHVTV 209

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 44/212 (20%), Positives = 68/212 (32%), Gaps = 56/212 (26%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           K   I         +  +     +   +VLI +    +  +D       +        YP
Sbjct: 6   KGFAIFSKDEH--FKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEW----KEGIYP 59

Query: 62  ---GLECSGTILSVGKNVSRWKVGDQV-----------CA-------------------- 87
              G E +G I  VGK V ++K+GD V           C                     
Sbjct: 60  MIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCL 119

Query: 88  --LLGG----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLS 138
                     GGY+  + V    V+ V     L+  A  P + C   T +S     S ++
Sbjct: 120 DSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVA--P-LLCAGITTYSP-LKFSKVT 175

Query: 139 PGESFLVHG-GSSGIGTFAIQMGKCQGVRVFV 169
            G    V G G  G+G+ A++     G  V V
Sbjct: 176 KGTKVGVAGFG--GLGSMAVKYAVAMGAEVSV 205

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 54/211 (25%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           KA+       P  L+  ++   +   ++V I++    +  +D  Q +  +      + YP
Sbjct: 24  KAVGAYSAKQP--LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEW----AGTVYP 77

Query: 62  ---GLECSGTILSVGKNVSRWKVGDQV----------------------CALLGG----- 91
              G E  G +++VG  V ++  GD V                      C  + G     
Sbjct: 78  CVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSP 137

Query: 92  ---------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSP 139
                    GGY++++ V    VL +        A A P + C   T +S         P
Sbjct: 138 TPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVA-P-LLCAGITTYSP-LRHWQAGP 194

Query: 140 GESFLVHG-GSSGIGTFAIQMGKCQGVRVFV 169
           G+   V G G  G+G   I++    G  V  
Sbjct: 195 GKKVGVVGIG--GLGHMGIKLAHAMGAHVVA 223

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 43/209 (20%), Positives = 66/209 (31%), Gaps = 51/209 (24%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
                        L           +++V  KV    +  +D    K  +    G S YP
Sbjct: 18  FGWAARDQSGH--LSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDW----GFSMYP 71

Query: 62  ---GLECSGTILSVGKNVSRWKVGDQV-----------CA-------------------- 87
              G E  G +  VG  V +  VGD+V           C                     
Sbjct: 72  LVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASI 131

Query: 88  -LLGG---GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSPG 140
              G    GGY+  +      ++  P  + L   A  P + C   TV+S +       PG
Sbjct: 132 YHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGA--P-LLCAGITVYSPLKYFGLDEPG 188

Query: 141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFV 169
           +   +  G  G+G  A++  K  G +V V
Sbjct: 189 KHIGI-VGLGGLGHVAVKFAKAFGSKVTV 216

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 47/211 (22%), Positives = 74/211 (35%), Gaps = 53/211 (25%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
           + I I      +  +  + +     D ++ IK+EA  +  +D     G +    G    P
Sbjct: 8   EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHW----GNMKMP 63

Query: 62  ---GLECSGTILSVGKNV-SRWKVGDQV----------------------CALLGG---- 91
              G E  G ++ +G    S  KVG +V                      C         
Sbjct: 64  LVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQ 123

Query: 92  ---------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC---TVWSTVFMTSHLSP 139
                    GGYA  V V    V+P+P  +    AA  P + C   TV+S   + +   P
Sbjct: 124 PYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAA--P-LLCGGLTVYSP-LVRNGCGP 179

Query: 140 GESFLVHG-GSSGIGTFAIQMGKCQGVRVFV 169
           G+   + G G  GIG+    + K  G   +V
Sbjct: 180 GKKVGIVGLG--GIGSMGTLISKAMGAETYV 208

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 60/221 (27%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKD-------DEVLIKVEATALNRADTLQRKGSYPP 53
            + +V    G  EV   Q+++ P+++D         V++KV +T +  +D    +G    
Sbjct: 3   NRGVVYLGSGKVEV---QKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA 59

Query: 54  PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCA-------------------------- 87
             G     G E +G ++  G++V   ++GD V                            
Sbjct: 60  QVGLVL--GHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPA 117

Query: 88  ---------LLGG--GGYAEKVAVPAGQV--LPVPSGVS----LKDAAAFPEVACTVWST 130
                     +G   GG AE V VP      L +P        ++D     ++  T +  
Sbjct: 118 RAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHG 177

Query: 131 VFMTSHLSPGESFLVHGGSSG-IGTFAIQMGKCQGV-RVFV 169
             +T+ + PG +  V G  +G +G  A    +  G   V V
Sbjct: 178 A-VTAGVGPGSTVYVAG--AGPVGLAAAASARLLGAAVVIV 215

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDD------EVLIKVEATALNRADTLQRKGSYPPP 54
           K++V        V   + V  P+++ +       V++KV +T +  +D    +G +  P
Sbjct: 3  NKSVVYHGTRDLRV---ETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVP 59

Query: 55 KGASPYPGLECSGTILSVGKNVSRWKVGDQVCA 87
          KG     G E +G ++  G +V    +GD V  
Sbjct: 60 KGHVL--GHEITGEVVEKGSDVELMDIGDLVSV 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.93
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.63
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.4
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.69
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.6
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.54
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.49
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.49
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.42
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.4
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.37
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.31
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.25
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.19
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.12
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.06
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.0
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.96
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.93
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.93
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.92
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.91
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.91
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.9
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.9
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.9
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.89
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.88
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.86
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.86
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.86
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.85
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.85
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.84
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.84
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.84
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.84
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.82
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.81
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.8
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.8
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.8
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.79
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.79
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.78
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.78
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.78
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.78
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.75
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.75
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.75
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.75
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.74
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.74
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.72
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.72
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.72
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.71
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.71
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.71
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.7
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.7
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.7
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.7
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.7
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.69
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.69
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.69
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.69
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.69
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.68
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.68
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.67
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.67
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.67
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.67
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.65
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.65
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.65
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.65
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.65
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.65
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.64
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.63
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.62
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.61
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.61
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.61
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.6
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.6
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.6
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.58
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.58
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.58
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.58
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.58
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.57
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.57
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.56
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.56
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.56
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.53
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.53
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.52
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.52
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.52
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.5
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.5
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.46
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.46
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.43
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.43
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.43
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.4
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.37
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.37
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.36
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.35
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.35
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.34
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.33
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.33
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.32
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.31
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.31
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.31
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.3
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.29
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.28
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.28
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.25
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.25
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.25
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.23
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.23
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.22
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.21
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.2
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.2
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.18
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.17
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.17
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.17
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.17
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.15
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.15
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.15
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.14
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.13
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.11
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.11
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.1
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.08
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.08
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.08
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.04
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.03
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.03
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.03
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.01
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.99
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.99
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.97
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.96
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.96
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.95
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.92
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.91
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.89
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.89
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.89
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.87
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	95.86
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.86
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.85
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.84
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.83
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.82
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.8
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.8
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.77
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.74
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.72
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.72
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.71
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.7
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.69
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.69
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.65
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.64
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.6
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.59
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	95.57
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.52
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.48
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.47
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.46
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.45
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.45
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.42
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.39
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.37
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	95.32
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.25
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	95.23
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.22
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.22
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.17
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.16
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.15
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	95.15
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.14
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.1
4f6c_A	427	AUSA reductase domain protein; thioester reductase	95.09
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.08
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.99
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.96
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	94.94
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	94.93
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	94.86
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	94.83
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.83
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.81
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.78
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	94.77
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	94.74
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.73
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.7
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.65
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.64
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	94.6
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	94.58
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	94.57
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.53
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	94.52
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	94.46
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	94.43
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	94.39
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	94.36
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	94.35
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.33
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	94.3
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.22
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.2
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	94.16
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.12
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	94.09
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	94.06
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	94.05
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	94.04
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.01
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	94.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	93.97
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	93.95
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	93.93
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	93.82
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.78
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.77
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	93.77
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.74
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	93.74
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	93.73
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	93.7
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	93.69
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.68
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	93.67
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.63
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	93.53
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	93.35
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	93.35
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	93.34
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.31
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	93.28
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	93.25
4f6l_B	508	AUSA reductase domain protein; thioester reductase	93.24
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	93.22
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	93.16
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	93.16
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	93.15
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	93.11
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.08
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	92.97
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	92.97
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	92.91
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	92.86
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.86
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	92.75
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.7
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	92.6
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	92.56
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	92.54
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	92.41
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	92.39
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	92.37
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	92.27
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	92.17
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.09
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	91.92
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	91.9
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	91.67
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	91.58
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	91.52
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.4
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	91.27
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	91.23
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	91.13
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	91.08
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	91.03
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	91.01
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	91.0
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	90.98
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	90.93
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	90.91
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	90.9
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.87
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.86
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.83
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	90.73
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	90.71
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	90.6
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	90.57
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	90.57
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	90.54
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	90.52
3qha_A	296	Putative oxidoreductase; seattle structural genomi	90.52
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	90.51
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	90.5
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	90.45
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.45
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	90.4
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	90.39
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	90.38
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.36
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	90.34
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	90.02
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	90.0
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	89.91
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	89.9
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	89.72
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	89.68
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	89.65
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	89.59
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	89.54
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	89.54
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	89.52
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	89.51
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	89.45
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	89.26
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	89.23
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	89.23
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	89.19
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	89.16
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	89.02
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	88.77
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	88.75
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	88.59
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	88.54
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	88.49
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.42
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	88.37
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	88.36
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	88.33
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	88.33
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	88.32
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	88.14
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	88.1
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	88.09
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	88.08
3on5_A	362	BH1974 protein; structural genomics, joint center	88.03
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	88.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	87.98
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	87.9
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	87.9
1lnq_A	336	MTHK channels, potassium channel related protein;	87.82
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	87.52
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	87.32
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	87.31
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	87.25
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	87.2
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	87.09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	87.03
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	87.0
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	86.94
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	86.8
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	86.6
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	86.59
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	86.59
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	86.42
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	86.41
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	86.35
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	86.3
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	86.27
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	86.19
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	86.18
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	86.17
4ezb_A	317	Uncharacterized conserved protein; structural geno	86.13
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	86.06
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	85.84
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	85.81
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	85.79
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	85.77
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	85.7
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	85.62
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	85.56
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	85.45
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	85.34
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	85.27
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	85.22
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	85.11
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	84.92
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	84.89
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	84.81
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	84.79
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	84.66
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	84.65
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	84.5
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	84.4
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	84.31
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	84.29
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	84.28
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	84.1
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	84.01
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	83.9
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	83.84
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	83.71
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	83.67
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	83.31
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	83.26
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	83.19
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	83.14
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	83.13

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.9e-43  Score=285.14  Aligned_cols=193  Identities=45%  Similarity=0.762  Sum_probs=184.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.|+.+++++.+.|+|+++||+|||.++++|++|+..+.|.++....+|.++|||++|+|+++|+++.+|+
T Consensus        29 MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~  108 (353)
T 4dup_A           29 MRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGYA  108 (353)
T ss_dssp             EEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTTCCSCC
T ss_pred             eeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCCCCCCC
Confidence            89999999998888999999999999999999999999999999999998876666799999999999999999999999


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                      +||+|+++..+|+|++|+.++++.++++|++++++++|+++.+++|||+++.+..++++|++++|+|++|.+|++++|++
T Consensus       109 vGdrV~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a  188 (353)
T 4dup_A          109 VGDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLA  188 (353)
T ss_dssp             TTCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             CCCEEEEecCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            99999999888999999999999999999999999999999999999999988899999999999988899999999999


Q ss_pred             HHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +.+|++|++++++++++++++++|++.++|+++
T Consensus       189 ~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~  221 (353)
T 4dup_A          189 RAFGAEVYATAGSTGKCEACERLGAKRGINYRS  221 (353)
T ss_dssp             HHTTCEEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred             HHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCc
Confidence            999999999999999999999999999998863

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=8.5e-43  Score=280.18  Aligned_cols=191  Identities=30%  Similarity=0.420  Sum_probs=182.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.|..+++++.+.|+|+++||+|||.++++|++|+..+.|.++....+|.++|||++|+|+++|+++. |+
T Consensus        22 MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~-~~  100 (342)
T 4eye_A           22 MKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-IK  100 (342)
T ss_dssp             EEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTTSS-CC
T ss_pred             eEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCCCC-CC
Confidence            89999999998888999999999999999999999999999999999998765556799999999999999999999 99


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                      +||+|+++..+|+|++|+.++++.++++|++++++++|+++.++.++|+++.+..++++|+++||+|++|.+|++++|++
T Consensus       101 vGDrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a  180 (342)
T 4eye_A          101 PGDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIA  180 (342)
T ss_dssp             TTCEEEEECSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             CCCEEEEecCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            99999999878999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.+|++|++++++++++++++++|++.++|++
T Consensus       181 ~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~  212 (342)
T 4eye_A          181 KGMGAKVIAVVNRTAATEFVKSVGADIVLPLE  212 (342)
T ss_dssp             HHTTCEEEEEESSGGGHHHHHHHTCSEEEESS
T ss_pred             HHcCCEEEEEeCCHHHHHHHHhcCCcEEecCc
Confidence            99999999999999999999999999999875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=4.9e-43  Score=281.35  Aligned_cols=193  Identities=26%  Similarity=0.337  Sum_probs=183.4

Q ss_pred             CEEEEEcCCCCC-CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++.| +.+++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++.+|
T Consensus         5 mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~   84 (340)
T 3gms_A            5 GKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRE   84 (340)
T ss_dssp             EEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSCGG
T ss_pred             cEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCCCC
Confidence            799999999987 6799999999999999999999999999999999999877656789999999999999999999999


Q ss_pred             CCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425           80 KVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM  159 (193)
Q Consensus        80 ~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~  159 (193)
                      ++||+|+++..+|+|++|+.++++.++++|+++++++||+++..++|+|+++.+..++++|++++|+|++|.+|++++|+
T Consensus        85 ~vGdrV~~~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~  164 (340)
T 3gms_A           85 LIGKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQL  164 (340)
T ss_dssp             GTTCEEEECSSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHH
T ss_pred             CCCCEEEecCCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHH
Confidence            99999999888899999999999999999999999999999999999999998889999999999999988999999999


Q ss_pred             HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ++.+|++|++++++++++++++++|+++++|+++
T Consensus       165 a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~  198 (340)
T 3gms_A          165 SQILNFRLIAVTRNNKHTEELLRLGAAYVIDTST  198 (340)
T ss_dssp             HHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTT
T ss_pred             HHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCc
Confidence            9999999999999999999999999999998863

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.4e-42  Score=277.13  Aligned_cols=192  Identities=29%  Similarity=0.400  Sum_probs=181.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.|+.+++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.+|+
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~   80 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTRFK   80 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCceeEEEEEEECCCCCCCC
Confidence            89999999999988999999999999999999999999999999999998765 35789999999999999999999999


Q ss_pred             CCCEEEEEc-cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425           81 VGDQVCALL-GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM  159 (193)
Q Consensus        81 ~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~  159 (193)
                      +||+|.... .+|+|++|+.++++.++++|++++++++++++..++|+|+++.+..++++|++++|+|++|.+|++++|+
T Consensus        81 ~GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~  160 (325)
T 3jyn_A           81 VGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQW  160 (325)
T ss_dssp             TTCEEEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHH
T ss_pred             CCCEEEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            999998875 4799999999999999999999999999999999999999998888999999999999889999999999


Q ss_pred             HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ++.+|++|++++++++++++++++|++.++|+++
T Consensus       161 a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~  194 (325)
T 3jyn_A          161 AKALGAKLIGTVSSPEKAAHAKALGAWETIDYSH  194 (325)
T ss_dssp             HHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC
Confidence            9999999999999999999999999999999863

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=6.6e-42  Score=276.16  Aligned_cols=193  Identities=40%  Similarity=0.699  Sum_probs=180.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCC-CCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNV-SRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~-~~~   79 (193)
                      |||+++++++.++.+++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++ ..|
T Consensus        23 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~  102 (354)
T 2j8z_A           23 MLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHW  102 (354)
T ss_dssp             EEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSCC--CC
T ss_pred             eeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCCcCCCC
Confidence            8999999998887899999999999999999999999999999999988776544578999999999999999999 999


Q ss_pred             CCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHH
Q 029425           80 KVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM  159 (193)
Q Consensus        80 ~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~  159 (193)
                      ++||+|+++..+|+|++|+.++++.++++|+++++++||+++.+++|||+++.+..++++|++++|+|++|++|++++|+
T Consensus       103 ~vGdrV~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~  182 (354)
T 2j8z_A          103 KIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQL  182 (354)
T ss_dssp             CTTCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHH
T ss_pred             CCCCEEEEecCCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHH
Confidence            99999999977899999999999999999999999999999999999999997788999999999999899999999999


Q ss_pred             HHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          160 GKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       160 ~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ++..|++|+++++++++++.++++|++.++|+++
T Consensus       183 a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~  216 (354)
T 2j8z_A          183 TRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKK  216 (354)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCC
Confidence            9999999999999999999999999999998753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=4.1e-42  Score=275.94  Aligned_cols=189  Identities=29%  Similarity=0.403  Sum_probs=176.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++...++|.++|||++|+|+++|+++.+|+
T Consensus         3 MkA~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~   80 (340)
T 3s2e_A            3 MKAAVVRAFGAP--LTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVK   80 (340)
T ss_dssp             EEEEEBCSTTSC--CEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCC
T ss_pred             eEEEEEecCCCC--CEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCC
Confidence            899999988766  899999999999999999999999999999999998776556899999999999999999999999


Q ss_pred             CCCEEEEE----------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCAL----------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|...                            ..+|+|++|+.++++.++++|++++++++|+++.++.|+|+++ 
T Consensus        81 vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-  159 (340)
T 3s2e_A           81 EGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGL-  159 (340)
T ss_dssp             TTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHH-
T ss_pred             CCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHH-
Confidence            99999432                            1369999999999999999999999999999999999999999 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ...++++|+++||+|+ |.+|++++|+++.+|++|++++++++++++++++|+++++|+++
T Consensus       160 ~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~  219 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARD  219 (340)
T ss_dssp             HTTTCCTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCC
Confidence            6779999999999997 99999999999999999999999999999999999999999864

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=9.5e-42  Score=271.85  Aligned_cols=191  Identities=28%  Similarity=0.458  Sum_probs=175.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCC--C--CCCCCCCCCCcceEEEEEEecCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSY--P--PPKGASPYPGLECSGTILSVGKNV   76 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~--~--~~~~~p~~lg~e~~G~V~~vG~~~   76 (193)
                      |||+++++++.++.+++++.+.|+|+++||+|||.++++|++|++.+.|..  +  ....+|.++|||++|+|+++|+++
T Consensus         7 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   86 (321)
T 3tqh_A            7 MKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDV   86 (321)
T ss_dssp             EEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECTTC
T ss_pred             ceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCCCC
Confidence            799999999988889999999999999999999999999999999988831  1  123468999999999999999999


Q ss_pred             CCCCCCCEEEEEc----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchH
Q 029425           77 SRWKVGDQVCALL----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI  152 (193)
Q Consensus        77 ~~~~~G~~V~~~~----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~  152 (193)
                      .+|++||+|+++.    .+|+|++|+.++++.++++|++++++++|+++.+++|||+++ +..++++|++++|+|++|.+
T Consensus        87 ~~~~~GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~v  165 (321)
T 3tqh_A           87 NNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGV  165 (321)
T ss_dssp             CSCCTTCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHH
T ss_pred             CCCCCCCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHH
Confidence            9999999999885    369999999999999999999999999999999999999999 78999999999999988999


Q ss_pred             HHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          153 GTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       153 G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      |++++|+|+.+|++|++++ +++++++++++|+++++|+++
T Consensus       166 G~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~~~i~~~~  205 (321)
T 3tqh_A          166 GHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAEQCINYHE  205 (321)
T ss_dssp             HHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCCEEEeCCC
Confidence            9999999999999999887 566799999999999999864

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.2e-41  Score=272.87  Aligned_cols=193  Identities=32%  Similarity=0.469  Sum_probs=179.9

Q ss_pred             CEEEEEcCCCCCCceEE-EeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQL-QEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~-~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++.+..+++ ++.+.|+|+++||+|||.++++|++|+..+.|.++....+|.++|||++|+|+++|+++..|
T Consensus        30 Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~  109 (351)
T 1yb5_A           30 MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAF  109 (351)
T ss_dssp             EEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTTC
T ss_pred             EEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCCCCC
Confidence            79999999888888998 79999999999999999999999999999988765444578999999999999999999999


Q ss_pred             CCCCEEEEEcc-CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHH
Q 029425           80 KVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQ  158 (193)
Q Consensus        80 ~~G~~V~~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~  158 (193)
                      ++||+|++... +|+|++|+.++++.++++|++++++++|+++.++.|||+++.+..+++++++++|+|++|++|++++|
T Consensus       110 ~vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~  189 (351)
T 1yb5_A          110 KKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQ  189 (351)
T ss_dssp             CTTCEEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHH
Confidence            99999988753 69999999999999999999999999999999999999999778899999999999999999999999


Q ss_pred             HHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          159 MGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       159 ~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +++.+|++|+++++++++++.++++|++.++|+++
T Consensus       190 ~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~  224 (351)
T 1yb5_A          190 IARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHRE  224 (351)
T ss_dssp             HHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTS
T ss_pred             HHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCC
Confidence            99999999999999999999999999999998753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=1.2e-41  Score=275.43  Aligned_cols=190  Identities=24%  Similarity=0.397  Sum_probs=177.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++++ .+..+++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++.+|+
T Consensus        28 mkA~~~~~~-~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~  106 (363)
T 3uog_A           28 MQEWSTETV-APHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFR  106 (363)
T ss_dssp             EEEEEBSCT-TTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             hEEEEEccC-CCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCCCCC
Confidence            899999988 4567999999999999999999999999999999999988765566899999999999999999999999


Q ss_pred             CCCEEEEEc------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcC
Q 029425           81 VGDQVCALL------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSH  136 (193)
Q Consensus        81 ~G~~V~~~~------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~  136 (193)
                      +||+|++.+                        .+|+|++|+.++++.++++|+++++++||+++.++.+||+++.+..+
T Consensus       107 vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~  186 (363)
T 3uog_A          107 PGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGH  186 (363)
T ss_dssp             TTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTC
T ss_pred             CCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcC
Confidence            999999861                        25999999999999999999999999999999999999999988899


Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +++|++|+|+| +|.+|++++|+|+.+|++|++++++++++++++++|++.++|++
T Consensus       187 ~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~  241 (363)
T 3uog_A          187 LRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRL  241 (363)
T ss_dssp             CCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETT
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCC
Confidence            99999999999 69999999999999999999999999999999999999999854

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.4e-41  Score=273.50  Aligned_cols=190  Identities=26%  Similarity=0.386  Sum_probs=177.8

Q ss_pred             CEEEEEcCCC---CCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQPG---SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~~---~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |||++++++|   .+..+++++.+.|+|+++||+|||.++++|++|++.+.+..   ..+|.++|||++|+|+++|+++.
T Consensus         3 MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~---~~~p~i~G~e~~G~V~~vG~~v~   79 (346)
T 3fbg_A            3 LKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDV---SKAPRVLGFDAIGVVESVGNEVT   79 (346)
T ss_dssp             EEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCC---SSSCBCCCCCEEEEEEEECTTCC
T ss_pred             cEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCC---CCCCcCcCCccEEEEEEeCCCCC
Confidence            8999999987   67789999999999999999999999999999999888762   34689999999999999999999


Q ss_pred             CCCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCC------CCCeEEEEcC
Q 029425           78 RWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLS------PGESFLVHGG  148 (193)
Q Consensus        78 ~~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~------~~~~vli~ga  148 (193)
                      +|++||+|++..   .+|+|++|+.++++.++++|++++++++++++.+++|||+++.+..+++      +|++|+|+|+
T Consensus        80 ~~~~GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg  159 (346)
T 3fbg_A           80 MFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIING  159 (346)
T ss_dssp             SCCTTCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEEST
T ss_pred             cCCCCCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcC
Confidence            999999999863   3699999999999999999999999999999999999999998888988      9999999988


Q ss_pred             CchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          149 SSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       149 ~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +|.+|++++|+++.+|++|++++++++++++++++|+++++|+++
T Consensus       160 ~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~  204 (346)
T 3fbg_A          160 AGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKE  204 (346)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTS
T ss_pred             CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCc
Confidence            899999999999999999999999999999999999999999863

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=9.9e-42  Score=271.06  Aligned_cols=184  Identities=21%  Similarity=0.300  Sum_probs=172.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++  .+..+++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         5 Mka~~~~~--~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   81 (315)
T 3goh_A            5 HQVWAYQT--KTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPIN-WSNGHVPGVDGAGVIVKVGAKVDSKM   81 (315)
T ss_dssp             EEEEEEET--TTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTC-CCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred             eEEEEEeC--CCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCc-CCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence            89999996  3556999999999999999999999999999999999887654 35799999999999999999999999


Q ss_pred             CCCEEEEEcc---CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHH
Q 029425           81 VGDQVCALLG---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAI  157 (193)
Q Consensus        81 ~G~~V~~~~~---~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i  157 (193)
                      +||+|++...   +|+|++|+.++++.++++|++++++++|+++.+++|||+++ +..++++|++|||+|+ |.+|++++
T Consensus        82 vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~  159 (315)
T 3goh_A           82 LGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGF-GAVNNLLT  159 (315)
T ss_dssp             TTCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECC-SHHHHHHH
T ss_pred             CCCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECC-CHHHHHHH
Confidence            9999999863   79999999999999999999999999999999999999999 8899999999999999 99999999


Q ss_pred             HHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          158 QMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       158 ~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      |+|+.+|++|++++ +++++++++++|+++++|
T Consensus       160 qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~  191 (315)
T 3goh_A          160 QMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYR  191 (315)
T ss_dssp             HHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEES
T ss_pred             HHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEc
Confidence            99999999999999 999999999999998884

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=2.5e-41  Score=270.72  Aligned_cols=190  Identities=27%  Similarity=0.408  Sum_probs=179.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.++.+++++.+.|+|+++||+|||.++++|++|++.+.|.++.  .+|.++|||++|+|+++|+++++|+
T Consensus         9 mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~P~i~G~e~~G~V~~vG~~v~~~~   86 (334)
T 3qwb_A            9 QKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGKGVTNFE   86 (334)
T ss_dssp             EEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC--CSSEECCSEEEEEEEEECTTCCSCC
T ss_pred             eEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCccccceEEEEEEECCCCCCCC
Confidence            89999999998888999999999999999999999999999999999987763  3689999999999999999999999


Q ss_pred             CCCEEEEEccCceeeeEEeec-CCceEECCCCCCHHh---HccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVP-AGQVLPVPSGVSLKD---AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFA  156 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~-~~~~~~~p~~~~~~~---aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~  156 (193)
                      +||+|+++. +|+|++|+.++ ++.++++|+++++++   +++++..++++|+++.+..++++|++++|+|++|.+|+++
T Consensus        87 ~GdrV~~~~-~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~  165 (334)
T 3qwb_A           87 VGDQVAYIS-NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLIL  165 (334)
T ss_dssp             TTCEEEEEC-SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHH
T ss_pred             CCCEEEEee-CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHH
Confidence            999999885 79999999999 999999999999999   8888899999999998888999999999999889999999


Q ss_pred             HHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          157 IQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       157 i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +|+++.+|++|++++++++++++++++|++.++|+++
T Consensus       166 ~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~  202 (334)
T 3qwb_A          166 NQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASK  202 (334)
T ss_dssp             HHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCC
Confidence            9999999999999999999999999999999999863

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=6.5e-42  Score=272.99  Aligned_cols=191  Identities=21%  Similarity=0.340  Sum_probs=175.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.|+.+++++.+.|+|+++||+|||.++++|++|++.+.|.++...++|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            9999999999888899999999999999999999999999999999999877656789999999999999998  57899


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH--hcCCCCCC-eEEEEcCCch
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM--TSHLSPGE-SFLVHGGSSG  151 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~--~~~~~~~~-~vli~ga~g~  151 (193)
                      +||+|++..      .+|+|++|+.++++.++++|++++++++|+++..++|||++++.  ..++++++ +++|+|++|.
T Consensus        79 vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~  158 (324)
T 3nx4_A           79 AGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGG  158 (324)
T ss_dssp             TTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSH
T ss_pred             CCCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcH
Confidence            999999763      57999999999999999999999999999999999999998863  35566633 4999999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +|++++|+|+.+|++|++++++++++++++++|+++++|+++
T Consensus       159 vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~  200 (324)
T 3nx4_A          159 VGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDE  200 (324)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGG
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCC
Confidence            999999999999999999999999999999999999999853

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-41  Score=272.09  Aligned_cols=192  Identities=32%  Similarity=0.501  Sum_probs=177.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.++.+++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            99999999987777999999999999999999999999999999999887654345789999999999999999999999


Q ss_pred             CCCEEE-------E--------------------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVC-------A--------------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~-------~--------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|+       +                    +..+|+|++|+.++++.++++|++++++++++++.++.|||+++..
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~  160 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVD  160 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHH
Confidence            999998       3                    2236999999999999999999999999999999999999999966


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ..++++++++||+|++|.+|++++|+++.+|++|+++++++++++.++++|++.++|++
T Consensus       161 ~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~  219 (343)
T 2eih_A          161 KLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYT  219 (343)
T ss_dssp             TSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETT
T ss_pred             hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCC
Confidence            67899999999999999999999999999999999999999999999999999999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-41  Score=270.19  Aligned_cols=188  Identities=31%  Similarity=0.485  Sum_probs=177.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.++.+++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++.+|+
T Consensus         4 mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~   83 (349)
T 4a27_A            4 MRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYE   83 (349)
T ss_dssp             EEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCSCC
T ss_pred             eEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCCCC
Confidence            89999999998888999999999999999999999999999999999998776667899999999999999999999999


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                      +||+|+++..+|+|++|+.++++.++++|++++++++|+++.+++|||+++.+..++++|++|+|+|++|.+|++++|+|
T Consensus        84 ~GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla  163 (349)
T 4a27_A           84 IGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLC  163 (349)
T ss_dssp             TTCEEEEECSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             CCCEEEEecCCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            99999999888999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HHCC-CEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          161 KCQG-VRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       161 ~~~g-~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +.+| ++|+.+. ++++.+.++ +|+++++|
T Consensus       164 ~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~  192 (349)
T 4a27_A          164 STVPNVTVFGTA-STFKHEAIK-DSVTHLFD  192 (349)
T ss_dssp             TTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE
T ss_pred             HHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc
Confidence            9986 5888877 778888888 99999997

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=4.1e-41  Score=272.39  Aligned_cols=192  Identities=24%  Similarity=0.353  Sum_probs=177.4

Q ss_pred             CEEEEEcCC---CCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQP---GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~---~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |||++++++   +.|..+++++.+.|+|+++||+|||.++++|++|+..+.|.++. ..+|.++|||++|+|+++|+++.
T Consensus        23 MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~  101 (363)
T 4dvj_A           23 MKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD-GTDWKVIGYDAAGIVSAVGPDVT  101 (363)
T ss_dssp             EEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC---CCSBCCCCCEEEEEEEECTTCC
T ss_pred             eEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC-CCCCCcccceeEEEEEEeCCCCC
Confidence            899999988   56788999999999999999999999999999999999887654 35789999999999999999999


Q ss_pred             CCCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCC-----CCCeEEEEcCC
Q 029425           78 RWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLS-----PGESFLVHGGS  149 (193)
Q Consensus        78 ~~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~-----~~~~vli~ga~  149 (193)
                      +|++||+|+++.   .+|+|++|+.++++.++++|++++++++|+++.+++|||+++.+..+++     +|++|||+|++
T Consensus       102 ~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~  181 (363)
T 4dvj_A          102 LFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGA  181 (363)
T ss_dssp             SCCTTCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTT
T ss_pred             CCCCCCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCC
Confidence            999999999863   3699999999999999999999999999999999999999998888888     89999999988


Q ss_pred             chHHHHHHHHHHH-CCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          150 SGIGTFAIQMGKC-QGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       150 g~~G~~~i~~~~~-~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      |.+|++++|+|+. .|++|++++++++++++++++|+++++|+++
T Consensus       182 G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~  226 (363)
T 4dvj_A          182 GGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSK  226 (363)
T ss_dssp             SHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTS
T ss_pred             CHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC
Confidence            9999999999998 5899999999999999999999999999863

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.6e-41  Score=266.86  Aligned_cols=191  Identities=28%  Similarity=0.395  Sum_probs=177.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++.+..+++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIK   80 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCCCceeEEEEEEECCCCCCCC
Confidence            99999999988888999999999999999999999999999999999887642 34689999999999999999999999


Q ss_pred             CCCEEEEEc--cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHH
Q 029425           81 VGDQVCALL--GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQ  158 (193)
Q Consensus        81 ~G~~V~~~~--~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~  158 (193)
                      +||+| +++  .+|+|++|+.++++.++++|++++++++|+++.++.|||+++.+..+++++++++|+|++|.+|++++|
T Consensus        81 ~GdrV-~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~  159 (327)
T 1qor_A           81 AGDRV-VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQ  159 (327)
T ss_dssp             TTCEE-EESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHH
T ss_pred             CCCEE-EECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHH
Confidence            99999 554  459999999999999999999999999999999999999999778899999999999999999999999


Q ss_pred             HHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          159 MGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       159 ~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +++..|++|+++++++++++.++++|++.++|+++
T Consensus       160 ~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~  194 (327)
T 1qor_A          160 WAKALGAKLIGTVGTAQKAQSALKAGAWQVINYRE  194 (327)
T ss_dssp             HHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCC
Confidence            99999999999999999999999999999998753

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=5.6e-41  Score=271.00  Aligned_cols=192  Identities=24%  Similarity=0.369  Sum_probs=174.4

Q ss_pred             CEEEEEcCCCCC-CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++.+++.| +.+++++.+.|+|+++||+|||.++++|++|+..+.|.++....+|.++|||++|+|+++|+++..|
T Consensus        27 mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~  106 (357)
T 1zsy_A           27 VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGL  106 (357)
T ss_dssp             EEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECTTCCSC
T ss_pred             hEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCCCCCCC
Confidence            799999998875 3488899999999999999999999999999999998766544578999999999999999999999


Q ss_pred             CCCCEEEEEc-cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHH
Q 029425           80 KVGDQVCALL-GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQ  158 (193)
Q Consensus        80 ~~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~  158 (193)
                      ++||+|++.. .+|+|++|+.++++.++++|+++++++||+++.+++|||+++.+..++++|++|||+|++|.+|++++|
T Consensus       107 ~vGdrV~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiq  186 (357)
T 1zsy_A          107 KPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQ  186 (357)
T ss_dssp             CTTCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHH
T ss_pred             CCCCEEEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHH
Confidence            9999999875 369999999999999999999999999999998999999999888899999999999999999999999


Q ss_pred             HHHHCCCEEEEEeCCcc----hHHHHhhcCCcEEecCC
Q 029425          159 MGKCQGVRVFVTAGLAT----RFILCQPFNIRVFIGFG  192 (193)
Q Consensus       159 ~~~~~g~~v~~~~~~~~----~~~~~~~~G~~~~~~~~  192 (193)
                      +|+.+|+++++++++++    +.++++++|+++++|++
T Consensus       187 lak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~  224 (357)
T 1zsy_A          187 IAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEE  224 (357)
T ss_dssp             HHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHH
T ss_pred             HHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecC
Confidence            99999999988886643    46788999999999863

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.5e-41  Score=270.82  Aligned_cols=190  Identities=20%  Similarity=0.293  Sum_probs=172.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCC-CCCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQ-IKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~-~~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |||+++++++.+  +++++.+.|+ |+++||+|||.++++|++|++.+.|.++.  ...+|.++|||++|+|+++|+++.
T Consensus        16 mka~~~~~~g~~--l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   93 (359)
T 1h2b_A           16 LKAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVE   93 (359)
T ss_dssp             -CEEEESSTTSC--CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             ceEEEEecCCCC--cEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCCC
Confidence            899999988744  8889999999 99999999999999999999999886541  224689999999999999999999


Q ss_pred             CCCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHc---cCcchHHHH
Q 029425           78 RWKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAA---AFPEVACTV  127 (193)
Q Consensus        78 ~~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa---~~~~~~~~a  127 (193)
                      +|++||+|+++.                           .+|+|++|+.++++.++++|+++++++|+   +++.++.||
T Consensus        94 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta  173 (359)
T 1h2b_A           94 GLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITA  173 (359)
T ss_dssp             SCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHH
T ss_pred             CCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHHHH
Confidence            999999998753                           36999999999999999999999999998   788889999


Q ss_pred             HHHHHHh-cCCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          128 WSTVFMT-SHLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       128 ~~~l~~~-~~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      |+++.+. .++++|++|||+|+ |.+|++++|+|+.+ |++|++++++++++++++++|+++++|+++
T Consensus       174 ~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~  240 (359)
T 1h2b_A          174 YRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARR  240 (359)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTS
T ss_pred             HHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccc
Confidence            9999665 89999999999999 99999999999999 999999999999999999999999999863

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=8.2e-41  Score=271.92  Aligned_cols=188  Identities=22%  Similarity=0.287  Sum_probs=175.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.+|+
T Consensus         9 mkA~v~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   85 (378)
T 3uko_A            9 CKAAVAYEPNKP--LVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   85 (378)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             eEEEEEecCCCc--cEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCC-CCCCccCCccceEEEEEeCCCCCcCC
Confidence            899999998876  889999999999999999999999999999999988653 45799999999999999999999999


Q ss_pred             CCCEEEEEcc-------------------------------------------------CceeeeEEeecCCceEECCCC
Q 029425           81 VGDQVCALLG-------------------------------------------------GGGYAEKVAVPAGQVLPVPSG  111 (193)
Q Consensus        81 ~G~~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~~p~~  111 (193)
                      +||+|++.+.                                                 .|+|++|+.++++.++++|++
T Consensus        86 vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  165 (378)
T 3uko_A           86 AGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPT  165 (378)
T ss_dssp             TTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEECCCC
Confidence            9999986532                                                 158999999999999999999


Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +++++++.++.++.|||+++.+..++++|++|+|+|+ |.+|++++|+|+.+|+ +|++++++++|+++++++|+++++|
T Consensus       166 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~  244 (378)
T 3uko_A          166 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVN  244 (378)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEEC
T ss_pred             CCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEc
Confidence            9999999999999999999988899999999999998 9999999999999999 8999999999999999999999999


Q ss_pred             CC
Q 029425          191 FG  192 (193)
Q Consensus       191 ~~  192 (193)
                      ++
T Consensus       245 ~~  246 (378)
T 3uko_A          245 PK  246 (378)
T ss_dssp             GG
T ss_pred             cc
Confidence            85

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.5e-40  Score=267.24  Aligned_cols=186  Identities=28%  Similarity=0.504  Sum_probs=173.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCC-CCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPP-KGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~-~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++.+++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|..+.. ..+|.++|||++|+|+++|+++.+|
T Consensus         8 mka~~~~~~~~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~   85 (343)
T 3gaz_A            8 MIAAVVEEANGP--FVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDSF   85 (343)
T ss_dssp             EEEEEECSTTCC--EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             heEEEEecCCCc--eEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCCC
Confidence            899999998877  9999999999999999999999999999999998865322 4578999999999999999999999


Q ss_pred             CCCCEEEEEc-----cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHH
Q 029425           80 KVGDQVCALL-----GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGT  154 (193)
Q Consensus        80 ~~G~~V~~~~-----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~  154 (193)
                      ++||+|+++.     .+|+|++|+.++++.++++|++++++++++++.+++|||+++.+..++++|++|||+|++|.+|+
T Consensus        86 ~vGdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~  165 (343)
T 3gaz_A           86 RVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGH  165 (343)
T ss_dssp             CTTCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHH
Confidence            9999999985     36999999999999999999999999999999999999999988899999999999998899999


Q ss_pred             HHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          155 FAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       155 ~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +++|+++.+|++|+++ .+++++++++++|++. +|
T Consensus       166 ~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~-i~  199 (343)
T 3gaz_A          166 VAIQIALARGARVFAT-ARGSDLEYVRDLGATP-ID  199 (343)
T ss_dssp             HHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEE-EE
T ss_pred             HHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCE-ec
Confidence            9999999999999999 8999999999999988 65

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=4.8e-41  Score=269.01  Aligned_cols=192  Identities=24%  Similarity=0.383  Sum_probs=174.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCC-CCC-CCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSY-PPP-KGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~-~~~-~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||+++++++.+..+++++.+.|+|+++||+|||.++++|++|++.+.|.+ +.. ..+|.++|||++|+|+++|+++.+
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999999888889999999999999999999999999999999998865 211 346899999999999999999999


Q ss_pred             CCCCCEEEEEcc-CceeeeEEeecCCceEECCCCCCHHh--HccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHH
Q 029425           79 WKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKD--AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTF  155 (193)
Q Consensus        79 ~~~G~~V~~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~--aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~  155 (193)
                      |++||+|..... +|+|++|+.++++.++++|+++++++  +|+++.++.|||+++.+..+++++++++|+|++|.+|++
T Consensus        82 ~~~GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~  161 (333)
T 1wly_A           82 FTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHI  161 (333)
T ss_dssp             CCTTCEEEECSSSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHH
T ss_pred             CCCCCEEEEecCCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHH
Confidence            999999987654 79999999999999999999999999  889999999999999778899999999999999999999


Q ss_pred             HHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          156 AIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       156 ~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++|+++.+|++|+++++++++++.++++|++.++|++
T Consensus       162 ~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~  198 (333)
T 1wly_A          162 MVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYS  198 (333)
T ss_dssp             HHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETT
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECC
Confidence            9999999999999999999999999999999999875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=2.5e-40  Score=268.77  Aligned_cols=192  Identities=30%  Similarity=0.394  Sum_probs=174.6

Q ss_pred             CEEEEEcCCCCCCceEE-EeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCC--------------CCCCCCCCCCcc
Q 029425            1 MKAIVITQPGSPEVLQL-QEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYP--------------PPKGASPYPGLE   64 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~-~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~--------------~~~~~p~~lg~e   64 (193)
                      |||+++++++.+..+++ ++.+.|.| +++||+|||.++++|++|++.+.|..+              ...++|.++|||
T Consensus        22 mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v~G~E  101 (375)
T 2vn8_A           22 SMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRD  101 (375)
T ss_dssp             EEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBCCCCE
T ss_pred             ceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCccccee
Confidence            79999999988777888 89998885 999999999999999999999887532              112368999999


Q ss_pred             eEEEEEEecCCCCCCCCCCEEEEEcc---CceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcC----C
Q 029425           65 CSGTILSVGKNVSRWKVGDQVCALLG---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSH----L  137 (193)
Q Consensus        65 ~~G~V~~vG~~~~~~~~G~~V~~~~~---~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----~  137 (193)
                      ++|+|+++|+++++|++||+|++...   +|+|+||+.++++.++++|+++++++||+++.+++|||+++.+.++    +
T Consensus       102 ~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~  181 (375)
T 2vn8_A          102 VSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKN  181 (375)
T ss_dssp             EEEEEEEECTTCCSCCTTCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTT
T ss_pred             eeEEEEEeCCCCCCCCCCCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhccccccc
Confidence            99999999999999999999998753   6999999999999999999999999999999899999999977788    8


Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ++|++++|+|++|.+|++++|+++.+|++|++++ ++++.++++++|++.++|+++
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~  236 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKS  236 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCc
Confidence            9999999999889999999999999999999988 678999999999999999863

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2.7e-40  Score=265.84  Aligned_cols=189  Identities=25%  Similarity=0.342  Sum_probs=173.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC-CCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP-PKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~-~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++++  +++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..++|.++|||++|+|+++|+++++|
T Consensus         1 MkA~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   78 (345)
T 3jv7_A            1 MKAVQYTEIGSE--PVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGF   78 (345)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSC
T ss_pred             CeEEEEcCCCCc--eEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCC
Confidence            999999999876  889999999999999999999999999999999887652 24578999999999999999999999


Q ss_pred             CCCCEEEEEc--------------------------------cCceeeeEEeec-CCceEECCCCCCHHhHccCcchHHH
Q 029425           80 KVGDQVCALL--------------------------------GGGGYAEKVAVP-AGQVLPVPSGVSLKDAAAFPEVACT  126 (193)
Q Consensus        80 ~~G~~V~~~~--------------------------------~~g~~~~~~~~~-~~~~~~~p~~~~~~~aa~~~~~~~~  126 (193)
                      ++||+|++.+                                .+|+|++|+.++ ++.++++|+ ++++++|+++.+++|
T Consensus        79 ~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~t  157 (345)
T 3jv7_A           79 GVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLT  157 (345)
T ss_dssp             CTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHH
T ss_pred             CCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHH
Confidence            9999998742                                369999999999 899999999 999999999999999


Q ss_pred             HHHHHHH-hcCCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          127 VWSTVFM-TSHLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       127 a~~~l~~-~~~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ||+++.+ ...+++|++++|+|+ |.+|++++|+|+.+ +++|++++++++|+++++++|++.++|+++
T Consensus       158 a~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~  225 (345)
T 3jv7_A          158 PYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA  225 (345)
T ss_dssp             HHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECST
T ss_pred             HHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCC
Confidence            9999976 458999999999998 99999999999998 679999999999999999999999998863

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=4.1e-40  Score=264.27  Aligned_cols=188  Identities=30%  Similarity=0.439  Sum_probs=173.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++..|+
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~   78 (339)
T 1rjw_A            1 MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLK   78 (339)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEcCCCCC--cEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCC
Confidence            999999988744  888999999999999999999999999999999887654445789999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|+..+                            .+|+|++|+.++++.++++|++++++++|+++.++.|||+++.
T Consensus        79 vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~  158 (339)
T 1rjw_A           79 VGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALK  158 (339)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHH
Confidence            999998631                            3589999999999999999999999999999999999999995


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      .. ++++|++++|+|+ |.+|++++|+++.+|++|++++++++++++++++|++.++|++
T Consensus       159 ~~-~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~  216 (339)
T 1rjw_A          159 VT-GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPL  216 (339)
T ss_dssp             HH-TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred             hc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCC
Confidence            54 8999999999999 8899999999999999999999999999999999999999876

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=2.5e-40  Score=268.57  Aligned_cols=186  Identities=25%  Similarity=0.291  Sum_probs=171.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++  ..+|.++|||++|+|+++|+++..|+
T Consensus        10 mka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~v~~~~   85 (373)
T 1p0f_A           10 CKAAVAWEPHKP--LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIGAGVTCVK   85 (373)
T ss_dssp             EEEEEBSSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             eEEEEEEcCCCC--eeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC--CCCCcccCcCceEEEEEECCCCCccC
Confidence            899999988754  88899999999999999999999999999999988765  34689999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|++.+                                                .+|+|+||+.++++.++++|+++
T Consensus        86 vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  165 (373)
T 1p0f_A           86 PGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKA  165 (373)
T ss_dssp             TTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTC
T ss_pred             CCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEEECCCCC
Confidence            999998752                                                13899999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +++ +|+++.++.|||+++.+..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|+++++|+
T Consensus       166 ~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~  243 (373)
T 1p0f_A          166 PLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNP  243 (373)
T ss_dssp             CGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECG
T ss_pred             Chh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEec
Confidence            999 99998999999999978889999999999996 9999999999999999 89999999999999999999999987


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus       244 ~  244 (373)
T 1p0f_A          244 K  244 (373)
T ss_dssp             G
T ss_pred             c
Confidence            5

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=4.1e-40  Score=267.42  Aligned_cols=187  Identities=23%  Similarity=0.305  Sum_probs=172.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++..  +|.++|||++|+|+++|+++.+|+
T Consensus         9 mkA~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~P~v~GhE~~G~V~~vG~~v~~~~   84 (374)
T 2jhf_A            9 CKAAVLWEEKKP--FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP--LPVIAGHEAAGIVESIGEGVTTVR   84 (374)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC--SSBCCCCSEEEEEEEECTTCCSCC
T ss_pred             EEEEEEecCCCc--eEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCC--CCcccCcCceEEEEEECCCCCCCC
Confidence            899999988755  8888999999999999999999999999999998876532  689999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|++.+                                                .+|+|++|+.++++.++++|+++
T Consensus        85 vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  164 (374)
T 2jhf_A           85 PGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAS  164 (374)
T ss_dssp             TTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTC
T ss_pred             CCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECCCCC
Confidence            999998752                                                13899999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++|++++.++.|||+++.+..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|+++++|+
T Consensus       165 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~  243 (374)
T 2jhf_A          165 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP  243 (374)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECG
T ss_pred             CHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecc
Confidence            999999999999999999978889999999999996 9999999999999999 89999999999999999999999987


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus       244 ~  244 (374)
T 2jhf_A          244 Q  244 (374)
T ss_dssp             G
T ss_pred             c
Confidence            5

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.1e-40  Score=267.43  Aligned_cols=187  Identities=22%  Similarity=0.306  Sum_probs=172.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhh-hhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTL-QRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~-~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|++ .+.|.++  ..+|.++|||++|+|+++|+++..|
T Consensus         9 mka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~V~~~   84 (374)
T 1cdo_A            9 CKAAVAWEANKP--LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESVGPGVTEF   84 (374)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEECTTCCSC
T ss_pred             eEEEEEecCCCC--eEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC--CCCCcccCccceEEEEEECCCCccC
Confidence            899999988755  8889999999999999999999999999999 8888765  3468999999999999999999999


Q ss_pred             CCCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425           80 KVGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG  111 (193)
Q Consensus        80 ~~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~  111 (193)
                      ++||+|++.+                                                .+|+|++|+.++++.++++|++
T Consensus        85 ~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~  164 (374)
T 1cdo_A           85 QPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPS  164 (374)
T ss_dssp             CTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTT
T ss_pred             CCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEECCCC
Confidence            9999998752                                                1389999999999999999999


Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      ++++++|+++.++.|||+++.+..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|+++++|
T Consensus       165 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~  243 (374)
T 1cdo_A          165 APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVN  243 (374)
T ss_dssp             CCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEEC
T ss_pred             CCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEe
Confidence            9999999999999999999878889999999999996 9999999999999999 8999999999999999999999998


Q ss_pred             CC
Q 029425          191 FG  192 (193)
Q Consensus       191 ~~  192 (193)
                      ++
T Consensus       244 ~~  245 (374)
T 1cdo_A          244 PN  245 (374)
T ss_dssp             GG
T ss_pred             cc
Confidence            75

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=1.1e-39  Score=264.82  Aligned_cols=185  Identities=24%  Similarity=0.339  Sum_probs=166.4

Q ss_pred             CEEEEEcCCCCCCceEEE-eecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~-~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++.   ++++ +.+.|+|+++||+|||.++++|++|++.+.+..    .+|.++|||++|+|+++|+++..|
T Consensus        12 mkA~v~~~~~~---l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~----~~p~v~G~e~~G~V~~vG~~v~~~   84 (371)
T 3gqv_A           12 QTALTVNDHDE---VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFA----TPWAFLGTDYAGTVVAVGSDVTHI   84 (371)
T ss_dssp             EEEEEECTTSC---EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC-----C----CTTSCCCSEEEEEEEEECTTCCSC
T ss_pred             ceeEEEcCCCc---eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcCC----CCCccCccccEEEEEEeCCCCCCC
Confidence            89999998754   8998 999999999999999999999999998886632    258999999999999999999999


Q ss_pred             CCCCEEEEEc--------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHh-cCC-----------CC
Q 029425           80 KVGDQVCALL--------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMT-SHL-----------SP  139 (193)
Q Consensus        80 ~~G~~V~~~~--------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~-~~~-----------~~  139 (193)
                      ++||+|++.+        .+|+|++|+.++.+.++++|+++++++|++++.++.|||+++... .++           ++
T Consensus        85 ~~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~  164 (371)
T 3gqv_A           85 QVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSK  164 (371)
T ss_dssp             CTTCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSS
T ss_pred             CCCCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCC
Confidence            9999999986        369999999999999999999999999999999999999999777 553           89


Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      |++|+|+|++|.+|++++|+|+.+|++|++++ +++|+++++++|+++++|+++
T Consensus       165 g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~  217 (371)
T 3gqv_A          165 PVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRA  217 (371)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCC
Confidence            99999999999999999999999999999887 899999999999999999863

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=4.8e-40  Score=267.18  Aligned_cols=187  Identities=24%  Similarity=0.289  Sum_probs=171.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|. + ...+|.++|||++|+|+++|+++..|+
T Consensus         9 mka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~-~~~~P~v~GhE~~G~V~~vG~~v~~~~   84 (376)
T 1e3i_A            9 CKAAIAWKTGSP--LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-K-KALFPVVLGHECAGIVESVGPGVTNFK   84 (376)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-S-CCCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             eeEEEEecCCCC--eEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-C-CCCCCcccCccccEEEEEECCCCccCC
Confidence            899999988754  888899999999999999999999999999988875 2 234689999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------------------------------cCceeeeEEeecCCceEEC
Q 029425           81 VGDQVCALL----------------------------------------------------GGGGYAEKVAVPAGQVLPV  108 (193)
Q Consensus        81 ~G~~V~~~~----------------------------------------------------~~g~~~~~~~~~~~~~~~~  108 (193)
                      +||+|++.+                                                    .+|+|+||+.++++.++++
T Consensus        85 vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  164 (376)
T 1e3i_A           85 PGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARV  164 (376)
T ss_dssp             TTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccccEEEC
Confidence            999998742                                                    1389999999999999999


Q ss_pred             CCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcE
Q 029425          109 PSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       109 p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      |++++++++++++.++.|||+++.+..++++|++|+|+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|+++
T Consensus       165 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  243 (376)
T 1e3i_A          165 DDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD  243 (376)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcE
Confidence            9999999999999999999999878889999999999996 9999999999999999 8999999999999999999999


Q ss_pred             EecCC
Q 029425          188 FIGFG  192 (193)
Q Consensus       188 ~~~~~  192 (193)
                      ++|++
T Consensus       244 vi~~~  248 (376)
T 1e3i_A          244 CLNPR  248 (376)
T ss_dssp             EECGG
T ss_pred             EEccc
Confidence            99875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=4.2e-40  Score=267.22  Aligned_cols=188  Identities=27%  Similarity=0.318  Sum_probs=173.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++.++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus         7 mkA~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~   83 (373)
T 2fzw_A            7 CKAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKLK   83 (373)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             eEEEEEecCCCC--cEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCC-CCCCccccccccEEEEEECCCCCCCC
Confidence            899999988754  888899999999999999999999999999999887653 34689999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|++.+                                                .+|+|++|+.++++.++++|+++
T Consensus        84 vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  163 (373)
T 2fzw_A           84 AGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLA  163 (373)
T ss_dssp             TTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTS
T ss_pred             CCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECCCCC
Confidence            999998752                                                13899999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +++++|+++.++.|||+++.+..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|+++++|+
T Consensus       164 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~  242 (373)
T 2fzw_A          164 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP  242 (373)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             CHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecc
Confidence            999999999999999999878889999999999996 9999999999999999 89999999999999999999999987


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus       243 ~  243 (373)
T 2fzw_A          243 Q  243 (373)
T ss_dssp             G
T ss_pred             c
Confidence            5

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=7.2e-40  Score=263.45  Aligned_cols=188  Identities=28%  Similarity=0.387  Sum_probs=170.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++..+ +..++++|.+.|+|+++||||||.++++|++|++.+.|.++.  ++|.++|||++|+|+++|++++.|+
T Consensus         1 MKA~v~~~~~-~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~--~~p~i~GhE~aG~V~~vG~~V~~~~   77 (348)
T 4eez_A            1 MKAAVVRHNP-DGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN--KAGTVLGHEGIGIVKEIGADVSSLQ   77 (348)
T ss_dssp             CEEEEECSSC-CSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC--CTTCBCCSEEEEEEEEECTTCCSCC
T ss_pred             CeEEEEEcCC-CCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC--CCCcccceeEEEEEEEECceeeecc
Confidence            9999997543 345899999999999999999999999999999999998764  4799999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|...+                            .+|+|++|+.++++.++++|++++++++++++.+++|+|+++ 
T Consensus        78 ~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-  156 (348)
T 4eez_A           78 VGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAI-  156 (348)
T ss_dssp             TTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHH-
T ss_pred             cCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeee-
Confidence            999997532                            258999999999999999999999999999999999999998 


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +..++++|++++|+|+ |.+|.+++|+++.+ |++|++++++++|+++++++|+++++||++
T Consensus       157 ~~~~~~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~  217 (348)
T 4eez_A          157 KVSGVKPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD  217 (348)
T ss_dssp             HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C
T ss_pred             cccCCCCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC
Confidence            5678899999999997 99999999999875 679999999999999999999999999864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=7.4e-40  Score=263.60  Aligned_cols=184  Identities=22%  Similarity=0.301  Sum_probs=169.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.+++++  +++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.+|+
T Consensus         5 mka~~~~~~~~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~V~~vG~~v~~~~   81 (348)
T 3two_A            5 SKGFAIFSKDEH--FKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIKEVGKGVKKFK   81 (348)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSC-CCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             EEEEEEccCCCC--CeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCCC
Confidence            789999987654  899999999999999999999999999999999988654 35799999999999999999999999


Q ss_pred             CCCEEEEEcc-------------------------------------CceeeeEEeecCCceEECCCCCCHHhHccCcch
Q 029425           81 VGDQVCALLG-------------------------------------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEV  123 (193)
Q Consensus        81 ~G~~V~~~~~-------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~  123 (193)
                      +||+|+..+.                                     +|+|++|+.++++.++++|+++++++||+++.+
T Consensus        82 vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~  161 (348)
T 3two_A           82 IGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCA  161 (348)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTH
T ss_pred             CCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhhhhhh
Confidence            9999976321                                     299999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          124 ACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       124 ~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      +.|||+++. ..++++|++|||+|+ |.+|++++|+|+.+|++|++++++++++++++++|+++++
T Consensus       162 ~~ta~~~l~-~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~  225 (348)
T 3two_A          162 GITTYSPLK-FSKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFY  225 (348)
T ss_dssp             HHHHHHHHH-HTTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEE
T ss_pred             HHHHHHHHH-hcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeec
Confidence            999999995 569999999999997 9999999999999999999999999999999999999887

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.9e-40  Score=265.82  Aligned_cols=187  Identities=24%  Similarity=0.310  Sum_probs=172.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++  ..+|.++|||++|+|+++|+++..|+
T Consensus         7 mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            7 IIAAVTPCKGAD--FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP--VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             EEEEEBCSTTCC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             ceEEEEcCCCCC--eEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC--CCCCcccCcccceEEEEeCCCCCCCC
Confidence            899999988755  88899999999999999999999999999999998764  34689999999999999999999999


Q ss_pred             CCCEEEEEc-------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425           81 VGDQVCALL-------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG  111 (193)
Q Consensus        81 ~G~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~  111 (193)
                      +||+|+..+                                                 .+|+|+||+.++++.++++|++
T Consensus        83 ~GdrV~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~~  162 (371)
T 1f8f_A           83 VGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKD  162 (371)
T ss_dssp             TTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEecCCCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCCC
Confidence            999998631                                                 2489999999999999999999


Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      ++++++++++.++.|||+++.+..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|+++++|
T Consensus       163 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~  241 (371)
T 1f8f_A          163 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVIN  241 (371)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEec
Confidence            9999999999999999999977889999999999996 9999999999999999 6999999999999999999999999


Q ss_pred             CC
Q 029425          191 FG  192 (193)
Q Consensus       191 ~~  192 (193)
                      ++
T Consensus       242 ~~  243 (371)
T 1f8f_A          242 SK  243 (371)
T ss_dssp             TT
T ss_pred             CC
Confidence            85

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.9e-40  Score=268.38  Aligned_cols=192  Identities=24%  Similarity=0.339  Sum_probs=172.9

Q ss_pred             CEEEEEcCCCCC-CceEEEeecCCCCC--CCeEEEEEeEecCChhhhhhhcCCCCCCCCCC---------CCCCcceEEE
Q 029425            1 MKAIVITQPGSP-EVLQLQEVEDPQIK--DDEVLIKVEATALNRADTLQRKGSYPPPKGAS---------PYPGLECSGT   68 (193)
Q Consensus         1 m~a~~~~~~~~~-~~~~~~~~~~~~~~--~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p---------~~lg~e~~G~   68 (193)
                      |||+++++++.| +.+++++.+.|.|+  ++||+|||.++++|++|++.+.|.++....+|         .++|||++|+
T Consensus         4 mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~~G~   83 (364)
T 1gu7_A            4 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFE   83 (364)
T ss_dssp             EEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEE
T ss_pred             EEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCceeEEE
Confidence            899999998865 45888888888777  99999999999999999999998765433456         8999999999


Q ss_pred             EEEecCCCCCCCCCCEEEEEc-cCceeeeEEeecCCceEECCC-----------CCCHHhHccCcchHHHHHHHHHHhcC
Q 029425           69 ILSVGKNVSRWKVGDQVCALL-GGGGYAEKVAVPAGQVLPVPS-----------GVSLKDAAAFPEVACTVWSTVFMTSH  136 (193)
Q Consensus        69 V~~vG~~~~~~~~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~-----------~~~~~~aa~~~~~~~~a~~~l~~~~~  136 (193)
                      |+++|+++..|++||+|++.. .+|+|++|+.++++.++++|+           +++++++|+++.+++|||+++.+..+
T Consensus        84 V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~  163 (364)
T 1gu7_A           84 VIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVK  163 (364)
T ss_dssp             EEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSC
T ss_pred             EEEeCCCCCcCCCCCEEEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhc
Confidence            999999999999999999874 469999999999999999998           89999999999999999999977678


Q ss_pred             CCCC-CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch----HHHHhhcCCcEEecCC
Q 029425          137 LSPG-ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR----FILCQPFNIRVFIGFG  192 (193)
Q Consensus       137 ~~~~-~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~----~~~~~~~G~~~~~~~~  192 (193)
                      +++| ++|+|+|++|.+|++++|+|+.+|+++++++++.++    .++++++|+++++|++
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~  224 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITED  224 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecC
Confidence            9999 999999999999999999999999999999877665    6788899999999874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=4.8e-40  Score=265.07  Aligned_cols=185  Identities=19%  Similarity=0.293  Sum_probs=170.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhh-hhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTL-QRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~-~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||++++++++   +++++.+.|+|+++||+|||.++++|++|++ ...|.++.  ++|.++|||++|+|+++|+++.+|
T Consensus         1 MkA~~~~~~~~---~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~--~~p~v~G~E~~G~V~~vG~~v~~~   75 (352)
T 3fpc_A            1 MKGFAMLSIGK---VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE--RHNMILGHEAVGEVVEVGSEVKDF   75 (352)
T ss_dssp             CEEEEEEETTE---EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC--CSSEECCCEEEEEEEEECTTCCSC
T ss_pred             CeEEEEccCCC---ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC--CCCcccCCcceEEEEEECCCCCcC
Confidence            99999998775   7889999999999999999999999999998 56777653  468999999999999999999999


Q ss_pred             CCCCEEEEEc------------------------------cCceeeeEEeecCC--ceEECCCCCCHHhHccCcchHHHH
Q 029425           80 KVGDQVCALL------------------------------GGGGYAEKVAVPAG--QVLPVPSGVSLKDAAAFPEVACTV  127 (193)
Q Consensus        80 ~~G~~V~~~~------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~~a  127 (193)
                      ++||+|+..+                              .+|+|++|+.+++.  .++++|+++++++++.++.++.||
T Consensus        76 ~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta  155 (352)
T 3fpc_A           76 KPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTG  155 (352)
T ss_dssp             CTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHH
T ss_pred             CCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHH
Confidence            9999998631                              36999999999976  899999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       128 ~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      |+++ +..++++|++|+|+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|+++++|++
T Consensus       156 ~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~  219 (352)
T 3fpc_A          156 FHGA-ELANIKLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYK  219 (352)
T ss_dssp             HHHH-HHTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGG
T ss_pred             HHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCC
Confidence            9999 7889999999999996 9999999999999999 899999999999999999999999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=4.5e-40  Score=265.95  Aligned_cols=187  Identities=22%  Similarity=0.294  Sum_probs=171.0

Q ss_pred             CEEEEEcCCCCCCceEEEe--ecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC-
Q 029425            1 MKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS-   77 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~--~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~-   77 (193)
                      |||+++++++.+  +++++  .+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++. 
T Consensus         7 mka~~~~~~~~~--l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~GhE~~G~V~~vG~~v~~   83 (360)
T 1piw_A            7 FEGIAIQSHEDW--KNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKSNS   83 (360)
T ss_dssp             EEEEEECCSSST--TSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTCCS
T ss_pred             eEEEEEecCCCC--eeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCC-CCCCcccCcCceEEEEEeCCCCCC
Confidence            899999988644  77788  8999999999999999999999999999887653 34689999999999999999999 


Q ss_pred             CCCCCCEEEEE-----------------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcc
Q 029425           78 RWKVGDQVCAL-----------------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE  122 (193)
Q Consensus        78 ~~~~G~~V~~~-----------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  122 (193)
                      +|++||+|...                                   ..+|+|++|+.++++.++++|++++++++|+++.
T Consensus        84 ~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  163 (360)
T 1piw_A           84 GLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLC  163 (360)
T ss_dssp             SCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGT
T ss_pred             CCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhhhhh
Confidence            99999999421                                   2358999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          123 VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       123 ~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++.|||+++.. .++++|++|||+|+ |.+|++++|+|+.+|++|++++++++++++++++|+++++|++
T Consensus       164 ~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~  231 (360)
T 1piw_A          164 GGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATL  231 (360)
T ss_dssp             HHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             hHHHHHHHHHH-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCc
Confidence            99999999965 89999999999999 9999999999999999999999999999999999999999875

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1.6e-40  Score=267.48  Aligned_cols=191  Identities=25%  Similarity=0.319  Sum_probs=171.6

Q ss_pred             CEEEEEc--CC-CCCCceEEEee---------cCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEE
Q 029425            1 MKAIVIT--QP-GSPEVLQLQEV---------EDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGT   68 (193)
Q Consensus         1 m~a~~~~--~~-~~~~~~~~~~~---------~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~   68 (193)
                      |||++++  ++ +.+..+++++.         +.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+
T Consensus        11 mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~   90 (349)
T 3pi7_A           11 MKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGT   90 (349)
T ss_dssp             EEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCSEEEEE
T ss_pred             heEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccceEEEE
Confidence            8999999  55 34566778888         999999999999999999999999999998776566899999999999


Q ss_pred             EEEecCCC-CCCCCCCEEEEEc---cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCC-CeE
Q 029425           69 ILSVGKNV-SRWKVGDQVCALL---GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPG-ESF  143 (193)
Q Consensus        69 V~~vG~~~-~~~~~G~~V~~~~---~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~-~~v  143 (193)
                      |+++|+++ .+|++||+|++..   .+|+|++|+.++++.++++|+++++++||+++..++|||+++ +..+ +++ +++
T Consensus        91 V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~~v  168 (349)
T 3pi7_A           91 IVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF-DIVK-QEGEKAF  168 (349)
T ss_dssp             EEEECSSHHHHHHTTCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHH-HHHH-HHCCSEE
T ss_pred             EEEECCCccCCCCCCCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHH-HHHh-hCCCCEE
Confidence            99999999 8999999999885   579999999999999999999999999999999999999666 4555 666 799


Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +|+|++|.+|++++|+++.+|++|++++++++++++++++|+++++|+++
T Consensus       169 li~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~  218 (349)
T 3pi7_A          169 VMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKA  218 (349)
T ss_dssp             EESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTS
T ss_pred             EEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCc
Confidence            99988999999999999999999999999999999999999999999863

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-39  Score=260.05  Aligned_cols=189  Identities=25%  Similarity=0.437  Sum_probs=173.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++..|+
T Consensus         6 mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   83 (347)
T 2hcy_A            6 QKGVIFYESHGK--LEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWK   83 (347)
T ss_dssp             EEEEEESSTTCC--CEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCSCC
T ss_pred             cEEEEEeCCCCC--CEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCCCc
Confidence            899999988744  888999999999999999999999999999999887654345789999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|+..+                            .+|+|+||+.++++.++++|++++++++++++.++.|||+++.
T Consensus        84 ~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~  163 (347)
T 2hcy_A           84 IGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALK  163 (347)
T ss_dssp             TTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHHH
Confidence            999998631                            2589999999999999999999999999999999999999995


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                       ..++++|+++||+|++|.+|++++|+++..|++|+++++++++.+.++++|++.++|+.
T Consensus       164 -~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~  222 (347)
T 2hcy_A          164 -SANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFT  222 (347)
T ss_dssp             -TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETT
T ss_pred             -hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecC
Confidence             45899999999999999999999999999999999999999999999999999999875

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=2.4e-39  Score=261.91  Aligned_cols=189  Identities=25%  Similarity=0.377  Sum_probs=173.4

Q ss_pred             CEEEEEcCCCCC--CceEE-EeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQPGSP--EVLQL-QEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~~~~--~~~~~-~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |||+++++++.+  +.+++ ++.+.|+|+++||+|||.++++|++|+..+.|.++....+|.++|||++|+|+++|+++.
T Consensus        24 MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG~~V~  103 (362)
T 2c0c_A           24 MQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSAS  103 (362)
T ss_dssp             EEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEECTTGG
T ss_pred             ceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEECCCcc
Confidence            899999998753  46888 999999999999999999999999999999987654345789999999999999999999


Q ss_pred             -CCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHH
Q 029425           78 -RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFA  156 (193)
Q Consensus        78 -~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~  156 (193)
                       .|++||+|++.. +|+|++|+.++++.++++|+. + .++++++.+++|||+++.+.+++++|++++|+|++|.+|+++
T Consensus       104 ~~~~vGdrV~~~~-~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~  180 (362)
T 2c0c_A          104 ARYTVGQAVAYMA-PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFA  180 (362)
T ss_dssp             GTCCTTCEEEEEC-SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHH
T ss_pred             CCCCCCCEEEEcc-CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHH
Confidence             999999999884 699999999999999999996 4 456778899999999998888999999999999889999999


Q ss_pred             HHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          157 IQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       157 i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|+++.+|++|++++++++++++++++|++.++|++
T Consensus       181 ~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~  216 (362)
T 2c0c_A          181 MQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYK  216 (362)
T ss_dssp             HHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecC
Confidence            999999999999999999999999999999999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=9.9e-40  Score=264.89  Aligned_cols=185  Identities=25%  Similarity=0.372  Sum_probs=170.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++   .+++++.+.|+|+++||+|||.++++|++|++.+.|.++  ..+|.++|||++|+|+++|+++..|+
T Consensus        24 mkA~v~~~~~---~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~--~~~p~v~G~e~~G~V~~vG~~v~~~~   98 (370)
T 4ej6_A           24 MKAVRLESVG---NISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP--STPPVTLGHEFCGIVVEAGSAVRDIA   98 (370)
T ss_dssp             EEEEEEEETT---EEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSEECCCSEEEEEEEECTTCCSSC
T ss_pred             eEEEEEecCC---ceEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC--CCCCeecCcceEEEEEEECCCCCCCC
Confidence            8999999875   399999999999999999999999999999999998764  34689999999999999999999999


Q ss_pred             CCCEEEEE---------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH
Q 029425           81 VGDQVCAL---------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM  133 (193)
Q Consensus        81 ~G~~V~~~---------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  133 (193)
                      +||+|++.                           ..+|+|++|+.++++.++++|++++++++| ++.++.++|+++ +
T Consensus        99 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~l-~  176 (370)
T 4ej6_A           99 PGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLACCLHGV-D  176 (370)
T ss_dssp             TTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHHHHHHH-H
T ss_pred             CCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHHHHHHHH-H
Confidence            99999873                           236999999999999999999999999987 778999999999 7


Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|++.++|+++
T Consensus       177 ~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~  236 (370)
T 4ej6_A          177 LSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSA  236 (370)
T ss_dssp             HHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTS
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCC
Confidence            889999999999998 9999999999999999 8999999999999999999999999853

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=5.8e-39  Score=259.24  Aligned_cols=190  Identities=22%  Similarity=0.274  Sum_probs=168.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||+..+...+.+..+++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.+|+
T Consensus         8 m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   86 (357)
T 2cf5_A            8 RKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFT   86 (357)
T ss_dssp             CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTC-CCSSBCCCCEEEEEEEEECSSCCSCC
T ss_pred             ceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCCC
Confidence            45444444455566999999999999999999999999999999999886543 34689999999999999999999999


Q ss_pred             CCCEEEEEc-----------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHH
Q 029425           81 VGDQVCALL-----------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC  125 (193)
Q Consensus        81 ~G~~V~~~~-----------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  125 (193)
                      +||+|+..+                                   .+|+|+||+.++++.++++|++++++++|+++.++.
T Consensus        87 vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~  166 (357)
T 2cf5_A           87 VGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGV  166 (357)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHH
T ss_pred             CCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhhhHH
Confidence            999997521                                   369999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCCcEEecCCC
Q 029425          126 TVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNIRVFIGFGY  193 (193)
Q Consensus       126 ~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~~~~~~~~~  193 (193)
                      |+|+++. ..+++ +|++|+|+|+ |.+|++++|+++.+|++|+++++++++++.++ ++|+++++|+++
T Consensus       167 ta~~~l~-~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~  234 (357)
T 2cf5_A          167 TVYSPLS-HFGLKQPGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSD  234 (357)
T ss_dssp             HHHHHHH-HTSTTSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTC
T ss_pred             HHHHHHH-hcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeecccc
Confidence            9999995 56788 9999999996 99999999999999999999999999999988 899999999864

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=6.7e-39  Score=257.59  Aligned_cols=185  Identities=23%  Similarity=0.298  Sum_probs=163.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCC-CCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQ-IKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~-~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++.   ++++|.+.|+ +++|||||||.++++|++|++.+.+..+.  .+|+++|||++|+|+++|+++..+
T Consensus         1 MkAvv~~~~g~---l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~--~~P~i~G~E~~G~V~~vG~~V~~~   75 (346)
T 4a2c_A            1 MKSVVNDTDGI---VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH--YYPITLGHEFSGYIDAVGSGVDDL   75 (346)
T ss_dssp             CEEEEECSSSC---EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS--SSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEecCCC---EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC--CCCccccEEEEEEEEEECCCcccc
Confidence            99999998875   9999999998 57999999999999999999988886543  479999999999999999999999


Q ss_pred             CCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           80 KVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        80 ~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      ++||+|...+                           .+|+|+||+.++++.++++|++++++++|++. ++.+++ .+.
T Consensus        76 ~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~-~~~  153 (346)
T 4a2c_A           76 HPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGL-HAF  153 (346)
T ss_dssp             CTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH-HHHHHH-HHH
T ss_pred             cCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhch-HHHHHH-HHH
Confidence            9999997632                           35899999999999999999999999988653 444444 444


Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ...+.++|++++|+|+ |.+|++++|+++++|++ +++++++++|+++++++|+++++||++
T Consensus       154 ~~~~~~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~  214 (346)
T 4a2c_A          154 HLAQGCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE  214 (346)
T ss_dssp             HHTTCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHhccCCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC
Confidence            7889999999999997 99999999999999985 567788999999999999999999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.5e-39  Score=260.91  Aligned_cols=188  Identities=19%  Similarity=0.265  Sum_probs=170.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||++++.++++  .+++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..|+
T Consensus        23 ~~a~~~~~~~~--~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~   99 (369)
T 1uuf_A           23 IKAVGAYSAKQ--PLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYA   99 (369)
T ss_dssp             CEEEEBSSTTS--CCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             EEEEEEcCCCC--CcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC-CCCCeecccCceEEEEEECCCCCCCC
Confidence            78888776543  4899999999999999999999999999999999886543 34689999999999999999999999


Q ss_pred             CCCEEEEE------------------------------------ccCceeeeEEeecCCceEECCCC-CCHHhHccCcch
Q 029425           81 VGDQVCAL------------------------------------LGGGGYAEKVAVPAGQVLPVPSG-VSLKDAAAFPEV  123 (193)
Q Consensus        81 ~G~~V~~~------------------------------------~~~g~~~~~~~~~~~~~~~~p~~-~~~~~aa~~~~~  123 (193)
                      +||+|+..                                    ..+|+|++|+.++++.++++|++ ++++++|+++.+
T Consensus       100 vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~  179 (369)
T 1uuf_A          100 PGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCA  179 (369)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTH
T ss_pred             CCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhhhhh
Confidence            99999852                                    13589999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          124 ACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       124 ~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +.|||+++.+ .++++|++|||+|+ |.+|++++|+|+.+|++|++++++++++++++++|++.++|+++
T Consensus       180 ~~tA~~al~~-~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~  247 (369)
T 1uuf_A          180 GITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRN  247 (369)
T ss_dssp             HHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTC
T ss_pred             HHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEecccc
Confidence            9999999965 68999999999997 99999999999999999999999999999999999999999863

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=2.2e-39  Score=260.87  Aligned_cols=186  Identities=28%  Similarity=0.342  Sum_probs=168.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcC-CCC-CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKG-SYP-PPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~-~~~-~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||+++++++.  .+++++.+.|+|+++||+|||.++++|++|++.+.| .++ ....+|.++|||++|+|+++|+++++
T Consensus         5 mka~~~~~~g~--~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   82 (348)
T 2d8a_A            5 MVAIMKTKPGY--GAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEG   82 (348)
T ss_dssp             EEEEEECSSSS--SCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             ceEEEEECCCC--CEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCc
Confidence            79999998874  488999999999999999999999999999999988 432 11246899999999999999999999


Q ss_pred             CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      |++||+|++.+                           .+|+|++|+.++++.++++|+++++++||.+ .++.+||+++
T Consensus        83 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~l  161 (348)
T 2d8a_A           83 IEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQ-EPLGNAVDTV  161 (348)
T ss_dssp             CCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTH-HHHHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhh-hHHHHHHHHH
Confidence            99999998753                           3599999999999999999999999999866 5888999999


Q ss_pred             HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                       ...++ +|++|+|+|+ |.+|++++|+++.+|+ +|++++++++++++++++|+++++|++
T Consensus       162 -~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~  220 (348)
T 2d8a_A          162 -LAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPF  220 (348)
T ss_dssp             -TTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTT
T ss_pred             -HhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCC
Confidence             67888 9999999999 9999999999999999 999999999999999999999999985

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-39  Score=259.52  Aligned_cols=191  Identities=23%  Similarity=0.354  Sum_probs=171.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+..+++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++  +++.|+
T Consensus         4 mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~~   81 (328)
T 1xa0_A            4 FQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRFR   81 (328)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSCC
T ss_pred             ceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCCC
Confidence            899999998765568999999999999999999999999999999888865443456899999999999995  467899


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH--HhcCCCCCC-eEEEEcCCch
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF--MTSHLSPGE-SFLVHGGSSG  151 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~vli~ga~g~  151 (193)
                      +||+|++..      .+|+|++|+.++++.++++|+++++++|+++++++.|+|.+++  ...++++++ +++|+|++|.
T Consensus        82 vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~  161 (328)
T 1xa0_A           82 EGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGG  161 (328)
T ss_dssp             TTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSH
T ss_pred             CCCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCH
Confidence            999999763      3699999999999999999999999999999989999998875  346788986 9999999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +|++++|+++.+|++|++++++++++++++++|+++++|+++
T Consensus       162 vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~  203 (328)
T 1xa0_A          162 VGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLARED  203 (328)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC-
T ss_pred             HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCC
Confidence            999999999999999999999999999999999999998863

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.6e-39  Score=257.74  Aligned_cols=186  Identities=25%  Similarity=0.289  Sum_probs=167.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhc-CCCC-CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRK-GSYP-PPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~-~~~~-~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||+++++++   .+++++.+.|+|+++||+|||.++++|++|++.+. +.+. ....+|.++|||++|+|+++|+++..
T Consensus         5 mka~~~~~~~---~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (352)
T 1e3j_A            5 NLSAVLYKQN---DLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   81 (352)
T ss_dssp             CEEEEEEETT---EEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             CEEEEEEcCC---cEEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCC
Confidence            8999999754   48899999999999999999999999999998877 3332 11246899999999999999999999


Q ss_pred             CCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHH
Q 029425           79 WKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST  130 (193)
Q Consensus        79 ~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~  130 (193)
                      |++||+|++.+                            .+|+|++|+.++++.++++|+++++++|+.+ .++.+||++
T Consensus        82 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~a  160 (352)
T 1e3j_A           82 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLSVGVHA  160 (352)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHHHHHHH
T ss_pred             CCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHHHHHHH
Confidence            99999998752                            3699999999999999999999999998854 688899999


Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      + +..++++|++|||+|+ |.+|++++|+++.+|++|++++++++++++++++|+++++|++
T Consensus       161 l-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~  220 (352)
T 1e3j_A          161 C-RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVD  220 (352)
T ss_dssp             H-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECC
T ss_pred             H-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCc
Confidence            9 6789999999999997 9999999999999999999999999999999999999999986

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2.8e-39  Score=259.76  Aligned_cols=186  Identities=27%  Similarity=0.360  Sum_probs=169.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++.  ...+|.++|||++|+|+++|+++.+
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   78 (343)
T 2dq4_A            1 MRALAKLAPEEG--LTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRR   78 (343)
T ss_dssp             CEEEEECSSSSS--CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CeEEEEeCCCCc--EEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCc
Confidence            999999998765  889999999999999999999999999999999886431  1346899999999999999999999


Q ss_pred             CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      |++||+|++.+                           .+|+|++|+.++++.++++|+++++++|+.+ .++.++|+++
T Consensus        79 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~l  157 (343)
T 2dq4_A           79 PQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGNAVHTV  157 (343)
T ss_dssp             SCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHHHHHHH
Confidence            99999998742                           4699999999999999999999999999865 6788999999


Q ss_pred             HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ....++ +|++++|+|+ |.+|++++|+|+.+|+ +|++++++++++++++++ +++++|++
T Consensus       158 ~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~  216 (343)
T 2dq4_A          158 YAGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPL  216 (343)
T ss_dssp             HSTTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTT
T ss_pred             HHhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcC
Confidence            647888 9999999999 9999999999999999 999999999999999999 99999986

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.2e-38  Score=256.54  Aligned_cols=189  Identities=29%  Similarity=0.392  Sum_probs=172.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC-------CCCCCCCCCcceEEEEEEec
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP-------PKGASPYPGLECSGTILSVG   73 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~-------~~~~p~~lg~e~~G~V~~vG   73 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++.       ...+|.++|||++|+|+++|
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG   78 (347)
T 1jvb_A            1 MRAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVG   78 (347)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEEC
T ss_pred             CeEEEEecCCCC--eEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEEC
Confidence            999999998754  888999999999999999999999999999998876542       23568999999999999999


Q ss_pred             CCCCCCCCCCEEEEEc---------------------------cCceeeeEEeecC-CceEECCCCCCHHhHccCcchHH
Q 029425           74 KNVSRWKVGDQVCALL---------------------------GGGGYAEKVAVPA-GQVLPVPSGVSLKDAAAFPEVAC  125 (193)
Q Consensus        74 ~~~~~~~~G~~V~~~~---------------------------~~g~~~~~~~~~~-~~~~~~p~~~~~~~aa~~~~~~~  125 (193)
                      +++.+|++||+|++..                           .+|+|++|+.+++ +.++++ ++++++++++++.++.
T Consensus        79 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~  157 (347)
T 1jvb_A           79 DEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGI  157 (347)
T ss_dssp             TTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHH
T ss_pred             CCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhhHH
Confidence            9999999999997653                           3589999999999 999999 9999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      |+|+++. ..+++++++++|+|++|.+|++++|+++.+ |++|+++++++++++.++++|++.++|+++
T Consensus       158 ta~~~l~-~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~  225 (347)
T 1jvb_A          158 TTYRAVR-KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASM  225 (347)
T ss_dssp             HHHHHHH-HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHHHHH-hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCC
Confidence            9999994 588999999999999779999999999999 999999999999999999999999998753

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=1.7e-38  Score=257.25  Aligned_cols=190  Identities=22%  Similarity=0.266  Sum_probs=171.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      ||+..+..++.+..+++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.+|+
T Consensus        15 mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~   93 (366)
T 1yqd_A           15 VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVTEVGSKVKKVN   93 (366)
T ss_dssp             EEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSC-CCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             eeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCC-CCCCEecccceEEEEEEECCCCCcCC
Confidence            67777777766777999999999999999999999999999999999886543 34689999999999999999999999


Q ss_pred             CCCEEEEEc-----------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHH
Q 029425           81 VGDQVCALL-----------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC  125 (193)
Q Consensus        81 ~G~~V~~~~-----------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  125 (193)
                      +||+|+..+                                   .+|+|++|+.++++.++++|++++++++|+++.++.
T Consensus        94 vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~  173 (366)
T 1yqd_A           94 VGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGI  173 (366)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHH
T ss_pred             CCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHH
Confidence            999997521                                   469999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC-CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCCcEEecCCC
Q 029425          126 TVWSTVFMTSHLS-PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNIRVFIGFGY  193 (193)
Q Consensus       126 ~a~~~l~~~~~~~-~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~~~~~~~~~  193 (193)
                      |+|+++. ..+++ +|++|+|+|+ |.+|++++|+++.+|++|+++++++++++.++ ++|++.++|+++
T Consensus       174 ta~~al~-~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~  241 (366)
T 1yqd_A          174 TVYSPLK-YFGLDEPGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRD  241 (366)
T ss_dssp             HHHHHHH-HTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTC
T ss_pred             HHHHHHH-hcCcCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccC
Confidence            9999995 45777 9999999997 99999999999999999999999999999887 899999998864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.9e-39  Score=259.01  Aligned_cols=186  Identities=22%  Similarity=0.310  Sum_probs=165.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCC-CCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP-PKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~-~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||+++++++.+  +++++.+.|+|+++||+|||.++++|++|++.+.|.++. ...+|.++|||++|+|+++|++ .+|
T Consensus         4 mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~   80 (344)
T 2h6e_A            4 SKAALLKKFSEP--LSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV   80 (344)
T ss_dssp             EEBCEECSCCC-------EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred             eEEEEEecCCCC--CeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence            899999988644  888899999999999999999999999999999887652 2346899999999999999999 999


Q ss_pred             CCCCEEEEEc---------------------------cCceeeeEEeec-CCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           80 KVGDQVCALL---------------------------GGGGYAEKVAVP-AGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        80 ~~G~~V~~~~---------------------------~~g~~~~~~~~~-~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      ++||+|++..                           .+|+|+||+.++ ++.++++ ++++++++|+++.++.|||+++
T Consensus        81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al  159 (344)
T 2h6e_A           81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAI  159 (344)
T ss_dssp             CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHH
Confidence            9999998753                           369999999999 9999999 9999999999999999999999


Q ss_pred             HHh----cCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          132 FMT----SHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       132 ~~~----~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ...    .++ +|++|||+|+ |.+|++++|+|+.+  |++|++++++++++++++++|+++++|++
T Consensus       160 ~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~  224 (344)
T 2h6e_A          160 RQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMK  224 (344)
T ss_dssp             HHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHH
T ss_pred             HhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccc
Confidence            654    288 9999999999 99999999999999  99999999999999999999999999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=2e-39  Score=259.21  Aligned_cols=190  Identities=26%  Similarity=0.377  Sum_probs=171.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+..+++++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++  ++.+|+
T Consensus         5 mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~~~~   82 (330)
T 1tt7_A            5 FQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDPRFA   82 (330)
T ss_dssp             EEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SSTTCC
T ss_pred             ceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCCCCC
Confidence            899999998766668999999999999999999999999999999998876544457899999999999996  457899


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH--HhcCCCCCC-eEEEEcCCch
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF--MTSHLSPGE-SFLVHGGSSG  151 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~vli~ga~g~  151 (193)
                      +||+|++..      .+|+|++|+.++++.++++|++++++++|+++..+.|+|.+++  ...++++++ +++|+|++|.
T Consensus        83 vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~  162 (330)
T 1tt7_A           83 EGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGG  162 (330)
T ss_dssp             TTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSH
T ss_pred             CCCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCH
Confidence            999999763      4699999999999999999999999999999989999998875  346788986 9999999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|++++|+++.+|++|++++++++++++++++|+++++|++
T Consensus       163 vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~  203 (330)
T 1tt7_A          163 VGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISRE  203 (330)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHH
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECC
Confidence            99999999999999999999999999999999999999864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.6e-38  Score=257.40  Aligned_cols=185  Identities=21%  Similarity=0.294  Sum_probs=167.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC---
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS---   77 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~---   77 (193)
                      |||+++++++  +.+++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++| ++.   
T Consensus        18 mka~~~~~~g--~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~P~v~GhE~~G~V~~vG-~V~~~~   93 (380)
T 1vj0_A           18 AHAMVLEKFN--QPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVN-GEKRDL   93 (380)
T ss_dssp             EEEEEBCSTT--SCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEES-SCCBCT
T ss_pred             eEEEEEecCC--CCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCC-CCCCcccCcCcEEEEEEeC-Cccccc
Confidence            8999999987  34889999999999999999999999999999999986642 3468999999999999999 988   


Q ss_pred             ---CCCCCCEEEEE------------------------------------ccCceeeeEEee-cCCceEECCCCCCHH-h
Q 029425           78 ---RWKVGDQVCAL------------------------------------LGGGGYAEKVAV-PAGQVLPVPSGVSLK-D  116 (193)
Q Consensus        78 ---~~~~G~~V~~~------------------------------------~~~g~~~~~~~~-~~~~~~~~p~~~~~~-~  116 (193)
                         .|++||+|++.                                    ..+|+|+||+.+ +++.++++|++++++ +
T Consensus        94 ~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l~~~~~  173 (380)
T 1vj0_A           94 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVL  173 (380)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTSCHHHH
T ss_pred             cCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCCCChHHh
Confidence               89999999874                                    125999999999 999999999999999 6


Q ss_pred             HccCcchHHHHHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          117 AAAFPEVACTVWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       117 aa~~~~~~~~a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      |+.+. ++.+||+++ ...+ +++|++|||+| +|.+|++++|+|+.+| ++|++++++++++++++++|+++++|++
T Consensus       174 Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~  248 (380)
T 1vj0_A          174 AMAMC-SGATAYHAF-DEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRR  248 (380)
T ss_dssp             HHHTT-HHHHHHHHH-HTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             Hhhhc-HHHHHHHHH-HhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEecc
Confidence            66555 999999999 5678 99999999999 6999999999999999 5999999999999999999999999975

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.4e-38  Score=256.82  Aligned_cols=186  Identities=23%  Similarity=0.284  Sum_probs=166.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCC-CC-CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGS-YP-PPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~-~~-~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |||+++++++   .+++++.+.|+|+++||+|||.++++|++|++.+.+. .. ....+|.++|||++|+|+++|+++.+
T Consensus         8 mka~~~~~~~---~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~   84 (356)
T 1pl8_A            8 NLSLVVHGPG---DLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (356)
T ss_dssp             CEEEEEEETT---EEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             ceEEEEecCC---cEEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCC
Confidence            8999999854   4889999999999999999999999999999887742 21 11236899999999999999999999


Q ss_pred             CCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHH
Q 029425           79 WKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST  130 (193)
Q Consensus        79 ~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~  130 (193)
                      |++||+|++.+                            .+|+|++|+.++++.++++|+++++++|+.+ .++.++|++
T Consensus        85 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~~a  163 (356)
T 1pl8_A           85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGIHA  163 (356)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHHHH
T ss_pred             CCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHHHH
Confidence            99999998742                            2699999999999999999999999998854 688899999


Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      + +..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|+++++|++
T Consensus       164 l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~  224 (356)
T 1pl8_A          164 C-RRGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQIS  224 (356)
T ss_dssp             H-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECS
T ss_pred             H-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCc
Confidence            9 6789999999999997 9999999999999999 999999999999999999999999986

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=7.3e-39  Score=262.53  Aligned_cols=192  Identities=25%  Similarity=0.394  Sum_probs=171.8

Q ss_pred             CEEEEEcCCCCCC-------------------------ceEEEeecCCC-CCCCeEEEEEeEecCChhhhhhhcCC----
Q 029425            1 MKAIVITQPGSPE-------------------------VLQLQEVEDPQ-IKDDEVLIKVEATALNRADTLQRKGS----   50 (193)
Q Consensus         1 m~a~~~~~~~~~~-------------------------~~~~~~~~~~~-~~~~evlV~v~~~~v~~~d~~~~~~~----   50 (193)
                      |||++++.++.|.                         .+++++.+.|+ |+++||+|||.++++|++|++.+.|.    
T Consensus         3 m~a~~~~~~~~p~~~~~~~~~~~~~~~~m~a~~~~~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~   82 (404)
T 3ip1_A            3 LRAVRLHAKWDPRPEFKLGPKDIEGKLTWLGSKVWRYPEVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGY   82 (404)
T ss_dssp             EEEEEEEEEECCCTTCCCCTTCBTTTBBSCGGGTEEEEEEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSB
T ss_pred             ceEEEecCCCCCCCCCCCCchhhhhhhhcceEEEEeCCceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCcc
Confidence            7999999877776                         78999999999 99999999999999999999988764    


Q ss_pred             --CCCCCCCCCCCCcceEEEEEEecCCC------CCCCCCCEEEEEc---------------------------cCceee
Q 029425           51 --YPPPKGASPYPGLECSGTILSVGKNV------SRWKVGDQVCALL---------------------------GGGGYA   95 (193)
Q Consensus        51 --~~~~~~~p~~lg~e~~G~V~~vG~~~------~~~~~G~~V~~~~---------------------------~~g~~~   95 (193)
                        ++...++|.++|||++|+|+++|+++      ..|++||+|++.+                           .+|+|+
T Consensus        83 ~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~a  162 (404)
T 3ip1_A           83 ILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFA  162 (404)
T ss_dssp             BSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSB
T ss_pred             ccccccCCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCc
Confidence              22223578999999999999999999      8899999998742                           469999


Q ss_pred             eEEeecCCceEECCCCCC------HHhHccCcchHHHHHHHHHHhc-CCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EE
Q 029425           96 EKVAVPAGQVLPVPSGVS------LKDAAAFPEVACTVWSTVFMTS-HLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RV  167 (193)
Q Consensus        96 ~~~~~~~~~~~~~p~~~~------~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v  167 (193)
                      +|+.++++.++++|++++      +.++++++.++.+||+++.... ++++|++|||+|+ |.+|++++|+|+.+|+ +|
T Consensus       163 ey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~V  241 (404)
T 3ip1_A          163 EYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKV  241 (404)
T ss_dssp             SEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEE
T ss_pred             ceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEE
Confidence            999999999999999875      5668889999999999996554 8999999999998 9999999999999999 89


Q ss_pred             EEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          168 FVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       168 ~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      ++++++++++++++++|+++++|+++
T Consensus       242 i~~~~~~~~~~~~~~lGa~~vi~~~~  267 (404)
T 3ip1_A          242 ILSEPSEVRRNLAKELGADHVIDPTK  267 (404)
T ss_dssp             EEECSCHHHHHHHHHHTCSEEECTTT
T ss_pred             EEECCCHHHHHHHHHcCCCEEEcCCC
Confidence            99999999999999999999999863

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=4.5e-39  Score=267.48  Aligned_cols=192  Identities=23%  Similarity=0.387  Sum_probs=169.2

Q ss_pred             CEEEEEcCCC-------------CCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCC----------------
Q 029425            1 MKAIVITQPG-------------SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSY----------------   51 (193)
Q Consensus         1 m~a~~~~~~~-------------~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~----------------   51 (193)
                      |||++++.++             .+..+++++.+.|+|+++||+|||.++++|++|++...+..                
T Consensus        31 mkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g~~~~~  110 (456)
T 3krt_A           31 YRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDL  110 (456)
T ss_dssp             EEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHHTSCHH
T ss_pred             eEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhccccccc
Confidence            7999999762             12458999999999999999999999999999986643210                


Q ss_pred             CCCCCCC-CCCCcceEEEEEEecCCCCCCCCCCEEEEEcc---------------------------CceeeeEEeecCC
Q 029425           52 PPPKGAS-PYPGLECSGTILSVGKNVSRWKVGDQVCALLG---------------------------GGGYAEKVAVPAG  103 (193)
Q Consensus        52 ~~~~~~p-~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~---------------------------~g~~~~~~~~~~~  103 (193)
                      .....+| .++|||++|+|+++|+++..|++||+|++.+.                           +|+|++|+.++++
T Consensus       111 ~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~  190 (456)
T 3krt_A          111 AKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSN  190 (456)
T ss_dssp             HHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGG
T ss_pred             cccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechH
Confidence            0112356 68999999999999999999999999997531                           4999999999999


Q ss_pred             ceEECCCCCCHHhHccCcchHHHHHHHHHHh--cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          104 QVLPVPSGVSLKDAAAFPEVACTVWSTVFMT--SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       104 ~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~--~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .++++|++++++++|+++.++.|||+++...  .++++|++|+|+|++|.+|++++|+|+.+|++|++++++++++++++
T Consensus       191 ~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~  270 (456)
T 3krt_A          191 QLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR  270 (456)
T ss_dssp             GEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             HeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence            9999999999999999988999999998654  78999999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEecCC
Q 029425          182 PFNIRVFIGFG  192 (193)
Q Consensus       182 ~~G~~~~~~~~  192 (193)
                      ++|++.++|++
T Consensus       271 ~lGa~~vi~~~  281 (456)
T 3krt_A          271 AMGAEAIIDRN  281 (456)
T ss_dssp             HHTCCEEEETT
T ss_pred             hhCCcEEEecC
Confidence            99999999975

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=6.6e-39  Score=265.85  Aligned_cols=191  Identities=28%  Similarity=0.437  Sum_probs=168.5

Q ss_pred             CEEEEEcCCCC-----------CCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhc----------------CCCCC
Q 029425            1 MKAIVITQPGS-----------PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRK----------------GSYPP   53 (193)
Q Consensus         1 m~a~~~~~~~~-----------~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~----------------~~~~~   53 (193)
                      |||++++.++.           +..+++++.+.|+|+++||+|||.++++|++|++...                +.+..
T Consensus        25 mkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g~~~~  104 (447)
T 4a0s_A           25 YLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWAT  104 (447)
T ss_dssp             EEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTTCGGGG
T ss_pred             heeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcccCcccc
Confidence            89999998761           1358999999999999999999999999999975321                22222


Q ss_pred             CCCCC-CCCCcceEEEEEEecCCCCCCCCCCEEEEEcc---------------------------CceeeeEEeecCCce
Q 029425           54 PKGAS-PYPGLECSGTILSVGKNVSRWKVGDQVCALLG---------------------------GGGYAEKVAVPAGQV  105 (193)
Q Consensus        54 ~~~~p-~~lg~e~~G~V~~vG~~~~~~~~G~~V~~~~~---------------------------~g~~~~~~~~~~~~~  105 (193)
                      ...+| .++|||++|+|+++|+++.+|++||+|++.+.                           +|+|+||+.++++.+
T Consensus       105 ~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~  184 (447)
T 4a0s_A          105 RHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQL  184 (447)
T ss_dssp             GGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGE
T ss_pred             ccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHc
Confidence            22356 69999999999999999999999999997541                           599999999999999


Q ss_pred             EECCCCCCHHhHccCcchHHHHHHHHHHh--cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          106 LPVPSGVSLKDAAAFPEVACTVWSTVFMT--SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       106 ~~~p~~~~~~~aa~~~~~~~~a~~~l~~~--~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      +++|++++++++|+++.++.|||+++...  .++++|++|+|+|++|.+|++++|+++++|++|++++++++++++++++
T Consensus       185 ~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~l  264 (447)
T 4a0s_A          185 LPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRAL  264 (447)
T ss_dssp             EECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            99999999999999999999999999643  8899999999999999999999999999999999999999999999999


Q ss_pred             CCcEEecC
Q 029425          184 NIRVFIGF  191 (193)
Q Consensus       184 G~~~~~~~  191 (193)
                      |++.++|+
T Consensus       265 Ga~~~i~~  272 (447)
T 4a0s_A          265 GCDLVINR  272 (447)
T ss_dssp             TCCCEEEH
T ss_pred             CCCEEEec
Confidence            99999985

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=4.9e-38  Score=248.44  Aligned_cols=178  Identities=35%  Similarity=0.570  Sum_probs=164.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.+..  +++.+.|+|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+          
T Consensus         1 Mka~~~~~~g~~~~--l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~----------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGPLE--LVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE----------   68 (302)
T ss_dssp             CEEEEECSTTSCEE--EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET----------
T ss_pred             CeEEEEcCCCCchh--eEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE----------
Confidence            99999999887743  448888999999999999999999999999998766434578999999999998          


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHH
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMG  160 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~  160 (193)
                       ||+|++...+|+|++|+.++++.++++|++++++++|+++.++.|||+++.... +++|++++|+|++|.+|++++|++
T Consensus        69 -GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a  146 (302)
T 1iz0_A           69 -GRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVA  146 (302)
T ss_dssp             -TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHH
T ss_pred             -CcEEEEecCCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHH
Confidence             999999987899999999999999999999999999999999999999997677 999999999999999999999999


Q ss_pred             HHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          161 KCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       161 ~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.+|++|++++++++++++++++|+++++|++
T Consensus       147 ~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~  178 (302)
T 1iz0_A          147 RAMGLRVLAAASRPEKLALPLALGAEEAATYA  178 (302)
T ss_dssp             HHTTCEEEEEESSGGGSHHHHHTTCSEEEEGG
T ss_pred             HHCCCEEEEEeCCHHHHHHHHhcCCCEEEECC
Confidence            99999999999999999999999999999875

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=2.6e-38  Score=255.36  Aligned_cols=182  Identities=15%  Similarity=0.169  Sum_probs=164.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCC---CCCCCcceEEEEEEecCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA---SPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~---p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |||+++++++.  .+++++.+.|+|+++||+|||.++++|++|++.+.|.++. ..+   |.++|||++| |+++|++ +
T Consensus         1 MkA~~~~~~~~--~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~E~~G-V~~vG~~-~   75 (357)
T 2b5w_A            1 MKAIAVKRGED--RPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGHEAVG-VVVDPND-T   75 (357)
T ss_dssp             CEEEEEETTCS--SCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT-SCTTCSEEECCSEEEE-EEEECTT-S
T ss_pred             CeEEEEeCCCC--ceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC-CCCCCCCcccCceeEE-EEEECCC-C
Confidence            99999998875  3888999999999999999999999999999999987553 335   8899999999 9999999 9


Q ss_pred             CCCCCCEEEEEc--------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHH
Q 029425           78 RWKVGDQVCALL--------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVAC  125 (193)
Q Consensus        78 ~~~~G~~V~~~~--------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  125 (193)
                      +|++||+|++.+                                .+|+|++|+.++++.++++|++++ + +|+++.++.
T Consensus        76 ~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~-~aal~~~~~  153 (357)
T 2b5w_A           76 ELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-E-LGFLIEPIS  153 (357)
T ss_dssp             SCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-T-TGGGHHHHH
T ss_pred             CCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-h-hhhhhchHH
Confidence            999999998751                                259999999999999999999999 5 456888999


Q ss_pred             HHHHHHHHhcCCCCC------CeEEEEcCCchHHHHH-HHHH-HHCCCE-EEEEeCCcc---hHHHHhhcCCcEEecCC
Q 029425          126 TVWSTVFMTSHLSPG------ESFLVHGGSSGIGTFA-IQMG-KCQGVR-VFVTAGLAT---RFILCQPFNIRVFIGFG  192 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~------~~vli~ga~g~~G~~~-i~~~-~~~g~~-v~~~~~~~~---~~~~~~~~G~~~~~~~~  192 (193)
                      |||+++ +..++++|      ++|+|+|+ |.+|+++ +|+| +.+|++ |++++++++   ++++++++|++++ |++
T Consensus       154 ta~~al-~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~  229 (357)
T 2b5w_A          154 ITEKAL-EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSR  229 (357)
T ss_dssp             HHHHHH-HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETT
T ss_pred             HHHHHH-HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCC
Confidence            999999 67888999      99999999 9999999 9999 999997 999999999   9999999999998 876

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=6.5e-38  Score=253.53  Aligned_cols=183  Identities=19%  Similarity=0.218  Sum_probs=163.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCC--------CCCCCeEEEEEeEecCChhhhhhhcCC-CC-CCCCCCCCCCcceEEEEE
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDP--------QIKDDEVLIKVEATALNRADTLQRKGS-YP-PPKGASPYPGLECSGTIL   70 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~--------~~~~~evlV~v~~~~v~~~d~~~~~~~-~~-~~~~~p~~lg~e~~G~V~   70 (193)
                      |||+++..++   .+++++.+.|        +|+++||+|||.++++|++|++.+.+. +. ...++|.++|||++|+|+
T Consensus         9 mka~~~~~~~---~l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~V~   85 (363)
T 3m6i_A            9 NIGVFTNPQH---DLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVI   85 (363)
T ss_dssp             CEEEEECTTC---CEEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEE
T ss_pred             ceeEEEeCCC---cEEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEEEE
Confidence            8999999654   3999999999        999999999999999999999888632 11 123468999999999999


Q ss_pred             EecCCCCCCCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcc
Q 029425           71 SVGKNVSRWKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPE  122 (193)
Q Consensus        71 ~vG~~~~~~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  122 (193)
                      ++|+++.+|++||+|++.+                            .+|+|+||+.++++.++++|+ +++++||.+ .
T Consensus        86 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~-~  163 (363)
T 3m6i_A           86 AVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAML-E  163 (363)
T ss_dssp             EECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHH-H
T ss_pred             EECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhh-h
Confidence            9999999999999998752                            469999999999999999999 999999876 6


Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCCcEEecC
Q 029425          123 VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       123 ~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++.+||+++ +..++++|++|||+|+ |.+|++++|+|+.+|++ |++++++++++++++++ ++.+++|
T Consensus       164 ~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~  230 (363)
T 3m6i_A          164 PLSVALAGL-QRAGVRLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTH  230 (363)
T ss_dssp             HHHHHHHHH-HHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEE
T ss_pred             HHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccc
Confidence            889999999 7889999999999998 99999999999999997 99999999999999999 7666654

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=1.4e-38  Score=258.94  Aligned_cols=188  Identities=24%  Similarity=0.265  Sum_probs=167.8

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC----------------------------
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP----------------------------   52 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~----------------------------   52 (193)
                      ||+++....  +..+++++.+.|+|+++||+|||.++++|++|++.+.|.++                            
T Consensus         8 mka~v~~~~--~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~~   85 (379)
T 3iup_A            8 LRSRIKSSG--ELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMA   85 (379)
T ss_dssp             EEEEECTTS--EEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHHG
T ss_pred             HHHHHhcCC--CCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccccc
Confidence            788876532  34599999999999999999999999999999999888531                            


Q ss_pred             CCCCCCCCCCcceEEEEEEecCCC-CCCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           53 PPKGASPYPGLECSGTILSVGKNV-SRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        53 ~~~~~p~~lg~e~~G~V~~vG~~~-~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      ....+|.++|||++|+|+++|+++ .+|++||+|++.. +|+|+||+.++++.++++|++++++++++++..++|||+++
T Consensus        86 ~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~  164 (379)
T 3iup_A           86 GRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV  164 (379)
T ss_dssp             GGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH
T ss_pred             cccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH
Confidence            012468899999999999999998 8899999999874 69999999999999999999999999999999999999877


Q ss_pred             HHhcCCCCCCeEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          132 FMTSHLSPGESFLVHG-GSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       132 ~~~~~~~~~~~vli~g-a~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      .. .. ++|++++|+| ++|.+|++++|+|+.+|++|++++++++|+++++++|+++++|+++
T Consensus       165 ~~-~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~  225 (379)
T 3iup_A          165 ET-MR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAAS  225 (379)
T ss_dssp             HH-HH-HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTS
T ss_pred             HH-hc-cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCC
Confidence            54 44 8999999995 6799999999999999999999999999999999999999999863

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=8.3e-38  Score=255.78  Aligned_cols=184  Identities=21%  Similarity=0.307  Sum_probs=167.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-CC-----CeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-KD-----DEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGK   74 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-~~-----~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~   74 (193)
                      |||++++.++   .+++++.+.|+| ++     +||+|||.++++|++|++.+.|.++  ..+|.++|||++|+|+++|+
T Consensus         3 MkA~~~~~~~---~l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~--~~~p~v~GhE~~G~V~~vG~   77 (398)
T 2dph_A            3 NKSVVYHGTR---DLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI--VPKGHVLGHEITGEVVEKGS   77 (398)
T ss_dssp             EEEEEEEETT---EEEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC--CCTTCBCCCCEEEEEEEECT
T ss_pred             cEEEEEEcCC---CEEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC--CCCCcccCCceEEEEEEECC
Confidence            8999999764   488999999987 67     9999999999999999999988643  34689999999999999999


Q ss_pred             CCCCCCCCCEEEEEc--------------------------------------cCceeeeEEeecCC--ceEECCCCCCH
Q 029425           75 NVSRWKVGDQVCALL--------------------------------------GGGGYAEKVAVPAG--QVLPVPSGVSL  114 (193)
Q Consensus        75 ~~~~~~~G~~V~~~~--------------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~  114 (193)
                      ++..|++||+|++.+                                      .+|+|+||+.++++  .++++|+++++
T Consensus        78 ~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~  157 (398)
T 2dph_A           78 DVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQA  157 (398)
T ss_dssp             TCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHHHH
T ss_pred             CCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCCCh
Confidence            999999999998631                                      25899999999987  89999999999


Q ss_pred             Hh----HccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEe
Q 029425          115 KD----AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       115 ~~----aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      ++    +++++.++.|||+++ +..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++++++++++|++ ++
T Consensus       158 ~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i  234 (398)
T 2dph_A          158 MEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE-TI  234 (398)
T ss_dssp             HHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE-EE
T ss_pred             hhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EE
Confidence            88    888999999999999 6789999999999997 9999999999999999 999999999999999999995 88


Q ss_pred             cCC
Q 029425          190 GFG  192 (193)
Q Consensus       190 ~~~  192 (193)
                      |++
T Consensus       235 ~~~  237 (398)
T 2dph_A          235 DLR  237 (398)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.1e-36  Score=243.83  Aligned_cols=186  Identities=17%  Similarity=0.178  Sum_probs=166.5

Q ss_pred             CEEEEEcC--CC--CCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcc----eEEEEEEe
Q 029425            1 MKAIVITQ--PG--SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLE----CSGTILSV   72 (193)
Q Consensus         1 m~a~~~~~--~~--~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e----~~G~V~~v   72 (193)
                      |||+++++  ++  .+..+++++.+.|+|+++||+|||.++++|++|+..+.+....  .+|.++|||    ++|+|++.
T Consensus         8 mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~--~~p~~~G~e~g~~~~G~V~~~   85 (336)
T 4b7c_A            8 NRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY--IPPVGIGEVMRALGVGKVLVS   85 (336)
T ss_dssp             EEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS--SCCCCTTSBCCCEEEEEEEEE
T ss_pred             ccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc--CCCCCCCcccCCceEEEEEec
Confidence            79999986  23  4677999999999999999999999999999999888764322  347777777    89999994


Q ss_pred             cCCCCCCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhH--ccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCc
Q 029425           73 GKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDA--AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSS  150 (193)
Q Consensus        73 G~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a--a~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g  150 (193)
                        +++.|++||+|++.   |+|++|+.++++.++++|+++++.++  ++++.+++|||+++.+..++++|+++||+|++|
T Consensus        86 --~v~~~~vGdrV~~~---G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g  160 (336)
T 4b7c_A           86 --KHPGFQAGDYVNGA---LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAG  160 (336)
T ss_dssp             --CSTTCCTTCEEEEE---CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTS
T ss_pred             --CCCCCCCCCEEecc---CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence              57899999999875   88999999999999999999977776  789999999999998889999999999999999


Q ss_pred             hHHHHHHHHHHHCCCEEEEEeCCcchHHHH-hhcCCcEEecCCC
Q 029425          151 GIGTFAIQMGKCQGVRVFVTAGLATRFILC-QPFNIRVFIGFGY  193 (193)
Q Consensus       151 ~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~-~~~G~~~~~~~~~  193 (193)
                      .+|++++|+++.+|++|+++++++++++.+ +++|++.++|+++
T Consensus       161 ~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~  204 (336)
T 4b7c_A          161 AVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKN  204 (336)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTT
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCC
Confidence            999999999999999999999999999999 8999999999763

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.7e-37  Score=252.67  Aligned_cols=184  Identities=21%  Similarity=0.338  Sum_probs=165.3

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCC-CCe------EEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEec
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIK-DDE------VLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVG   73 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~-~~e------vlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG   73 (193)
                      |||++++.++   .+++++.+.|+|. ++|      |+|||.++++|++|++.+.|.++  ..+|.++|||++|+|+++|
T Consensus         3 Mka~~~~~~~---~l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~p~v~GhE~~G~V~~vG   77 (398)
T 1kol_A            3 NRGVVYLGSG---KVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT--AQVGLVLGHEITGEVIEKG   77 (398)
T ss_dssp             EEEEEEEETT---EEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC--CCTTCBCCCCEEEEEEEEC
T ss_pred             cEEEEEecCC---ceEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC--CCCCcccCcccEEEEEEEC
Confidence            8999999764   4889999999986 888      99999999999999999988653  2368999999999999999


Q ss_pred             CCCCCCCCCCEEEEE-------------------------------------ccCceeeeEEeecCC--ceEECCCCCCH
Q 029425           74 KNVSRWKVGDQVCAL-------------------------------------LGGGGYAEKVAVPAG--QVLPVPSGVSL  114 (193)
Q Consensus        74 ~~~~~~~~G~~V~~~-------------------------------------~~~g~~~~~~~~~~~--~~~~~p~~~~~  114 (193)
                      +++..|++||+|+..                                     ..+|+|++|+.++++  .++++|+++++
T Consensus        78 ~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~~~~  157 (398)
T 1kol_A           78 RDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKA  157 (398)
T ss_dssp             TTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHH
T ss_pred             CCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCCcch
Confidence            999999999999742                                     125899999999986  89999999998


Q ss_pred             Hh----HccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEe
Q 029425          115 KD----AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       115 ~~----aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      ++    +++++.++.|||+++. ..++++|++|||+|+ |.+|++++|+|+.+|+ +|++++++++|+++++++|++ ++
T Consensus       158 ~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i  234 (398)
T 1kol_A          158 MEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-IA  234 (398)
T ss_dssp             HHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-EE
T ss_pred             hhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-EE
Confidence            87    7889999999999995 789999999999996 9999999999999999 799999999999999999997 78


Q ss_pred             cCC
Q 029425          190 GFG  192 (193)
Q Consensus       190 ~~~  192 (193)
                      |++
T Consensus       235 ~~~  237 (398)
T 1kol_A          235 DLS  237 (398)
T ss_dssp             ETT
T ss_pred             ccC
Confidence            875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2.6e-36  Score=243.61  Aligned_cols=188  Identities=20%  Similarity=0.282  Sum_probs=167.6

Q ss_pred             CEEEEE-cCC---CCC--CceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcC----CCCCCCCCCCCCCcceEEEE
Q 029425            1 MKAIVI-TQP---GSP--EVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKG----SYPPPKGASPYPGLECSGTI   69 (193)
Q Consensus         1 m~a~~~-~~~---~~~--~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~----~~~~~~~~p~~lg~e~~G~V   69 (193)
                      |||+++ +.+   +.|  ..+++++.+.|.| +++||+|||.++++|++|+..+.+    .+..+..+|.++|||++|+|
T Consensus         9 mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~~G~V   88 (357)
T 2zb4_A            9 VQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGII   88 (357)
T ss_dssp             EEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEEEEEE
T ss_pred             ceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccEEEEE
Confidence            899999 565   555  6799999999999 999999999999999999987765    23223356889999999999


Q ss_pred             EEecCCCCCCCCCCEEEEEccCceeeeEEeecCCceEECCCCC-----CHHhHccCcchHHHHHHHHHHhcCCCCC--Ce
Q 029425           70 LSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGV-----SLKDAAAFPEVACTVWSTVFMTSHLSPG--ES  142 (193)
Q Consensus        70 ~~vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~-----~~~~aa~~~~~~~~a~~~l~~~~~~~~~--~~  142 (193)
                      ++  +++..|++||+|++..  |+|++|+.++.+.++++|+++     +++ +++++.+++|||+++.+..++++|  ++
T Consensus        89 ~~--~~v~~~~vGdrV~~~~--G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~  163 (357)
T 2zb4_A           89 EE--SKHTNLTKGDFVTSFY--WPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKT  163 (357)
T ss_dssp             EE--ECSTTCCTTCEEEEEE--EESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCE
T ss_pred             Ee--cCCCCCCCCCEEEecC--CCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccE
Confidence            99  8888999999999873  889999999999999999998     544 778999999999999888999999  99


Q ss_pred             EEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh-cCCcEEecCCC
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP-FNIRVFIGFGY  193 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~-~G~~~~~~~~~  193 (193)
                      ++|+|++|++|++++|+++..|+ +|+++++++++++.+++ +|++.++|+++
T Consensus       164 vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~  216 (357)
T 2zb4_A          164 MVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK  216 (357)
T ss_dssp             EEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc
Confidence            99999999999999999999999 99999999999999987 99999998753

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=7.3e-36  Score=241.80  Aligned_cols=180  Identities=15%  Similarity=0.218  Sum_probs=158.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCC-CeEEEEEeEecCChhhhhhhcC--CCCCCCCC---CCCCCcceEEEEEEecC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKD-DEVLIKVEATALNRADTLQRKG--SYPPPKGA---SPYPGLECSGTILSVGK   74 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~-~evlV~v~~~~v~~~d~~~~~~--~~~~~~~~---p~~lg~e~~G~V~~vG~   74 (193)
                      |||+++++++.+  +++++.+.|+|++ +||+|||.++++|++|++.+.|  .++. ..+   |.++|||++|+|++  +
T Consensus         1 MkA~~~~~~g~~--l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~E~~G~V~~--~   75 (366)
T 2cdc_A            1 MKAIIVKPPNAG--VQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLST-LPKGKDFLVLGHEAIGVVEE--S   75 (366)
T ss_dssp             CEEEEECTTSCC--CEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC--------CCSCEECCSEEEEEECS--C
T ss_pred             CeEEEEeCCCCc--eEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCcceEEEEEe--C
Confidence            999999998763  8889999999999 9999999999999999999988  5442 235   88999999999999  6


Q ss_pred             CCCCCCCCCEEEEEc------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchH
Q 029425           75 NVSRWKVGDQVCALL------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVA  124 (193)
Q Consensus        75 ~~~~~~~G~~V~~~~------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  124 (193)
                      + .+|++||+|++.+                              .+|+|++|+.++++.++++|++++ ++| +++.++
T Consensus        76 ~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~A-al~~~~  152 (366)
T 2cdc_A           76 Y-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIG-ILAQPL  152 (366)
T ss_dssp             C-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTG-GGHHHH
T ss_pred             C-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhh-hhcCcH
Confidence            6 8899999998642                              469999999999999999999999 776 477899


Q ss_pred             HHHHHHHH--H--hcCCC--C-------CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc---chHHHHhhcCCcEE
Q 029425          125 CTVWSTVF--M--TSHLS--P-------GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA---TRFILCQPFNIRVF  188 (193)
Q Consensus       125 ~~a~~~l~--~--~~~~~--~-------~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~---~~~~~~~~~G~~~~  188 (193)
                      .++|+++.  .  ..+++  +       |++|+|+|+ |.+|++++|+++.+|++|+++++++   ++.++++++|++.+
T Consensus       153 ~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v  231 (366)
T 2cdc_A          153 ADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY  231 (366)
T ss_dssp             HHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee
Confidence            99999996  4  77888  8       999999999 9999999999999999999999998   89999999999887


Q ss_pred             ec
Q 029425          189 IG  190 (193)
Q Consensus       189 ~~  190 (193)
                       |
T Consensus       232 -~  232 (366)
T 2cdc_A          232 -N  232 (366)
T ss_dssp             -E
T ss_pred             -c
Confidence             6

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=1.8e-35  Score=259.35  Aligned_cols=183  Identities=28%  Similarity=0.418  Sum_probs=166.1

Q ss_pred             EEEcCCCCCCceEEEeecC--CCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            4 IVITQPGSPEVLQLQEVED--PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~--~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      +.+..+|.++.+++++.+.  |+|+++||+|||.++|+|++|+..+.|.++.    |.++|||++|+|+++|+++.+|++
T Consensus       213 l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~~----~~~lG~E~aG~V~~vG~~V~~~~v  288 (795)
T 3slk_A          213 LEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTGLAP  288 (795)
T ss_dssp             EEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCSS----CCCSCCCEEEEEEEECSSCCSSCT
T ss_pred             EecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCCC----CccccceeEEEEEEeCCCCCcCCC
Confidence            4566778888899988874  5789999999999999999999999987753    568999999999999999999999


Q ss_pred             CCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHH
Q 029425           82 GDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK  161 (193)
Q Consensus        82 G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~  161 (193)
                      ||+|+++. +|+|++|+.++.+.++++|++++++++|+++..++|+|+++.+.+++++|++|||+|++|++|++++|+|+
T Consensus       289 GDrV~~~~-~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk  367 (795)
T 3slk_A          289 GDRVMGMI-PKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLAR  367 (795)
T ss_dssp             TCEEEECC-SSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHH
T ss_pred             CCEEEEEe-cCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence            99999985 69999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          162 CQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       162 ~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      .+|++|+++++++ |.+.++ +|+++++|+++
T Consensus       368 ~~Ga~V~~t~~~~-k~~~l~-lga~~v~~~~~  397 (795)
T 3slk_A          368 HLGAEVYATASED-KWQAVE-LSREHLASSRT  397 (795)
T ss_dssp             HTTCCEEEECCGG-GGGGSC-SCGGGEECSSS
T ss_pred             HcCCEEEEEeChH-Hhhhhh-cChhheeecCC
Confidence            9999999998655 666666 99999998763

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=1.3e-33  Score=225.82  Aligned_cols=182  Identities=15%  Similarity=0.212  Sum_probs=158.9

Q ss_pred             CEEEEEcCC--CC--CCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCC
Q 029425            1 MKAIVITQP--GS--PEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNV   76 (193)
Q Consensus         1 m~a~~~~~~--~~--~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~   76 (193)
                      ||++++.++  +.  +..+++++.+.|+|+++||+|||.++++|+.|... ..    +..+|.++|||++|+|++.  ++
T Consensus         8 mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~----~~~~p~~~g~e~~G~Vv~~--~v   80 (333)
T 1v3u_A            8 AKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SK----RLKEGAVMMGQQVARVVES--KN   80 (333)
T ss_dssp             EEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TT----TCCTTSBCCCCEEEEEEEE--SC
T ss_pred             ccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cC----cCCCCcccccceEEEEEec--CC
Confidence            799999985  43  36799999999999999999999999999998732 21    2235788999999999995  56


Q ss_pred             CCCCCCCEEEEEccCceeeeEEeecCCceEECCCC----CCHHh-HccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCch
Q 029425           77 SRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSG----VSLKD-AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG  151 (193)
Q Consensus        77 ~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~----~~~~~-aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~  151 (193)
                      .+|++||+|++.   |+|++|+.++.+.++++|++    +++++ +++++.+++|||+++.+..++++|++++|+|++|+
T Consensus        81 ~~~~vGdrV~~~---g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~gg  157 (333)
T 1v3u_A           81 SAFPAGSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGA  157 (333)
T ss_dssp             TTSCTTCEEEEC---CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBH
T ss_pred             CCCCCCCEEEec---CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCc
Confidence            789999999875   78999999999999999997    88887 58899999999999988889999999999999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          152 IGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       152 ~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|++++|+++..|++|+++++++++++.++++|++.++|++
T Consensus       158 iG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~  198 (333)
T 1v3u_A          158 VGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYK  198 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecC
Confidence            99999999999999999999999999999999999999875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.1e-32  Score=221.45  Aligned_cols=187  Identities=18%  Similarity=0.230  Sum_probs=160.2

Q ss_pred             CEEEEEcCC--CCCC--ceEEE--eecCCC-CCCCeEEEEEeEecCChhhhhhhcCCCCCC---CCCCCCCCcceEEEEE
Q 029425            1 MKAIVITQP--GSPE--VLQLQ--EVEDPQ-IKDDEVLIKVEATALNRADTLQRKGSYPPP---KGASPYPGLECSGTIL   70 (193)
Q Consensus         1 m~a~~~~~~--~~~~--~~~~~--~~~~~~-~~~~evlV~v~~~~v~~~d~~~~~~~~~~~---~~~p~~lg~e~~G~V~   70 (193)
                      ||++++...  +.|.  .++++  +.+.|. |+++||+|||.++++|+.|. ...|.+...   ..+|.++|||++|++.
T Consensus         5 mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~   83 (345)
T 2j3h_A            5 NKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGV   83 (345)
T ss_dssp             EEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEE
T ss_pred             ceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceE
Confidence            699999886  6666  68888  788886 89999999999999998875 334433211   1358899999999999


Q ss_pred             E--ecCCCCCCCCCCEEEEEccCceeeeEEeecCCc--eEECCC---CCCHHhHccCcchHHHHHHHHHHhcCCCCCCeE
Q 029425           71 S--VGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQ--VLPVPS---GVSLKDAAAFPEVACTVWSTVFMTSHLSPGESF  143 (193)
Q Consensus        71 ~--vG~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~--~~~~p~---~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~v  143 (193)
                      +  +|+++++|++||+|++.   |+|++|+.++++.  ++++|+   +++++ +|+++.+++|||+++.+..++++|+++
T Consensus        84 ~GvV~~~v~~~~vGdrV~~~---g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~v  159 (345)
T 2j3h_A           84 SRIIESGHPDYKKGDLLWGI---VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETV  159 (345)
T ss_dssp             EEEEEECSTTCCTTCEEEEE---EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEE
T ss_pred             EEEEecCCCCCCCCCEEEee---cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEE
Confidence            9  99999999999999876   7799999998876  999996   35555 678889999999999888899999999


Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCCcEEecCC
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNIRVFIGFG  192 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~~~~~~~~  192 (193)
                      +|+|++|.+|++++|+++.+|++|+++++++++++.++ ++|++.++|++
T Consensus       160 lI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~  209 (345)
T 2j3h_A          160 YVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYK  209 (345)
T ss_dssp             EESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETT
T ss_pred             EEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecC
Confidence            99999999999999999999999999999999999998 79999999875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.93  E-value=9.7e-26  Score=215.43  Aligned_cols=177  Identities=27%  Similarity=0.361  Sum_probs=154.5

Q ss_pred             cCCCCCCceEEEeecCCC-CC--CCeEEEEEeEecCChhhhhhhcCCCCCC------CCCCCCCCcceEEEEEEecCCCC
Q 029425            7 TQPGSPEVLQLQEVEDPQ-IK--DDEVLIKVEATALNRADTLQRKGSYPPP------KGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~-~~--~~evlV~v~~~~v~~~d~~~~~~~~~~~------~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      ..++..+.+.+.+.+... +.  ++||+|+|.++++|+.|+....|.++..      ...|.++|+|++|+|.       
T Consensus      1536 ~~~g~l~sl~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~------- 1608 (2512)
T 2vz8_A         1536 LSRGDLSSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA------- 1608 (2512)
T ss_dssp             SSTTCTTSEEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET-------
T ss_pred             cCCCCcCceEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc-------
Confidence            345555667777766543 33  7899999999999999999998876421      1235689999999873       


Q ss_pred             CCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHH
Q 029425           78 RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAI  157 (193)
Q Consensus        78 ~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i  157 (193)
                         +||+|+++..+|+|++|+.++++.++++|+++++++||+++.+++|+|+++...+++++|++|||+|++|++|++++
T Consensus      1609 ---vGdrV~g~~~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAi 1685 (2512)
T 2vz8_A         1609 ---SGRRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAI 1685 (2512)
T ss_dssp             ---TSCCEEEECSSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHH
T ss_pred             ---cCCEEEEeecCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHH
Confidence               69999999878999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             HHHHHCCCEEEEEeCCcchHHHHhh----cCCcEEecCCC
Q 029425          158 QMGKCQGVRVFVTAGLATRFILCQP----FNIRVFIGFGY  193 (193)
Q Consensus       158 ~~~~~~g~~v~~~~~~~~~~~~~~~----~G~~~~~~~~~  193 (193)
                      |+|+.+|++|++++++++|.+++++    +|+++++|+++
T Consensus      1686 qlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~ 1725 (2512)
T 2vz8_A         1686 AIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRD 1725 (2512)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSS
T ss_pred             HHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCC
Confidence            9999999999999999999999986    78999998863

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.63  E-value=6.3e-16  Score=114.42  Aligned_cols=90  Identities=27%  Similarity=0.493  Sum_probs=73.4

Q ss_pred             CceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          103 GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       103 ~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      +.++++|++++++++++++.++.|+|+++.+..++++|++++|+|++|++|.+++++++..|++|+++++++++.+.+++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            45789999999999999999999999999777899999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEecCC
Q 029425          183 FNIRVFIGFG  192 (193)
Q Consensus       183 ~G~~~~~~~~  192 (193)
                      +|++.++|++
T Consensus        82 ~g~~~~~d~~   91 (198)
T 1pqw_A           82 LGVEYVGDSR   91 (198)
T ss_dssp             TCCSEEEETT
T ss_pred             cCCCEEeeCC
Confidence            9999888875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.40  E-value=2.5e-10  Score=93.22  Aligned_cols=126  Identities=15%  Similarity=0.115  Sum_probs=96.2

Q ss_pred             CCCCcceEEEEEEecCCCCCCCCCCEEEE---------EccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHH
Q 029425           59 PYPGLECSGTILSVGKNVSRWKVGDQVCA---------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWS  129 (193)
Q Consensus        59 ~~lg~e~~G~V~~vG~~~~~~~~G~~V~~---------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~  129 (193)
                      ...|++.++.+..+|+++..+.+|+.++.         ....|++++|+......++.+|++++.+.++. ..+..++|.
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~  153 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSA  153 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHH
Confidence            35788999999999999999999998621         11236678887777677778888776666543 345556776


Q ss_pred             HHHHhc---CCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchH-HHHhhcCCc
Q 029425          130 TVFMTS---HLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRF-ILCQPFNIR  186 (193)
Q Consensus       130 ~l~~~~---~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~-~~~~~~G~~  186 (193)
                      ++....   .-.+|++++|+|+ |.+|.++++.++.+|+ +|+++.++.++. ++++++|++
T Consensus       154 av~~a~~~~~~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~  214 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE  214 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHhccccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc
Confidence            663322   1247899999998 9999999999999999 999999999886 566778864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.69  E-value=7e-05  Score=60.54  Aligned_cols=49  Identities=24%  Similarity=0.182  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      ++++++|+|+ |.+|+.++++++.+|++|+++++++++.+.++++|++.+
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~  219 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI  219 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence            6899999997 999999999999999999999999999999999998654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.60  E-value=0.00013  Score=59.38  Aligned_cols=49  Identities=18%  Similarity=0.120  Sum_probs=44.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      ++++|+|+|+ |.+|+.++++++.+|++|++++++.++++.++++|++.+
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~  219 (401)
T 1x13_A          171 PPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFL  219 (401)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEE
Confidence            5789999997 999999999999999999999999999999988998644

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.54  E-value=0.00028  Score=58.77  Aligned_cols=62  Identities=19%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhc-CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          124 ACTVWSTVFMTS-HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       124 ~~~a~~~l~~~~-~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      ..+.|+++.+.. ...+|++++|.|. |.+|..+++.++.+|++|+++.+++.+.+.++++|++
T Consensus       257 ~~s~~~g~~r~~~~~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~  319 (494)
T 3ce6_A          257 RHSLIDGINRGTDALIGGKKVLICGY-GDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD  319 (494)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             hhhhhHHHHhccCCCCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE
Confidence            345666664332 2678999999997 9999999999999999999999999998888888875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.49  E-value=0.00046  Score=51.45  Aligned_cols=47  Identities=13%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+.+++|+|++|.+|..+++.+...|++|+++++++++.+.+.+.++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~   66 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGA   66 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCC
Confidence            46799999999999999999999999999999999998887776665

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.49  E-value=0.00018  Score=57.85  Aligned_cols=47  Identities=17%  Similarity=0.008  Sum_probs=44.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      ++.+|+|+|+ |.+|..+++.++.+|++|++.+++.++++.++++|++
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~  229 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQ  229 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCE
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence            6789999998 9999999999999999999999999999999999875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.42  E-value=0.0002  Score=57.38  Aligned_cols=45  Identities=20%  Similarity=0.178  Sum_probs=40.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      +++++|+|+ |.+|.++++.++.+|++|+++++++++.+.++++|+
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~  211 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG  211 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC
Confidence            489999998 999999999999999999999999999888876554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.40  E-value=0.0003  Score=57.04  Aligned_cols=47  Identities=19%  Similarity=0.170  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      ++.+|+|+|+ |.+|..++++++.+|++|++.+++.++++.++++|++
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~  235 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAK  235 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCc
Confidence            5789999998 9999999999999999999999999999999999985

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.37  E-value=0.00054  Score=47.92  Aligned_cols=51  Identities=14%  Similarity=0.193  Sum_probs=43.7

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCCcE
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNIRV  187 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~~~  187 (193)
                      ...++++++|.|+ |.+|..+++.++..|.+|+++++++++.+.++ +.|+..
T Consensus        15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~   66 (155)
T 2g1u_A           15 KKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFT   66 (155)
T ss_dssp             --CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEE
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcE
Confidence            3467889999997 99999999999999999999999999988887 677643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.31  E-value=0.00055  Score=55.14  Aligned_cols=47  Identities=19%  Similarity=0.141  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~  186 (193)
                      ++++++|+|+ |.+|..+++.++.+|++|+++++++++++.+++ +|++
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~  214 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGR  214 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCe
Confidence            5789999998 999999999999999999999999999888876 6765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.25  E-value=0.00089  Score=53.72  Aligned_cols=47  Identities=23%  Similarity=0.297  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~  186 (193)
                      ++++++|+|+ |.+|..+++.++.+|++|+++++++++.+.+++ +|++
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~  212 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR  212 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCce
Confidence            3589999998 999999999999999999999999998888765 7765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.19  E-value=0.0011  Score=43.59  Aligned_cols=47  Identities=15%  Similarity=0.111  Sum_probs=40.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .+.+++|+|+ |.+|..+++.+...| .+|+++.+++++.+.+.+.|+.
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~   51 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVA   51 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCE
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCc
Confidence            3568999999 999999999999999 7999999999988887766653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.12  E-value=0.0015  Score=44.79  Aligned_cols=49  Identities=14%  Similarity=0.072  Sum_probs=43.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      ..++++|.|. |.+|..+++.++..|.+|+++++++++.+.+++.|+..+
T Consensus         6 ~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i   54 (140)
T 3fwz_A            6 ICNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAV   54 (140)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEE
Confidence            4578999997 999999999999999999999999999999998887544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.06  E-value=0.0016  Score=46.72  Aligned_cols=48  Identities=17%  Similarity=0.011  Sum_probs=43.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      +++++|.|. |.+|..+++.++.. |.+|+++++++++.+.+++.|+..+
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~   87 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVI   87 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEE
Confidence            668999996 99999999999998 9999999999999999988887644

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.00  E-value=0.0017  Score=49.02  Aligned_cols=43  Identities=16%  Similarity=0.140  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+++++|+|+++++|...++.+...|++|+++.+++++.+.+.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   48 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLV   48 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4689999999999999999999999999999999988765543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.96  E-value=0.00044  Score=47.77  Aligned_cols=59  Identities=8%  Similarity=-0.008  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH-HhhcCC
Q 029425          125 CTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL-CQPFNI  185 (193)
Q Consensus       125 ~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~-~~~~G~  185 (193)
                      ..++.++. ......+++++|+|+ |.+|...++.++..|++|++..+++++.+. ++++|.
T Consensus         7 sv~~~a~~-~~~~~~~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~   66 (144)
T 3oj0_A            7 SIPSIVYD-IVRKNGGNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY   66 (144)
T ss_dssp             SHHHHHHH-HHHHHCCCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC
T ss_pred             cHHHHHHH-HHHhccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCC
Confidence            34454552 222234899999997 999999999999899999999999888765 445664

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.93  E-value=0.0023  Score=49.23  Aligned_cols=48  Identities=23%  Similarity=0.250  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~~  186 (193)
                      +|+++||+|+++++|.+.++.+...|++|+++.+++++++.+. ++|..
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~   76 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGG   76 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTT
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCC
Confidence            5889999999999999999999999999999999999887654 46653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.93  E-value=0.002  Score=48.16  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      ++++++|+|++|.+|..+++.+...|++|+++.+++++.+.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   48 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLV   48 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4689999999999999999999999999999999887766543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.92  E-value=0.0015  Score=48.97  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=39.7

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      ..+++++||+|++|++|...++.+...|++|+++.+++++.+.+.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   55 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLG   55 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            357889999999999999999999999999999999988776654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.91  E-value=0.0021  Score=48.72  Aligned_cols=43  Identities=21%  Similarity=0.334  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+++++|+|+++++|...++.+...|++|+++.+++++.+.+.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~   49 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIR   49 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999999999999999999988876664

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.91  E-value=0.0021  Score=48.54  Aligned_cols=42  Identities=24%  Similarity=0.232  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQV   52 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999998876554

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.90  E-value=0.0022  Score=48.87  Aligned_cols=48  Identities=19%  Similarity=0.167  Sum_probs=40.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH----hhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC----QPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~----~~~G~~  186 (193)
                      +|++++|+|+++++|.+.++.+...|++|+++.+++++++.+    ++.|..
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~   57 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKE   57 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence            478999999999999999998889999999999998877544    445654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.90  E-value=0.002  Score=50.57  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|++|..+++.+...|++|++++++.++.+.+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~   48 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKA   48 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            467999999999999999999999999999999998877554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.90  E-value=0.0028  Score=43.31  Aligned_cols=46  Identities=13%  Similarity=0.162  Sum_probs=41.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      ..+++|.|+ |.+|..+++.+...|.+|+++++++++.+.+++.|+.
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~   51 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFD   51 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCc
Confidence            467999998 9999999999999999999999999999988887764

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.89  E-value=0.0022  Score=48.26  Aligned_cols=42  Identities=21%  Similarity=0.141  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|..+++.+...|++|+++.+++++.+.+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~   49 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAV   49 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            468999999999999999999999999999999998876554

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.88  E-value=0.0022  Score=49.46  Aligned_cols=46  Identities=13%  Similarity=0.216  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FN  184 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G  184 (193)
                      .+++++|+|++|++|..+++.+...|++|+++++++++.+.+.+ ++
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~   61 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA   61 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999888776643 44

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.86  E-value=0.0019  Score=48.97  Aligned_cols=42  Identities=29%  Similarity=0.351  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|++|..++..+...|++|+++.++.++.+.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV   69 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            568999999999999999999989999999999998876554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.86  E-value=0.0085  Score=44.64  Aligned_cols=47  Identities=13%  Similarity=0.204  Sum_probs=40.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||..|+ | .|..+..+++. +.+++.++.+++..+.+++
T Consensus        85 ~~~~~~~~~~vldiG~-G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~  131 (248)
T 2yvl_A           85 LKLNLNKEKRVLEFGT-G-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQK  131 (248)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCC-C-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHH
Confidence            5667889999999996 6 69999999998 8899999999998888765

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.86  E-value=0.002  Score=48.26  Aligned_cols=42  Identities=24%  Similarity=0.352  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   54 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEV   54 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHH
Confidence            478999999999999999999999999999999998876554

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.85  E-value=0.0019  Score=49.46  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~  185 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++.++.+.+. +++.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~   76 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGN   76 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Confidence            4689999999999999999999999999999999988876654 3444

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.85  E-value=0.0026  Score=48.74  Aligned_cols=42  Identities=26%  Similarity=0.334  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVV   72 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988876554

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.84  E-value=0.0025  Score=47.78  Aligned_cols=42  Identities=24%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   51 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRA   51 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467899999999999999999999999999999988776544

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.84  E-value=0.002  Score=49.49  Aligned_cols=42  Identities=29%  Similarity=0.290  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ++.+++|+|++|++|..+++.+...|++|+++.+++++.+.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            467999999999999999999999999999999998876544

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.84  E-value=0.0021  Score=48.56  Aligned_cols=43  Identities=21%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++.+.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   48 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVH   48 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4689999999999999999988888999999999988776553

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.84  E-value=0.0019  Score=49.85  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|..+++.+...|++|++++++.++.+.+
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~   52 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEA   52 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999998875443

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.82  E-value=0.0027  Score=47.98  Aligned_cols=47  Identities=17%  Similarity=0.129  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~  185 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.+++++.+.+. +++.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   55 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGD   55 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999999988876654 3443

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.81  E-value=0.0026  Score=49.40  Aligned_cols=42  Identities=24%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|++|..+++.+...|++|+++.+++++.+.+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQA   71 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            578999999999999999999999999999999998876554

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.80  E-value=0.0028  Score=47.62  Aligned_cols=42  Identities=26%  Similarity=0.359  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|++|..+++.+...|++|+++.++.++.+.+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   47 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRAL   47 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            467999999999999999999999999999999988776544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.80  E-value=0.0069  Score=46.88  Aligned_cols=48  Identities=17%  Similarity=0.120  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      -.+++++|.|. |.+|..+++.++.+|++|++..++.++.+.++++|+.
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~  200 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLARIAEMGME  200 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSE
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCe
Confidence            36889999997 9999999999999999999999998877766667764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.80  E-value=0.0029  Score=48.10  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.++.++.+.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   51 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDV   51 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999998876554

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.79  E-value=0.0029  Score=47.95  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=36.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEA   47 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            367899999999999999999999999999999988766543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.79  E-value=0.003  Score=47.06  Aligned_cols=43  Identities=21%  Similarity=0.341  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      ++.+++|+|++|.+|..+++.+...|++|+++.++.++.+.+.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   48 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLA   48 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4678999999999999999999999999999999887665443

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.78  E-value=0.0029  Score=48.19  Aligned_cols=42  Identities=29%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|++|..+++.+...|++|+++.+++++.+.+
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   61 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEA   61 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988766543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.78  E-value=0.003  Score=48.04  Aligned_cols=42  Identities=29%  Similarity=0.312  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   48 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAA   48 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999998876554

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.78  E-value=0.0029  Score=48.33  Aligned_cols=42  Identities=26%  Similarity=0.208  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|.+|..+++.+...|++|+++.++.++.+.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   72 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEEL   72 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHH
Confidence            467999999999999999999999999999999987766543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.78  E-value=0.0025  Score=48.03  Aligned_cols=43  Identities=28%  Similarity=0.298  Sum_probs=38.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.+++++.+.+.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~   50 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAIS   50 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999999999999999999988766553

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.75  E-value=0.0033  Score=47.60  Aligned_cols=41  Identities=27%  Similarity=0.306  Sum_probs=36.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~   48 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELND   48 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46899999999999999999999999999999998876654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.75  E-value=0.0032  Score=47.81  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|++|...++.+...|++|+++.+++++.+.+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   53 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEAS   53 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988776544

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.75  E-value=0.0031  Score=48.35  Aligned_cols=47  Identities=21%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~  185 (193)
                      .++++||+|+++++|.++++.+...|++|+++.+++++.+.+. ++|.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   73 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGS   73 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999999988776554 3443

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.75  E-value=0.0033  Score=47.59  Aligned_cols=43  Identities=23%  Similarity=0.223  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++.++.+.+.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   49 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAA   49 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4689999999999999999999999999999999888766553

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.74  E-value=0.0033  Score=47.57  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAA   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467899999999999999999999999999999988766543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.74  E-value=0.0033  Score=47.65  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|++|..+++.+...|++|+++.+++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467899999999999999999988999999999988776544

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.72  E-value=0.0024  Score=49.15  Aligned_cols=42  Identities=26%  Similarity=0.329  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   73 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAA   73 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            578999999999999999999999999999999998876554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.72  E-value=0.0026  Score=43.21  Aligned_cols=46  Identities=13%  Similarity=0.109  Sum_probs=40.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      +++++|.|+ |.+|..+++.+...|.+|+++++++++.+.+++.|..
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~   51 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH   51 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE
Confidence            467999998 9999999999999999999999988888777776653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.72  E-value=0.0027  Score=48.19  Aligned_cols=42  Identities=29%  Similarity=0.402  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   50 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDAC   50 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999999998876543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.71  E-value=0.0035  Score=48.00  Aligned_cols=41  Identities=34%  Similarity=0.344  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   61 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT   61 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46799999999999999999999999999999998876544

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.71  E-value=0.003  Score=48.94  Aligned_cols=42  Identities=29%  Similarity=0.313  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   81 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSV   81 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            578999999999999999999999999999999998876554

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.71  E-value=0.0036  Score=47.79  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.+++++.+.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   52 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAA   52 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            4689999999999999999999999999999999988776553

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.70  E-value=0.0021  Score=48.95  Aligned_cols=48  Identities=23%  Similarity=0.223  Sum_probs=40.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH----hhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC----QPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~----~~~G~~  186 (193)
                      +|++++|+|+++++|.+.++.+...|++|++..+++++++..    ++.|.+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~   59 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYD   59 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence            578999999999999999999999999999999998876443    445554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.70  E-value=0.0032  Score=48.26  Aligned_cols=43  Identities=28%  Similarity=0.281  Sum_probs=36.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ..++++||+|+++++|..++..+...|++|+++.+++++.+.+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   64 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAA   64 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3578999999999999999999989999999999998876544

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.70  E-value=0.0037  Score=47.39  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|++|...++.+...|++|+++.++.++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKA   47 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988766543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.70  E-value=0.0036  Score=47.95  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   51 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGA   51 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988776443

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.70  E-value=0.0029  Score=47.25  Aligned_cols=42  Identities=26%  Similarity=0.318  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ++++++|+|++|.+|..+++.+...|++|+++.++.++.+.+
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   47 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAV   47 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            367899999999999999999999999999999988766543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.69  E-value=0.0029  Score=48.17  Aligned_cols=42  Identities=19%  Similarity=0.310  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.++.++.+.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988876544

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.69  E-value=0.0037  Score=47.15  Aligned_cols=42  Identities=21%  Similarity=0.058  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.+|..++..+...|++|+++.+++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            467899999999999999999999999999999988776554

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.69  E-value=0.0038  Score=46.95  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~   51 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMAT   51 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4688999999999999999999999999999999877654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.69  E-value=0.0038  Score=47.67  Aligned_cols=42  Identities=31%  Similarity=0.463  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|++|...++.+...|++|+++.+++++.+.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC   61 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988766543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.69  E-value=0.0067  Score=45.56  Aligned_cols=47  Identities=13%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc-chHH-HHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA-TRFI-LCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~-~~~~-~~~~~G~  185 (193)
                      .+++++|+|++|++|..+++.+...|++|+++.+++ ++.+ .+++.|.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   54 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGR   54 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCC
Confidence            467899999999999999999999999999999887 5544 3444553

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.68  E-value=0.0038  Score=47.24  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .++++||+|++|.+|..++..+...|++|+++.+++++.+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   53 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVV   53 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4689999999999999999999999999999999887765543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.68  E-value=0.0035  Score=48.00  Aligned_cols=42  Identities=38%  Similarity=0.395  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|++|..+++.+...|++|+++.+++++.+.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADT   69 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988766543

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.67  E-value=0.0039  Score=47.56  Aligned_cols=43  Identities=23%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+++++|+|++|++|...++.+...|++|+++.+++++.+.+.
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   50 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALE   50 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4689999999999999999999999999999999887765543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.67  E-value=0.0033  Score=47.54  Aligned_cols=41  Identities=20%  Similarity=0.174  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   53 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDR   53 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46899999999999999999999999999999998876543

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.67  E-value=0.004  Score=46.97  Aligned_cols=42  Identities=19%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.++.++.+.+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   52 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ   52 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHH
Confidence            467999999999999999999999999999999987766544

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.67  E-value=0.0024  Score=49.12  Aligned_cols=43  Identities=33%  Similarity=0.362  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .++++||+|+++++|..+++.+...|++|+++.+++++.+.+.
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   49 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELT   49 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4789999999999999999999999999999999988765543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.65  E-value=0.0029  Score=48.45  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   73 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAV   73 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            478999999999999999999999999999999988766544

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.65  E-value=0.0037  Score=47.62  Aligned_cols=42  Identities=24%  Similarity=0.140  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +|+++||+|+++++|.+.++.+...|++|++..+++++.+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~   47 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFL   47 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHH
Confidence            478999999999999999988888999999999987765443

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.65  E-value=0.0041  Score=47.37  Aligned_cols=42  Identities=17%  Similarity=0.122  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.+|..++..+...|++|+++.+++++.+.+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEET   71 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHH
Confidence            468999999999999999999999999999999988766543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.65  E-value=0.0032  Score=48.15  Aligned_cols=42  Identities=24%  Similarity=0.108  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|..++..+...|++|+++.+++++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988776544

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.65  E-value=0.0042  Score=47.12  Aligned_cols=41  Identities=22%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|...++.+...|++|+++.++.++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   46 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQ   46 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            46789999999999999999999999999999998776543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.65  E-value=0.0041  Score=47.82  Aligned_cols=42  Identities=26%  Similarity=0.251  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +++++||+|+++++|..+++.+...|++|+++.++.++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   68 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEV   68 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999998876554

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.64  E-value=0.0051  Score=46.88  Aligned_cols=47  Identities=21%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~  185 (193)
                      .++++||+|+++++|..+++.+...|++|+++.+++++.+.+. ++|.
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~   73 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGK   73 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC
Confidence            4789999999999999999999999999999999988776653 3554

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.63  E-value=0.003  Score=47.79  Aligned_cols=42  Identities=21%  Similarity=0.136  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.+++++.+.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   52 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAV   52 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999998888899999999988776544

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.62  E-value=0.0034  Score=47.39  Aligned_cols=42  Identities=24%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   47 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEP   47 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            468999999999999999999999999999999988766544

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.61  E-value=0.0033  Score=47.14  Aligned_cols=41  Identities=22%  Similarity=0.197  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+.+++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~   50 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH   50 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            46899999999999999999999999999999998776543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.61  E-value=0.0042  Score=47.56  Aligned_cols=42  Identities=19%  Similarity=0.313  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++.++.+.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   67 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTA   67 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999999988765443

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.61  E-value=0.0035  Score=47.61  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF-ILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~-~~~~~~G~  185 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++. +.+++.++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   73 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGA   73 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCC
Confidence            467899999999999999999989999999999987763 33344453

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.60  E-value=0.01  Score=47.26  Aligned_cols=48  Identities=17%  Similarity=0.214  Sum_probs=40.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      -+|+++.|.|. |.+|+.+++.++.+|++|++++.+.++.++.+++|+.
T Consensus       173 L~GktV~I~G~-GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~  220 (355)
T 1c1d_A          173 LDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT  220 (355)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE
Confidence            47899999996 9999999999999999999888776665566667764

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.60  E-value=0.0035  Score=48.09  Aligned_cols=43  Identities=19%  Similarity=0.180  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .++++||+|+++++|..+++.+...|++|+++.+++++.+.+.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~   70 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAA   70 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999999899999999999988776554

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.58  E-value=0.0076  Score=45.31  Aligned_cols=39  Identities=23%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      -.+++++|+|++|.+|..+++.+...|++|+++.++++.
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   55 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL   55 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            357899999999999999999999999999999988643

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.58  E-value=0.0067  Score=45.92  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc--hHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT--RFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~--~~~~~~~~G~~  186 (193)
                      .|++++|+|+++++|.+.++.+...|++|++..++.+  ..+.+++.|..
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~   57 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGN   57 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCc
Confidence            4789999999999999999999999999999998753  34566667754

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.58  E-value=0.012  Score=45.36  Aligned_cols=42  Identities=14%  Similarity=0.203  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ++++++|+|++|++|.+++..+...|++|+++.++.++.+.+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l  159 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAA  159 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHH
Confidence            578999999889999999999999999999999987776544

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.58  E-value=0.0048  Score=47.63  Aligned_cols=41  Identities=24%  Similarity=0.363  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.++.++.+.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~   57 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKS   57 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            36799999999999999999999999999999998776644

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.58  E-value=0.0037  Score=47.84  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .++++||+|+++++|...++.+...|++|+++.++.++.+.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   69 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETA   69 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5688999999999999999999999999999999988776553

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.57  E-value=0.0035  Score=47.37  Aligned_cols=41  Identities=32%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .|+++||+|+++++|.+.++.+...|++|+++.+++++++.
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~   50 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA   50 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh
Confidence            58999999999999999999999999999999998876654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.57  E-value=0.0038  Score=47.47  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++.+.+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   50 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNET   50 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999999999999999999988766443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.56  E-value=0.0061  Score=47.34  Aligned_cols=47  Identities=17%  Similarity=0.109  Sum_probs=41.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      -.+++++|+|. |.+|..+++.++.+|++|++..++.++.+.+.++|+
T Consensus       155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~  201 (300)
T 2rir_A          155 IHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARITEMGL  201 (300)
T ss_dssp             STTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC
Confidence            36889999997 999999999999999999999999887776656665

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.56  E-value=0.005  Score=47.46  Aligned_cols=42  Identities=14%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|++|.+|..++..+...|++|+++.++.++.+.+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~   66 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKAT   66 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467899999999999999999999999999999988766543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.56  E-value=0.0039  Score=48.31  Aligned_cols=42  Identities=29%  Similarity=0.386  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|++|..+++.+...|++|+++.+++++.+.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEET   66 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468899999999999999999999999999999988776543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.53  E-value=0.0043  Score=46.90  Aligned_cols=41  Identities=22%  Similarity=0.258  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~   53 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNE   53 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46789999999999999999999999999999998776654

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.53  E-value=0.0046  Score=46.34  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC-cchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL-ATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~-~~~~~~  179 (193)
                      .+++++|+|++|.+|..++..+...|++|+++.++ .++.+.
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   47 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDE   47 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHH
Confidence            36789999999999999999999999999999998 665543

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.52  E-value=0.0037  Score=47.65  Aligned_cols=42  Identities=21%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|++|..+++.+...|++|+++.++.++.+.+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   56 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL   56 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence            468999999999999999999999999999999988776544

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.52  E-value=0.0096  Score=48.59  Aligned_cols=59  Identities=17%  Similarity=0.086  Sum_probs=46.0

Q ss_pred             HHHHHHHHhc-CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          126 TVWSTVFMTS-HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       126 ~a~~~l~~~~-~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      ..+.++.+.. ..-.|++++|.|. |.+|..+++.++.+|++|+++.+++.+...+...|+
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG~-G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~  264 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCGY-GEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF  264 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCceecCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC
Confidence            4445554433 3457999999997 999999999999999999999988776665555664

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.52  E-value=0.011  Score=49.13  Aligned_cols=57  Identities=18%  Similarity=0.105  Sum_probs=44.8

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          128 WSTVFMTSHL-SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       128 ~~~l~~~~~~-~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      +.++.+..+. -.|++++|+|+ |.+|..+++.++.+|++|+++.+++.+...+...|+
T Consensus       252 ~dgi~r~tg~~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~  309 (488)
T 3ond_A          252 PDGLMRATDVMIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL  309 (488)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCcccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC
Confidence            3344333333 46899999997 899999999999999999999998887776666664

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.50  E-value=0.0034  Score=47.99  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|+++++|..+++.+...|++|+++.+++++.+.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQT   66 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999999988776544

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.50  E-value=0.0044  Score=47.20  Aligned_cols=42  Identities=21%  Similarity=0.128  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~~~~  180 (193)
                      .++++||+|++|++|..++..+...|++|+++.+ ++++.+.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   52 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRL   52 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHH
Confidence            4678999999999999999999999999999998 77665544

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.46  E-value=0.0065  Score=46.15  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.++.++.+.+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   56 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKV   56 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHH
Confidence            467899999999999999999999999999999887665443

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.46  E-value=0.0051  Score=46.33  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~~  178 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+ ++++.+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~   46 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEAN   46 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHH
Confidence            3678999999999999999999999999999998 665544

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.43  E-value=0.0063  Score=46.53  Aligned_cols=40  Identities=23%  Similarity=0.195  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      .++++||+|+++++|..+++.+...|++|+++.+++...+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   69 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKE   69 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHH
Confidence            4789999999999999999999999999999997654333

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.43  E-value=0.0091  Score=45.73  Aligned_cols=38  Identities=29%  Similarity=0.332  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .++++||+|++|++|..+++.+...|++|+++.++.++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   65 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            46899999999999999999999999999999987653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.43  E-value=0.0064  Score=47.40  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=37.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      -++.+|||+|++|.+|..++..+...|.+|++++++.++.+.+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            4578999999999999999999999999999999987765443

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.40  E-value=0.0067  Score=45.87  Aligned_cols=44  Identities=16%  Similarity=-0.027  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          137 LSPGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       137 ~~~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ..+++++||+|++  +++|...++.+...|++|+++.+++...+.+
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   56 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRI   56 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHH
Confidence            3568899999998  9999999999999999999999886544433

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.37  E-value=0.0058  Score=46.88  Aligned_cols=41  Identities=20%  Similarity=0.116  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++.+.
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~   83 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDS   83 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            36789999999999999999999999999998888766544

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.37  E-value=0.005  Score=47.34  Aligned_cols=41  Identities=17%  Similarity=0.139  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc-chHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA-TRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~-~~~~~  179 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.+++ ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHH
Confidence            467899999999999999999888999999999987 65543

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.36  E-value=0.0045  Score=46.82  Aligned_cols=43  Identities=16%  Similarity=0.103  Sum_probs=36.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCC---CEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQG---VRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g---~~v~~~~~~~~~~~~~~  181 (193)
                      ++.+++|+|++|.+|..+++.+...|   ++|+++.++.++.+.++
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~   65 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE   65 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHH
Confidence            46789999999999999999999999   99999999877554433

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.35  E-value=0.0063  Score=46.90  Aligned_cols=42  Identities=17%  Similarity=0.067  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~~~~  180 (193)
                      .++++||+|+++++|..+++.+...|++|+++. ++.++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHH
Confidence            467899999999999999999999999999999 888766544

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.35  E-value=0.0064  Score=46.27  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.++.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN   63 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            478999999999999999999999999999999843

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.34  E-value=0.011  Score=46.93  Aligned_cols=38  Identities=24%  Similarity=0.382  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .++++||+|+++++|...++.+...|++|+++.+++++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            47899999999999999999998999999999998764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.33  E-value=0.0069  Score=45.84  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCc-hHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSS-GIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g-~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++| ++|..++..+...|++|+++.++.++.+.+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   63 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGET   63 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence            478999999985 799999999989999999999998876554

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.33  E-value=0.0067  Score=45.92  Aligned_cols=40  Identities=25%  Similarity=0.233  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~~  178 (193)
                      .+.+++|+|++|.+|..++..+...|++|+++.+ +.++.+
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~   60 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE   60 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHH
Confidence            4679999999999999999999999999999998 665544

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.32  E-value=0.01  Score=45.54  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+++++|+|+++++|...++.+...|++|+++.+++++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   45 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEP   45 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            46899999999999999999998999999999998763

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.31  E-value=0.0097  Score=45.02  Aligned_cols=42  Identities=17%  Similarity=0.034  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCch--HHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSG--IGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~--~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.  +|...++.+...|++|+++.++++..+.+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   49 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSV   49 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHH
Confidence            4689999999955  99999999989999999999887544443

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.31  E-value=0.0067  Score=47.71  Aligned_cols=42  Identities=17%  Similarity=0.067  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~~~~  180 (193)
                      .++++||+|+++++|..+++.+...|++|+++. +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            467999999999999999999999999999999 888766544

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.31  E-value=0.0056  Score=46.09  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      -+++++|+|++|++|..+++.+...|++|+++.+++++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            46799999999999999999999999999999988754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.30  E-value=0.009  Score=45.67  Aligned_cols=34  Identities=15%  Similarity=0.222  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.+
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r   47 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDI   47 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            5789999999999999999999999999999987

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.29  E-value=0.0081  Score=45.56  Aligned_cols=37  Identities=14%  Similarity=0.264  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .++++||+|+++++|...++.+...|++|+++.++..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   46 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAK   46 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCcc
Confidence            4689999999999999999999999999999876543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.28  E-value=0.031  Score=43.06  Aligned_cols=53  Identities=17%  Similarity=0.115  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh-c-----------CCcEEecC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP-F-----------NIRVFIGF  191 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~-~-----------G~~~~~~~  191 (193)
                      -.+.+++|+|+ |+.|.+++..+...|+ +|+++.|+.++.+.+.+ +           .+|.+||.
T Consensus       120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~l~~DivIna  185 (282)
T 3fbt_A          120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNLKGDVIINC  185 (282)
T ss_dssp             CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTTCCCSEEEEC
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHhccCCEEEEC
Confidence            35789999997 9999999999999998 89999999988765532 2           56777765

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.28  E-value=0.0094  Score=45.55  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            47899999999999999999999999999999876

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.25  E-value=0.0091  Score=45.79  Aligned_cols=40  Identities=15%  Similarity=0.195  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~~  178 (193)
                      .++++||+|+++++|...++.+...|++|+++.+ +.++.+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~   64 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIR   64 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHH
Confidence            4689999999999999999999999999999998 444443

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.25  E-value=0.0065  Score=46.34  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +|+++||+|+++++|.+.++.+...|++|+++.++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            5889999999999999999999999999999998654

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.25  E-value=0.0076  Score=44.99  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..+++++|+|++|.+|..+++.+...|++|+++.++++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            35689999999999999999999999999999988754

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.23  E-value=0.0081  Score=45.78  Aligned_cols=40  Identities=28%  Similarity=0.193  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~~  178 (193)
                      .++++||+|+++++|..+++.+...|++|+++.+ +.++.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~   67 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAAD   67 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHH
Confidence            4789999999999999999999999999999887 444443

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.23  E-value=0.011  Score=45.78  Aligned_cols=42  Identities=17%  Similarity=-0.021  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSS--GIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g--~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .++++||+|++|  ++|...++.+...|++|+++.++++..+.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~   72 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRV   72 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            478999999986  999999999989999999999987654433

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.22  E-value=0.036  Score=42.16  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ |. |..++.+++..  +.+++.++.+++..+.+++
T Consensus       106 ~~~~~~~~~~VLDiG~-G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  155 (277)
T 1o54_A          106 MMLDVKEGDRIIDTGV-GS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  155 (277)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECC-cC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            5567889999999986 55 88889999985  5699999999988877764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.21  E-value=0.011  Score=44.80  Aligned_cols=39  Identities=23%  Similarity=0.275  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEE-eCCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT-AGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~-~~~~~~~  177 (193)
                      .++++||+|+++++|..+++.+...|++|+++ .+++++.
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   46 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGA   46 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence            46899999999999999999999999999988 4444443

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.20  E-value=0.0063  Score=46.37  Aligned_cols=42  Identities=21%  Similarity=0.100  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|++|.+|..++..+...|++|+++.++.++.+.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~   74 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKA   74 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999988888899999999887765443

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.20  E-value=0.0071  Score=46.11  Aligned_cols=40  Identities=25%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      ...++++||+|+++++|..+++.+...|++|+++.+++++
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   50 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS   50 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            4568999999999999999999999999999999887654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.18  E-value=0.011  Score=44.98  Aligned_cols=35  Identities=14%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            47899999999999999999999999999999876

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.17  E-value=0.011  Score=45.20  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+++++|+|+++++|...++.+...|++|+++.++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999999999999999999999999999876

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.17  E-value=0.0082  Score=45.20  Aligned_cols=39  Identities=26%  Similarity=0.311  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      .+++++|+|++|.+|..++..+...|++|+++.++.++.
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~   51 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA   51 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhh
Confidence            357899999999999999999999999999999865543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.17  E-value=0.019  Score=43.76  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            47899999999999999999999999999999986

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.17  E-value=0.0046  Score=46.48  Aligned_cols=38  Identities=34%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   51 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   51 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            46789999999999999999999999999999887654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.15  E-value=0.0072  Score=46.21  Aligned_cols=41  Identities=17%  Similarity=0.253  Sum_probs=36.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      +++||+|++|++|..+++.+...|++|+++.+++++.+.+.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~   62 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALA   62 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            78999999999999999999999999999999988766543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.15  E-value=0.012  Score=45.33  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .++++||+|+++++|..+++.+...|++|+++.+++++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG   83 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            47899999999999999999999999999999987653

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.15  E-value=0.012  Score=44.88  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .++++||+|+++++|...++.+...|++|+++.+
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEec
Confidence            4789999999999999999999999999999987

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.14  E-value=0.02  Score=44.25  Aligned_cols=35  Identities=14%  Similarity=0.198  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            47899999999999999999999999999999876

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.13  E-value=0.0077  Score=45.51  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+++++|+|++|.+|..+++.+...|++|+++.+++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   57 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEP   57 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHh
Confidence            36789999999999999999999999999999887654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.11  E-value=0.0038  Score=46.46  Aligned_cols=39  Identities=13%  Similarity=0.144  Sum_probs=34.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHH
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFIL  179 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~  179 (193)
                      .++||+|++|.+|..+++.+...| ++|+++++++++.+.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~   63 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK   63 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc
Confidence            579999999999999999999999 899999998776543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.11  E-value=0.013  Score=44.85  Aligned_cols=41  Identities=22%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchHH
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRFI  178 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~~  178 (193)
                      -.++++||+|+++++|..+++.+...|++|+++.+ ++++.+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~   68 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVA   68 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence            35789999999999999999999999999999985 555443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.10  E-value=0.01  Score=46.93  Aligned_cols=42  Identities=12%  Similarity=0.189  Sum_probs=36.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHC-CC-EEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQ-GV-RVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~-g~-~v~~~~~~~~~~~~~  180 (193)
                      .+.+|||+|++|.+|..+++.+... |. +|+++.+++++...+
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~   63 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEM   63 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHH
Confidence            4689999999999999999888887 98 999999987766544

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.08  E-value=0.01  Score=45.06  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .++++||+|++|++|..+++.+...|++|+++.+++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   42 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHD   42 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCc
Confidence            367899999999999999999999999999988764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.08  E-value=0.012  Score=45.94  Aligned_cols=40  Identities=13%  Similarity=0.176  Sum_probs=34.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      -+|||+|++|.+|..+++.+...|.+|++++++.++.+.+
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l   53 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL   53 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh
Confidence            4799999999999999999999999999999887655433

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.08  E-value=0.0069  Score=44.96  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcchH
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATRF  177 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~~  177 (193)
                      +.+++|+|++|.+|..+++.+...|+  +|+++++++++.
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~   57 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF   57 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence            57899999999999999999988999  999999876543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.04  E-value=0.012  Score=45.35  Aligned_cols=40  Identities=15%  Similarity=0.022  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCCch--HHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSG--IGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~--~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      .++++||+|++|.  +|..+++.+...|++|+++.++++..+
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~   71 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKK   71 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            5789999999965  999999999999999999998865433

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.03  E-value=0.0096  Score=46.38  Aligned_cols=42  Identities=24%  Similarity=0.171  Sum_probs=32.9

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      -+.+++.+|||+|++|.+|..+++.+...|.+|++++++.++
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   50 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS   50 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            345788999999999999999999999999999999987553

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.03  E-value=0.012  Score=47.16  Aligned_cols=47  Identities=13%  Similarity=0.052  Sum_probs=40.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH-HhhcCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL-CQPFNI  185 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~-~~~~G~  185 (193)
                      -.|++++|.|. |.+|..+++.+..+|++|++++++.++++. ++++|+
T Consensus       171 L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga  218 (364)
T 1leh_A          171 LEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA  218 (364)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC
T ss_pred             CCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence            36899999997 999999999999999999999988887764 344665

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.03  E-value=0.023  Score=44.89  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHH--CCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKC--QGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~--~g~~v~~~~~~~~  175 (193)
                      .+.+|||+|++|.+|..+++.+..  .|++|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            467999999999999999999888  8999999987543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.01  E-value=0.013  Score=47.97  Aligned_cols=58  Identities=17%  Similarity=0.048  Sum_probs=43.8

Q ss_pred             HHHHHHHh-cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          127 VWSTVFMT-SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       127 a~~~l~~~-~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+.++.+. ...-.|++++|.|. |.+|..+++.++.+|++|+++.+++.+...+...|+
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~-G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~  291 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGY-GDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGF  291 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCcccCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCc
Confidence            34444333 33457899999996 999999999999999999999887765544444554

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.99  E-value=0.014  Score=44.16  Aligned_cols=37  Identities=22%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+++++|+|++  |.+|..+++.+...|++|+++.++++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46789999998  99999999888888999999998875

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.99  E-value=0.019  Score=44.88  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+++++|...+..+...|++|+++.++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            57899999999999999999998999999999876

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.97  E-value=0.012  Score=44.65  Aligned_cols=42  Identities=36%  Similarity=0.341  Sum_probs=35.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEE-eCCcchHHH
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT-AGLATRFIL  179 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~-~~~~~~~~~  179 (193)
                      ..++++||+|+++++|..+++.+...|++|++. .++.++.+.
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~   66 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADA   66 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHH
Confidence            457899999999999999999999999999876 566555543

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.96  E-value=0.011  Score=45.21  Aligned_cols=56  Identities=18%  Similarity=0.115  Sum_probs=40.3

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc------chHH-HHhhcCCcEEecC
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA------TRFI-LCQPFNIRVFIGF  191 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~------~~~~-~~~~~G~~~~~~~  191 (193)
                      +.++..+|||+|++|.+|..+++.+...|.+|++++++.      +..+ .+++.++|.+|+.
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~   70 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINC   70 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEEC
Confidence            345678999999999999999999999999999998742      1222 2233478888864

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.96  E-value=0.0049  Score=46.95  Aligned_cols=38  Identities=29%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++.++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~   64 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAG   64 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            47899999999999999999999999999999887554

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.95  E-value=0.011  Score=44.90  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .++++||+|++|++|..++..+...|++|+++.++.++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   64 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP   64 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            46899999999999999999999999999999987553

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.01  Score=45.69  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV---RVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~---~v~~~~~~~~~~~~~~  181 (193)
                      .++++||+|+++++|..++..+...|+   +|+++.++.++.+.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~   77 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELK   77 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHH
Confidence            468999999999999998877766676   9999999988776553

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.91  E-value=0.015  Score=43.70  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++++|+|++|.+|...++.+...|++|+++.++.
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   41 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAF   41 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCch
Confidence            367899999999999999999999999999988764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.89  E-value=0.027  Score=42.77  Aligned_cols=35  Identities=29%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+++++|...++.+...|++|+++.+.
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~   51 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN   51 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            47899999999999999999999999999987764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.89  E-value=0.016  Score=44.31  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+++++|+|++  |++|..+++.+...|++|+++.++++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK   58 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            46899999998  89999999999889999999998875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.89  E-value=0.042  Score=41.91  Aligned_cols=41  Identities=20%  Similarity=0.130  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      ++++++|+|+ |++|.+++..+...|++|+++.++.++.+.+
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~l  158 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEEL  158 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            5789999998 8999999999999999999999998876544

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.87  E-value=0.013  Score=45.36  Aligned_cols=39  Identities=21%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .++..++||+|++|.+|..+++.+...|++|++++++.+
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   47 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE   47 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            467789999999999999999999999999999988754

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=95.86  E-value=0.016  Score=43.85  Aligned_cols=36  Identities=22%  Similarity=0.149  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++++|+|++  |.+|..+++.+...|++|+++.+++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            46789999998  9999999999999999999999876

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.86  E-value=0.018  Score=43.92  Aligned_cols=36  Identities=33%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .++++||+|+++++|...++.+...|++|+++.+..
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   65 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA   65 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            578999999999999999999999999999986543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.85  E-value=0.014  Score=44.38  Aligned_cols=40  Identities=23%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~~  178 (193)
                      .++++||+|+++++|.+.++.+...|++|++..+ ++++.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~   66 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAE   66 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            5789999999999999999888888999998744 444443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.84  E-value=0.029  Score=37.68  Aligned_cols=46  Identities=9%  Similarity=0.013  Sum_probs=38.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIR  186 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~  186 (193)
                      +.+++|.|+ |.+|..+++.+...|.+|+++++++++.+.+++ +|..
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~   50 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL   50 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE
Confidence            357999997 999999999999999999999998888877764 5653

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.83  E-value=0.018  Score=43.69  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=34.1

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGG--SSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga--~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+++++|+|+  ++++|..+++.+...|++|+++.+++++
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH
Confidence            4688999998  8999999999999999999999988765

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.82  E-value=0.02  Score=45.26  Aligned_cols=41  Identities=17%  Similarity=0.004  Sum_probs=35.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHH
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILC  180 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~  180 (193)
                      ..+|||+|++|.+|..+++.+... |.+|++++++.++...+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~   65 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL   65 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh
Confidence            468999999999999999988887 89999999987665443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.80  E-value=0.032  Score=42.73  Aligned_cols=44  Identities=20%  Similarity=0.132  Sum_probs=38.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN  184 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G  184 (193)
                      +.+++|+|+ |+.|.+++..+...|.+|+++.|+.++.+.+.++|
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~  161 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLG  161 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC
Confidence            789999997 99999999999999999999999999887664544

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.80  E-value=0.011  Score=44.45  Aligned_cols=40  Identities=30%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcch
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATR  176 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~  176 (193)
                      ..+++++||+|+++++|..++..+...|++|+++. ++.++
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~   50 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPR   50 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            35678999999999999999999999999999887 44443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.77  E-value=0.03  Score=43.68  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+++++|..+++.+...|++|++++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   79 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC   79 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999999999999999999999999998765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.74  E-value=0.047  Score=44.60  Aligned_cols=47  Identities=19%  Similarity=0.090  Sum_probs=40.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      -.|.++.|.|. |.+|..+++.++.+|++|+++.+++.+...+...|+
T Consensus       209 L~GktVgIiG~-G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~  255 (436)
T 3h9u_A          209 IAGKTACVCGY-GDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGY  255 (436)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             ccCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCC
Confidence            46899999996 999999999999999999999988877665555554

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.72  E-value=0.011  Score=46.26  Aligned_cols=38  Identities=18%  Similarity=0.153  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .++.+|||+|++|.+|..+++.+...|++|++++++++
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            45678999999999999999999999999999998764

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.72  E-value=0.028  Score=42.26  Aligned_cols=38  Identities=24%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .++++||+|+++++|..+++.+...|++|+++.++.++
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   45 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED   45 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHH
Confidence            36789999999999999999888899999999985543

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.71  E-value=0.018  Score=43.71  Aligned_cols=39  Identities=21%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~  177 (193)
                      .+++++|+|+++++|..+++.+...|++|+++. ++.++.
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~   63 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHV   63 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHH
Confidence            568899999999999999999999999999988 444433

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.70  E-value=0.018  Score=43.04  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEE-eCCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT-AGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~-~~~~~~~  177 (193)
                      .+++++|+|+++++|..+++.+...|++|+++ .++.++.
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~   45 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEA   45 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHH
Confidence            47899999999999999999999999999886 4444444

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.69  E-value=0.04  Score=42.02  Aligned_cols=43  Identities=16%  Similarity=0.041  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCc--chHHHHh
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLA--TRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~--~~~~~~~  181 (193)
                      .+++++|+|++  +++|...++.+...|++|+++.++.  +..+.+.
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~   71 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLC   71 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHH
Confidence            47899999998  5599999999999999999999887  5555554

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.69  E-value=0.025  Score=44.24  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .+++++|+|++|++|..+++.+...|++|++..+
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~   41 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   41 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence            4689999999999999999999999999999643

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.65  E-value=0.014  Score=45.94  Aligned_cols=37  Identities=19%  Similarity=0.099  Sum_probs=33.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      +.+|||+|++|.+|..+++.+...|.+|++++++.++
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   45 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   45 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence            5689999999999999999999999999999987654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.64  E-value=0.022  Score=43.96  Aligned_cols=35  Identities=31%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+++++|...++.+...|++|+++.++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999999999999999999999998876

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.60  E-value=0.063  Score=41.37  Aligned_cols=42  Identities=19%  Similarity=0.161  Sum_probs=36.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      -.+++++|+|+ |++|.+++..+...|+ +|+++.|+.++.+.+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            35789999998 9999999999999999 799999998887654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.59  E-value=0.022  Score=44.31  Aligned_cols=50  Identities=20%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      ...+++++++||.+|+ |..+..++.+++..|++|+.++.+++..+.+++.
T Consensus       116 ~la~l~~g~rVLDIGc-G~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~  165 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGG-GPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV  165 (298)
T ss_dssp             HHTTCCTTCEEEEECC-CSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECC-CccHHHHHHHHHccCCEEEEEECCHHHHHHHHHH
Confidence            3468899999999997 8777888888888899999999999998888753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.52  E-value=0.12  Score=39.73  Aligned_cols=69  Identities=17%  Similarity=0.059  Sum_probs=46.5

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      ++....+...|.....--.|.+++|.|.++.+|..+..++...|++|++..+....++..- ..+|.+|+
T Consensus       141 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~-~~ADIVI~  209 (285)
T 3p2o_A          141 PCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYT-RQADLIIV  209 (285)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-TTCSEEEE
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHh-hcCCEEEE
Confidence            3333334444433333347899999998777999999999999999998876655443321 35566665

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.48  E-value=0.049  Score=42.62  Aligned_cols=36  Identities=17%  Similarity=0.127  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +.+|||+|++|.+|..+++.+...|.+|++++++..
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            578999999999999999999999999999998543

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.47  E-value=0.028  Score=42.37  Aligned_cols=37  Identities=24%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+++++|+|+++++|..+++.+...|++|+++.++++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~   42 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT   42 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCCh
Confidence            3578999999999999999999999999999876543

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.46  E-value=0.047  Score=44.49  Aligned_cols=42  Identities=19%  Similarity=0.063  Sum_probs=34.5

Q ss_pred             hcCC-CCCCeEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCCcc
Q 029425          134 TSHL-SPGESFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGLAT  175 (193)
Q Consensus       134 ~~~~-~~~~~vli~ga~g~~G~~~i~~~~~-~g~~v~~~~~~~~  175 (193)
                      ...+ +.++++||+|+++++|.+....+.. .|++|+++.++.+
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~   97 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKP   97 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCch
Confidence            3455 4678899999999999998877777 8999999987654

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.45  E-value=0.024  Score=44.18  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +.+|||+|++|.+|..++..+...|.+|++++++.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~   44 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPD   44 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            678999999999999999999999999998887654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.45  E-value=0.13  Score=39.88  Aligned_cols=70  Identities=14%  Similarity=0.025  Sum_probs=46.5

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCcEEec
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIRVFIG  190 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~~~~~  190 (193)
                      ++....+...|.....--.|.+++|.|.++.+|..+..++...|++|++..+....+++.+. ..+|.+|+
T Consensus       146 PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~  216 (300)
T 4a26_A          146 PCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIA  216 (300)
T ss_dssp             CHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEE
T ss_pred             CCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEE
Confidence            33334444445333333478999999986779999999999999999988864444431011 35666664

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.42  E-value=0.15  Score=39.29  Aligned_cols=69  Identities=13%  Similarity=0.025  Sum_probs=45.5

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      ++....+...+.....-=.|.+++|.|.++.+|..+..++...|++|++..+....++..- ..+|.+|+
T Consensus       142 PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~  210 (285)
T 3l07_A          142 SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHT-TKADILIV  210 (285)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-TTCSEEEE
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhc-ccCCEEEE
Confidence            3333444444433332247899999998677999999999999999988876544433221 35566665

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.39  E-value=0.023  Score=44.29  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.+|||+|++|.+|..+++.+...|++|++++++.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            456899999999999999999999999999999854

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.37  E-value=0.023  Score=44.60  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ..+|+|+|++|.+|..+++.+...|.+|++++++.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            35799999999999999999999999999999976

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=95.32  E-value=0.026  Score=46.59  Aligned_cols=41  Identities=10%  Similarity=0.070  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHC---CCEEEEEeCCcchH
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQ---GVRVFVTAGLATRF  177 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~---g~~v~~~~~~~~~~  177 (193)
                      ...+.+|||+|++|.+|..+++.+...   |.+|++++++++..
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH
Confidence            356789999999999999988887776   89999999987654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.25  E-value=0.17  Score=38.93  Aligned_cols=69  Identities=16%  Similarity=0.021  Sum_probs=45.5

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      ++....++..|.....--.|.+++|.|.++.+|..+..++...|++|++..+....++..- ..+|.+|+
T Consensus       142 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~-~~ADIVI~  210 (286)
T 4a5o_A          142 PCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHV-SRADLVVV  210 (286)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-HTCSEEEE
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHh-ccCCEEEE
Confidence            3333444444433332347899999998777999999999999999998876444333221 34566664

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=95.23  E-value=0.091  Score=41.60  Aligned_cols=57  Identities=18%  Similarity=0.328  Sum_probs=46.9

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+++|++.+|..++|+.|+++...++.+|++.+++..   +..|.+.++.+|+..++
T Consensus        79 ~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~  138 (344)
T 3vc3_A           79 EKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELIL  138 (344)
T ss_dssp             HTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEE
Confidence            5566788887777888899999999999999998777665   45688888999997654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.22  E-value=0.03  Score=44.58  Aligned_cols=37  Identities=14%  Similarity=0.077  Sum_probs=33.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      ..+|||+|++|.+|..+++.+...|++|++++++.++
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   65 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   65 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            4689999999999999999999899999999987654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.22  E-value=0.026  Score=43.42  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +.+|||+|++|.+|..++..+...|.+|++++++..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            578999999999999999999999999999998765

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.17  E-value=0.11  Score=40.73  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC---cchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGL---ATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~---~~~~~~~  180 (193)
                      .+++++|+|+ |++|.+++..+...|+ +|+++.|+   .++.+.+
T Consensus       153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~l  197 (315)
T 3tnl_A          153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKT  197 (315)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred             cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHH
Confidence            5789999997 9999999999999999 89999998   5655443

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.16  E-value=0.035  Score=41.98  Aligned_cols=39  Identities=28%  Similarity=0.240  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~  177 (193)
                      .+++++|+|+++++|..+++.+...|++|++.. ++.++.
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~   64 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGA   64 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence            357899999999999999999999999997755 444443

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.15  E-value=0.033  Score=43.45  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+.+|||+|++|.+|..+++.+...|.+|++++++..
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   56 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT   56 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            3578999999999999999999989999999988643

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=95.15  E-value=0.098  Score=41.20  Aligned_cols=57  Identities=26%  Similarity=0.411  Sum_probs=45.7

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+++|++++|..++|+.|.++...++.+|.+.+++..   +..+.+.++.+|+..++
T Consensus        64 ~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  123 (334)
T 3tbh_A           64 KEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVIL  123 (334)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            4556788999767777899999999999999998777765   34577888899996554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.14  E-value=0.077  Score=40.50  Aligned_cols=41  Identities=10%  Similarity=0.049  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|+ |++|.+++..+...|++|+++.++.++.+.+
T Consensus       118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l  158 (272)
T 1p77_A          118 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKEL  158 (272)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            5789999998 9999999999989999999999998876555

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.10  E-value=0.055  Score=42.19  Aligned_cols=45  Identities=13%  Similarity=0.191  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++..++.++ +.+.+.|+
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~  185 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNG  185 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCc
Confidence            4679999996 999999999999999999999988776 45566665

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=95.09  E-value=0.019  Score=46.50  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .++.+|||+|++|.+|..++..+...|++|++++++++
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            34568999999999999999988888999999999877

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.08  E-value=0.086  Score=44.06  Aligned_cols=39  Identities=23%  Similarity=0.397  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~  175 (193)
                      ++++.++||+|++|.+|..++..+...|+ +|+++.++..
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~  295 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGP  295 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence            46789999999999999999998888999 6888888763

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.99  E-value=0.13  Score=39.59  Aligned_cols=41  Identities=17%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+ |++|.+++..+...|+ +|+++.|+.++.+.+
T Consensus       125 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  166 (281)
T 3o8q_A          125 KGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQL  166 (281)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHH
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHH
Confidence            5789999997 9999999998888997 999999998886554

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.96  E-value=0.032  Score=43.12  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+|+|+|++|.+|..+++.+...|.+|++++++.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            47999999999999999999999999999999764

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=94.94  E-value=0.065  Score=44.46  Aligned_cols=39  Identities=21%  Similarity=0.398  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~  175 (193)
                      ++++.++||+|++|.+|..+++.+...|+ +|+++.++..
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            56789999999999999999888888898 5888988764

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=94.93  E-value=0.036  Score=41.82  Aligned_cols=38  Identities=26%  Similarity=0.313  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+++++|+|++  +++|..+++.+...|++|+++.++.++
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~   58 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQ   58 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcch
Confidence            46899999998  899999999999999999999877543

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=94.83  E-value=0.13  Score=41.66  Aligned_cols=42  Identities=19%  Similarity=0.116  Sum_probs=33.9

Q ss_pred             hcCC-CCCCeEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCCcc
Q 029425          134 TSHL-SPGESFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGLAT  175 (193)
Q Consensus       134 ~~~~-~~~~~vli~ga~g~~G~~~i~~~~~-~g~~v~~~~~~~~  175 (193)
                      ...+ ..++++||+|+++++|.+.+..+.. .|++|+++.++.+
T Consensus        40 ~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~   83 (405)
T 3zu3_A           40 EGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERP   83 (405)
T ss_dssp             HCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             cCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCch
Confidence            3444 5678889999999999998877777 8999998876544

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.83  E-value=0.14  Score=39.69  Aligned_cols=41  Identities=15%  Similarity=0.030  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|+ |.+|.+++..+...|+ +|+++.++.++.+.+
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l  181 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERL  181 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            5789999997 9999999999999998 999999998876544

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.81  E-value=0.16  Score=39.72  Aligned_cols=41  Identities=12%  Similarity=0.206  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC---cchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGL---ATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~---~~~~~~~  180 (193)
                      .+++++|+|+ |+.|.+++..+...|+ +|+++.|+   .++.+.+
T Consensus       147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~l  191 (312)
T 3t4e_A          147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAF  191 (312)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHH
Confidence            5789999997 9999999999999998 89999999   5555443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.78  E-value=0.11  Score=39.68  Aligned_cols=41  Identities=12%  Similarity=0.047  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      .+++++|+|+ |+.|.+++..+...|+ +|+++.|+.++.+.+
T Consensus       119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~l  160 (272)
T 3pwz_A          119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALAL  160 (272)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH
T ss_pred             cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            5789999997 9999999999999996 999999998887654

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=94.77  E-value=0.057  Score=46.18  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .+++++|+|+++++|.+.+..+...|++|+++++
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r   51 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDL   51 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4789999999999999999999999999999876

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=94.74  E-value=0.046  Score=43.38  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+|||+|++|.+|..+++.+...|++|++++++.++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCcc
Confidence            589999999999999999999999999999987653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.73  E-value=0.05  Score=42.50  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.+|||+|++|.+|..+++.+...|.+|++++++.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            457899999999999999999999999999998754

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.70  E-value=0.055  Score=42.43  Aligned_cols=35  Identities=17%  Similarity=0.136  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      +.+|||+|++|.+|..++..+...|.+|++++++.
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            46899999999999999999999999999999865

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.65  E-value=0.051  Score=45.30  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      +.+|||+|++|.+|..+++.+...|.+|++++++..+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            6799999999999999999999999999999998654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.64  E-value=0.051  Score=43.16  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~  175 (193)
                      .+.+|||+|++|.+|..+++.+...| .+|++++++.+
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLS   68 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCC
Confidence            35689999999999999999999999 99999988654

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=94.60  E-value=0.12  Score=42.95  Aligned_cols=37  Identities=32%  Similarity=0.436  Sum_probs=31.7

Q ss_pred             CCC--CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCc
Q 029425          138 SPG--ESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLA  174 (193)
Q Consensus       138 ~~~--~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~  174 (193)
                      +++  .++||+|++|++|..+++.+...|+ +++++.++.
T Consensus       235 ~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          235 RPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             CCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            445  8999999999999999998888998 788888753

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=94.58  E-value=0.082  Score=45.12  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+++++|+|+++++|.+.++.+...|++|++..++.
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~   42 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGG   42 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            468899999999999999999999999999987643

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=94.57  E-value=0.26  Score=37.72  Aligned_cols=67  Identities=10%  Similarity=-0.021  Sum_probs=45.7

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      |+........+....  -.|.+++|.|.++.+|..+..++...|++|++..+....++..- ..+|.+|+
T Consensus       133 PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~-~~ADIVI~  199 (276)
T 3ngx_A          133 PATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMT-RSSKIVVV  199 (276)
T ss_dssp             CHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-HHSSEEEE
T ss_pred             CCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhh-ccCCEEEE
Confidence            444444455554444  57999999998677999999999999999998876554443221 23455543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.53  E-value=0.06  Score=42.82  Aligned_cols=47  Identities=19%  Similarity=0.176  Sum_probs=39.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .|.++.|+|. |.+|...++.++.+|++|+...++....+.++++|+.
T Consensus       163 ~gktvGIIG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~  209 (351)
T 3jtm_A          163 EGKTIGTVGA-GRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAK  209 (351)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCE
T ss_pred             cCCEEeEEEe-CHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCe
Confidence            4789999996 9999999999999999999999887666666666653

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=94.52  E-value=0.055  Score=43.18  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.+.+|||+|++|.+|..++..+...|++|+++++..
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~   45 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLV   45 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecC
Confidence            45788999999999999999999888999999998754

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=94.46  E-value=0.048  Score=42.85  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcch
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATR  176 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~  176 (193)
                      +.+|||+|++|.+|..+++.+...| .+|+++.+++.+
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   83 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG   83 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSG
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCc
Confidence            4689999999999999999999999 899999886543

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.43  E-value=0.061  Score=42.57  Aligned_cols=35  Identities=14%  Similarity=0.144  Sum_probs=31.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .++||+|++|.+|..+++.+...|++|++++++.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence            57999999999999999999999999999998754

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=94.39  E-value=0.067  Score=44.87  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEE-eCC
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVT-AGL  173 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~-~~~  173 (193)
                      ++++.++||+|++|++|..+++.+...|++ ++++ .++
T Consensus       248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            567899999999999999999888888997 6666 666

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=94.36  E-value=0.083  Score=39.32  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             CCCeEEEEcC----------------CchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGG----------------SSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga----------------~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|.++||+|+                +|.+|.+.++.+...|++|+++.++
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~   57 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGP   57 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999                6899999999999999999988654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=94.35  E-value=0.1  Score=40.73  Aligned_cols=46  Identities=22%  Similarity=0.253  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++..++.++. .+++.|+.
T Consensus       141 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~  186 (313)
T 2ekl_A          141 AGKTIGIVGF-GRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAK  186 (313)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCE
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCce
Confidence            5789999996 9999999999999999999999887764 35566653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.33  E-value=0.14  Score=35.13  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=33.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC-cchHHHH
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL-ATRFILC  180 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~-~~~~~~~  180 (193)
                      .++++|.|+ |.+|...++.+...|.+|++++++ +++.+.+
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~   43 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQL   43 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHH
Confidence            467899997 999999999999999999999986 4544444

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=94.30  E-value=0.17  Score=41.25  Aligned_cols=42  Identities=14%  Similarity=0.024  Sum_probs=32.7

Q ss_pred             hcCCCCCCeEEEEcCCchHHHH--HHHHHHHCCCEEEEEeCCcc
Q 029425          134 TSHLSPGESFLVHGGSSGIGTF--AIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~--~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ...+..++++||+|+++++|.+  ........|++|+++.++.+
T Consensus        54 ~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~   97 (418)
T 4eue_A           54 AIGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETG   97 (418)
T ss_dssp             SCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCC
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcc
Confidence            3445778999999999999998  55555556999999887543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.22  E-value=0.42  Score=37.06  Aligned_cols=52  Identities=12%  Similarity=-0.003  Sum_probs=38.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      -.|.+++|.|++..+|.-+.+++...|++|++..+....+...- ..||.+|.
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~  214 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV-NKGDILVV  214 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-TTCSEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHh-ccCCEEEE
Confidence            36899999998557899999999999999998876554443221 34566654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.20  E-value=0.15  Score=41.87  Aligned_cols=50  Identities=22%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc----hHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT----RFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~----~~~~~~~~G~~~~~  189 (193)
                      ++++++|+|. |..|++++++++..|++|.+++..+.    ..+.+++.|+...+
T Consensus         8 ~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~   61 (451)
T 3lk7_A            8 ENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVC   61 (451)
T ss_dssp             TTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEE
Confidence            4789999998 99999999999999999999998542    34567778875444

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=94.16  E-value=0.088  Score=43.32  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      +++++||+|++|++|..+++.+...|++|+++.++.
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~  247 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG  247 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            567999999999999999988888899999988754

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.12  E-value=0.089  Score=41.37  Aligned_cols=46  Identities=22%  Similarity=0.161  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+.++.|+|. |.+|...++.++.+|.+|++.+++.++.+.+.+.|+
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCc
Confidence            3678999997 999999999999999999999988776666666665

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=94.09  E-value=0.089  Score=41.74  Aligned_cols=47  Identities=9%  Similarity=-0.019  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHH-HCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~-~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .|.++.|+|. |.+|...++.++ .+|++|++..++.++.+.+.++|+.
T Consensus       162 ~g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~  209 (348)
T 2w2k_A          162 RGHVLGAVGL-GAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAE  209 (348)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCE
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcE
Confidence            5789999996 999999999999 9999999999887766655555653

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=94.06  E-value=0.066  Score=42.79  Aligned_cols=46  Identities=11%  Similarity=-0.031  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~G~  185 (193)
                      .|.++.|+|. |.+|...++.++.+|++ |++..++..+.+.+.++|+
T Consensus       163 ~g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~  209 (364)
T 2j6i_A          163 EGKTIATIGA-GRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGA  209 (364)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCc
Confidence            5789999996 99999999999999997 9999988766666666664

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=94.05  E-value=0.18  Score=38.67  Aligned_cols=40  Identities=5%  Similarity=0.048  Sum_probs=34.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+.+++|+|+ |++|.+++..+...| +|+++.++.++.+.+
T Consensus       127 ~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          127 KDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEAL  166 (287)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCHHHHHHH
Confidence            5789999998 799999999999999 999999988776544

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=94.04  E-value=0.26  Score=38.40  Aligned_cols=57  Identities=21%  Similarity=0.349  Sum_probs=45.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++...+|..++|+.|.+++..++.+|.+.+++..   +..+...++.+|+..++
T Consensus        59 ~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  118 (322)
T 1z7w_A           59 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVL  118 (322)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence            4556677765666677899999999999999998887775   46688888999996554

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.01  E-value=0.079  Score=40.68  Aligned_cols=39  Identities=15%  Similarity=0.033  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~  178 (193)
                      .+++++|+|+ |++|.+++..+...|+ +|+++.|+.++.+
T Consensus       116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~  155 (277)
T 3don_A          116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFN  155 (277)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGT
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            5788999997 9999999999999999 8999999988754

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=94.00  E-value=0.13  Score=40.66  Aligned_cols=45  Identities=13%  Similarity=0.192  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .|.++.|.|- |.+|...++.++.+|++|++..++.++ +.+.+.|+
T Consensus       164 ~g~tvgIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          164 NGKTLGILGL-GRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTC
T ss_pred             CcCEEEEEeE-CHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCc
Confidence            4679999996 999999999999999999999987665 34555665

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=93.97  E-value=0.097  Score=42.28  Aligned_cols=46  Identities=11%  Similarity=-0.034  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .|.++.|+|. |.+|...++.++.+|++|+...++..+.+..+++|+
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~  235 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL  235 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCc
Confidence            5789999996 999999999999999999999988666555555665

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=93.95  E-value=0.12  Score=40.73  Aligned_cols=45  Identities=16%  Similarity=0.154  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+.++.|+|. |.+|...++.++.+|++|++..++.++ +.++++|+
T Consensus       149 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          149 YGKTIGIIGL-GRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCc
Confidence            4679999997 999999999999999999999998876 55555554

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=93.93  E-value=0.085  Score=40.94  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGG--SSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga--~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+++++|+|+  ++++|..+++.+...|++|+++.++
T Consensus         8 ~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~   44 (315)
T 2o2s_A            8 RGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWP   44 (315)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECH
T ss_pred             CCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecc
Confidence            4689999998  7999999999988899999998764

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=93.82  E-value=0.11  Score=42.99  Aligned_cols=48  Identities=21%  Similarity=0.164  Sum_probs=39.6

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .-.|.++.|.|. |.+|..+++.++.+|++|+++.++..+...+...|+
T Consensus       254 ~l~GktVgIIG~-G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~  301 (479)
T 1v8b_A          254 LISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF  301 (479)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEee-CHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC
Confidence            346889999996 999999999999999999999998876544444454

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.78  E-value=0.14  Score=40.01  Aligned_cols=44  Identities=11%  Similarity=0.087  Sum_probs=40.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHhhcCC
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+|.|+|. |.+|...++.++..|.  +|++.++++++.+.++++|+
T Consensus        34 ~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            68999996 9999999999999998  99999999999998888886

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.77  E-value=0.13  Score=40.72  Aligned_cols=47  Identities=13%  Similarity=-0.034  Sum_probs=41.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      -.+|.|+|. |.+|...+..++..|.+|++.++++++.+.++++|+..
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~   54 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDV   54 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCee
Confidence            357999996 99999999999999999999999999999888888743

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=93.77  E-value=0.073  Score=41.94  Aligned_cols=46  Identities=13%  Similarity=-0.010  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+...++..+.+..+++|+
T Consensus       144 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          144 DNATVGFLGM-GAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc
Confidence            4679999996 999999999999999999999988755555555554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.74  E-value=0.072  Score=40.32  Aligned_cols=40  Identities=20%  Similarity=0.163  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      .+ +++|+|+ |++|.+++..+...|+ +|+++.|+.++.+.+
T Consensus       108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            45 9999997 9999999999999998 899999998887654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=93.74  E-value=0.14  Score=42.62  Aligned_cols=47  Identities=19%  Similarity=0.080  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      -.|.++.|.|. |.+|..+++.++.+|++|+++.++..+.......|+
T Consensus       275 L~GktVgIIG~-G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~  321 (494)
T 3d64_A          275 IAGKIAVVAGY-GDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGY  321 (494)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTC
T ss_pred             cCCCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCC
Confidence            46889999996 999999999999999999999998876433334444

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=93.73  E-value=0.13  Score=40.28  Aligned_cols=45  Identities=9%  Similarity=0.001  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC-CcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG-LATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~-~~~~~~~~~~~G~  185 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++..+ +.++ ..++++|+
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~  190 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQA  190 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCc
Confidence            5679999996 99999999999999999999998 7665 34455665

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=93.70  E-value=0.17  Score=43.13  Aligned_cols=48  Identities=17%  Similarity=0.101  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc-c-hHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA-T-RFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~-~-~~~~~~~~G~~  186 (193)
                      .+++++|+|+++++|.+.++.+...|++|++..+.. + -.+.+++.|..
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~  370 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGE  370 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCe
Confidence            367899999999999999999999999999887422 2 22444455543

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=93.69  E-value=0.061  Score=41.89  Aligned_cols=37  Identities=14%  Similarity=0.112  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCC-------CEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQG-------VRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g-------~~v~~~~~~~~  175 (193)
                      .+.+|||+|++|.+|..+++.+...|       .+|++++++.+
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~   56 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQP   56 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCC
Confidence            35689999999999999999888888       79999887653

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.68  E-value=0.24  Score=37.86  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHH
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILC  180 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~  180 (193)
                      ...+.+++|+|+ |+.+.+++..+...|+ +|+++.|+.+|.+.+
T Consensus       116 ~~~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~l  159 (271)
T 1npy_A          116 LNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL  159 (271)
T ss_dssp             CCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            345678999997 9999999999999998 799999998876554

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=93.67  E-value=0.32  Score=39.75  Aligned_cols=57  Identities=25%  Similarity=0.368  Sum_probs=45.6

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+++|...+|...+|+.|.++...++.+|.+.+++..   +..+.+.++.+|+..++
T Consensus       167 ~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~  226 (430)
T 4aec_A          167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL  226 (430)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEE
Confidence            4556778877777777899999999999999998777765   45678888899997554

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.63  E-value=0.16  Score=38.87  Aligned_cols=45  Identities=9%  Similarity=-0.028  Sum_probs=39.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+|.|+|++|.+|...+..+...|.+|+++++++++.+.+++.|+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~   56 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGI   56 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCC
Confidence            479999977999999999998899999999999888887776664

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=93.53  E-value=0.39  Score=37.24  Aligned_cols=56  Identities=16%  Similarity=0.236  Sum_probs=43.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++++|+. +.+|+.|.+++..++.+|.+.+++..   +..+.+.++.+|+..++
T Consensus        60 ~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~  118 (313)
T 2q3b_A           60 QAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELIL  118 (313)
T ss_dssp             HTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            3445566666544 77899999999999999998887775   45688888999996554

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=93.35  E-value=0.2  Score=44.15  Aligned_cols=51  Identities=18%  Similarity=0.283  Sum_probs=38.4

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHH-HCCCE-EEEEeCCcc---h----HHHHhhcCCcE
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGK-CQGVR-VFVTAGLAT---R----FILCQPFNIRV  187 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~-~~g~~-v~~~~~~~~---~----~~~~~~~G~~~  187 (193)
                      ++++.+++|+|++|++|...++.+- ..|++ ++++.++..   +    .+.+++.|+..
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v  586 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEV  586 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEE
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcE
Confidence            4678999999999999999888776 78994 888888732   2    23345567643

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=93.35  E-value=0.12  Score=39.54  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGS--SGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~--g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+++++|+|++  +++|..+++.+...|++|+++.++
T Consensus         7 ~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~   43 (297)
T 1d7o_A            7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeecc
Confidence            46789999998  999999999888899999998753

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=93.34  E-value=0.14  Score=40.32  Aligned_cols=45  Identities=13%  Similarity=0.075  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++.+++.++ +..+++|+
T Consensus       145 ~g~~vgIIG~-G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  189 (333)
T 2d0i_A          145 YGKKVGILGM-GAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKA  189 (333)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTE
T ss_pred             CcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCc
Confidence            4679999997 999999999999999999999988776 44444553

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.31  E-value=0.24  Score=37.79  Aligned_cols=42  Identities=24%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+.+++|+|+ |.+|.+.+..+...|++|++..++.++.+.+.
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~  169 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLA  169 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHT
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            4678999997 99999999999888999999999988766553

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=93.28  E-value=0.15  Score=40.57  Aligned_cols=46  Identities=17%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .|.++.|+|- |.+|...++.++.+|++|++..++. +.+.+.+.|+.
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~~~~~g~~  204 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAFGMNVLVWGREN-SKERARADGFA  204 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSHH-HHHHHHHTTCE
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEECCCC-CHHHHHhcCce
Confidence            3679999996 9999999999999999999999775 33445556653

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=93.25  E-value=0.45  Score=36.62  Aligned_cols=57  Identities=16%  Similarity=0.034  Sum_probs=40.6

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      |+........|.....--.|.+++|.|++..+|.-+.+++...|++|++..+..+.+
T Consensus       140 PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L  196 (288)
T 1b0a_A          140 PCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNL  196 (288)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCH
T ss_pred             CCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhH
Confidence            333333444443333234789999999866789999999999999999988766544

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=93.24  E-value=0.048  Score=45.25  Aligned_cols=38  Identities=16%  Similarity=0.259  Sum_probs=33.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      +..+|||+|++|.+|..++..+...|.+|+++++++++
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~  186 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNE  186 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSH
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCCh
Confidence            44689999999999999999988889999999998773

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=93.22  E-value=0.5  Score=36.48  Aligned_cols=56  Identities=13%  Similarity=0.240  Sum_probs=43.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++++|+..+ +|+.|.+++..++.+|.+++++..   +..+.+.++.+|+..++
T Consensus        54 ~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~  112 (303)
T 2v03_A           54 KRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELIL  112 (303)
T ss_dssp             HTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            345556777666655 699999999999999998887775   45688888999996554

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=93.16  E-value=0.44  Score=36.87  Aligned_cols=56  Identities=14%  Similarity=0.266  Sum_probs=43.0

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++++|+ .+.+|+.|.++...++.+|.+.+++..   +..+.+.++.+|+..++
T Consensus        58 ~~g~~~~g~~vv-~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~  116 (308)
T 2egu_A           58 KAGKLKPGDTIV-EPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVL  116 (308)
T ss_dssp             HTTCCCTTCEEE-EECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCEEE-EeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            344556666554 477899999999999999998777765   45688888999996554

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=93.16  E-value=0.15  Score=43.77  Aligned_cols=39  Identities=13%  Similarity=-0.008  Sum_probs=33.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~  177 (193)
                      .+.+|||+|++|.+|..++..+... |.+|++++++.++.
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~  353 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI  353 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTT
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhh
Confidence            4568999999999999999888887 88999999876543

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=93.15  E-value=0.71  Score=35.41  Aligned_cols=69  Identities=9%  Similarity=-0.015  Sum_probs=44.1

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      |+....+...+.....--.|.+++|.|++..+|..+.+++...  |++|++..+..+.+...- ..+|.+|.
T Consensus       139 PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~~~-~~ADIVI~  209 (281)
T 2c2x_A          139 PCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALT-RQADIVVA  209 (281)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHHHH-TTCSEEEE
T ss_pred             CChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHHHH-hhCCEEEE
Confidence            3333333333433322236889999998556899999999999  899998876654443221 24566654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=93.11  E-value=0.18  Score=40.19  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +.++.+|+|.|+ |.+|..+++.++.+|++|++++..++
T Consensus         9 ~~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            467899999997 99999999999999999999987544

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.08  E-value=0.21  Score=36.59  Aligned_cols=45  Identities=13%  Similarity=0.026  Sum_probs=37.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      ..+|.|+|+ |.+|...+..+...|.+|++.++++++.+.+.+.|+
T Consensus        28 ~~~I~iiG~-G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~   72 (215)
T 2vns_A           28 APKVGILGS-GDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAA   72 (215)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTS
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence            457999995 999999999888889999999999888777655453

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=92.97  E-value=0.14  Score=44.17  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+.+|||+|++|.+|..+++.+...|++|++++++..
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~   46 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN   46 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            3578999999999999999999989999999987543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=92.97  E-value=0.32  Score=37.67  Aligned_cols=45  Identities=11%  Similarity=-0.130  Sum_probs=40.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .+|.|+|. |.+|....+.+...|.+|++.++++++.+.+.+.|+.
T Consensus        22 ~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   66 (310)
T 3doj_A           22 MEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGAS   66 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCe
Confidence            57999997 9999999999999999999999999999988887763

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=92.91  E-value=0.48  Score=37.32  Aligned_cols=56  Identities=21%  Similarity=0.340  Sum_probs=43.4

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++++|+..+ +|+.|.+++..++.+|.+++++..   +..+.+.++.+|+..++
T Consensus        71 ~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  129 (343)
T 2pqm_A           71 KDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL  129 (343)
T ss_dssp             HHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            445567777666655 599999999999999998777765   45688888999996554

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=92.86  E-value=0.27  Score=38.28  Aligned_cols=46  Identities=11%  Similarity=-0.005  Sum_probs=40.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      ..+|.|+|. |.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus        31 ~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   76 (320)
T 4dll_A           31 ARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASLAALGAT   76 (320)
T ss_dssp             CSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCE
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCE
Confidence            458999997 9999999999999999999999999999888877763

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=92.86  E-value=0.19  Score=40.23  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.++++|+|.|+ |.+|..+++.++.+|++|++++.+.
T Consensus        10 ~~~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           10 IILPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            3568899999997 9999999999999999999998654

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=92.75  E-value=0.19  Score=38.98  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGG--SSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga--~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++||+|+  ++++|...+..+...|++|+++.++
T Consensus         8 ~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~   44 (319)
T 2ptg_A            8 RGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWP   44 (319)
T ss_dssp             TTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEecc
Confidence            4688999998  8999999999999999999998754

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.70  E-value=0.21  Score=40.59  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+-++++|+|.|+ |.+|..+++.++.+|++|++++..++
T Consensus        31 ~~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            3568999999997 99999999999999999999876543

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=92.60  E-value=0.58  Score=36.55  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=43.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++++|+. .++|+.|.++...++.+|.+++++..   +..+.+.++.+|+..++
T Consensus        66 ~~g~l~~~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  124 (325)
T 3dwg_A           66 ADGLLRPGATILE-PTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIF  124 (325)
T ss_dssp             HTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEE
T ss_pred             HcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            4456677777655 55699999999999999998777765   45678888899996554

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=92.56  E-value=0.51  Score=35.56  Aligned_cols=40  Identities=25%  Similarity=0.285  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+ +++|+|+ |.+|...+..+...|++|++..++.++.+.+
T Consensus       116 ~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l  155 (263)
T 2d5c_A          116 KG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALAL  155 (263)
T ss_dssp             CS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred             CC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45 8999997 9999999999999999999999988776544

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=92.54  E-value=0.12  Score=43.37  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+.+++|+|+ |++|.+++..+...|++|+++.++.++.+.+.
T Consensus       363 ~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la  404 (523)
T 2o7s_A          363 ASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELA  404 (523)
T ss_dssp             ---CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            3568999998 89999999999999999999999988776553

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=92.41  E-value=0.37  Score=34.81  Aligned_cols=47  Identities=21%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ |. |..++.+++. +++|+.++.+++..+.+++
T Consensus        49 ~~l~~~~~~~vLDlGc-G~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           49 AALAPRRGELLWDIGG-GS-GSVSVEWCLA-GGRAITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHCCCTTCEEEEETC-TT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEecC-CC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence            4456788999999986 54 8888899888 8999999999998887764

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=92.39  E-value=0.53  Score=36.54  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=42.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++++|+. .++|+.|.+++..++.+|.+++++..   +..+...++.+|+..++
T Consensus        55 ~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~  113 (316)
T 1y7l_A           55 KDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVL  113 (316)
T ss_dssp             HTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            3445566665555 55699999999999999998777765   46688888999996554

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=92.37  E-value=0.31  Score=39.27  Aligned_cols=38  Identities=21%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             CCCCeEEEEcCCchHHHH-HHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTF-AIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~-~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..++++||+|+++++|++ ++.+|...|+.++++....+
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~   86 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKA   86 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCc
Confidence            457899999999999987 45666567999888876543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=92.27  E-value=0.41  Score=34.24  Aligned_cols=95  Identities=8%  Similarity=0.090  Sum_probs=53.3

Q ss_pred             CCCCCEEEEEccCceeeeEEe-ecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHH
Q 029425           79 WKVGDQVCALLGGGGYAEKVA-VPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAI  157 (193)
Q Consensus        79 ~~~G~~V~~~~~~g~~~~~~~-~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i  157 (193)
                      ++.|+.+...+.   |.+|.. .+....+.++..+.+....  ..........+..  .++++++||-.|+ |. |..+.
T Consensus         6 ~~~~~~~~~~p~---w~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~l~~--~~~~~~~vLDiG~-G~-G~~~~   76 (205)
T 3grz_A            6 INLSRHLAIVPE---WEDYQPVFKDQEIIRLDPGLAFGTGN--HQTTQLAMLGIER--AMVKPLTVADVGT-GS-GILAI   76 (205)
T ss_dssp             EEEETTEEEEET---TCCCCCSSTTCEEEEESCC-----CC--HHHHHHHHHHHHH--HCSSCCEEEEETC-TT-SHHHH
T ss_pred             EEECCcEEEecc---ccccccCCCCceeEEecCCcccCCCC--CccHHHHHHHHHH--hccCCCEEEEECC-CC-CHHHH
Confidence            344565544433   556555 5556667776665443321  1111111112211  2568899999986 54 77777


Q ss_pred             HHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          158 QMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       158 ~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      .+++.-..+++.++.+++..+.+++
T Consensus        77 ~l~~~~~~~v~~vD~s~~~~~~a~~  101 (205)
T 3grz_A           77 AAHKLGAKSVLATDISDESMTAAEE  101 (205)
T ss_dssp             HHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHHHCCCCEEEEEECCHHHHHHHHH
Confidence            7776433499999999988877765

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=92.17  E-value=0.23  Score=39.40  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++..++.++. ..+++|+
T Consensus       167 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~  211 (347)
T 1mx3_A          167 RGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGL  211 (347)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCC
Confidence            4679999996 9999999999999999999998765542 2334554

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.09  E-value=0.34  Score=38.13  Aligned_cols=45  Identities=16%  Similarity=0.091  Sum_probs=37.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch-HHHHhhcCCc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR-FILCQPFNIR  186 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~-~~~~~~~G~~  186 (193)
                      .+|.|+|. |.+|.+.++.++..|.+|++..++.++ .+.+++.|+.
T Consensus        17 ~~I~IIG~-G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~   62 (338)
T 1np3_A           17 KKVAIIGY-GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK   62 (338)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCE
Confidence            47999997 999999999999999999999988766 6667777763

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=91.92  E-value=0.94  Score=37.01  Aligned_cols=56  Identities=13%  Similarity=0.213  Sum_probs=44.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++++|+. ..+|+.|.+++.+++.+|++++++..   +..+...++.+|+..++
T Consensus       154 ~~G~l~~g~tVV~-aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~  212 (435)
T 1jbq_A          154 RDGTLKPGDTIIE-PTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR  212 (435)
T ss_dssp             HHTCSCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence            4556677777655 45699999999999999999888775   45688888999997554

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=91.90  E-value=0.15  Score=39.65  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~  173 (193)
                      .+.+|||+||+|.+|..+++.+...|  .+|++..+.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~   59 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDAL   59 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecc
Confidence            45689999999999999999988888  678877754

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=91.67  E-value=0.35  Score=38.64  Aligned_cols=44  Identities=11%  Similarity=0.021  Sum_probs=36.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      |.++.|+|- |.+|...++.++.+|++|+...++. +.+.+.+.|+
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~  219 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENGV  219 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTTC
T ss_pred             CCEEEEecC-CcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcCe
Confidence            779999996 9999999999999999999999874 3344445554

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=91.58  E-value=0.42  Score=36.81  Aligned_cols=50  Identities=20%  Similarity=0.147  Sum_probs=41.3

Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      +.....++++++||-.|+ |. |..+..+++..|++|+.++.+++..+.+++
T Consensus        82 ~~~~~~~~~~~~vLDiGc-G~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~  131 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGC-GW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQ  131 (318)
T ss_dssp             HHTTSCCCTTCEEEEESC-TT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEcc-cc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            335567789999999996 54 888889998889999999999998887765

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=91.52  E-value=0.69  Score=36.19  Aligned_cols=35  Identities=17%  Similarity=0.129  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|.+++|.|++..+|..+++++...|++|++..++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            68899999984467999999999999999988765

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.40  E-value=0.38  Score=37.19  Aligned_cols=44  Identities=16%  Similarity=-0.074  Sum_probs=38.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+|.|+|+ |.+|...+..+...|.+|++.++++++.+.+.+.|+
T Consensus        31 ~~I~iIG~-G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~   74 (316)
T 2uyy_A           31 KKIGFLGL-GLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGA   74 (316)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTC
T ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCC
Confidence            57999997 999999998888889999999999998888777665

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=91.27  E-value=0.37  Score=37.25  Aligned_cols=45  Identities=20%  Similarity=0.047  Sum_probs=39.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      ..+|.|+|. |.+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus         9 ~~~IgiIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~   53 (306)
T 3l6d_A            9 EFDVSVIGL-GAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGA   53 (306)
T ss_dssp             SCSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC
Confidence            457999996 999999999999999999999999999888877675

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=91.23  E-value=1.4  Score=33.97  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=43.2

Q ss_pred             HhcCCCCCCe-EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGES-FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~-vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+++++. .+|...+|+.|.++...++.+|.+++++..   +..+.+.++.+|+..++
T Consensus        53 ~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~  113 (304)
T 1ve1_A           53 ERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVL  113 (304)
T ss_dssp             HTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence            3445566651 455577899999999999999998887765   45688888999996554

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=91.13  E-value=0.23  Score=39.00  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+...++.++
T Consensus       136 ~gktvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  172 (324)
T 3evt_A          136 TGQQLLIYGT-GQIGQSLAAKASALGMHVIGVNTTGHP  172 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             cCCeEEEECc-CHHHHHHHHHHHhCCCEEEEECCCcch
Confidence            3679999996 999999999999999999999987554

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=91.08  E-value=0.78  Score=35.75  Aligned_cols=49  Identities=12%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             CeEEEE-cCCchHHHHHHHHHHHCCCEEEEEeC----CcchHHHHhhcCCcEEe
Q 029425          141 ESFLVH-GGSSGIGTFAIQMGKCQGVRVFVTAG----LATRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~-ga~g~~G~~~i~~~~~~g~~v~~~~~----~~~~~~~~~~~G~~~~~  189 (193)
                      ++|+-. +++|+.|.++...++.+|.+.+++.+    +..|.+.++.+|+..++
T Consensus        71 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~  124 (325)
T 1j0a_A           71 DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRV  124 (325)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEE
T ss_pred             CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEE
Confidence            455555 37899999999999999998777764    45688889999997655

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=91.03  E-value=0.44  Score=37.74  Aligned_cols=36  Identities=14%  Similarity=0.169  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      |.++.|+|- |.+|...++.++.+|++|+...++..+
T Consensus       173 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  208 (345)
T 4g2n_A          173 GRRLGIFGM-GRIGRAIATRARGFGLAIHYHNRTRLS  208 (345)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             CCEEEEEEe-ChhHHHHHHHHHHCCCEEEEECCCCcc
Confidence            679999996 999999999999999999999987643

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=91.01  E-value=0.85  Score=35.98  Aligned_cols=51  Identities=12%  Similarity=0.221  Sum_probs=40.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC----CcchHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG----LATRFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~----~~~~~~~~~~~G~~~~~  189 (193)
                      .|...+|...+|+.|.++...++.+|.+++++..    +..+.+.++.+|+..++
T Consensus        77 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~  131 (352)
T 2zsj_A           77 AGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLA  131 (352)
T ss_dssp             TTCCEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEE
Confidence            3445677778899999999999999998777664    34577888999996554

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=91.00  E-value=0.6  Score=36.55  Aligned_cols=49  Identities=8%  Similarity=0.087  Sum_probs=37.5

Q ss_pred             CeEEEE-cCCchHHHHHHHHHHHCCCEEEEEeCCcc-----------hHHHHhhcCCcEEe
Q 029425          141 ESFLVH-GGSSGIGTFAIQMGKCQGVRVFVTAGLAT-----------RFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~-ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-----------~~~~~~~~G~~~~~  189 (193)
                      ++|+-. +++|+.|.++..+++.+|.+.+++.....           +...++.+|+..++
T Consensus        68 ~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~  128 (338)
T 1tzj_A           68 DTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRL  128 (338)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEE
T ss_pred             CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEE
Confidence            344433 57799999999999999998777765322           88889999997554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=90.98  E-value=0.91  Score=33.76  Aligned_cols=37  Identities=16%  Similarity=0.081  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+.+|.|+|+ |.+|...++.+...|.+|++..+++++
T Consensus        18 ~~~kIgiIG~-G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           18 QGMKIAVLGT-GTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            4578999996 999999999999999999999999887

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=90.93  E-value=0.59  Score=35.73  Aligned_cols=50  Identities=16%  Similarity=0.108  Sum_probs=41.7

Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      +.....++++++||-.|+ | .|..+..+++..|++|+.++.+++..+.+++
T Consensus        64 ~~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGC-G-WGSTMRHAVAEYDVNVIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HHHTTCCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeec-c-CcHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            335567889999999985 4 4899999999988999999999998877764

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=90.91  E-value=0.29  Score=38.46  Aligned_cols=37  Identities=22%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|. |.+|..+++.++.+|++|++..++.++
T Consensus       145 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~  181 (331)
T 1xdw_A          145 RNCTVGVVGL-GRIGRVAAQIFHGMGATVIGEDVFEIK  181 (331)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCccH
Confidence            3678999996 999999999999999999999887654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=90.90  E-value=0.48  Score=36.41  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=33.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+
T Consensus        16 ~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            57999998 9999987777777899999999998877653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.87  E-value=0.4  Score=35.15  Aligned_cols=46  Identities=11%  Similarity=0.194  Sum_probs=37.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEE-EeCCcchHHHHh-hcCCcE
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFV-TAGLATRFILCQ-PFNIRV  187 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~-~~~~~~~~~~~~-~~G~~~  187 (193)
                      .+|.|+|+ |.+|.+.++.+...|.+|++ ..+++++.+.+. ++|...
T Consensus        24 mkI~IIG~-G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~   71 (220)
T 4huj_A           24 TTYAIIGA-GAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASV   71 (220)
T ss_dssp             CCEEEEEC-HHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCc
Confidence            47999996 99999999988888999988 888888887754 456543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.86  E-value=0.59  Score=37.15  Aligned_cols=46  Identities=11%  Similarity=-0.047  Sum_probs=40.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      ..+|.|+|. |.+|...+..+...|.+|++.++++++.+.+.+.|+.
T Consensus        22 ~mkIgiIGl-G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~   67 (358)
T 4e21_A           22 SMQIGMIGL-GRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIA   67 (358)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCB
T ss_pred             CCEEEEECc-hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCE
Confidence            357999996 9999999999999999999999999999888877753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.83  E-value=0.82  Score=36.72  Aligned_cols=48  Identities=15%  Similarity=0.103  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Q 029425          125 CTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGL  173 (193)
Q Consensus       125 ~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~  173 (193)
                      ...+.++...+.--+..+|+|.|+ |..|..+++++..+|+ ++++++++
T Consensus       177 Aal~~A~~i~g~~l~~~kVVv~GA-GaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          177 AAFLNALKLTEKKIEEVKVVVNGI-GAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             HHHHHHHHHHTCCTTTCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECC
Confidence            344445544443235679999998 9999999999999999 89999987

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=90.73  E-value=0.35  Score=38.03  Aligned_cols=38  Identities=18%  Similarity=0.133  Sum_probs=33.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++..++.++.
T Consensus       145 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCcchh
Confidence            3679999996 9999999999999999999999877653

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=90.71  E-value=0.42  Score=37.20  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++..++.++
T Consensus       143 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~  179 (311)
T 2cuk_A          143 QGLTLGLVGM-GRIGQAVAKRALAFGMRVVYHARTPKP  179 (311)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence            4678999996 999999999999999999999987654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=90.57  E-value=0.69  Score=33.25  Aligned_cols=48  Identities=19%  Similarity=0.116  Sum_probs=39.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ | .|..+..+++..+  .+++.++.+++..+.+++
T Consensus        71 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIGT-G-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEECC-C-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            4557789999999996 5 5888999999876  799999999888877764

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=90.57  E-value=0.81  Score=36.09  Aligned_cols=50  Identities=10%  Similarity=0.090  Sum_probs=39.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC----CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG----LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~----~~~~~~~~~~~G~~~~~  189 (193)
                      +...+|...+|+.|.+++..++.+|.+++++..    +..+...++.+|+..++
T Consensus        76 g~~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~  129 (351)
T 3aey_A           76 GAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQ  129 (351)
T ss_dssp             TCSEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEE
Confidence            445677778899999999999999998777664    34578888999996554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=90.54  E-value=0.33  Score=38.17  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++..++.++
T Consensus       144 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~  180 (333)
T 1dxy_A          144 GQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMK  180 (333)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            4679999996 999999999999999999999987653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=90.52  E-value=0.31  Score=37.60  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|- |.+|...++.++.+|++|++..++.++
T Consensus       121 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  157 (290)
T 3gvx_A          121 YGKALGILGY-GGIGRRVAHLAKAFGMRVIAYTRSSVD  157 (290)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSCCC
T ss_pred             ecchheeecc-CchhHHHHHHHHhhCcEEEEEeccccc
Confidence            3679999996 999999999999999999999987654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=90.52  E-value=0.29  Score=37.63  Aligned_cols=44  Identities=9%  Similarity=-0.222  Sum_probs=39.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+|.|+|. |.+|....+.+...|.+|++.++++++.+.+.+.|+
T Consensus        16 ~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~   59 (296)
T 3qha_A           16 LKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGA   59 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTC
T ss_pred             CeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCC
Confidence            47999996 999999999998899999999999999988887776

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=90.51  E-value=0.83  Score=37.36  Aligned_cols=48  Identities=17%  Similarity=0.105  Sum_probs=38.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..++.+++|+.|+++...++.+|++++++..   +..|...++.+|+..++
T Consensus       161 ~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~  211 (442)
T 3ss7_X          161 YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVE  211 (442)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            3566677899999999999999998777765   34577888899996554

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=90.50  E-value=0.92  Score=33.46  Aligned_cols=48  Identities=13%  Similarity=0.106  Sum_probs=39.7

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++.+||=.|+ |. |..+..+++..+++++.++.+++.++.+++
T Consensus        30 ~~~~~~~~~~VLDiGc-G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           30 RVLRMKPGTRILDLGS-GS-GEMLCTWARDHGITGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHTCCCTTCEEEEETC-TT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECC-CC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence            4567889999999985 44 888889999889999999999988777754

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=90.45  E-value=1.6  Score=35.47  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEE-EEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVF-VTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~-~~~~  172 (193)
                      .|.++.|.|. |.+|..+++++...|++|+ +++.
T Consensus       217 ~gk~vaVqG~-GnVG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          217 RGARVVVQGL-GQVGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             cCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEEcC
Confidence            5789999996 9999999999999999999 5554

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.45  E-value=0.47  Score=37.08  Aligned_cols=45  Identities=24%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN  184 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G  184 (193)
                      -..+|.|+|+ |.+|.+....+...|.+|++..+++++.+.+++.|
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g   57 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHENGEEVILWARRKEIVDLINVSH   57 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHS
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhC
Confidence            3467999997 99999988888888999999999999888887665

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=90.40  E-value=0.75  Score=36.10  Aligned_cols=48  Identities=15%  Similarity=0.157  Sum_probs=37.7

Q ss_pred             eEEEE--cCCchHHHHHHHHHHHCCCEEEEEeCC--------cc------hHHHHhhcCCcEEe
Q 029425          142 SFLVH--GGSSGIGTFAIQMGKCQGVRVFVTAGL--------AT------RFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~--ga~g~~G~~~i~~~~~~g~~v~~~~~~--------~~------~~~~~~~~G~~~~~  189 (193)
                      ..+|.  +++|+.|.++..+++.+|++.+++.+.        ++      +...++.+|+..++
T Consensus        68 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~  131 (341)
T 1f2d_A           68 THLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV  131 (341)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEE
T ss_pred             CEEEEcCCcchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEE
Confidence            45556  678999999999999999987766642        22      88888999997655

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=90.39  E-value=0.99  Score=32.17  Aligned_cols=48  Identities=10%  Similarity=0.070  Sum_probs=39.7

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ | .|..++.+++.. +.+++.++.+++..+.+++
T Consensus        34 ~~l~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           34 SKLRLQDDLVMWDIGA-G-SASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHTTCCTTCEEEEETC-T-TCHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECC-C-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            4567889999999996 5 488899999885 3799999999998887764

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=90.38  E-value=1.2  Score=35.11  Aligned_cols=50  Identities=12%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +.++ +|..++|+.|.++...++.+|.+.+++..   +..+.+.++.+|+..++
T Consensus        75 ~~~~-vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  127 (346)
T 3l6b_A           75 KPKA-VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVY  127 (346)
T ss_dssp             CCSC-EEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             CCCE-EEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            4455 55556799999999999999998777664   34577888899997554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.36  E-value=0.5  Score=36.70  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=36.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      ..+|.|+|+ |.+|.+....+...|.+|.++ +++++.+.+++.|.
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~   62 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGL   62 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCe
Confidence            357999997 999999988888889999999 78888888876653

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=90.34  E-value=1.1  Score=35.57  Aligned_cols=51  Identities=8%  Similarity=0.093  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC----CcchHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG----LATRFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~----~~~~~~~~~~~G~~~~~  189 (193)
                      .+...+|...+|+.|.++...++.+|.+++++..    +..+...++.+|+..++
T Consensus        83 ~g~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~  137 (360)
T 2d1f_A           83 HGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQ  137 (360)
T ss_dssp             TTCSEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEE
Confidence            3445667778899999999999999999887764    34578888999996554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=90.02  E-value=0.53  Score=32.59  Aligned_cols=48  Identities=17%  Similarity=0.104  Sum_probs=39.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ |. |..+..+++.. +.+++.++.+++..+.+++
T Consensus        19 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           19 SALAPKPHETLWDIGG-GS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHCCCTTEEEEEEST-TT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHhcccCCCeEEEeCC-CC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            4456788999999986 54 89999999987 5699999999988877764

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=90.00  E-value=1.5  Score=36.54  Aligned_cols=56  Identities=11%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+++|++|+. +.+|+.|.+++..++.+|++.+++..   +..+...++.+|+..++
T Consensus       106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~  164 (527)
T 3pc3_A          106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIR  164 (527)
T ss_dssp             HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEE
Confidence            4566778887755 66799999999999999998777765   45678888899996554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=89.91  E-value=0.57  Score=34.42  Aligned_cols=48  Identities=17%  Similarity=0.213  Sum_probs=39.6

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ | .|..+..+++..+.+|+.++.+++..+.+++
T Consensus        85 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           85 EIANLKPGMNILEVGT-G-SGWNAALISEIVKTDVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHTCCTTCCEEEECC-T-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEeC-C-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence            4447789999999986 5 7888899998877899999999888777764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=89.90  E-value=1  Score=32.19  Aligned_cols=47  Identities=13%  Similarity=0.032  Sum_probs=39.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      .....+++++||-.|+ | .|..+..+++. +.+|+.++.+++..+.+++
T Consensus        71 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGT-G-SGYQTAILAHL-VQHVCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcC-C-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHH
Confidence            4557789999999996 5 58888888888 8899999999998877764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=89.72  E-value=1.2  Score=32.94  Aligned_cols=35  Identities=34%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.+|||.|+ |.+|...++.+...|++|+++....
T Consensus        30 ~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4788999998 9999999999999999999988654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=89.65  E-value=0.27  Score=36.25  Aligned_cols=41  Identities=10%  Similarity=0.044  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+...+++|.|+ |.+|...++.+...|. |+++++++++.+.
T Consensus         6 ~~~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~   46 (234)
T 2aef_A            6 VAKSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKV   46 (234)
T ss_dssp             ----CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHH
T ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHH
Confidence            345678999997 9999999999988888 8888887776543

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=89.59  E-value=0.98  Score=34.89  Aligned_cols=50  Identities=12%  Similarity=0.083  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +..+|+. .++|+.|.++...++.+|.+++++..   +..+...++.+|+..++
T Consensus        64 ~~~~vv~-~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  116 (311)
T 1ve5_A           64 NPKGLLA-VSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVD  116 (311)
T ss_dssp             SCCCEEE-ECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEEC
T ss_pred             CCCeEEE-ECCCcHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            4445544 55799999999999999999888776   45688899999986554

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=89.54  E-value=1.5  Score=33.75  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|.+++..++.+|.+.+++..   +..+.+.++.+|+..++
T Consensus        68 vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  116 (303)
T 1o58_A           68 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVL  116 (303)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             EEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            55677899999999999999998777765   45688888999986554

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=89.54  E-value=0.99  Score=33.36  Aligned_cols=50  Identities=10%  Similarity=0.031  Sum_probs=41.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN  184 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G  184 (193)
                      ....++++.+||-.|+ | .|..+..+++..+++|+.++.+++..+.+++..
T Consensus        49 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~   98 (266)
T 3ujc_A           49 SDIELNENSKVLDIGS-G-LGGGCMYINEKYGAHTHGIDICSNIVNMANERV   98 (266)
T ss_dssp             TTCCCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTC
T ss_pred             HhcCCCCCCEEEEECC-C-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh
Confidence            4556788999999985 4 788888999887999999999999988887643

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=89.52  E-value=0.66  Score=46.73  Aligned_cols=38  Identities=24%  Similarity=0.230  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCch-HHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSG-IGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~-~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|+++||+|++++ +|.+.++.+...|++|+++.++.++
T Consensus      2135 ~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~ 2173 (3089)
T 3zen_D         2135 XDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDD 2173 (3089)
T ss_dssp             CCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSH
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            6889999999999 9999999999999999999988766

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=89.51  E-value=0.46  Score=37.08  Aligned_cols=36  Identities=11%  Similarity=-0.013  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|+|. |.+|...++.++.+|++|+...++.+
T Consensus       138 ~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          138 EEFSVGIMGA-GVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            4789999996 99999999999999999999988765

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=89.45  E-value=0.65  Score=36.79  Aligned_cols=42  Identities=17%  Similarity=0.124  Sum_probs=34.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN  184 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G  184 (193)
                      -+|+|+|+ |.+|..+++.+.. ..+|.+.+++.++++.+++..
T Consensus        17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~   58 (365)
T 3abi_A           17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFA   58 (365)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTS
T ss_pred             cEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccC
Confidence            36999998 9999998888764 578999999888888776543

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=89.26  E-value=0.65  Score=44.62  Aligned_cols=39  Identities=26%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCCch-HHHHHHHHHHHCCCEEEEE-eCCcchH
Q 029425          139 PGESFLVHGGSSG-IGTFAIQMGKCQGVRVFVT-AGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~-~G~~~i~~~~~~g~~v~~~-~~~~~~~  177 (193)
                      .++++||+|++++ +|..++..+...|++|+++ .++.++.
T Consensus       674 ~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l  714 (1887)
T 2uv8_A          674 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQV  714 (1887)
T ss_dssp             TTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHH
Confidence            5789999999998 9999999998999999998 4665554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=89.23  E-value=0.46  Score=39.22  Aligned_cols=41  Identities=15%  Similarity=0.124  Sum_probs=34.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHh
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~  181 (193)
                      +.+++|+|+ |.+|..++..+... +.+|++..++.++.+.+.
T Consensus        23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la   64 (467)
T 2axq_A           23 GKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALA   64 (467)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHH
T ss_pred             CCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            568999997 99999998888877 679999999988776553

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=89.23  E-value=1.5  Score=35.95  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      -.|.++.|.|. |.+|..+++.+...|++|+.+..
T Consensus       233 l~Gk~vaVQG~-GnVG~~aa~~L~e~GakvVavsD  266 (450)
T 4fcc_A          233 FEGMRVSVSGS-GNVAQYAIEKAMEFGARVITASD  266 (450)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCCEEEEeCC-ChHHHHHHHHHHhcCCeEEEEec
Confidence            35889999996 99999999999999999987764

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=89.19  E-value=1.1  Score=36.02  Aligned_cols=47  Identities=6%  Similarity=-0.026  Sum_probs=38.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---cchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL---ATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~---~~~~~~~~~~G~~~~~  189 (193)
                      .+|.+++|+.|.++...++.+|++.+++...   ..+.+.++.+|+..++
T Consensus       114 ~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~  163 (398)
T 4d9i_A          114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIV  163 (398)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEE
Confidence            5666888999999999999999998877753   4577888899996554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=89.16  E-value=0.95  Score=44.95  Aligned_cols=39  Identities=26%  Similarity=0.484  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcch
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATR  176 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~  176 (193)
                      +++++++|+|++|++|...++.+...|++ |+++.++..+
T Consensus      1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~ 1921 (2512)
T 2vz8_A         1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIR 1921 (2512)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcc
Confidence            56789999999999999999999999997 7777776543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=89.02  E-value=0.61  Score=36.89  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+...++.++
T Consensus       147 ~gktvgIiGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~  183 (343)
T 2yq5_A          147 YNLTVGLIGV-GHIGSAVAEIFSAMGAKVIAYDVAYNP  183 (343)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCG
T ss_pred             CCCeEEEEec-CHHHHHHHHHHhhCCCEEEEECCChhh
Confidence            3779999996 999999999999999999999987654

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=88.77  E-value=0.72  Score=36.14  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+...++.+
T Consensus       139 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  174 (324)
T 3hg7_A          139 KGRTLLILGT-GSIGQHIAHTGKHFGMKVLGVSRSGR  174 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccceEEEEEE-CHHHHHHHHHHHhCCCEEEEEcCChH
Confidence            3789999996 99999999999999999999988653

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=88.75  E-value=1.1  Score=34.76  Aligned_cols=49  Identities=14%  Similarity=0.021  Sum_probs=38.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ...+|..++|+.|.++...++.+|.+++++..   +..+.+.++.+|+..++
T Consensus        54 ~~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~  105 (318)
T 2rkb_A           54 CRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQL  105 (318)
T ss_dssp             CCEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEE
Confidence            44555566799999999999999998887775   35577888899986554

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=88.59  E-value=1.1  Score=33.84  Aligned_cols=48  Identities=19%  Similarity=0.073  Sum_probs=39.7

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ...+++++.+||-.|+ | .|..+..+++..|++|+.++.+++..+.+++
T Consensus        58 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVGC-G-WGATMMRAVEKYDVNVVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             TTTTCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECC-c-ccHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            4556789999999985 4 4888889998789999999999998887765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=88.54  E-value=1.1  Score=32.96  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=40.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhhc
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~~  183 (193)
                      ....++++++||-.|+ |. |..+..+++..  +.+++.++.+++..+.+++.
T Consensus        90 ~~~~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           90 TLLDLAPGMRVLEAGT-GS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECC-Cc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            4567889999999986 54 88899999985  57999999999988887753

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=88.49  E-value=1.5  Score=36.55  Aligned_cols=49  Identities=10%  Similarity=-0.019  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCchHHHH-HHHHHHHCCCEEEEEeCCc--chHHHHhhcCCcEE
Q 029425          139 PGESFLVHGGSSGIGTF-AIQMGKCQGVRVFVTAGLA--TRFILCQPFNIRVF  188 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~-~i~~~~~~g~~v~~~~~~~--~~~~~~~~~G~~~~  188 (193)
                      +..++.++|. |+.|+. ++.+++..|++|.+++..+  ...+.+++.|+...
T Consensus        18 ~~~~i~~iGi-Gg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~   69 (524)
T 3hn7_A           18 QGMHIHILGI-CGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIE   69 (524)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEE
T ss_pred             cCCEEEEEEe-cHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEE
Confidence            3567999997 999997 5888899999999999864  34567777787544

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.42  E-value=0.6  Score=37.05  Aligned_cols=43  Identities=14%  Similarity=0.015  Sum_probs=37.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN  184 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G  184 (193)
                      .+|.|+|+ |.+|.+....+...|.+|.+.++++++.+.+++.|
T Consensus        30 mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~   72 (356)
T 3k96_A           30 HPIAILGA-GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEG   72 (356)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHS
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC
Confidence            47999997 99999999988888999999999988888776644

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=88.37  E-value=0.75  Score=34.47  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLA  174 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~  174 (193)
                      +.+|+|.|+ |++|..+++.+...|. ++.++++..
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            468999997 9999999999999998 788888766

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=88.36  E-value=0.54  Score=35.29  Aligned_cols=45  Identities=13%  Similarity=0.064  Sum_probs=36.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHhh-cCCc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILCQP-FNIR  186 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~-~G~~  186 (193)
                      -+|.|+|+ |.+|...++.+...|.+ |.+.++++++.+.+.+ +|+.
T Consensus        11 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~   57 (266)
T 3d1l_A           11 TPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAE   57 (266)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCE
T ss_pred             CeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCc
Confidence            46999997 99999988888888988 8899999888877654 4653

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=88.33  E-value=0.95  Score=35.96  Aligned_cols=51  Identities=18%  Similarity=0.098  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .+...+|..++|+.|.++...++.+|.+++++..   +..+.+.++.+|+..++
T Consensus        91 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~  144 (364)
T 4h27_A           91 QGCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKV  144 (364)
T ss_dssp             TTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEE
T ss_pred             cCCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            3444556666799999999999999998777765   34577888889996554

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=88.33  E-value=1.1  Score=35.60  Aligned_cols=35  Identities=20%  Similarity=0.037  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .-.|+|+|+ |..|+++...+...|.+|.++.+.+.
T Consensus        23 ~~dV~IVGa-G~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           23 HMKAIVIGA-GIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            347899998 99999999999999999999998654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=88.32  E-value=0.84  Score=35.34  Aligned_cols=36  Identities=25%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|.|. |.+|...++.++.+|++|++..++.+
T Consensus       123 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~dr~~~  158 (303)
T 1qp8_A          123 QGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPK  158 (303)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            4678999996 99999999999999999999987654

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=88.14  E-value=0.88  Score=43.69  Aligned_cols=39  Identities=28%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCch-HHHHHHHHHHHCCCEEEEEe-CCcchH
Q 029425          139 PGESFLVHGGSSG-IGTFAIQMGKCQGVRVFVTA-GLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~-~G~~~i~~~~~~g~~v~~~~-~~~~~~  177 (193)
                      .++++||+|++++ +|..++..+...|++|+++. ++.++.
T Consensus       651 ~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l  691 (1878)
T 2uv9_A          651 QGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQV  691 (1878)
T ss_dssp             TTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHH
Confidence            5789999999998 99999999989999999885 544443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=88.10  E-value=0.81  Score=36.11  Aligned_cols=37  Identities=19%  Similarity=0.094  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|. |.+|...++.++.+|++|+...++.++
T Consensus       170 ~gktiGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  206 (340)
T 4dgs_A          170 KGKRIGVLGL-GQIGRALASRAEAFGMSVRYWNRSTLS  206 (340)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCT
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCccc
Confidence            3679999997 999999999999999999999987653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=88.09  E-value=0.89  Score=35.07  Aligned_cols=44  Identities=9%  Similarity=-0.073  Sum_probs=36.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      +-.++|.|+|+ |.+|...++.+. .|.+|++.++++++.+.+.+.
T Consensus        10 ~~~~~V~vIG~-G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           10 HHHMKVFVIGA-GLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH
T ss_pred             cCCCeEEEEee-CHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH
Confidence            34578999997 999998888777 899999999999988877654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=88.08  E-value=1.1  Score=36.10  Aligned_cols=37  Identities=27%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|..+++|.|+ |.++..++++++.+|++|++++..++
T Consensus       202 ~P~~rL~IfGA-Ghva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          202 APRPRMLVFGA-IDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             CCCCEEEEECC-STHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCchh
Confidence            36678999998 99999999999999999999986554

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=88.03  E-value=0.8  Score=36.48  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|..+++|.|+ |.++.+++++++.+|++|++++..++.
T Consensus       197 ~p~~~L~I~Ga-Ghva~aLa~la~~lgf~V~v~D~R~~~  234 (362)
T 3on5_A          197 SPKERLIIFGA-GPDVPPLVTFASNVGFYTVVTDWRPNQ  234 (362)
T ss_dssp             CCCEEEEEECC-STTHHHHHHHHHHHTEEEEEEESCGGG
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEECCCccc
Confidence            46678999998 999999999999999999999876653

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=88.00  E-value=0.69  Score=37.22  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA  171 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~  171 (193)
                      -++.+|+|.|+ |.+|..+++.++.+|+++++++
T Consensus        22 m~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           22 WNSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE
Confidence            46789999997 9999999999999999999988

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=87.98  E-value=0.66  Score=36.50  Aligned_cols=37  Identities=11%  Similarity=0.048  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .|.++.|+|. |.+|...++.++.+|++|++..++.++
T Consensus       163 ~g~~vgIIG~-G~iG~~vA~~l~~~G~~V~~~dr~~~~  199 (333)
T 3ba1_A          163 SGKRVGIIGL-GRIGLAVAERAEAFDCPISYFSRSKKP  199 (333)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCCEEEECSSCCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCchh
Confidence            4678999997 999999999999999999999987654

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=87.90  E-value=1.3  Score=35.21  Aligned_cols=50  Identities=14%  Similarity=0.072  Sum_probs=39.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +...+|...+|+.|.+++..++.+|.+++++..   +..+.+.++.+|+..++
T Consensus        92 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  144 (372)
T 1p5j_A           92 GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKV  144 (372)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            344555566699999999999999998887775   45678888899996554

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=87.90  E-value=1.2  Score=34.55  Aligned_cols=47  Identities=9%  Similarity=0.019  Sum_probs=37.7

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      .+|...+|+.|.++...++.+|.+.+++.+   +..+.+.++.+|+..++
T Consensus        76 ~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  125 (323)
T 1v71_A           76 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIM  125 (323)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEE
T ss_pred             eEEEeCCCcHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEE
Confidence            455566799999999999999998777765   45678888999997554

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=87.82  E-value=0.56  Score=36.58  Aligned_cols=46  Identities=9%  Similarity=-0.033  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      ..++++|.|. |.+|...++.+...|. |+++++++++.+ +++.|...
T Consensus       114 ~~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~  159 (336)
T 1lnq_A          114 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANF  159 (336)
T ss_dssp             --CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEE
T ss_pred             ccCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEE
Confidence            3568999997 9999999999988898 999999998888 87777643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=87.52  E-value=0.99  Score=34.91  Aligned_cols=45  Identities=4%  Similarity=-0.100  Sum_probs=38.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC--cchHHHHhhcCCc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGL--ATRFILCQPFNIR  186 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~--~~~~~~~~~~G~~  186 (193)
                      .+|.|+|. |.+|...++.+...|. +|++.+++  +++.+.+++.|+.
T Consensus        25 ~~I~iIG~-G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~   72 (312)
T 3qsg_A           25 MKLGFIGF-GEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVS   72 (312)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCE
Confidence            57999997 9999999888888899 99999996  5777888777763

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=87.32  E-value=2.5  Score=30.51  Aligned_cols=45  Identities=16%  Similarity=0.146  Sum_probs=37.5

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCC------CEEEEEeCCcchHHHHhh
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQG------VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g------~~v~~~~~~~~~~~~~~~  182 (193)
                      .++++++||-.|+ |. |..+..+++..+      .+|+.++.+++..+.+++
T Consensus        77 ~~~~~~~VLdiG~-G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~  127 (227)
T 2pbf_A           77 VLKPGSRAIDVGS-GS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE  127 (227)
T ss_dssp             TSCTTCEEEEESC-TT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECC-CC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHH
Confidence            5788999999986 54 888889998876      699999999988877764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=87.31  E-value=0.58  Score=36.98  Aligned_cols=41  Identities=17%  Similarity=0.020  Sum_probs=35.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      +|.|+|+ |.+|...+..+...|.+|+++++++++.+.+++.
T Consensus        17 kI~iIG~-G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~   57 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK   57 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence            7999997 9999998888887888999999998888777654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=87.25  E-value=1.6  Score=30.21  Aligned_cols=47  Identities=9%  Similarity=0.068  Sum_probs=38.0

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....+.++++||-.|+ |. |..+..+++.. .+++.++.+++..+.+++
T Consensus        27 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           27 CLAEPGKNDVAVDVGC-GT-GGVTLELAGRV-RRVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHCCCTTCEEEEESC-TT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECC-CC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHH
Confidence            4456788999999986 55 88888888876 899999999888877764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=87.20  E-value=2  Score=34.58  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=35.5

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Q 029425          126 TVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGL  173 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~  173 (193)
                      .-+.++...+.--+..+|+|.|+ |..|..+++++..+|+ +|++++++
T Consensus       174 all~al~l~g~~l~d~kVVi~GA-GaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          174 AIFNSLKLLKKSLDEVSIVVNGG-GSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             HHHHHHHTTTCCTTSCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHhCCCCCccEEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence            33445543333234568999998 9999999999999999 89999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=87.09  E-value=0.97  Score=35.13  Aligned_cols=44  Identities=7%  Similarity=0.039  Sum_probs=36.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCC----CEEEEEeCCcc--hHHHHhhcCCc
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQG----VRVFVTAGLAT--RFILCQPFNIR  186 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g----~~v~~~~~~~~--~~~~~~~~G~~  186 (193)
                      +|.|+|+ |.+|...+..+...|    .+|++..++++  +.+.+++.|+.
T Consensus        24 kI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~   73 (322)
T 2izz_A           24 SVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVK   73 (322)
T ss_dssp             CEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCE
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCE
Confidence            6999997 999999888888888    68999998876  77777777763

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=87.03  E-value=0.82  Score=34.14  Aligned_cols=46  Identities=9%  Similarity=0.018  Sum_probs=39.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhhcCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .++.+||-.|+ |. |..+..+++.. +.+++.++.+++..+.+++.+.
T Consensus        84 ~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~  130 (269)
T 1p91_A           84 DKATAVLDIGC-GE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP  130 (269)
T ss_dssp             TTCCEEEEETC-TT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECC-CC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC
Confidence            67889999996 66 99999999986 7899999999999988887543

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=87.00  E-value=0.48  Score=44.59  Aligned_cols=39  Identities=26%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCch-HHHHHHHHHHHCCCEEEEE-eCCcchH
Q 029425          139 PGESFLVHGGSSG-IGTFAIQMGKCQGVRVFVT-AGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~-~G~~~i~~~~~~g~~v~~~-~~~~~~~  177 (193)
                      .++++||+|++++ +|.+.++.+...|++|+++ .++.++.
T Consensus       475 ~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~l  515 (1688)
T 2pff_A          475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQV  515 (1688)
T ss_dssp             CSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTT
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHH
Confidence            4688999999997 9999998888889999988 4555443

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=86.94  E-value=1.2  Score=36.85  Aligned_cols=50  Identities=8%  Similarity=0.012  Sum_probs=38.3

Q ss_pred             CCCCeEEEEcCCchHHHH-HHHHHHHCCCEEEEEeCCcc-hHHHHhhcCCcEE
Q 029425          138 SPGESFLVHGGSSGIGTF-AIQMGKCQGVRVFVTAGLAT-RFILCQPFNIRVF  188 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~-~i~~~~~~g~~v~~~~~~~~-~~~~~~~~G~~~~  188 (193)
                      +..++++++|. |..|+. ++++++..|++|.+++..+. ..+.+++.|+...
T Consensus        20 ~~~~~v~viGi-G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~   71 (494)
T 4hv4_A           20 RRVRHIHFVGI-GGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIY   71 (494)
T ss_dssp             --CCEEEEETT-TSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEE
T ss_pred             ccCCEEEEEEE-cHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEE
Confidence            34578999997 999996 79999999999999997544 3456777777443

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=86.80  E-value=1.2  Score=37.05  Aligned_cols=33  Identities=15%  Similarity=0.320  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .|.+|.|.|. |.+|..+++++..+|++|+.+..
T Consensus       243 ~g~tVaVQG~-GNVG~~aa~~L~e~GakVVavsD  275 (501)
T 3mw9_A          243 GDKTFVVQGF-GNVGLHSMRYLHRFGAKCITVGE  275 (501)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            5889999995 99999999999999999997653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=86.60  E-value=1.6  Score=32.17  Aligned_cols=48  Identities=17%  Similarity=0.142  Sum_probs=39.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ |. |..+..+++.+  +.+++.++.+++..+.+++
T Consensus        87 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  136 (255)
T 3mb5_A           87 AYAGISPGDFIVEAGV-GS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWE  136 (255)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEecC-Cc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH
Confidence            5567889999999986 54 88889999885  5799999999988887765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=86.59  E-value=2.9  Score=27.77  Aligned_cols=56  Identities=7%  Similarity=0.020  Sum_probs=39.5

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      .++.-+.+++.-.+-..-..++..++..+. ++++...+++..+.++++|++.++++
T Consensus        67 ~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p  123 (141)
T 3llv_A           67 DLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLV  123 (141)
T ss_dssp             CCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEH
T ss_pred             CcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEcChhHHHHHHHcCCCEEECH
Confidence            444445555533223344667778887764 78888888888999999999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=86.59  E-value=1.6  Score=36.01  Aligned_cols=44  Identities=11%  Similarity=0.023  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      .+-+|.|+|+ |.+|......+...|.+|+++++++++.+.+++-
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~   50 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGHDVFCLDVDQAKIDILNNG   50 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCC
Confidence            4568999997 9999998888888899999999999999888764

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=86.42  E-value=1.7  Score=34.07  Aligned_cols=49  Identities=12%  Similarity=0.126  Sum_probs=37.7

Q ss_pred             CeEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCc-----------chHHHHhhcCCcEEe
Q 029425          141 ESFLVHG-GSSGIGTFAIQMGKCQGVRVFVTAGLA-----------TRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~g-a~g~~G~~~i~~~~~~g~~v~~~~~~~-----------~~~~~~~~~G~~~~~  189 (193)
                      ++|+-.+ .+|+.|+++...++.+|.+.+++....           .|...++.+|+..++
T Consensus        82 ~~vv~~s~tsGN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~  142 (342)
T 4d9b_A           82 DTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM  142 (342)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEE
T ss_pred             CEEEEcCCcccHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEE
Confidence            4555555 379999999999999999877777521           377888999997554

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=86.41  E-value=0.9  Score=34.83  Aligned_cols=43  Identities=19%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-----C-CEEEEEeCCcchHHHHhh-cCC
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQ-----G-VRVFVTAGLATRFILCQP-FNI  185 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~-----g-~~v~~~~~~~~~~~~~~~-~G~  185 (193)
                      -+|.|+|+ |.+|.+....+...     | .+|+++.+ +++.+.+++ .|.
T Consensus         9 m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~   58 (317)
T 2qyt_A            9 IKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGL   58 (317)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCe
Confidence            37999997 99999887777666     8 89999998 777888877 675

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=86.30  E-value=3  Score=33.81  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~-~g~~v~~~~~~  173 (193)
                      .|.++.|.|. |.+|..++++++. +|++|+.+.++
T Consensus       211 ~gktvgI~G~-G~VG~~vA~~l~~~~G~kVv~~sD~  245 (419)
T 1gtm_A          211 KGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS  245 (419)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5889999996 9999999999999 99999988544

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=86.27  E-value=1.3  Score=37.03  Aligned_cols=45  Identities=20%  Similarity=0.121  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      .+.++.|.|. |.+|...++.++.+|++|++.+++.. .+.+.++|+
T Consensus       141 ~g~~vgIIG~-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~  185 (529)
T 1ygy_A          141 FGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVS-PARAAQLGI  185 (529)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC-HHHHHHHTC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCc
Confidence            4679999996 99999999999999999999988764 334555665

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=86.19  E-value=1.8  Score=35.19  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+.++.|.|. |.+|..+++++...|++|+.+..+
T Consensus       220 ~g~~vaVqG~-GnVG~~aa~~l~e~GakVVavsD~  253 (424)
T 3k92_A          220 QNARIIIQGF-GNAGSFLAKFMHDAGAKVIGISDA  253 (424)
T ss_dssp             GGCEEEEECC-SHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             ccCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999996 999999999999999998755544

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=86.18  E-value=1.9  Score=32.24  Aligned_cols=48  Identities=15%  Similarity=0.194  Sum_probs=39.6

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ | .|..+..+++..  +.+++.++.+++..+.+++
T Consensus        93 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           93 HEGDIFPGARVLEAGA-G-SGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            4567889999999986 5 788888999875  5699999999988877765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=86.17  E-value=2.4  Score=31.55  Aligned_cols=50  Identities=18%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      +.....++++.+||-.|+ | .|..+..+++..+++++.++.+++..+.+++
T Consensus        53 l~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~  102 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGC-G-IGKPAVRLATARDVRVTGISISRPQVNQANA  102 (273)
T ss_dssp             HHHHSCCCTTCEEEEESC-T-TSHHHHHHHHHSCCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCC-C-CCHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            335567789999999985 3 4888888998889999999999988777654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=86.13  E-value=1.4  Score=34.24  Aligned_cols=44  Identities=5%  Similarity=-0.178  Sum_probs=36.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCc-------chHHHHhhcCC
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLA-------TRFILCQPFNI  185 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~-------~~~~~~~~~G~  185 (193)
                      .+|.|+|. |.+|...++.+...| .+|++.++++       ++.+.+.+.|+
T Consensus        25 m~IgvIG~-G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~   76 (317)
T 4ezb_A           25 TTIAFIGF-GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV   76 (317)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC
T ss_pred             CeEEEECc-cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC
Confidence            57999996 999999999999999 8999999887       45555555565

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=86.06  E-value=1.3  Score=36.40  Aligned_cols=39  Identities=15%  Similarity=-0.002  Sum_probs=33.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+
T Consensus        38 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~D~~~~~~~~~   76 (463)
T 1zcj_A           38 SSVGVLGL-GTMGRGIAISFARVGISVVAVESDPKQLDAA   76 (463)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            47999997 9999998888888899999999998876654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=85.84  E-value=2.2  Score=30.86  Aligned_cols=35  Identities=14%  Similarity=0.104  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..+|.|+|+ |.+|.+.+..+...|.+|++.+++++
T Consensus        19 ~~~I~iiG~-G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGK-GNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            457999996 99999999998888999999987765

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=85.81  E-value=3.5  Score=33.67  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .|.+|.|.|. |.+|..+++++...|++|+.+..+
T Consensus       234 ~g~~vaVqGf-GnVG~~~a~~L~e~GakvVavsD~  267 (440)
T 3aog_A          234 EGARVAIQGF-GNVGNAAARAFHDHGARVVAVQDH  267 (440)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             cCCEEEEecc-CHHHHHHHHHHHHCCCEEEEEEcC
Confidence            5789999995 999999999999999999955544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=85.79  E-value=2.2  Score=28.51  Aligned_cols=57  Identities=5%  Similarity=-0.004  Sum_probs=38.8

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      .+++.-+.+++.-..-..-..++..++.+  +.++++...+++..+.++++|++.++++
T Consensus        67 a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~~~G~d~vi~p  125 (140)
T 3fwz_A           67 AHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMG  125 (140)
T ss_dssp             TTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHTTCSEEEEH
T ss_pred             cCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCCEEECc
Confidence            34444455555433233334455666664  4689999999999999999999999875

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=85.77  E-value=1.3  Score=37.16  Aligned_cols=49  Identities=12%  Similarity=0.063  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc-CCcEE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF-NIRVF  188 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~-G~~~~  188 (193)
                      ..+.++|.|. |.+|..+++.++..|.++++++.++++.+.+++. |...+
T Consensus       126 ~~~hviI~G~-g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i  175 (565)
T 4gx0_A          126 TRGHILIFGI-DPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVV  175 (565)
T ss_dssp             CCSCEEEESC-CHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEE
T ss_pred             cCCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEE
Confidence            3568999997 9999999999999999999999999999888876 87433

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=85.70  E-value=1.2  Score=35.01  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|.|- |.+|..+++.++.+|++|+...+...
T Consensus       140 ~g~tvGIiG~-G~IG~~va~~~~~fg~~v~~~d~~~~  175 (334)
T 3kb6_A          140 NRLTLGVIGT-GRIGSRVAMYGLAFGMKVLCYDVVKR  175 (334)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCcEEEEECc-chHHHHHHHhhcccCceeeecCCccc
Confidence            3679999996 99999999999999999999987544

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=85.62  E-value=1  Score=34.46  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .+.+|||.|+ |.+|...+..+...|++|+++....
T Consensus        12 ~~k~VLVVGg-G~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4789999998 9999999999999999999888644

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=85.56  E-value=2.9  Score=29.67  Aligned_cols=47  Identities=13%  Similarity=0.033  Sum_probs=38.6

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcC
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFN  184 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G  184 (193)
                      ..++++.+||-.|+ | .|..+..+++. +++++.++.+++..+.+++.|
T Consensus        42 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~   88 (218)
T 3ou2_A           42 RAGNIRGDVLELAS-G-TGYWTRHLSGL-ADRVTALDGSAEMIAEAGRHG   88 (218)
T ss_dssp             TTTTSCSEEEEESC-T-TSHHHHHHHHH-SSEEEEEESCHHHHHHHGGGC
T ss_pred             hcCCCCCeEEEECC-C-CCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhcC
Confidence            44778889999985 3 47788888877 889999999999999888765

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=85.45  E-value=2.2  Score=34.27  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEE
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVF  188 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~  188 (193)
                      +++++ .++.+++|+.|.+++..++.+|.+.+++..   +..+...++.+|+..+
T Consensus       142 ~~~g~-~Iv~assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~~~~~~GAeVv  195 (389)
T 1wkv_A          142 VEKGS-LVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVI  195 (389)
T ss_dssp             SCTTC-EEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             HhcCC-EEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            35664 555667799999999999999998777765   4456777788999755

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=85.34  E-value=2.3  Score=34.80  Aligned_cols=51  Identities=14%  Similarity=0.164  Sum_probs=39.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcch--------HHHHhhcCCcEEe
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATR--------FILCQPFNIRVFI  189 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~--------~~~~~~~G~~~~~  189 (193)
                      ..+++|+|+|+ |.+|.-++..+...|+ +|.++.+.+..        .+.+++.|.....
T Consensus       262 ~~gk~VvVIGg-G~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~  321 (456)
T 2vdc_G          262 AAGKHVVVLGG-GDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIW  321 (456)
T ss_dssp             CCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEEC
T ss_pred             cCCCEEEEECC-ChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEEe
Confidence            56889999997 9999999888888898 59988775432        4556777875443

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=85.27  E-value=2  Score=34.86  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ++.+|.|.|. |.+|..+++++...|++|+.+..+.
T Consensus       211 ~g~~vaVqG~-GnVG~~~a~~L~~~GakvVavsD~~  245 (421)
T 2yfq_A          211 EDAKIAVQGF-GNVGTFTVKNIERQGGKVCAIAEWD  245 (421)
T ss_dssp             GGSCEEEECC-SHHHHHHHHHHHHTTCCEEECCBCC
T ss_pred             cCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEEecC
Confidence            5789999995 9999999999999999999655554

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=85.22  E-value=0.71  Score=37.21  Aligned_cols=36  Identities=17%  Similarity=0.143  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV---RVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~---~v~~~~~~~  174 (193)
                      +..+|+|+|+.|.+|..++++++.+|+   .|.+.+.++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            356789999889999999999999998   898888765

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=85.11  E-value=2.3  Score=32.56  Aligned_cols=49  Identities=14%  Similarity=0.145  Sum_probs=35.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      .+|.|+|+.|.+|.+.+..++..|.+|+++.++++......--++|.+|
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVi   70 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVI   70 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEE
Confidence            4799999449999999999999999999998876532111113566655

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=84.92  E-value=0.98  Score=32.99  Aligned_cols=45  Identities=18%  Similarity=0.227  Sum_probs=37.0

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHhh
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQ-GVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~-g~~v~~~~~~~~~~~~~~~  182 (193)
                      ...++++||-.|+ | .|..+..+++.. +.+|+.++.+++..+.+++
T Consensus        51 ~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~   96 (233)
T 2gpy_A           51 KMAAPARILEIGT-A-IGYSAIRMAQALPEATIVSIERDERRYEEAHK   96 (233)
T ss_dssp             HHHCCSEEEEECC-T-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH
T ss_pred             hccCCCEEEEecC-C-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            3457889999986 5 788889999987 6799999999988877764

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=84.89  E-value=2  Score=34.04  Aligned_cols=46  Identities=4%  Similarity=0.003  Sum_probs=36.3

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeCC---cchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAGL---ATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~~---~~~~~~~~~~G~~~~~  189 (193)
                      +|..++|+.|.+++..++.+|.+++++...   ..+.+.++.+|+..++
T Consensus       111 vv~assGN~g~a~A~aa~~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~  159 (366)
T 3iau_A          111 VITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVL  159 (366)
T ss_dssp             EEEECSSHHHHHHHHHHHHTTCCEEEEECTTCCHHHHHHHHHTTCEEEE
T ss_pred             EEEeCCCHHHHHHHHHHHHhCCceEEEeCCCCCHHHHHHHHHCCCeEEE
Confidence            444556999999999999999988877763   4577888899986544

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=84.81  E-value=3.5  Score=33.50  Aligned_cols=34  Identities=15%  Similarity=0.364  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .+.++.|.|. |.+|..+++++...|++|+.+..+
T Consensus       209 ~gk~vaVqG~-GnVG~~aa~~L~e~GakVVavsD~  242 (421)
T 1v9l_A          209 EGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI  242 (421)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999996 999999999999999999965544

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=84.79  E-value=1.8  Score=34.70  Aligned_cols=49  Identities=20%  Similarity=0.108  Sum_probs=36.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeC-Ccc--hH-HHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAG-LAT--RF-ILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~-~~~--~~-~~~~~~G~~~~~  189 (193)
                      ++|.|.|++|.+|..++.+.+..  .++|+.... ..+  .+ +.++++....+.
T Consensus        22 k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~   76 (398)
T 2y1e_A           22 LRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIA   76 (398)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHHHHCCCCEE
T ss_pred             eEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHHHcCCCEEE
Confidence            57999999999999999999986  478888776 322  22 444567776554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=84.66  E-value=1.8  Score=30.98  Aligned_cols=45  Identities=16%  Similarity=0.013  Sum_probs=36.6

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ..++++.+||-.|+  +.|..+..+++. |++|+.++.+++.++.+++
T Consensus        18 l~~~~~~~vLD~GC--G~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~   62 (203)
T 1pjz_A           18 LNVVPGARVLVPLC--GKSQDMSWLSGQ-GYHVVGAELSEAAVERYFT   62 (203)
T ss_dssp             HCCCTTCEEEETTT--CCSHHHHHHHHH-CCEEEEEEECHHHHHHHHH
T ss_pred             cccCCCCEEEEeCC--CCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHH
Confidence            45678899999884  457777778776 8999999999998888875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=84.65  E-value=2.8  Score=29.13  Aligned_cols=46  Identities=9%  Similarity=-0.034  Sum_probs=37.3

Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ...++++++||=.|+  +.|..+..+++. +.+|+.++.+++..+.+++
T Consensus        17 ~~~~~~~~~vLDiGc--G~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~   62 (185)
T 3mti_A           17 AEVLDDESIVVDATM--GNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQ   62 (185)
T ss_dssp             HTTCCTTCEEEESCC--TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHH
T ss_pred             HHhCCCCCEEEEEcC--CCCHHHHHHHHh-CCEEEEEECCHHHHHHHHH
Confidence            446788999988875  448888888887 8899999999998877754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=84.50  E-value=1.4  Score=35.05  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ...|+|.|+ |..|++++..+...|.+|.++.+.+
T Consensus        26 ~~dV~IVGa-G~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGG-GPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            357999998 9999999999999999999999764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=84.40  E-value=2  Score=30.27  Aligned_cols=46  Identities=13%  Similarity=0.065  Sum_probs=36.7

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~  182 (193)
                      ..++++++||-.|+ |. |..+..+++..+  .+++.++.+++..+.+++
T Consensus        18 ~~~~~~~~vLDlGc-G~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~   65 (197)
T 3eey_A           18 MFVKEGDTVVDATC-GN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTK   65 (197)
T ss_dssp             HHCCTTCEEEESCC-TT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCC-CC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            35688999999885 44 888888888854  699999999988877754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=84.31  E-value=3  Score=30.07  Aligned_cols=45  Identities=16%  Similarity=0.123  Sum_probs=36.4

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~  182 (193)
                      .++++++||-.|+ | .|..+..+++..|  .+|+.++.+++..+.+++
T Consensus        74 ~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  120 (226)
T 1i1n_A           74 QLHEGAKALDVGS-G-SGILTACFARMVGCTGKVIGIDHIKELVDDSVN  120 (226)
T ss_dssp             TSCTTCEEEEETC-T-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEEcC-C-cCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            3788999999986 4 3888888888765  699999999988877753

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=84.29  E-value=1.7  Score=35.23  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+..++++
T Consensus       155 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~yd~~~  189 (416)
T 3k5p_A          155 RGKTLGIVGY-GNIGSQVGNLAESLGMTVRYYDTSD  189 (416)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCcc
Confidence            3679999996 9999999999999999999998754

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=84.28  E-value=3.2  Score=32.78  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      +..+|+|.|+ |..|...++.++.+|.+++++...+
T Consensus        10 ~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~   44 (391)
T 1kjq_A           10 AATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYA   44 (391)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCC
Confidence            4578999987 8899999999999999999888653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=84.10  E-value=2  Score=31.17  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=36.6

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCC-------CEEEEEeCCcchHHHHhh
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQG-------VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g-------~~v~~~~~~~~~~~~~~~  182 (193)
                      .++++++||-.|+ |. |..+..+++..+       .+|+.++.+++..+.+++
T Consensus        81 ~~~~~~~VLdiG~-G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  132 (227)
T 1r18_A           81 HLKPGARILDVGS-GS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA  132 (227)
T ss_dssp             TCCTTCEEEEESC-TT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECC-Cc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHH
Confidence            5788999999986 54 888888888766       499999999888777654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=84.01  E-value=4.1  Score=32.51  Aligned_cols=39  Identities=26%  Similarity=0.371  Sum_probs=33.6

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ..+.++++++|.|+ |.+|.-++..++..|.+|.++.+.+
T Consensus       140 ~~~~~~~~vvViGg-G~~g~E~A~~l~~~g~~Vtlv~~~~  178 (408)
T 2gqw_A          140 AGLRPQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQP  178 (408)
T ss_dssp             TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             HHhhcCCeEEEECC-CHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            34567899999997 9999999999999999999998765

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=83.90  E-value=1.8  Score=35.01  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|+|- |.+|...++.++.+|++|+..+++..
T Consensus       144 ~gktlGiIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~  179 (404)
T 1sc6_A          144 RGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENK  179 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            5779999996 99999999999999999999987543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=83.84  E-value=4  Score=28.50  Aligned_cols=39  Identities=21%  Similarity=0.131  Sum_probs=32.5

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCC----------CEEEEEeCCcc
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQG----------VRVFVTAGLAT  175 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g----------~~v~~~~~~~~  175 (193)
                      ..++++++||-.|+ |. |..+..+++..+          .+|+.++.++.
T Consensus        18 ~~~~~~~~vLDlGc-G~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           18 QILRPGLRVLDCGA-AP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CCCCTTCEEEEETC-CS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCCCCEEEEeCC-CC-CHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            44688999999996 66 999999999976          78999988764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=83.71  E-value=3.9  Score=29.48  Aligned_cols=47  Identities=13%  Similarity=0.097  Sum_probs=38.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++++++||-.|+ |. |..+..+++.. .+++.++.+++..+.+++
T Consensus        64 ~~~~~~~~~~vLdiG~-G~-G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~  110 (231)
T 1vbf_A           64 DELDLHKGQKVLEIGT-GI-GYYTALIAEIV-DKVVSVEINEKMYNYASK  110 (231)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHS-SEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcC-CC-CHHHHHHHHHc-CEEEEEeCCHHHHHHHHH
Confidence            4556788999999986 54 88888888874 899999999988888765

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=83.67  E-value=2.5  Score=34.60  Aligned_cols=55  Identities=13%  Similarity=0.011  Sum_probs=37.4

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHH-----CCCEEEEEeCCcchH---HHHhhcCCcEEec
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKC-----QGVRVFVTAGLATRF---ILCQPFNIRVFIG  190 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~-----~g~~v~~~~~~~~~~---~~~~~~G~~~~~~  190 (193)
                      .+.+-++|.|.|++|.+|..+..+.+.     -.++|+......+-.   +.++++....+.-
T Consensus        73 ~~~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~Nv~lL~eQ~~ef~P~~v~v  135 (488)
T 3au8_A           73 AIKKPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCI  135 (488)
T ss_dssp             ----CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSCHHHHHHHHHHHCCSEEEE
T ss_pred             hhhcceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCCHHHHHHHHHHcCCCEEEE
Confidence            334447899999999999999999998     357888777543322   4445677765553

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=83.31  E-value=2.6  Score=35.08  Aligned_cols=45  Identities=13%  Similarity=0.009  Sum_probs=36.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC------CCEEEEEeCCc-chHHHHhhcCCc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQ------GVRVFVTAGLA-TRFILCQPFNIR  186 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~------g~~v~~~~~~~-~~~~~~~~~G~~  186 (193)
                      .+|.|+|. |.+|.+.++-++..      |.+|++..++. ...+.+++.|+.
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~  106 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFT  106 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCC
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCE
Confidence            68999996 99999999999988      99988777654 455667777874

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=83.26  E-value=1.7  Score=34.18  Aligned_cols=35  Identities=23%  Similarity=0.065  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ...|+|.|+ |..|+++...+...|.+|.++.+.+.
T Consensus        11 ~~dVvIVGa-G~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGG-GFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            357999998 99999999999999999999987543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=83.19  E-value=2.7  Score=30.61  Aligned_cols=47  Identities=13%  Similarity=0.053  Sum_probs=37.9

Q ss_pred             hcCCCCCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHhh
Q 029425          134 TSHLSPGESFLVHGGSSGIGTFAIQMGKCQG-VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       134 ~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~  182 (193)
                      ...++++++||=.|+ |. |..+..+++..+ .+|+.++.+++..+.+++
T Consensus        69 ~~~~~~~~~VLDlGc-G~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~  116 (230)
T 1fbn_A           69 VMPIKRDSKILYLGA-SA-GTTPSHVADIADKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCCTTCEEEEESC-CS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred             ccCCCCCCEEEEEcc-cC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHH
Confidence            345678999999986 55 888889999876 699999999988777654

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=83.14  E-value=2.4  Score=34.91  Aligned_cols=33  Identities=15%  Similarity=0.272  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      +|.+|.|.|. |.+|..+++.+..+|++|+.+..
T Consensus       251 ~g~~vaVqG~-GnVG~~~a~~L~~~GakvVavsD  283 (470)
T 2bma_A          251 EKQTAVVSGS-GNVALYCVQKLLHLNVKVLTLSD  283 (470)
T ss_dssp             GGCEEEEECS-SHHHHHHHHHHHHTTCEECEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEEe
Confidence            5789999996 99999999999999999995554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=83.13  E-value=2.4  Score=34.60  Aligned_cols=41  Identities=7%  Similarity=-0.066  Sum_probs=34.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      -.+|.|+|. |.+|...+..+.. |.+|+++++++++.+.+++
T Consensus        36 ~mkIaVIGl-G~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~   76 (432)
T 3pid_A           36 FMKITISGT-GYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQ   76 (432)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHT
T ss_pred             CCEEEEECc-CHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhc
Confidence            358999997 9999988777766 9999999999998887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-27
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	3e-25
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	4e-25
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	7e-24
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	6e-23
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	9e-23
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	4e-22
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	5e-22
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	2e-21
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	2e-19
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	9e-19
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	5e-18
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	2e-17
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	4e-17
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	7e-17
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	9e-17
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	2e-15
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	6e-15
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-14
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	4e-14
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	4e-13
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	6e-13
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-12
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	6e-11
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	2e-09
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	9e-08
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	2e-07
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	4e-06
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	7e-06
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	1e-05
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	2e-05
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	5e-05
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	6e-05
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	8e-05
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	2e-04
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	3e-04
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	3e-04
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	3e-04
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	5e-04
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	6e-04
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	0.001
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	0.003
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	0.003

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 99.2 bits (246), Expect = 2e-27
 Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 10/153 (6%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            +A V+ +  +     +Q +    + + +VL++V  +++N  D L         K     
Sbjct: 4   FQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFV 63

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCA------LLGGGGYAEKVAVPAGQVLPVPSGVSL 114
           PG++ +G +  V     R++ GD+V A      +   GGY+E   +    ++P+P G+  
Sbjct: 64  PGIDLAGVV--VSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLE- 120

Query: 115 KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG 147
           + A               +   L  G + +   
Sbjct: 121 RIAQEISLAELPQALKRILRGELR-GRTVVRLA 152

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 93.4 bits (231), Expect = 3e-25
 Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           ++A+++ Q     +  +Q +++ ++ + +V + V  ++LN  D L   G     +     
Sbjct: 1   LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMI 60

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGG------GGYAEKVAVPAGQVLPVPSGVSL 114
           PG++ +GT+ +      R+  G +V     G      GG AE+  V    ++ +P G + 
Sbjct: 61  PGIDFAGTVRTSEDP--RFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAA 118

Query: 115 KDAAAFPEVACTVWSTVF 132
           K+ +              
Sbjct: 119 KEISLSEAPNFAEAIINN 136

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 93.8 bits (232), Expect = 4e-25
 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            +A+   +      + ++ +    +  D VLIKV  + +N  D L  K      +     
Sbjct: 4   FQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLI 63

Query: 61  PGLECSGTILSVGKNVSR----WKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKD 116
            G++ +GT++S                    +   GG +E  +VP   ++P+P  +SLK+
Sbjct: 64  LGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKE 123

Query: 117 AAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGI 152
           A     +                 +  L +     +
Sbjct: 124 AMVDQLLTIVDREVSLEE-TPGALKDILQNRIQGRV 158

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 7e-24
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 1   MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP 59
           M+A+ + + G PEVL+L+ ++  P  KD +VLIKV A  +N  +T  R G+Y        
Sbjct: 3   MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPY 62

Query: 60  YPGLECSGTILSVGKNVSRWKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDAA 118
            PG + +G I +VG N S +K GD+V       GGYAE        V  +P  +     +
Sbjct: 63  TPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGS 122

Query: 119 AFPEVACTVWSTVFMTSHLSPGESFLV 145
            +P           +    + G+  L+
Sbjct: 123 QYPLEKVAEAHENIIHGSGATGKMILL 149

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 88.4 bits (218), Expect = 6e-23
 Identities = 40/173 (23%), Positives = 61/173 (35%), Gaps = 32/173 (18%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+   G+P  L+++EV+ P     +VL+K+EA+ +   D    +G +P        
Sbjct: 6   MKAAVVHAYGAP--LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFI 63

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGG--------------------------- 93
           PG E  G + +VG  V+R K GD+V                                   
Sbjct: 64  PGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNG 123

Query: 94  -YAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLV 145
            YAE V      V  +P  V         +    +     M +    G   L 
Sbjct: 124 GYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQ--MRAGQIEGRIVLE 174

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 86.4 bits (213), Expect = 9e-23
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 15/145 (10%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ + G P  L+L ++ +P+ ++ EV+++VEA  LN AD L R G+Y         
Sbjct: 1   MKAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFI 58

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
           PG+E                 G +  AL+  GG AE+VAVP G +LP+P G  +      
Sbjct: 59  PGMEVV-----------GVVEGRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFP 107

Query: 121 PEVACTVWSTVFMTSHLSPGESFLV 145
              A   +  +    H   G+  + 
Sbjct: 108 FAEAEAAFRALLDRGHT--GKVVVR 130

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 85.5 bits (210), Expect = 4e-22
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP 61
             I   + G PEVLQ  E       ++E+ ++ +A  +N  DT  R G YPPP   S   
Sbjct: 2   TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLG 61

Query: 62  GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLK--DAAA 119
                                  V A    G Y+    + A +   +P+ + +   +   
Sbjct: 62  TEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQK 121

Query: 120 FPEVACTVWSTVFMTSHLSPGESFLV 145
           +P         +   S  + G S L+
Sbjct: 122 YPLKDAQRAHEIL-ESRATQGSSLLI 146

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 5e-22
 Identities = 34/193 (17%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA V  + G P  L ++E+E    K  EV IK+ ATA+   D     G+ P        
Sbjct: 7   CKAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV-I 63

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCAL-------------------------------- 88
            G   +G + SVG+ V++ K GD V  L                                
Sbjct: 64  LGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMP 123

Query: 89  ----------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132
                           +G   ++E   V    V  +   + + +          +     
Sbjct: 124 DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFE 183

Query: 133 MTSHLSPGESFLV 145
           +        + + 
Sbjct: 184 LMHSGKSIRTVVK 196

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 85.0 bits (209), Expect = 2e-21
 Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA V  +   P  L ++E+E      +E+ IK+ AT +   D L          G    
Sbjct: 9   CKAAVAWEANKP--LVIEEIEVDVPHANEIRIKIIATGVCHTD-LYHLFEGKHKDGFPVV 65

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCA--------------------------------- 87
            G E +G + SVG  V+ ++ G++V                                   
Sbjct: 66  LGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMS 125

Query: 88  ---------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132
                           LG   +++   V    V  +   V L +         +V   + 
Sbjct: 126 PKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAID 185

Query: 133 MTSHLSPGESFLV 145
           +  H     + L 
Sbjct: 186 LMKHGKCIRTVLS 198

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.5 bits (195), Expect = 2e-19
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 38/181 (20%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            + I I      +  +  + +     D ++ IK+EA  +  +D     G +   K     
Sbjct: 7   FEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMK-MPLV 65

Query: 61  PGLECSGTILSVG-KNVSRWKVGDQVCA-------------------------------- 87
            G E  G ++ +G K+ S  KVG +V                                  
Sbjct: 66  VGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPY 125

Query: 88  ---LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFL 144
               +  GGYA  V V    V+P+P  + ++            +  +     +    + +
Sbjct: 126 EDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLV 184

Query: 145 V 145
            
Sbjct: 185 G 185

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.3 bits (189), Expect = 9e-19
 Identities = 42/175 (24%), Positives = 61/175 (34%), Gaps = 34/175 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MKA V+ Q   P  L+++EVE P I   EVL++++A  +   D     G +P        
Sbjct: 1   MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLI 58

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCA----------------------------LLGGG 92
           PG E  G +  VG  V+  KVGD+V                                  G
Sbjct: 59  PGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDG 118

Query: 93  GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG 147
           GYAE     A  V+ +P    + +     ++         M      G   L   
Sbjct: 119 GYAEYCRAAADYVVKIPDNTII-EVQPLEKINEVFDR---MLKGQINGRVVLTLE 169

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 75.4 bits (184), Expect = 5e-18
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 11/178 (6%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           M+A+ + + G P  L LQE+  P+ K  +VLIKVEA  +  +D   R+G +   +     
Sbjct: 1   MRAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDL 58

Query: 61  -------PGLECSGTILSVGKNVSRWKVGDQV-CALLGGGGYAEKVAVPAGQVLPVPSGV 112
                   G E +G I  VG  V  +  GD V      G G      +    +   P  +
Sbjct: 59  GVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL 118

Query: 113 SLKDAAAFPE-VACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFV 169
            +    A+ E V    +  ++    + P  +  +    +      ++  K  G +V +
Sbjct: 119 GINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFKAIGRQVLI 176

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 74.0 bits (180), Expect = 2e-17
 Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 13/171 (7%)

Query: 1   MKAIVITQPGSP-EVLQLQ--EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP---- 53
            +A++ TQ G P +VL  Q  E++D  +  +EV++K   + +N +D  Q +G YP     
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 54  ----PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVP 109
                      P        +    +                     +          + 
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123

Query: 110 SGVSLKDAAAFPEVACTVWSTVF-MTSHLSPGESFLVHG-GSSGIGTFAIQ 158
                +  A       T   ++  +     P       G  +S  G   I 
Sbjct: 124 LPNPAQSKANGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 4e-17
 Identities = 30/182 (16%), Positives = 50/182 (27%), Gaps = 36/182 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             ++V+     P  L+L+    P+   +EVL+++ +  +  +D    +            
Sbjct: 8   NLSLVVH---GPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKP 64

Query: 61  --PGLECSGTILSVGKNVSRWKVGDQVCA------------------------LLGGG-- 92
              G E SGT+  VG +V   K GD+V                                 
Sbjct: 65  MVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD 124

Query: 93  --GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSS 150
                      A     +P  V       FP          F T     G   ++    S
Sbjct: 125 DGNLCRFYKHNAAFCYKLPDNVKPLVTHRFP---LEKALEAFETFKKGLGLKIMLKCDPS 181

Query: 151 GI 152
             
Sbjct: 182 DQ 183

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 73.0 bits (178), Expect = 7e-17
 Identities = 38/207 (18%), Positives = 58/207 (28%), Gaps = 65/207 (31%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA +  + GSP  L ++E+E    K  EV I+V AT +   D                 
Sbjct: 9   CKAAIAWKTGSP--LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLG 66

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV---------------------CALLGGGGY----- 94
              EC+G + SVG  V+ +K GD+V                     C  L    Y     
Sbjct: 67  H--ECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQ 124

Query: 95  --------------------------AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVW 128
                                     ++   V    +  V     L           ++ 
Sbjct: 125 ELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESIN 184

Query: 129 STVFMTSHLSPGESFLVHGGSSGIGTF 155
             +     +  G+S         I TF
Sbjct: 185 DAI---DLMKEGKSIRT------ILTF 202

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 72.3 bits (176), Expect = 9e-17
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 35/178 (19%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP- 59
           + A++         L+L++   P+ K+DEVL+++    +  +D    +            
Sbjct: 3   LSAVLY----KQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDP 58

Query: 60  -YPGLECSGTILSVGKNVSRWKVGDQVCALLGGG-------------------------- 92
              G E SGT++ VGKNV   K GD+V    G                            
Sbjct: 59  MVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPD 118

Query: 93  --GYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGG 148
               A      A     +P   ++K                F  +      +  V   
Sbjct: 119 DGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTV-DAFEAARKKADNTIKVMIS 175

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 69.1 bits (168), Expect = 2e-15
 Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 61/203 (30%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
            KA V+ +   P    ++EVE    K  EV IK+ AT + R+D     G+   P      
Sbjct: 9   CKAAVLWEEKKP--FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAG 66

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCA--------------------------------- 87
              E +G + S+G+ V+  + GD+V                                   
Sbjct: 67  H--EAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124

Query: 88  ---------------LLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF 132
                           LG   +++   V    V  + +  +L        +     +  F
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHV-LPFEKINEGF 183

Query: 133 MTSHLSPGESFLVHGGSSGIGTF 155
               L  GES         I TF
Sbjct: 184 --DLLRSGESIRT------ILTF 198

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 68.0 bits (165), Expect = 6e-15
 Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 53/208 (25%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKD-------DEVLIKVEATALNRADTLQRKGSYPP 53
            + +V    G    +++Q+++ P+++D         V++KV +T +  +D    +G    
Sbjct: 2   NRGVVYLGSG---KVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA 58

Query: 54  PKGASPYPGL--------------------------------ECSGTILSVGKNVSRWKV 81
             G      +                                 C      V   V+  + 
Sbjct: 59  QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARA 118

Query: 82  GDQVCALLGGG---GYAEKVAVPAGQ--VLPVPSGVSLKDAAAFPEVACTVWSTVFMTSH 136
           G     +  G    G AE V VP     +L +P      +     EV      ++   + 
Sbjct: 119 GGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAP 177

Query: 137 LSPGESFLVHGGSSGIGTFAIQMGKCQG 164
              GE       +     F I   K   
Sbjct: 178 RGYGE-----FDAGVPKKFVIDPHKTFS 200

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 65.7 bits (159), Expect = 3e-14
 Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           + A V    G+    +LQ ++  Q + DEVL+KV AT +   D + R   YP P  A   
Sbjct: 4   IIAAVTPCKGAD--FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLG 61

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAF 120
              E SG I ++G NV+  +VGD V    G  G   +             G +   A + 
Sbjct: 62  H--EGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSE 119

Query: 121 PEVACTVWSTVFMTSHLS-----------------------PGESFLVHGGSSGIGTFAI 157
              A        +  H                         P +  +       I   AI
Sbjct: 120 GNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAI 179

Query: 158 QMGKCQGVRVFVTAG 172
              K   ++  +   
Sbjct: 180 DSRKGITLKPIIKIA 194

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 65.1 bits (157), Expect = 4e-14
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 34/174 (19%)

Query: 2   KAIVITQPGSPEVLQLQEVEDPQIK-DDEVLIKVEATALNRADTLQRKG--SYPPPKGAS 58
           KA  + +   P  L++++V+ P+++   +V++++    +   D    +G           
Sbjct: 1   KAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLP 58

Query: 59  PYPGLECSGTILSVGKNVSRWKVGDQV---------------------CALLGGGGY--- 94
              G E  G I  V + V   + GD V                     C  L   G    
Sbjct: 59  YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNID 118

Query: 95  ---AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLV 145
              AE +      V+ +P  V ++      +    V   +        G + L+
Sbjct: 119 GGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL--EKGEVLGRAVLI 170

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 62.3 bits (150), Expect = 4e-13
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 40/165 (24%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           +KA+       P  L+  ++   +   ++V I++    +  +D  Q +  +         
Sbjct: 1   IKAVGAYSAKQP--LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVP 58

Query: 61  PGLECSGTILSVGKNVSRWKVGDQV-------------------------CALLGGG--- 92
              E  G +++VG  V ++  GD V                                   
Sbjct: 59  GH-EIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTP 117

Query: 93  --------GYAEKVAVPAGQVLPVP-SGVSLKDAAAFPEVACTVW 128
                   GY++++ V    VL +  + + +  A    E    + 
Sbjct: 118 DEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERML 162

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.2 bits (150), Expect = 6e-13
 Identities = 22/188 (11%), Positives = 47/188 (25%), Gaps = 52/188 (27%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
             A+V+ +   P  L  +E E   I    +L+++ +  +  +D    +G  P        
Sbjct: 5   AHAMVLEKFNQP--LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVC------------------------------ALLG 90
              E +G ++ V                                             + G
Sbjct: 63  GH-EGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG 121

Query: 91  -----------GGGYAEKVAV-PAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLS 138
                       G Y+  + + P   VL V   ++        E    +           
Sbjct: 122 INRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKIT--HRLPLKEANKAL-----ELMESR 174

Query: 139 PGESFLVH 146
                +++
Sbjct: 175 EALKVILY 182

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 61.1 bits (147), Expect = 2e-12
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 1  MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           KA V  +P  P  L L+ +     K  EV IK+ A+ +  +D+   K   P        
Sbjct: 9  CKAAVAWEPHKP--LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKF--PVI 64

Query: 61 PGLECSGTILSVGKNVSRWKVGDQVC 86
           G E  G + S+G  V+  K GD+V 
Sbjct: 65 LGHEAVGVVESIGAGVTCVKPGDKVI 90

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 56.5 bits (135), Expect = 6e-11
 Identities = 26/192 (13%), Positives = 49/192 (25%), Gaps = 48/192 (25%)

Query: 1   MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY 60
           MK   +        L   E E P     + +++  A +   +D           +  +  
Sbjct: 1   MKGFAMLGINK---LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDR-KNMI 56

Query: 61  PGLECSGTILSVGKNVSRWKVGDQVCALLG------------------------------ 90
            G E  G ++ VG  V  +K GD+V                                   
Sbjct: 57  LGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFK 116

Query: 91  GGGYAEKVAVPAGQ--VLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG- 147
            G + E   V      +  +P  V L             +  +         E+ L+   
Sbjct: 117 DGVFGEYFHVNDADMNLAILPKDVDLSKLVT---HVYHGFDHI--------EEALLLMKD 165

Query: 148 GSSGIGTFAIQM 159
               +    + +
Sbjct: 166 KPKDLIKAVVIL 177

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIG-TFAIQMGKCQGVRVFVT 170
           +++   A       T +  +     L+PG+ + +  G +     +A Q+GK         
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISV 60

Query: 171 AGLATRFILCQPFN 184
                         
Sbjct: 61  IRDRPNLDEVVASL 74

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (112), Expect = 9e-08
 Identities = 22/78 (28%), Positives = 32/78 (41%)

Query: 112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 171
           +S + AAA      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T 
Sbjct: 1   ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV 60

Query: 172 GLATRFILCQPFNIRVFI 189
           G A +            I
Sbjct: 61  GTAQKAQSALKAGAWQVI 78

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 116 DAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT 170
           +AA F     T W ++     LSPGE  L+H  + G+G  A+ + K  G R++ T
Sbjct: 2   EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTT 56

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (96), Expect = 4e-06
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 113 SLKDAAAFPEVACTVWSTVF---MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFV 169
             + A        T    V               +V G S G+G+ A+ +    G +V  
Sbjct: 2   DARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVA 61

Query: 170 TAG 172
            +G
Sbjct: 62  VSG 64

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 11 SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTIL 70
          +    +L+ VE P +K+ EVL++    +++       + +    K  +   G + +  + 
Sbjct: 18 TQSDFELKTVELPPLKNGEVLLEALFLSVD----PYMRIASKRLKEGAVMMGQQVARVVE 73

Query: 71 SVGKNVSRWKVGDQVCALLGGGGYA 95
          S     S +  G  V A  G   + 
Sbjct: 74 S---KNSAFPAGSIVLAQSGWTTHF 95

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 7/76 (9%), Positives = 20/76 (26%)

Query: 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173
           L+          T + +    + ++ G +  V G      +  +        R+      
Sbjct: 3   LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 62

Query: 174 ATRFILCQPFNIRVFI 189
             +F   +       +
Sbjct: 63  KDKFAKAKEVGATECV 78

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG 164
             K  AA      T +  +  ++ +  GES LVHG S G+G  A Q+ +  G
Sbjct: 2   DFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYG 53

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 118 AAFPEVACTVWSTVFMTSHLSPG--ESFLVHGGSSGIGTFAIQMGKCQG 164
            A      T    V    H+S G  ++ +V G +   G+ A Q+G   G
Sbjct: 7   GAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG 55

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 39.7 bits (91), Expect = 6e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 106 LPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV 165
           LP+   +        P    T +  +     +  GE+ LV   +  +G+   Q+ K +G 
Sbjct: 1   LPLSLALG---TIGMP--GLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC 55

Query: 166 RVFVTAG 172
           +V   AG
Sbjct: 56  KVVGAAG 62

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 8e-05
 Identities = 12/76 (15%), Positives = 18/76 (23%)

Query: 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173
           L           T +     T+ L PG    V G         +        R+      
Sbjct: 3   LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN 62

Query: 174 ATRFILCQPFNIRVFI 189
             +F   + F     I
Sbjct: 63  KDKFARAKEFGATECI 78

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ 163
           ++D     ++  T +      + + PG +  V  G+  +G  A    +  
Sbjct: 1   IRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVA-GAGPVGLAAAASARLL 48

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 110 SGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ 163
           S   L + A   +   T +  V   +      +++   G  G+G  A+Q+ K  
Sbjct: 2   SREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVM 55

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ 163
           +  +AA       T +  V   + L P ++ LV G   G+GT A+Q+ K  
Sbjct: 2   NAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAV 51

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVF 168
           + L++A    ++  T +      + +  G S +V  G   +G   I   K +G    
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVI-GIGAVGLMGIAGAKLRGAGRI 55

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 113 SLKDAAAFPEVACTVWSTVFM---TSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFV 169
           +LK+A A      T   ++               LV G + G+G+ A+ M   +G  V  
Sbjct: 2   TLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEA 61

Query: 170 TAGLA 174
           + G A
Sbjct: 62  STGKA 66

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH 146
           +S ++AAAFP    T +  +   +   PGE  LV 
Sbjct: 1   LSPEEAAAFPVSFLTAYLALK-RAQARPGEKVLVQ 34

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 11/76 (14%), Positives = 21/76 (27%)

Query: 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL 173
           L           T +     T+ + PG +  V G  +      +        R+      
Sbjct: 3   LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN 62

Query: 174 ATRFILCQPFNIRVFI 189
             +F   + F    F+
Sbjct: 63  PDKFEKAKVFGATDFV 78

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 172
           S ++AA       T +  + +T    PGE   ++G         +Q  K  G+ V     
Sbjct: 2   SFEEAAPIFCAGVTTYKALKVT-GAKPGEWVAIYGIGGLGHVA-VQYAKAMGLNVVAVDI 59

Query: 173 LATRFILCQ 181
              +  L +
Sbjct: 60  GDEKLELAK 68

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQ 163
           L   A       T +           G++ ++  G+  +G F + + +  
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ-GAGPLGLFGVVIARSL 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.97
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.97
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.97
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.97
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.96
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.96
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.96
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.96
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.96
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.95
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.95
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.95
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.94
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.94
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.94
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.93
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.93
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.92
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.92
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.92
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.81
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.79
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.78
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.77
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.76
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.75
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.72
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.71
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.69
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.69
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.68
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.68
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.68
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.67
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.66
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.66
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.65
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.65
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.63
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.63
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.62
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.61
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.61
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.57
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.55
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.55
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.53
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.53
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.53
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.49
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.66
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.52
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.41
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.4
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.18
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.17
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.16
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.16
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.14
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.11
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.1
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.09
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.0
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.91
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.9
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.87
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.79
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.79
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.72
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.7
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.65
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.63
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.42
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.39
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.33
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.23
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.1
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.06
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.04
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.96
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.88
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.7
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.49
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.44
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	95.37
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.12
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.95
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.9
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	94.76
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.75
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.73
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.69
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.6
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.56
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.51
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.47
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.45
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.34
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.3
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.28
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.25
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.22
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.22
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.19
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.18
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.14
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.06
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	94.03
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	93.97
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.93
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.78
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.56
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	93.48
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.45
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	93.3
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.26
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.17
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.16
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.14
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.14
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.11
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.09
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	93.06
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.05
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.96
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.92
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.75
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.59
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.46
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	92.37
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	92.27
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.23
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.96
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.88
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.83
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.64
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.59
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.37
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	91.37
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	91.12
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	91.09
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.03
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	91.03
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	90.39
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.36
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.25
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	89.85
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	89.66
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.61
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	89.49
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	89.15
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	88.65
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.37
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.32
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	87.99
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	87.86
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	87.71
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	87.21
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	87.2
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	86.68
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	86.65
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	86.29
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	86.28
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	85.99
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	85.9
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	85.66
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	85.52
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.51
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	84.96
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.87
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	84.85
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	84.46
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	83.86
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	83.64
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.38
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	83.08
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.92
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	82.84
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	82.57
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	82.44
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	82.43
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	82.36
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	82.06
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	82.02
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	82.01
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	81.72
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.64
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.06
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	80.62
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	80.43
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	80.16

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=198.63  Aligned_cols=146  Identities=30%  Similarity=0.435  Sum_probs=135.8

Q ss_pred             CEEEEEcCCCCCCceEEE-eecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~-~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~   79 (193)
                      |||++++++|.|+.+++. +.+.|.|+++||+|||.++++|++|++.+.|.+.....+|.++|||++|+|+++|+++++|
T Consensus         3 MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   82 (150)
T d1yb5a1           3 MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAF   82 (150)
T ss_dssp             EEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTTC
T ss_pred             eeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeecc
Confidence            899999999999989885 5789999999999999999999999999999888777789999999999999999999999


Q ss_pred             CCCCEEEEEc-cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEE
Q 029425           80 KVGDQVCALL-GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH  146 (193)
Q Consensus        80 ~~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~  146 (193)
                      ++||+|++.. .+|+|+||+.++++.++++|+++++++||+++...+++|+++...+..+.|+++||+
T Consensus        83 ~vGdrV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          83 KKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             CTTCEEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ccCccccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999998764 458999999999999999999999999999999999999998888899999999874

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=7.1e-31  Score=190.38  Aligned_cols=142  Identities=29%  Similarity=0.378  Sum_probs=127.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++++++|  +++++.+.|.|+++||+||+.++++|++|++.++|.++....+|.++|||++|+|+++|+++..++
T Consensus         6 MkA~v~~~~g~p--l~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~~~   83 (175)
T d1llua1           6 MKAAVVHAYGAP--LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVK   83 (175)
T ss_dssp             EEEEEBCSTTSC--CEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             cEEEEEEeCCCC--CEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccccc
Confidence            899999999877  889999999999999999999999999999999998877677899999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|...+                            .+|+|+||+.+++++++++|++++++.++++..++.++++.+ 
T Consensus        84 ~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~~~-  162 (175)
T d1llua1          84 EGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM-  162 (175)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHHHH-
T ss_pred             cCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHHHH-
Confidence            999997521                            247899999999999999999999888888888989998887 


Q ss_pred             HhcCCCCCCeEEEE
Q 029425          133 MTSHLSPGESFLVH  146 (193)
Q Consensus       133 ~~~~~~~~~~vli~  146 (193)
                      +.+. .+|++|||+
T Consensus       163 ~~g~-~~G~~VLVl  175 (175)
T d1llua1         163 RAGQ-IEGRIVLEM  175 (175)
T ss_dssp             HTTC-CSSEEEEEC
T ss_pred             HhCC-CCCCEEEeC
Confidence            4444 469999984

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.97  E-value=8.3e-32  Score=195.81  Aligned_cols=144  Identities=21%  Similarity=0.197  Sum_probs=126.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |.|++++.++   .+++++.+.|+|+++|||||++++++|++|++.+.+...  ...+.|.++|||++|+|+++|+++.+
T Consensus         2 ~maAVl~g~~---~l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~   78 (178)
T d1e3ja1           2 NLSAVLYKQN---DLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   78 (178)
T ss_dssp             CEEEEEEETT---EEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             ceEEEEEcCC---cEEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCC
Confidence            4566677654   399999999999999999999999999999988876432  22346889999999999999999999


Q ss_pred             CCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHH
Q 029425           79 WKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST  130 (193)
Q Consensus        79 ~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~  130 (193)
                      |++||+|+..+                            .+|+|++|+.++++.++++|+++++++++++..++.|+|++
T Consensus        79 ~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a  158 (178)
T d1e3ja1          79 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDA  158 (178)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHH
T ss_pred             CCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHH
Confidence            99999997532                            35899999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEcC
Q 029425          131 VFMTSHLSPGESFLVHGG  148 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga  148 (193)
                      + +..++++|++++|+|+
T Consensus       159 ~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         159 F-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             H-HHHHHCCTTCSEEEEE
T ss_pred             H-HHhCCCCCCEEEEEcc
Confidence            8 6788999999999986

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.3e-31  Score=183.75  Aligned_cols=131  Identities=34%  Similarity=0.544  Sum_probs=121.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++++|++  +++++.+.|.|+++||+||++++++|++|+..++|.++....+|+++|+|++|+|           
T Consensus         1 MkA~~~~~~G~~--l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------   67 (131)
T ss_dssp             CEEEEECSTTSC--EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------
T ss_pred             CcEEEEccCCCC--CEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------
Confidence            999999999876  8999999999999999999999999999999999988777778999999999999           


Q ss_pred             CCCEEEEEccCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEE
Q 029425           81 VGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH  146 (193)
Q Consensus        81 ~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~  146 (193)
                      +||+|.++..+|+|++|+.++++.++++|++++++++|+++..+.|||++|.+++  +.|+++|++
T Consensus        68 vGd~V~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1          68 EGRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             TTEEEEEECSSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             ccceEEEEeccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            3999999999999999999999999999999999999999999999999996655  458988863

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.6e-30  Score=182.25  Aligned_cols=142  Identities=26%  Similarity=0.408  Sum_probs=125.4

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKV   81 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~~   81 (193)
                      +.+.++++|.|+.|++++.+.|+|+++||+|||.++++|++|+..++|.++. ..+|.++|+|++|+|+++|+++.+|++
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~v   80 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKA   80 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCC-Ccceeeeccccccceeeeeeecccccc
Confidence            5788999999999999999999999999999999999999999999998764 457899999999999999999999999


Q ss_pred             CCEEEEE-ccCceeeeEEeecCCceEECCCCCCHHh--HccCcchHHHHHHHHHHhcCCCCCCeEEE
Q 029425           82 GDQVCAL-LGGGGYAEKVAVPAGQVLPVPSGVSLKD--AAAFPEVACTVWSTVFMTSHLSPGESFLV  145 (193)
Q Consensus        82 G~~V~~~-~~~g~~~~~~~~~~~~~~~~p~~~~~~~--aa~~~~~~~~a~~~l~~~~~~~~~~~vli  145 (193)
                      ||+|+.. ...|+|++|..++.+.++++|+++++++  +++++....++++++. ..++++|+++||
T Consensus        81 GdrV~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~-~~~~~~G~~VLI  146 (147)
T d1qora1          81 GDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEIL-ESRATQGSSLLI  146 (147)
T ss_dssp             TCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHH-HTTCCCBCCEEE
T ss_pred             cceeeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEe
Confidence            9999754 3568999999999999999999987764  4555667778888874 468899999998

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=5.3e-30  Score=185.06  Aligned_cols=142  Identities=30%  Similarity=0.472  Sum_probs=121.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++++++|  +++++.+.|.|+++||+|||+++++|++|++.+++.......+|.++|||++|+|+++|+++..++
T Consensus         1 MkA~v~~~~g~p--l~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~   78 (171)
T d1rjwa1           1 MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLK   78 (171)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEecCCCC--cEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCce
Confidence            999999998877  899999999999999999999999999999988877666667899999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHH
Q 029425           81 VGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF  132 (193)
Q Consensus        81 ~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  132 (193)
                      +||+|...+                            .+|+|+||+.+++++++++|++++++.| ++ ....++++.+ 
T Consensus        79 vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A-~l-~~~~~~~~~~-  155 (171)
T d1rjwa1          79 VGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQ-PL-EKINEVFDRM-  155 (171)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEE-EG-GGHHHHHHHH-
T ss_pred             eeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHH-HH-HHHHHHHHHH-
Confidence            999997421                            2489999999999999999999987544 44 3456667666 


Q ss_pred             HhcCCCCCCeEEEEcC
Q 029425          133 MTSHLSPGESFLVHGG  148 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga  148 (193)
                      ..+.+ +|++|||+|.
T Consensus       156 ~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         156 LKGQI-NGRVVLTLED  170 (171)
T ss_dssp             HTTCC-SSEEEEECCC
T ss_pred             HhcCC-CCCEEEEeCC
Confidence            34555 5999999985

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.96  E-value=5.8e-30  Score=189.04  Aligned_cols=143  Identities=22%  Similarity=0.221  Sum_probs=129.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++.|  ++++|.+.|+|+++||+||+.++++|++|++.+.+.... ..+|.++|||++|+|+++|+++..++
T Consensus         9 ~kAav~~~~~~p--l~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~-~~~p~i~GhE~~G~v~~vG~~v~~~~   85 (199)
T d1cdoa1           9 CKAAVAWEANKP--LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPGVTEFQ   85 (199)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTTCCSCC
T ss_pred             EEEEEEecCCCC--cEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccc-cccccccccccceEEEEEcCCCceec
Confidence            479999998877  899999999999999999999999999999999886553 34689999999999999999999999


Q ss_pred             CCCEEEEEcc------------------------------------------------CceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALLG------------------------------------------------GGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~~------------------------------------------------~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|+..+.                                                +|+|+||+.++++.++++|+++
T Consensus        86 ~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~~~  165 (199)
T d1cdoa1          86 PGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSV  165 (199)
T ss_dssp             TTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTS
T ss_pred             CCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCCCC
Confidence            9999976421                                                3899999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEE
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH  146 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~  146 (193)
                      ++++++++..++.+++.++......+.|+++||+
T Consensus       166 ~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         166 KLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            9999999999999999999888889999999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=7.9e-30  Score=184.06  Aligned_cols=140  Identities=20%  Similarity=0.292  Sum_probs=124.7

Q ss_pred             EEEEEcCCCCCCceEEEeecCCCC-CCCeEEEEEeEecCChhhhhhhcCCCCC--CCCCCCCCCcceEEEEEEecCCCCC
Q 029425            2 KAIVITQPGSPEVLQLQEVEDPQI-KDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~-~~~evlV~v~~~~v~~~d~~~~~~~~~~--~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      ||++++++++|  |++++.+.|++ .++||+||+.++++|++|++.+.|.+..  ..++|.++|||++|+|+++|+++.+
T Consensus         1 kA~~~~~~g~p--l~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~   78 (171)
T d1h2ba1           1 KAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEG   78 (171)
T ss_dssp             CEEEESSTTSC--CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCS
T ss_pred             CEEEEEeCCCC--CEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCc
Confidence            79999999988  89999999986 6899999999999999999998887542  2356899999999999999999999


Q ss_pred             CCCCCEEEEEc---------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           79 WKVGDQVCALL---------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        79 ~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      +++||+|+..+                           .+|+|++|+.++.++++++|++++++.+++++.++.++|+++
T Consensus        79 ~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al  158 (171)
T d1h2ba1          79 LEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL  158 (171)
T ss_dssp             CCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHH
T ss_pred             CCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHH
Confidence            99999998642                           358999999999999999999999988888889999999999


Q ss_pred             HHhcCCCCCCeEEE
Q 029425          132 FMTSHLSPGESFLV  145 (193)
Q Consensus       132 ~~~~~~~~~~~vli  145 (193)
                       +..++ .|++|||
T Consensus       159 -~~~~~-~G~~VlI  170 (171)
T d1h2ba1         159 -EKGEV-LGRAVLI  170 (171)
T ss_dssp             -HTTCC-SSEEEEE
T ss_pred             -HhcCC-CCCEEEe
Confidence             56777 8999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=5.3e-30  Score=181.63  Aligned_cols=143  Identities=20%  Similarity=0.315  Sum_probs=128.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++++..+++++.+.|+|++|||||||.++++|++|+..+.|.++.....|.++|+|++|+|.+  +....|+
T Consensus         4 ~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~~   81 (152)
T d1xa0a1           4 FQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRFR   81 (152)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSCC
T ss_pred             eEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCccc
Confidence            79999999998877889999999999999999999999999999988888776667899999999999998  5667899


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEc
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG  147 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~g  147 (193)
                      +||+|....      .+|+|+||+.++++.++++|++++ .++|+++.+.+|+|.++....+++ |++||++|
T Consensus        82 ~g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          82 EGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             TTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             cCCEEEEecCccccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            999998763      358999999999999999999998 568888899999999988888876 99999975

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.1e-29  Score=186.15  Aligned_cols=145  Identities=19%  Similarity=0.232  Sum_probs=124.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCC-CCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNV-SRW   79 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~-~~~   79 (193)
                      |||+++.++++...+++++.+.++++++|||||+.++|+|++|++.+.|.++. .++|+++|||++|+|+++|+++ +.+
T Consensus         7 ~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~-~~~P~i~GHE~~G~Vv~vG~~v~~~~   85 (192)
T d1piwa1           7 FEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKSNSGL   85 (192)
T ss_dssp             EEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTCCSSC
T ss_pred             eEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCC-CCCCcCcccccccchhhccccccccc
Confidence            79999999988888888888877789999999999999999999999987664 4579999999999999999987 679


Q ss_pred             CCCCEEEEE-----------------------------------ccCceeeeEEeecCCceEECCCCCCHHhHccCcchH
Q 029425           80 KVGDQVCAL-----------------------------------LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVA  124 (193)
Q Consensus        80 ~~G~~V~~~-----------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  124 (193)
                      ++||+|...                                   ..+|+|++|+.+++++++++|++++++.|+.+...+
T Consensus        86 k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~  165 (192)
T d1piwa1          86 KVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGV  165 (192)
T ss_dssp             CTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHH
T ss_pred             CCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHHHHHHH
Confidence            999999531                                   124899999999999999999999987765443346


Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEc
Q 029425          125 CTVWSTVFMTSHLSPGESFLVHG  147 (193)
Q Consensus       125 ~~a~~~l~~~~~~~~~~~vli~g  147 (193)
                      .+||+++ +.++++++++|++..
T Consensus       166 ~ta~~~l-~~~~vk~g~~Vvv~~  187 (192)
T d1piwa1         166 HEAFERM-EKGDVRYRFTLVGYD  187 (192)
T ss_dssp             HHHHHHH-HHTCCSSEEEEECCH
T ss_pred             HHHHHHH-HHhCCCCCCEEEEEC
Confidence            7899999 578999999999853

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.96  E-value=3.8e-29  Score=184.23  Aligned_cols=143  Identities=24%  Similarity=0.256  Sum_probs=128.2

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++++++|  |++++.+.|+|+++||||||+++++|++|++.++|.+.. ..+|.++|||++|+|+++|+++..++
T Consensus         7 ~kAav~~~~g~~--l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~-~~~p~v~GhE~~G~V~~vG~~V~~~~   83 (197)
T d2fzwa1           7 CKAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKLK   83 (197)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             EEEEEEccCCCC--CEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCccc-ccccccCCcceeeEEEeecCCceecC
Confidence            799999999888  999999999999999999999999999999999997654 34799999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|+..+                                                .+|+|+||+.+++.+++++|+++
T Consensus        84 ~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~~l  163 (197)
T d2fzwa1          84 AGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLI  163 (197)
T ss_dssp             TTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTS
T ss_pred             CCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECCCCC
Confidence            999997532                                                02789999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEE
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH  146 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~  146 (193)
                      ++++++++..++.+++.++.....-+.+++++|+
T Consensus       164 ~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         164 KVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             CSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999998665555778898874

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.96  E-value=4.9e-29  Score=184.50  Aligned_cols=140  Identities=24%  Similarity=0.283  Sum_probs=124.0

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++++++|  +++++.+.|.|+++||||||.++++|++|++.++|.++.  .+|.++|||++|+|+++|+++.+++
T Consensus         9 ~KAaV~~~~g~p--l~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~v~GHE~~G~V~~vG~~V~~~~   84 (202)
T d1e3ia1           9 CKAAIAWKTGSP--LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA--LFPVVLGHECAGIVESVGPGVTNFK   84 (202)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC--CSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             EEEEEEccCCCC--CEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc--ccccccccccceEEeeecCCceecc
Confidence            799999999887  899999999999999999999999999999999987754  4699999999999999999999999


Q ss_pred             CCCEEEEEc----------------------------------------------------cCceeeeEEeecCCceEEC
Q 029425           81 VGDQVCALL----------------------------------------------------GGGGYAEKVAVPAGQVLPV  108 (193)
Q Consensus        81 ~G~~V~~~~----------------------------------------------------~~g~~~~~~~~~~~~~~~~  108 (193)
                      +||+|+...                                                    .+|+|+||+.+++..++++
T Consensus        85 ~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l~~l  164 (202)
T d1e3ia1          85 PGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARV  164 (202)
T ss_dssp             TTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhEEEC
Confidence            999997632                                                    0288999999999999999


Q ss_pred             CCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEc
Q 029425          109 PSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG  147 (193)
Q Consensus       109 p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~g  147 (193)
                      |++++++.++++..++.+.+.++..   +++|++|.|+.
T Consensus       165 P~~~~~~~~~~~~~~~~~~~~a~~~---~k~G~~V~vi~  200 (202)
T d1e3ia1         165 DDEFDLDLLVTHALPFESINDAIDL---MKEGKSIRTIL  200 (202)
T ss_dssp             CTTSCGGGGEEEEEEGGGHHHHHHH---HHTTCCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEEE
Confidence            9999999888888888888888743   46899887764

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.96  E-value=2.9e-28  Score=178.98  Aligned_cols=141  Identities=26%  Similarity=0.315  Sum_probs=121.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |+|+++.+.+.+  |++++.+.|+|+++||+||+.++++|++|++.+.|.++.  ++|.++|||++|+|+++|+++++|+
T Consensus         4 ~~Aav~~~~g~~--l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~i~GHE~~G~V~~vG~~v~~~~   79 (194)
T d1f8fa1           4 IIAAVTPCKGAD--FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTELQ   79 (194)
T ss_dssp             EEEEEBCSTTCC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             eEEEEEcCCCCC--cEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc--cCCcccccceEEEeeecCccceeEc
Confidence            689999998877  999999999999999999999999999999999988764  4799999999999999999999999


Q ss_pred             CCCEEEEEc-------------------------------------------------cCceeeeEEeecCCceEECCCC
Q 029425           81 VGDQVCALL-------------------------------------------------GGGGYAEKVAVPAGQVLPVPSG  111 (193)
Q Consensus        81 ~G~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~  111 (193)
                      +||+|+..+                                                 ..|+|++|..++..+++++|++
T Consensus        80 vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~  159 (194)
T d1f8fa1          80 VGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKD  159 (194)
T ss_dssp             TTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTT
T ss_pred             cCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCCC
Confidence            999996521                                                 0257889999999999999988


Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA  171 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~  171 (193)
                      ++++++                         +++.|+ |.+|++++|+++.+|++.++.+
T Consensus       160 i~~~~~-------------------------~~i~g~-g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         160 FPFDQL-------------------------VKFYAF-DEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CCGGGG-------------------------EEEEEG-GGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCcccE-------------------------EEEeCc-HHHHHHHHHHHHHcCCCEEEEe
Confidence            775443                         445565 9999999999999999766554

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.5e-28  Score=170.76  Aligned_cols=129  Identities=19%  Similarity=0.314  Sum_probs=114.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++++++..+++++.+.|+|+++||+|||.++++|+.|...+.|.++.....|.++|+|++|+|+++|.  ..++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence            99999999999988999999999999999999999999999999999998877777899999999999999766  4799


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHH
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTV  131 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  131 (193)
                      +||+|....      .+|+|+||+.+++++++++|+++|+++||+++.++.||+.++
T Consensus        79 ~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          79 AGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             TTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             ceeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999998654      259999999999999999999999999999998888886544

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=5.3e-28  Score=175.38  Aligned_cols=141  Identities=29%  Similarity=0.353  Sum_probs=116.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC-------CCCCCCCCCCcceEEEEEEec
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP-------PPKGASPYPGLECSGTILSVG   73 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~-------~~~~~p~~lg~e~~G~V~~vG   73 (193)
                      |||++++++|+|  +++++.+.|+|+++||+||+.++++|++|++.++|.++       ...++|+++|||++|+|+++|
T Consensus         1 MKA~~~~~~G~p--l~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g   78 (177)
T d1jvba1           1 MRAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVG   78 (177)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEEC
T ss_pred             CeEEEEEeCCCC--CEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeec
Confidence            999999999987  89999999999999999999999999999999988643       223579999999999999999


Q ss_pred             CCCCCCCCCCEEEEEc---------------------------cCceeeeEEeecCCc-eEECCCCCCHHhHccCcchHH
Q 029425           74 KNVSRWKVGDQVCALL---------------------------GGGGYAEKVAVPAGQ-VLPVPSGVSLKDAAAFPEVAC  125 (193)
Q Consensus        74 ~~~~~~~~G~~V~~~~---------------------------~~g~~~~~~~~~~~~-~~~~p~~~~~~~aa~~~~~~~  125 (193)
                      +++.+|++||+|...+                           .+|+|+||+.++..+ ++++|+..+.+.++.+..++.
T Consensus        79 ~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~  158 (177)
T d1jvba1          79 DEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEAN  158 (177)
T ss_dssp             TTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHH
T ss_pred             cCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChHHHHHHHHHHHH
Confidence            9999999999997532                           248999999997655 566666544444444456888


Q ss_pred             HHHHHHHHhcCCCCCCeEEE
Q 029425          126 TVWSTVFMTSHLSPGESFLV  145 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli  145 (193)
                      ++++++ ...+. .|++|||
T Consensus       159 ~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         159 EAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             HHHHHH-HTTCC-CSEEEEE
T ss_pred             HHHHHH-Hhhcc-cCCceEC
Confidence            999888 55555 5889887

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-28  Score=177.17  Aligned_cols=140  Identities=21%  Similarity=0.233  Sum_probs=116.9

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCC--CCCCCCCCCCcceEEEEEEecCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPYPGLECSGTILSVGKNVSR   78 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~--~~~~~p~~lg~e~~G~V~~vG~~~~~   78 (193)
                      |+|++++.++   .+++++.+.|+|+++||+|||.++++|++|++.+++...  ...+.|.++|||++|+|+++|+++.+
T Consensus         8 ~~a~V~~gp~---~l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~   84 (185)
T d1pl8a1           8 NLSLVVHGPG---DLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (185)
T ss_dssp             CEEEEEEETT---EEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             CEEEEEeCCC---eEEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceee
Confidence            6799999765   499999999999999999999999999999998875321  12346889999999999999999999


Q ss_pred             CCCCCEEEEEc----------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHH
Q 029425           79 WKVGDQVCALL----------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST  130 (193)
Q Consensus        79 ~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~  130 (193)
                      |++||+|+..+                            .+|+|++|+.++.++++++|+++++++++.++  +.+++++
T Consensus        85 ~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~p--l~~a~~a  162 (185)
T d1pl8a1          85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFP--LEKALEA  162 (185)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEE--GGGHHHH
T ss_pred             ecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHH--HHHHHHH
Confidence            99999997532                            24789999999999999999999988877553  3445666


Q ss_pred             HHHhcCCCCCCeEEEE
Q 029425          131 VFMTSHLSPGESFLVH  146 (193)
Q Consensus       131 l~~~~~~~~~~~vli~  146 (193)
                      + +..++++|++|+|.
T Consensus       163 ~-~~~~~~~G~~VlIg  177 (185)
T d1pl8a1         163 F-ETFKKGLGLKIMLK  177 (185)
T ss_dssp             H-HHHHTTCCSEEEEE
T ss_pred             H-HHhCCCCCCEEEEE
Confidence            5 45567899999984

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=9.8e-30  Score=182.04  Aligned_cols=148  Identities=22%  Similarity=0.312  Sum_probs=130.7

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++++.+++..+++++.+.|++++|||||||+++++|++|+..+.|.++.....|.++|+|++|+|.+  +....++
T Consensus         4 ~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~~~   81 (162)
T d1tt7a1           4 FQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPRFA   81 (162)
T ss_dssp             EEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTTCC
T ss_pred             EEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccccc
Confidence            79999999998888999999999999999999999999999999999998876666788999999999998  5677899


Q ss_pred             CCCEEEEEc------cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCch
Q 029425           81 VGDQVCALL------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSG  151 (193)
Q Consensus        81 ~G~~V~~~~------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~  151 (193)
                      +||+|....      .+|+|+||+.+++++++++|+++++++||+++..++|+|.++ ...+...+++|||+|++|.
T Consensus        82 ~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~-~~~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1          82 EGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVS-LEETPGALKDILQNRIQGR  157 (162)
T ss_dssp             TTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEEC-STTHHHHHHHTTTTCCSSE
T ss_pred             cceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEECCcce
Confidence            999998754      358999999999999999999999999999999999999765 2334455578888888764

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=3.2e-27  Score=171.74  Aligned_cols=137  Identities=17%  Similarity=0.190  Sum_probs=116.6

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC---
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS---   77 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~---   77 (193)
                      |||++++++++|  +++++.+.|+|+++|||||+.+++||++|++.++|.++. .++|+++|||++|+|+++|+++.   
T Consensus         5 ~kA~v~~~~~~p--l~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~-~~~P~vlGHE~~G~V~~vG~~v~~~~   81 (184)
T d1vj0a1           5 AHAMVLEKFNQP--LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVNGEKRDLN   81 (184)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEESSCCBCTT
T ss_pred             EEEEEEecCCCC--cEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCc-cccccccceeeeeeeeEEeccccccc
Confidence            689999998877  899999999999999999999999999999999998764 35799999999999999999985   


Q ss_pred             --CCCCCCEEEEEc------------------------------------cCceeeeEEeec-CCceEECCCCCCHHhHc
Q 029425           78 --RWKVGDQVCALL------------------------------------GGGGYAEKVAVP-AGQVLPVPSGVSLKDAA  118 (193)
Q Consensus        78 --~~~~G~~V~~~~------------------------------------~~g~~~~~~~~~-~~~~~~~p~~~~~~~aa  118 (193)
                        .+++||+|+..+                                    .+|+|++|+.++ ++.++++|++++.++  
T Consensus        82 ~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~~--  159 (184)
T d1vj0a1          82 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL--  159 (184)
T ss_dssp             SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEEE--
T ss_pred             cccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHHH--
Confidence              467999997521                                    158999999986 578999999998543  


Q ss_pred             cCcchHHHHHHHHHHhcCCCCCCeEEEEc
Q 029425          119 AFPEVACTVWSTVFMTSHLSPGESFLVHG  147 (193)
Q Consensus       119 ~~~~~~~~a~~~l~~~~~~~~~~~vli~g  147 (193)
                          ++.+|++++ +..++++|++|+|+.
T Consensus       160 ----pl~~A~~a~-~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         160 ----PLKEANKAL-ELMESREALKVILYP  183 (184)
T ss_dssp             ----EGGGHHHHH-HHHHHTSCSCEEEEC
T ss_pred             ----HHHHHHHHH-HHhCCCcCCEEEEee
Confidence                344677777 667899999999974

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=7.1e-30  Score=188.50  Aligned_cols=154  Identities=22%  Similarity=0.310  Sum_probs=125.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCC-------CCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEec
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQI-------KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVG   73 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~-------~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG   73 (193)
                      +||++++.+++   ++++|.+.|++       .++||+||+.++++|++|++.+.|.++.  ++|+++|||++|+|+++|
T Consensus         2 ~kA~v~~~~~~---le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~--~~P~v~GHE~~G~Vv~vG   76 (201)
T d1kola1           2 NRGVVYLGSGK---VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKG   76 (201)
T ss_dssp             EEEEEEEETTE---EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEEC
T ss_pred             cEEEEEeCCCc---eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc--ccceeccceeeeeeeccc
Confidence            58999998764   99999998865       4699999999999999999999988764  479999999999999999


Q ss_pred             CCCCCCCCCCEEEEEc-------------------------------------cCceeeeEEeecC--CceEECCCCCCH
Q 029425           74 KNVSRWKVGDQVCALL-------------------------------------GGGGYAEKVAVPA--GQVLPVPSGVSL  114 (193)
Q Consensus        74 ~~~~~~~~G~~V~~~~-------------------------------------~~g~~~~~~~~~~--~~~~~~p~~~~~  114 (193)
                      ++++.|++||||...+                                     .+|+|+||+.++.  .+++++|++..+
T Consensus        77 ~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~  156 (201)
T d1kola1          77 RDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKA  156 (201)
T ss_dssp             TTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHH
T ss_pred             cccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCCCh
Confidence            9999999999996321                                     1489999999975  369999998776


Q ss_pred             HhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC
Q 029425          115 KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV  165 (193)
Q Consensus       115 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~  165 (193)
                      .+++++..++.++++++ ...+.+.++    +|+ |.+|++++|+||.+||
T Consensus       157 ~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~-G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         157 MEKINIAEVVGVQVISL-DDAPRGYGE----FDA-GVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HHTCCHHHHHTEEEECG-GGHHHHHHH----HHH-TCSCEEEECTTCSSCC
T ss_pred             HHHHHHHHHHHHHHHHH-HhCCCCCeE----Eee-CHHHHHHHHHHHHcCC
Confidence            67766666666666665 333334342    476 9999999999999886

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.93  E-value=2.5e-26  Score=169.31  Aligned_cols=140  Identities=25%  Similarity=0.291  Sum_probs=116.5

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++.++++|  +++++++.|+|+++||||||.++|+|++|++.+.|.++.  .+|.++|||++|+|+++|+++..++
T Consensus         9 ~KAavl~~~~~~--l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~--~~P~i~GHE~~G~Vv~vG~~v~~~~   84 (198)
T d2jhfa1           9 CKAAVLWEEKKP--FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEGVTTVR   84 (198)
T ss_dssp             EEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTTCCSCC
T ss_pred             EEEEEEecCCCC--CEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc--ccceecccceeEEEEecCccccCcC
Confidence            799999988877  999999999999999999999999999999999998764  4799999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|+...                                                ..|+|+||.++++.+++++|+.+
T Consensus        85 vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p~~~  164 (198)
T d2jhfa1          85 PGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAF  164 (198)
T ss_dssp             TTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTS
T ss_pred             CCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECCCCC
Confidence            999997522                                                02789999999999999999998


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEc
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHG  147 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~g  147 (193)
                      +++.+++...++.....+.   ..+++|++|.|..
T Consensus       165 ~~e~l~~~~~~~~~v~~g~---~~l~~G~~VaVi~  196 (198)
T d2jhfa1         165 ALDPLITHVLPFEKINEGF---DLLRSGESIRTIL  196 (198)
T ss_dssp             CCGGGEEEEEEGGGHHHHH---HHHHTTCCSEEEE
T ss_pred             CHHHHHHHHHHHHhhhhCC---ceeeCCCEEEEEE
Confidence            8776655544443333222   2357888887763

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.2e-25  Score=161.42  Aligned_cols=131  Identities=18%  Similarity=0.277  Sum_probs=110.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++...+++|  |++++.+.|+|+++|||||+.+++||++|++.+.|.++. ..+|+++|||++|+|+++|+++.+++
T Consensus         1 m~a~~~~~~~~p--l~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~-~~~P~i~GhE~~G~V~~vG~~V~~~~   77 (179)
T d1uufa1           1 IKAVGAYSAKQP--LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYA   77 (179)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEccCCCC--CEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeecc-ccccccccccccccchhhccccccCC
Confidence            999999999887  999999999999999999999999999999999987654 45799999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------cCceeeeEEeecCCceEECCCCCCHHhHccCcchH
Q 029425           81 VGDQVCALL------------------------------------GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVA  124 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  124 (193)
                      +||+|...+                                    .+|+|+||+.+++++++++|+.....   .+..++
T Consensus        78 vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~---~~a~~l  154 (179)
T d1uufa1          78 PGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEM---IRADQI  154 (179)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEE---ECGGGH
T ss_pred             CCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcCh---hHhchh
Confidence            999995321                                    13789999999999999999654322   233567


Q ss_pred             HHHHHHHHHhcCCC
Q 029425          125 CTVWSTVFMTSHLS  138 (193)
Q Consensus       125 ~~a~~~l~~~~~~~  138 (193)
                      .++++++ ..+.++
T Consensus       155 ~~a~~a~-~~a~v~  167 (179)
T d1uufa1         155 NEAYERM-LRGDVK  167 (179)
T ss_dssp             HHHHHHH-HTTCSS
T ss_pred             HHHHHHH-HHhCcc
Confidence            7888887 455554

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.92  E-value=1.1e-25  Score=162.77  Aligned_cols=117  Identities=21%  Similarity=0.226  Sum_probs=100.4

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||+++..+++   ++++|.+.|.|+++||+||+.++++|++|++.+.+.... .++|+++|||++|+|+++|+++++|+
T Consensus         1 MKa~v~~~~~~---l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~-~~~P~i~GhE~~G~V~~vG~~v~~~~   76 (177)
T d1jqba1           1 MKGFAMLGINK---LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALG-DRKNMILGHEAVGEVVEVGSEVKDFK   76 (177)
T ss_dssp             CEEEEEEETTE---EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTC-CCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEEeCCC---eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCC-CCCCccCcceeeEEeeecccccceec
Confidence            99999998765   999999999999999999999999999999877544332 34699999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------cCceeeeEEeecC--CceEECCCCCCHHhHccCc
Q 029425           81 VGDQVCALL------------------------------GGGGYAEKVAVPA--GQVLPVPSGVSLKDAAAFP  121 (193)
Q Consensus        81 ~G~~V~~~~------------------------------~~g~~~~~~~~~~--~~~~~~p~~~~~~~aa~~~  121 (193)
                      +||||+..+                              .+|+|+||+.++.  .+++++|+++++++++...
T Consensus        77 vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~  149 (177)
T d1jqba1          77 PGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHV  149 (177)
T ss_dssp             TTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEE
T ss_pred             CCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHH
Confidence            999997422                              2589999999986  4689999999988876543

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.92  E-value=6.9e-28  Score=174.31  Aligned_cols=156  Identities=24%  Similarity=0.274  Sum_probs=127.9

Q ss_pred             CEEEEEcCCCCCC-c--eEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCC---------CCCCCCCCcceEEE
Q 029425            1 MKAIVITQPGSPE-V--LQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPP---------KGASPYPGLECSGT   68 (193)
Q Consensus         1 m~a~~~~~~~~~~-~--~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~---------~~~p~~lg~e~~G~   68 (193)
                      |||++++++|+|. .  ++..+.+.|+|+++||+|||+++++|++|++.++|.++..         ...|.++|+|++|+
T Consensus         4 ~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g~   83 (175)
T d1gu7a1           4 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFE   83 (175)
T ss_dssp             EEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEE
T ss_pred             eEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccccc
Confidence            6999999999874 3  4445666778899999999999999999999998875431         24577899999999


Q ss_pred             EEEecCCCCCCCCCCEEEEEc-cCceeeeEEeecCCceEECCCCCCHHhHccCcchHHHHHHHHHH-hcCCCCCCeEEEE
Q 029425           69 ILSVGKNVSRWKVGDQVCALL-GGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFM-TSHLSPGESFLVH  146 (193)
Q Consensus        69 V~~vG~~~~~~~~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~-~~~~~~~~~vli~  146 (193)
                      |++.|.++..++.||+|.... ..|+|++|+.++++.++++|++++.+.+  +....+|+|+++.. ..++++|++++|+
T Consensus        84 V~~~~~~~~~~~~g~~v~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~  161 (175)
T d1gu7a1          84 VIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQD  161 (175)
T ss_dssp             EEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHH
T ss_pred             cccccccccccccccceeccccccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            999999999999999998654 3588999999999999999998754443  44567788887643 3578999999999


Q ss_pred             c-CCchHHHHHHH
Q 029425          147 G-GSSGIGTFAIQ  158 (193)
Q Consensus       147 g-a~g~~G~~~i~  158 (193)
                      | |+|++|++++|
T Consensus       162 gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         162 GVANSKDGKQLIT  174 (175)
T ss_dssp             HHHTGGGSCEEEE
T ss_pred             CccchhhhheEEe
Confidence            8 55789987765

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.92  E-value=2.6e-24  Score=158.19  Aligned_cols=139  Identities=24%  Similarity=0.261  Sum_probs=115.1

Q ss_pred             CEEEEEcCCCCCCceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCCCCC
Q 029425            1 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWK   80 (193)
Q Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~~~~   80 (193)
                      |||++++++++|  |++++++.|+|+++||||||.++++|++|++.+.|.++.  ++|.++|||++|+|+++|+++.+++
T Consensus         9 ~KAav~~~~g~~--l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~--~~P~i~GHE~~G~Vv~~G~~v~~~~   84 (198)
T d1p0fa1           9 CKAAVAWEPHKP--LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS--KFPVILGHEAVGVVESIGAGVTCVK   84 (198)
T ss_dssp             EEEEEBSSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             EEEEEEccCCCC--CEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc--ccccccceeeeeeeeecCcccccCc
Confidence            899999998877  999999999999999999999999999999999988754  4799999999999999999999999


Q ss_pred             CCCEEEEEc------------------------------------------------cCceeeeEEeecCCceEECCCCC
Q 029425           81 VGDQVCALL------------------------------------------------GGGGYAEKVAVPAGQVLPVPSGV  112 (193)
Q Consensus        81 ~G~~V~~~~------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~  112 (193)
                      +||+|+..+                                                .+++|+||..+++..++++|+++
T Consensus        85 ~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~~~  164 (198)
T d1p0fa1          85 PGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKI  164 (198)
T ss_dssp             TTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTS
T ss_pred             CCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCCCC
Confidence            999998522                                                12679999999999999999999


Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHH
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGT  154 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~  154 (193)
                      +++.++...+...+          +.+++.++|.|+ |.+|+
T Consensus       165 ~~~~~~~~~~~~~~----------v~~~~~vlv~G~-G~iGl  195 (198)
T d1p0fa1         165 NVNFLVSTKLTLDQ----------INKAFELLSSGQ-GVRSI  195 (198)
T ss_dssp             CGGGGEEEEECGGG----------HHHHHHHTTTSS-CSEEE
T ss_pred             CHHHHHHhhcchhh----------cCCCCEEEEECC-CcceE
Confidence            87776544333222          233445667775 66653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-19  Score=128.52  Aligned_cols=82  Identities=24%  Similarity=0.350  Sum_probs=78.5

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +|+++||+++++++|||+++.+..++++|++|||+|++|.+|++++|+++.+|++|+++++++++.++++++|+++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~   80 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNH   80 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccccc
Confidence            58999999999999999999888999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus        81 ~~   82 (174)
T d1yb5a2          81 RE   82 (174)
T ss_dssp             TS
T ss_pred             cc
Confidence            64

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.7e-19  Score=130.12  Aligned_cols=82  Identities=27%  Similarity=0.323  Sum_probs=78.8

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +|+++||+++++++|||++|.+..++++|++|+|+|++|.+|++++|+|+.+|++|++++++++|.++++++|+++++||
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~   80 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINY   80 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEEC
Confidence            58999999999999999999888899999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus        81 ~~   82 (179)
T d1qora2          81 RE   82 (179)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.77  E-value=8.6e-18  Score=117.03  Aligned_cols=132  Identities=14%  Similarity=0.155  Sum_probs=102.1

Q ss_pred             EEEEEcCC--CCC--CceEEEeecCCCCCCCeEEEEEeEecCChhhhhhhcCCCCCCCCCCCCCCcceEEEEEEecCCCC
Q 029425            2 KAIVITQP--GSP--EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS   77 (193)
Q Consensus         2 ~a~~~~~~--~~~--~~~~~~~~~~~~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~p~~lg~e~~G~V~~vG~~~~   77 (193)
                      |+|++.+.  |.|  ++|++++.+.|+|++||||||++|.++++..+..+... .    ....+..+++|+|++  |+.+
T Consensus         5 k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~-~----~g~~~~g~~vg~Vv~--S~~~   77 (147)
T d1v3va1           5 KSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRL-K----EGAVMMGQQVARVVE--SKNS   77 (147)
T ss_dssp             EEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGS-C----TTSBCCCCEEEEEEE--ESCT
T ss_pred             EEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccccc-c----cCCccccceEEEEEE--eCCC
Confidence            68888885  444  56999999999999999999999999999877655322 1    234566788999988  7788


Q ss_pred             CCCCCCEEEEEccCceeeeEEeecCCceEECCCCCCH-----HhHccCcchHHHH-HHHHHHhcCCCCCCeEEE
Q 029425           78 RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSL-----KDAAAFPEVACTV-WSTVFMTSHLSPGESFLV  145 (193)
Q Consensus        78 ~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~-----~~aa~~~~~~~~a-~~~l~~~~~~~~~~~vli  145 (193)
                      +|++||+|.+.   ++|++|.+.+.+.+.++|+..+.     .+.+++....+|| |..|  ....+.|++|++
T Consensus        78 ~f~~GD~V~g~---~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl--~~~~k~Getvv~  146 (147)
T d1v3va1          78 AFPAGSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEM--LNGANLGKAVVT  146 (147)
T ss_dssp             TSCTTCEEEEC---CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHH--HTTCCSSEEEEE
T ss_pred             cccCCCEEEEc---cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHh--hCCCCCCCEEEe
Confidence            99999999876   56999999999999999865432     2345566677775 4455  444577999987

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=9.7e-19  Score=125.34  Aligned_cols=81  Identities=26%  Similarity=0.409  Sum_probs=76.7

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++|||+++++++|||+++. ..++++|++|+|+|++|.+|++++|+++.+|++|+++++++++.+.++++|+++++||
T Consensus         1 ls~eeAA~l~~~~~TA~~al~-~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~   79 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALK-RAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATY   79 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHH-HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeeh
Confidence            578999999999999999995 5899999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus        80 ~~   81 (171)
T d1iz0a2          80 AE   81 (171)
T ss_dssp             GG
T ss_pred             hh
Confidence            63

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.75  E-value=1e-18  Score=125.58  Aligned_cols=82  Identities=20%  Similarity=0.243  Sum_probs=75.9

Q ss_pred             CCHHhHccCcchHHHHHHHHH---HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          112 VSLKDAAAFPEVACTVWSTVF---MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~---~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      +|++|||+++.+++|||++++   +.++.++|++|||+|++|++|.+++|+++.+|++|+.++++++|.++++++|++++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~v   80 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEV   80 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccccee
Confidence            589999999999999997654   45788999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCC
Q 029425          189 IGFGY  193 (193)
Q Consensus       189 ~~~~~  193 (193)
                      +||++
T Consensus        81 i~~~~   85 (176)
T d1xa0a2          81 LARED   85 (176)
T ss_dssp             EECC-
T ss_pred             eecch
Confidence            99863

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=5.5e-18  Score=122.41  Aligned_cols=79  Identities=27%  Similarity=0.468  Sum_probs=75.3

Q ss_pred             HhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          115 KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       115 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +|||+++++++|||+++.+.+++++|++|||+|++|.+|++++|+|+.+|++++++++++++.++++++|+++++|+++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCc
Confidence            4788999999999999989899999999999999999999999999999999999999999999999999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.71  E-value=3.3e-17  Score=116.53  Aligned_cols=80  Identities=18%  Similarity=0.286  Sum_probs=75.4

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +|++++|+++++++|+|+++ +..++++|++|+|.|+ |.+|++++|+++.+|++|++++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccc
Confidence            57899999999999999999 4689999999999997 999999999999999999999999999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus        79 ~~   80 (166)
T d1llua2          79 RQ   80 (166)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.2e-17  Score=101.88  Aligned_cols=74  Identities=16%  Similarity=0.225  Sum_probs=68.0

Q ss_pred             CCHHhHccCcchHHHHHHHHH---HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          112 VSLKDAAAFPEVACTVWSTVF---MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~---~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      +|++|+++++.++.|||.+++   +....+++++++|+|++|++|.+++|+++.+|++|+++++++++.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCCC
Confidence            578999999999999998765   34567899999999999999999999999999999999999999999999996

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.8e-17  Score=119.15  Aligned_cols=82  Identities=15%  Similarity=0.176  Sum_probs=73.4

Q ss_pred             CCHHhHccCcchHHHHHHHHH---HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          112 VSLKDAAAFPEVACTVWSTVF---MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~---~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      +|+.+|++++++++|||++++   +....++++++||+|++|++|.+++|+|+.+|++||+++++++|.+.++++|+|++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~v   80 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRV   80 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccc
Confidence            578999999999999997764   33445566799999999999999999999999999999999999999999999999


Q ss_pred             ecCCC
Q 029425          189 IGFGY  193 (193)
Q Consensus       189 ~~~~~  193 (193)
                      +||++
T Consensus        81 i~~~~   85 (177)
T d1o89a2          81 LPRDE   85 (177)
T ss_dssp             EEGGG
T ss_pred             ccccc
Confidence            99864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.68  E-value=7.8e-17  Score=116.33  Aligned_cols=76  Identities=16%  Similarity=0.264  Sum_probs=72.5

Q ss_pred             ccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCCC
Q 029425          118 AAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFGY  193 (193)
Q Consensus       118 a~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~~  193 (193)
                      +++.++++|||++|.+..++++|++|||+|++|.+|++++|+++.+|++||.+++++++.++++++|+++++|+++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKT   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTS
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhccccc
Confidence            4678899999999999999999999999999999999999999999999999999999999999999999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=6.3e-17  Score=115.37  Aligned_cols=78  Identities=19%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +.+.||++.+++.|+|+++ +..++++|++++|+|+ |.+|++++|+++.+|++|++++++++|+++++++|+++++|++
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeecc
Confidence            3467889999999999999 4689999999999997 9999999999999999999999999999999999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.4e-16  Score=113.59  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=74.6

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      .+++++|++.++.+|+|+++ +..++++|++|+|+|+ |.+|++++|+++.+|+++++++++++++++++++|+++++|+
T Consensus         4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNS   81 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred             ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEEC
Confidence            56788888999999999999 5789999999999997 999999999999999999999999999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus        82 ~~   83 (168)
T d1uufa2          82 RN   83 (168)
T ss_dssp             TC
T ss_pred             ch
Confidence            74

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=114.79  Aligned_cols=79  Identities=22%  Similarity=0.234  Sum_probs=73.2

Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++||++++++.|+|+++.+.+++++|++|+|+|+ |++|++++|+++.+|+ +|++++++++|+++++++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~   80 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeC
Confidence            467899999999999999988899999999999998 8999999999999997 78888889999999999999999988


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus        81 ~   81 (176)
T d2fzwa2          81 Q   81 (176)
T ss_dssp             G
T ss_pred             C
Confidence            5

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.66  E-value=2.6e-16  Score=111.86  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=75.3

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +|+++||+++++++|+|+++ +..++++|++++|+|+ |.+|++++++++..|++|++++++++|+++++++|++.++|+
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceeccc
Confidence            57899999999999999999 5678999999999986 999999999999999999999999999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      .+
T Consensus        79 ~~   80 (168)
T d1rjwa2          79 LK   80 (168)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.66  E-value=2.3e-16  Score=113.21  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=75.3

Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++||.+.+.+.|+|+++.+..++++|++|+|+|+ |++|++++|+++.+|+ +|++++.+++|++.++++|++++||+
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~   81 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECc
Confidence            478899999999999999988899999999999997 9999999999999996 89999999999999999999999997


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus        82 ~~   83 (176)
T d1d1ta2          82 KD   83 (176)
T ss_dssp             GG
T ss_pred             cc
Confidence            63

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.66  E-value=1.8e-16  Score=113.65  Aligned_cols=78  Identities=18%  Similarity=0.187  Sum_probs=73.2

Q ss_pred             HHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          114 LKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       114 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      |.|||++.+++.|+|+++.+.+++++|++|+|+|+ |++|++++|+++.+|+ +|++++++++|+++++++|+++++|++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~   80 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPK   80 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCC
Confidence            46789999999999999888899999999999997 9999999999999997 799999999999999999999999875

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.65  E-value=1.1e-16  Score=116.18  Aligned_cols=81  Identities=17%  Similarity=0.302  Sum_probs=72.4

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEE-cCCchHHHHHHHHHHHCCCEEEEEeCCcch----HHHHhhcCCc
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVH-GGSSGIGTFAIQMGKCQGVRVFVTAGLATR----FILCQPFNIR  186 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~-ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~----~~~~~~~G~~  186 (193)
                      +|+++||+++.+++|||++|.+..++++|++++|+ |++|.+|++++|+||.+|++||+++++.++    .+.++++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            57899999999999999999888999999988886 778999999999999999999999876554    4567899999


Q ss_pred             EEecCC
Q 029425          187 VFIGFG  192 (193)
Q Consensus       187 ~~~~~~  192 (193)
                      +++||+
T Consensus        81 ~vi~~~   86 (189)
T d1gu7a2          81 QVITED   86 (189)
T ss_dssp             EEEEHH
T ss_pred             EEEecc
Confidence            999874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.65  E-value=2.5e-16  Score=112.84  Aligned_cols=80  Identities=15%  Similarity=0.238  Sum_probs=74.4

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +++++|+.+++++.|+|+++ +.+++++|++|+|+|+ |.+|++++|+++.+|+ +|++++.+++|++.++++|+++++|
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~   78 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN   78 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEEC
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHhhCcccccc
Confidence            46789998999999999998 6789999999999997 9999999999999998 7999999999999999999999999


Q ss_pred             CCC
Q 029425          191 FGY  193 (193)
Q Consensus       191 ~~~  193 (193)
                      +++
T Consensus        79 ~~~   81 (174)
T d1jqba2          79 YKN   81 (174)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            863

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=6.1e-16  Score=111.52  Aligned_cols=80  Identities=18%  Similarity=0.256  Sum_probs=73.4

Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +++.+|.+.++++|||+++.+..++++|++|+|+|+ |.+|++++|+++++|+ +|++++++++|++.++++|+++++|+
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~   80 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNR   80 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECC-CccchhheecccccccccccccccccccccccccccceEEEec
Confidence            345677788899999999988889999999999997 9999999999999998 79999999999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus        81 ~~   82 (182)
T d1vj0a2          81 RE   82 (182)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.63  E-value=1e-15  Score=109.56  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=74.1

Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +++++|.+.+.+.|+|+++.+.+++++|++|+|+|+ |.+|++++|+++.+|+ +|++++.+++|++.++++|+++++|+
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~   80 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNP   80 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCC
Confidence            578899999999999999988899999999999997 9999999999999998 78899999999999999999999986


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus        81 ~   81 (174)
T d1e3ia2          81 R   81 (174)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.62  E-value=1.5e-15  Score=108.72  Aligned_cols=79  Identities=18%  Similarity=0.240  Sum_probs=73.4

Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++||.+.+++.|+|+++.+.+++++|++|+|+|+ |++|.+++++++..++ +|++++++++|++.++++||+++||+
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~   80 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP   80 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcC
Confidence            467899999999999999988899999999999997 9999999999999887 79999999999999999999999998


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus        81 ~   81 (175)
T d1cdoa2          81 N   81 (175)
T ss_dssp             G
T ss_pred             C
Confidence            5

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.61  E-value=1.7e-15  Score=108.53  Aligned_cols=79  Identities=15%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ++++||++++++.|+|+++.+.+++++|++|+|+|+ |++|.+++++++.+|+ +|++++++++|++.++++|+++++|+
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~   80 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEec
Confidence            467899999999999999988999999999999998 8999999999999986 89999999999999999999999987


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      .
T Consensus        81 ~   81 (176)
T d2jhfa2          81 Q   81 (176)
T ss_dssp             G
T ss_pred             C
Confidence            4

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=1.8e-15  Score=107.81  Aligned_cols=81  Identities=20%  Similarity=0.265  Sum_probs=75.6

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +|+.|||+++++++|||+++ +..+++++++++|+|++|.+|++++|+++++|+ +|+++..+++|+++++++|+++++|
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            57899999999999999999 668899999999999889999999999999996 8999999999999999999999998


Q ss_pred             CCC
Q 029425          191 FGY  193 (193)
Q Consensus       191 ~~~  193 (193)
                      +++
T Consensus        80 ~~~   82 (170)
T d1jvba2          80 ASM   82 (170)
T ss_dssp             TTT
T ss_pred             cCC
Confidence            763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.57  E-value=5.1e-15  Score=105.88  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             CHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +++.++++++.+.|+|+++.+..++++|++|+|+|+ |.+|++++|+++.+|+ ++++++.+++|+++++++|+++++|+
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            346788999999999999888899999999999997 9999999999999998 55677889999999999999999998


Q ss_pred             CC
Q 029425          192 GY  193 (193)
Q Consensus       192 ~~  193 (193)
                      ++
T Consensus        81 ~~   82 (174)
T d1f8fa2          81 KT   82 (174)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.55  E-value=1.4e-14  Score=103.39  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=72.2

Q ss_pred             CHHhHccCcchHHHHHHHHHHhc-CCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          113 SLKDAAAFPEVACTVWSTVFMTS-HLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       113 ~~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      .+.++|+++++++|+|+++.+.. .+++|++|+|+|+ |.+|++++|+++.+|+ +|++++++++|+++++++|+++++|
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~   83 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVD   83 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeec
Confidence            46788999999999999997766 4799999999997 9999999999999997 7788888999999999999999999


Q ss_pred             CCC
Q 029425          191 FGY  193 (193)
Q Consensus       191 ~~~  193 (193)
                      +++
T Consensus        84 ~~~   86 (172)
T d1h2ba2          84 ARR   86 (172)
T ss_dssp             TTS
T ss_pred             Ccc
Confidence            864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.55  E-value=1.7e-14  Score=102.61  Aligned_cols=78  Identities=23%  Similarity=0.245  Sum_probs=69.9

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      +|+++|| +..++.++|+++ +..++++|++++|+|+ |.+|++++|+++.+|++|++++++++|+++++++|++.++++
T Consensus         1 VS~e~Aa-l~ePla~a~~a~-~~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGA-LLEPLSVGVHAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHH-THHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHH-HHHHHHHHHHHH-HHhCCCCCCEEEEEcc-cccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEec
Confidence            4678877 457888999999 6678999999999985 999999999999999999999999999999999999988765


Q ss_pred             C
Q 029425          192 G  192 (193)
Q Consensus       192 ~  192 (193)
                      +
T Consensus        78 ~   78 (170)
T d1e3ja2          78 D   78 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=9.5e-15  Score=105.64  Aligned_cols=81  Identities=20%  Similarity=0.279  Sum_probs=67.4

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCC--CeEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHH-hhcCCcE
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPG--ESFLVHGGSSGIGTFAIQMGKCQGVR-VFVTAGLATRFILC-QPFNIRV  187 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~--~~vli~ga~g~~G~~~i~~~~~~g~~-v~~~~~~~~~~~~~-~~~G~~~  187 (193)
                      +|+.+. +++++++|||++|+...++++|  ++|||+||+|++|++++|+|+.+|++ |+.+++++++...+ +++|+++
T Consensus         2 ~~~~~g-alg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLG-AIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGT-TTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHH-HhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            444554 4788999999999999999988  88999999999999999999999995 55566666665545 5799999


Q ss_pred             EecCCC
Q 029425          188 FIGFGY  193 (193)
Q Consensus       188 ~~~~~~  193 (193)
                      ++||++
T Consensus        81 vi~~~~   86 (187)
T d1vj1a2          81 AVNYKT   86 (187)
T ss_dssp             EEETTS
T ss_pred             Eeeccc
Confidence            999974

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.53  E-value=2.7e-15  Score=106.56  Aligned_cols=71  Identities=18%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             chHHHHHHH---HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          122 EVACTVWST---VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       122 ~~~~~a~~~---l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++++|||.+   |.+.+..+++++|||+|++|++|.+++|+|+.+|++|+.++++++|.++++++|+++++||+
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~   76 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISRE   76 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHH
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEecc
Confidence            345677644   55556677888999999999999999999999999999999999999999999999999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-14  Score=102.39  Aligned_cols=78  Identities=22%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             CCHHhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEec
Q 029425          112 VSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       112 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      +|+++|| +..++.++|+++ ++.++++|++|+|+|+ |.+|++++|+++.+|+ +|++++++++|++.++++|++++++
T Consensus         1 vS~e~Aa-l~epla~a~~a~-~~~~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~   77 (171)
T d1pl8a2           1 VTFEEGA-LIEPLSVGIHAC-RRGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQ   77 (171)
T ss_dssp             SCHHHHH-HHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHH-HHHHHHHHHHHH-HHhCCCCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccccc
Confidence            4678887 447888999998 6789999999999997 9999999999999999 7999999999999999999999998


Q ss_pred             CC
Q 029425          191 FG  192 (193)
Q Consensus       191 ~~  192 (193)
                      ++
T Consensus        78 ~~   79 (171)
T d1pl8a2          78 IS   79 (171)
T ss_dssp             CS
T ss_pred             cc
Confidence            75

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.49  E-value=8.2e-14  Score=101.26  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             HhHccCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          115 KDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       115 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      ++.+++..++.|+|+++ +.+++++|++|+|+|+ |.+|++++++++.+|+ +|++++.+++|++.++++|+++++|+.
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~   78 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSL   78 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTS
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCC
Confidence            56778899999999998 6799999999999997 9999999999999998 899999999999999999999999875

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.66  E-value=5.3e-05  Score=52.88  Aligned_cols=49  Identities=24%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVF  188 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~  188 (193)
                      +..+++|+|+ |..|+.+++.|+.+|++|.+++.+.+++++++++|...+
T Consensus        28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i   76 (183)
T d1l7da1          28 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI   76 (183)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceE
Confidence            3568999998 999999999999999999999999999999999987443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.52  E-value=9.8e-05  Score=52.02  Aligned_cols=43  Identities=14%  Similarity=0.196  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      +|++++|+|++|++|..+++.+...|++|+++.++.++.+.+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~   64 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA   64 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHH
Confidence            6899999999999999999999999999999999998876653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00012  Score=54.36  Aligned_cols=43  Identities=28%  Similarity=0.272  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      +|+++||+||++++|.+.+..+...|++|+++.+++++++.+.
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV   55 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5799999999999999999999999999999999999887663

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00029  Score=51.49  Aligned_cols=47  Identities=23%  Similarity=0.257  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNI  185 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~  185 (193)
                      .|+++||+|+++++|.+.++.+...|++|+++.+++++++.+.+ ++.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~   53 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG   53 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC
Confidence            58999999999999999999999999999999999998876653 443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0004  Score=50.79  Aligned_cols=42  Identities=17%  Similarity=0.122  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .|++++|+|+++++|...+..+...|++|+++.+++++++.+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~   47 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEET   47 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            589999999999999998888888999999999999987655

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0004  Score=51.14  Aligned_cols=42  Identities=26%  Similarity=0.208  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +++++||+|+++++|.+.+..+...|++|+++.+++++++.+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~   50 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEEL   50 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            478999999999999999999999999999999998887664

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.16  E-value=0.00039  Score=51.99  Aligned_cols=42  Identities=14%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +|+++||+|+++++|.+.+..+...|++|+++.+++++.+.+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~   65 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKAT   65 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            478999999999999999999999999999999998876543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.16  E-value=0.00051  Score=47.08  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=40.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPF  183 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~  183 (193)
                      +..+++|+|+ |..|+.+++.|+.+|++|.+++.+.++++++++.
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~   74 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL   74 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh
Confidence            4578999998 9999999999999999999999999999988764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.14  E-value=0.00039  Score=52.99  Aligned_cols=45  Identities=22%  Similarity=0.208  Sum_probs=39.3

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      -+++|++|||+|++|-+|..++..+...|++|++++|+.++...+
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            467899999999999999999998888899999999987766544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.11  E-value=0.00038  Score=51.33  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +|+++||+|+++++|.+.++.+...|++|+++.+++++++.+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~   48 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNEC   48 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            589999999999999999999999999999999998887655

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.10  E-value=0.00051  Score=50.60  Aligned_cols=42  Identities=29%  Similarity=0.390  Sum_probs=38.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +|+++||+|+++++|.+.++.+...|++|++..+++++++.+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~   48 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDC   48 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            588999999999999999999999999999999998887654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00037  Score=51.25  Aligned_cols=48  Identities=21%  Similarity=0.182  Sum_probs=40.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH----hhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC----QPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~----~~~G~~  186 (193)
                      +|+++||+|+++++|.+.++.+...|++|+++.+++++++.+    ++.|..
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~   61 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ   61 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc
Confidence            589999999999999999999999999999999998877554    445543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00068  Score=50.94  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +|+++||+|+++++|.+.++.+...|++|+++.+++++++.+
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~   52 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSA   52 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            689999999999999999999999999999999998877544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.00  E-value=0.00049  Score=50.65  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +|+++||+|+++++|.+.++.+...|++|+++.+++++++.+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~   49 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEV   49 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            478999999999999999999999999999999998876443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0026  Score=43.51  Aligned_cols=52  Identities=19%  Similarity=0.113  Sum_probs=42.6

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+|....-..++++++|.|+ |+.+.+++..+..+|++++++.|+.++.+.+.
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELA   58 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             HHHHHcCCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence            45645544467899999997 99999999999999999999999998876653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.90  E-value=0.0013  Score=48.56  Aligned_cols=49  Identities=20%  Similarity=0.161  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc-chHH----HHhhcCCcE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA-TRFI----LCQPFNIRV  187 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~-~~~~----~~~~~G~~~  187 (193)
                      +|+++||+|+++++|.+.++.+...|++|++..++. +..+    .+++.|.+.
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~   70 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDA   70 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCce
Confidence            478999999999999999999999999999987764 3333    344566543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.87  E-value=0.00081  Score=49.21  Aligned_cols=48  Identities=19%  Similarity=0.162  Sum_probs=40.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH----hhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC----QPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~----~~~G~~  186 (193)
                      .++++||+|+++++|.+.++.+...|++|+++.+++++++.+    ++.|..
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~   60 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE   60 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence            367899999999999999999989999999999998877544    445543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.79  E-value=0.0015  Score=47.98  Aligned_cols=48  Identities=15%  Similarity=0.124  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc-hH----HHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT-RF----ILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~-~~----~~~~~~G~~  186 (193)
                      +|++++|+|+++++|.+.++.+...|++|+++.++.+ +.    +.+++.|.+
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~   58 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE   58 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCc
Confidence            4789999999999999999999999999999998754 33    334556654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.79  E-value=0.00087  Score=49.01  Aligned_cols=40  Identities=20%  Similarity=0.395  Sum_probs=34.0

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCc
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLA  174 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~  174 (193)
                      ..++|+.++||+|+++++|...+..+...|+ .++++.|+.
T Consensus         4 ~~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           4 DEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CCCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             cccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3578999999999999999999988888899 577777653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.0035  Score=42.77  Aligned_cols=52  Identities=17%  Similarity=0.236  Sum_probs=43.2

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh-cCC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP-FNI  185 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~-~G~  185 (193)
                      +..++.++.+|+|.|+ |+.+.+++..++..|+ ++.++.|+.++.+.+.+ ++.
T Consensus        10 ~~~~~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~   63 (167)
T d1npya1          10 EKYHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGY   63 (167)
T ss_dssp             HHTTCCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTC
T ss_pred             HHcCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhh
Confidence            4556667889999997 9999999999999998 79999999998877753 443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.70  E-value=0.0018  Score=47.26  Aligned_cols=42  Identities=19%  Similarity=0.098  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          139 PGESFLVHGGSS--GIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       139 ~~~~vli~ga~g--~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      +|+++||+||+|  ++|.+.++.+...|++|++..++++..+.+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~   50 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA   50 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH
Confidence            578999999977  799999998888999999999887655444

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.65  E-value=0.00061  Score=49.52  Aligned_cols=40  Identities=33%  Similarity=0.281  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFI  178 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~  178 (193)
                      +|+++||+|+++++|.+.++.+...|++|+++.+++++.+
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            5789999999999999999999999999999998776554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.63  E-value=0.0017  Score=42.41  Aligned_cols=47  Identities=15%  Similarity=0.126  Sum_probs=41.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      +++|.|. |.+|..+++.+...|.+|++++.++++.+.+++.|...++
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~   48 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVI   48 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEE
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCccee
Confidence            5788887 9999999999999999999999999999999988875443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0038  Score=38.21  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ++++|+|.|. |..|+++++++...|++|++.+..++
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4678999997 99999999999999999999998554

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.39  E-value=0.0038  Score=44.00  Aligned_cols=47  Identities=17%  Similarity=0.233  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~  186 (193)
                      .|.+|.|.|- |.+|..+.+.+...|++|++.+.+.++......+|+.
T Consensus        26 ~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~   72 (201)
T d1c1da1          26 DGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT   72 (201)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccc
Confidence            6789999996 9999999999999999999999988888888888864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0041  Score=39.55  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=32.5

Q ss_pred             CCCC-CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          137 LSPG-ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~-~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +.++ .+|.|.|+ |.+|.+.++.++.+|.++++.+.+++
T Consensus         7 ~~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            3444 46999997 99999999999999999999997655

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.23  E-value=0.0034  Score=47.46  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+++|||+|++|-+|..+++.+...|.+|++++++..
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            3689999999999999999999999999999998665

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.10  E-value=0.011  Score=38.38  Aligned_cols=45  Identities=9%  Similarity=0.005  Sum_probs=39.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCcE
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIRV  187 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~~  187 (193)
                      .|+|.|+ |.+|..+++.+...|.+|++++.++++.+.+++ +|...
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~v   47 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALV   47 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEE
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhh
Confidence            5899997 999999999999999999999999999988865 67643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.06  E-value=0.009  Score=44.66  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      +|+++||+|+++++|.+.++.+...|++|++..++.
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            478999999999999999999999999999986543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.04  E-value=0.016  Score=39.06  Aligned_cols=47  Identities=21%  Similarity=0.236  Sum_probs=39.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHH-HHhhcCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFI-LCQPFNI  185 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~-~~~~~G~  185 (193)
                      -.+.+++|.|+ |.+|..+++.+...|+ +++++.|+.++.+ +++++|.
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~   70 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG   70 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc
Confidence            36789999998 9999999999999998 6999999988775 4455774

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.96  E-value=0.015  Score=39.62  Aligned_cols=51  Identities=10%  Similarity=0.040  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      +|.......++++++|.|+ |+.+.+++..+...+.+++++.|+.++.+.+.
T Consensus         8 ~l~~~~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~   58 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELA   58 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             HHHHcCCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHH
Confidence            4433333457889999997 99999988888777789999999998877663

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.88  E-value=0.027  Score=35.66  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=36.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +.....++++++|.|+ |.+|.=.+..++.+|.+|.++.+.+.
T Consensus        15 ~~l~~~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          15 EELDYEPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             HHCCSCCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             HHHhhCCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            4456678899999998 99999999999999999999998654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0062  Score=36.04  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ++|.|.|+ |.+|.+.++.++.+|.++.+.+..++
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            47899997 99999999999999999999997654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.49  E-value=0.032  Score=36.49  Aligned_cols=51  Identities=16%  Similarity=0.161  Sum_probs=41.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          142 SFLVHGGSSGIGTFAIQMGKC-QGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~-~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|.|.|++|.+|...++.... .++++.......+....+...++|.+||+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHTTTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhccccCCEEEEcc
Confidence            588999999999998888766 568888777666667777778999999975

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.045  Score=37.43  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHH
Q 029425          129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFIL  179 (193)
Q Consensus       129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~  179 (193)
                      .++.....--.+.+++|.|+ |+.+.+++..+...|+ +++++.|+.++.+.
T Consensus         7 ~~l~~~~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~   57 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDK   57 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHH
T ss_pred             HHHHHcCCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHH
Confidence            34533332235789999997 9999999988888998 78899988776543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.37  E-value=0.011  Score=43.55  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSS--GIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g--~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +|+++||+|++|  ++|.+.++.+...|++|++..+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            578999999876  8999999999999999999887654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.12  E-value=0.041  Score=37.43  Aligned_cols=50  Identities=4%  Similarity=-0.037  Sum_probs=37.6

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHH
Q 029425          129 STVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILC  180 (193)
Q Consensus       129 ~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~  180 (193)
                      .+|.....--++++++|.|+ |+.+.+++..+...| +++++.|+.++.+.+
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHH
T ss_pred             HHHHHhCCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHH
Confidence            34544433346789999997 999998877776555 999999998887654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.95  E-value=0.049  Score=33.29  Aligned_cols=52  Identities=10%  Similarity=0.049  Sum_probs=41.0

Q ss_pred             CCCCCeEEEEcCCchHHHHH-HHHHHHCCCEEEEEeCCc-chHHHHhhcCCcEEe
Q 029425          137 LSPGESFLVHGGSSGIGTFA-IQMGKCQGVRVFVTAGLA-TRFILCQPFNIRVFI  189 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~-i~~~~~~g~~v~~~~~~~-~~~~~~~~~G~~~~~  189 (193)
                      .+..+++.+.|. |+.|+.+ +++++..|++|...+... ...+.+++.|.....
T Consensus         5 ~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~   58 (96)
T d1p3da1           5 MRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYI   58 (96)
T ss_dssp             CTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEE
T ss_pred             chhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEE
Confidence            456688999997 9999776 789999999999999863 355777788986544

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.018  Score=40.87  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~  175 (193)
                      +.+|||+||+|.+|..+++.+...|.  +|++++|++.
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            46899999999999999998887775  8999998554

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.76  E-value=0.022  Score=42.09  Aligned_cols=51  Identities=20%  Similarity=0.128  Sum_probs=43.9

Q ss_pred             HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      -+.+..++++|++||=+|  .+.|..++.+++..|++|..++-|+++.+++++
T Consensus        53 ~~~~~l~l~~G~~VLDiG--CG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          53 LALGKLGLQPGMTLLDVG--CGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             HHHTTTTCCTTCEEEEET--CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEec--CcchHHHHHHHhcCCcceEEEeccHHHHHHHHH
Confidence            344678899999999998  567888999999999999999999998887754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.059  Score=33.93  Aligned_cols=35  Identities=17%  Similarity=0.075  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .++++|.|+ |.+|.-+++.++.+|.+|.++.+.+.
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence            468999998 99999999999999999999998653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.73  E-value=0.083  Score=33.13  Aligned_cols=36  Identities=25%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..++++|.|+ |.+|.-+++.+..+|.+|.++.+.+.
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            3478999998 99999999999999999999998665

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.69  E-value=0.05  Score=35.83  Aligned_cols=50  Identities=14%  Similarity=0.120  Sum_probs=42.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      ++|.|+|+.|.+|......++..|.+|.+.+++.+........+++.++.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~   59 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIV   59 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchhhhhcccccc
Confidence            58999996699999999999999999999999888777666677776654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.60  E-value=0.083  Score=31.74  Aligned_cols=47  Identities=21%  Similarity=0.230  Sum_probs=37.3

Q ss_pred             eEEEEcCCchHHHH-HHHHHHHCCCEEEEEeCCcc-hHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTF-AIQMGKCQGVRVFVTAGLAT-RFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~-~i~~~~~~g~~v~~~~~~~~-~~~~~~~~G~~~~~  189 (193)
                      +|.+.|- |++|+. ++++++..|+.|...+..+. ..+.|+++|+....
T Consensus         3 ~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~   51 (89)
T d1j6ua1           3 KIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFV   51 (89)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEES
T ss_pred             EEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEe
Confidence            5777786 999986 46888899999999998764 55778889986543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.56  E-value=0.058  Score=35.64  Aligned_cols=44  Identities=14%  Similarity=0.236  Sum_probs=35.1

Q ss_pred             eEEEEcCCchHHHHHHH-HHHHCCCEEEEEeCCcchHHHHhh-cCCc
Q 029425          142 SFLVHGGSSGIGTFAIQ-MGKCQGVRVFVTAGLATRFILCQP-FNIR  186 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~-~~~~~g~~v~~~~~~~~~~~~~~~-~G~~  186 (193)
                      +|.++|+ |.+|.+.++ ++++-+.++++..+++++.+.+++ +|+.
T Consensus         2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~   47 (152)
T d1yqga2           2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE   47 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc
Confidence            5788897 999998877 555544799999999999988865 6764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.51  E-value=0.07  Score=33.73  Aligned_cols=36  Identities=19%  Similarity=0.055  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..++++|.|+ |.+|.=.++.+..+|.+|.++.+++.
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence            3478999998 99999999999999999999997654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.47  E-value=0.04  Score=39.34  Aligned_cols=47  Identities=13%  Similarity=0.065  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh-cCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP-FNIR  186 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~G~~  186 (193)
                      .|.+++|.|- |.+|..+++++..+|+++++++.+..+.+.+.. .|+.
T Consensus        38 ~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          38 EGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc
Confidence            6889999996 999999999999999999999988888766653 5653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.13  Score=34.50  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=44.1

Q ss_pred             HHHHHHHHhcC-CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          126 TVWSTVFMTSH-LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       126 ~a~~~l~~~~~-~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      +.+.++.+..+ .=.|++++|.| .|-+|..+++.++.+|++|+++...+.+.-.+.--|+
T Consensus         9 S~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~   68 (163)
T d1li4a1           9 SLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGY   68 (163)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             hHHHHHHHHhCceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhhcCce
Confidence            34444444433 45899999999 5999999999999999999999987765544433454

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.34  E-value=0.088  Score=33.45  Aligned_cols=43  Identities=21%  Similarity=0.069  Sum_probs=34.9

Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      +.....-.++++++|.|+ |.+|.-+++.+..+|.+|.++.+.+
T Consensus        21 i~~~~~~~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             HHHHHTCTTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             HHHHhhccCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence            334444456789999998 9999999999999999999997754

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=94.30  E-value=0.13  Score=37.56  Aligned_cols=56  Identities=13%  Similarity=0.263  Sum_probs=42.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +.+..+++.++ +..++|+.|+++...++.+|.+.+++..   ++.|.+.++.+|+..++
T Consensus        53 ~~g~~~~~~~v-v~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  111 (292)
T d2bhsa1          53 KRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELIL  111 (292)
T ss_dssp             HTTSCCTTSEE-EEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEE
T ss_pred             HhCCcCCCcee-eeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcce
Confidence            44555656554 4455699999999999999998777665   66688888999997544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.28  E-value=0.048  Score=34.78  Aligned_cols=52  Identities=13%  Similarity=-0.027  Sum_probs=40.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch------------HHHHhhcCCcEEec
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR------------FILCQPFNIRVFIG  190 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~------------~~~~~~~G~~~~~~  190 (193)
                      +..++++|.|+ |.+|+=.++.+..+|.+|.++.+++.-            .+.+++.|.....+
T Consensus        23 ~~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~   86 (123)
T d1dxla2          23 EIPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLK   86 (123)
T ss_dssp             SCCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECS
T ss_pred             ccCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcC
Confidence            34578999998 999999999999999999999886653            23445667655443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.059  Score=34.31  Aligned_cols=50  Identities=14%  Similarity=0.038  Sum_probs=39.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch------------HHHHhhcCCcEEec
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR------------FILCQPFNIRVFIG  190 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~------------~~~~~~~G~~~~~~  190 (193)
                      .++++|.|+ |.+|.=+++++..+|.+|.++.+.+.=            .+.+++.|.+...|
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~   84 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLS   84 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeC
Confidence            478999998 999999999999999999999876531            24445677765544

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.22  E-value=0.039  Score=41.59  Aligned_cols=36  Identities=17%  Similarity=0.090  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      ...-+|||+|++|-+|..++..+...|.+|+++++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            456789999999999999999999999999998753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.22  E-value=0.068  Score=33.74  Aligned_cols=38  Identities=16%  Similarity=0.161  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .++..++++|.|+ |.+|.-++..+..+|.+|.++.+++
T Consensus        18 ~l~~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             ccCCCCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            3455689999998 9999999999999999999999854

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.19  E-value=0.13  Score=39.52  Aligned_cols=54  Identities=17%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEec
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFIG  190 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~~  190 (193)
                      +++++.+ +|..++|+.|.++..+++.+|.+.+++..   +++|.+.++.+|+..+..
T Consensus       140 ~~~~g~~-VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         140 RVEKGSL-VADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             TSCTTCE-EEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCCE-EEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeec
Confidence            4666765 45566799999999999999998777775   456778889999976654

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.18  E-value=0.067  Score=35.51  Aligned_cols=50  Identities=12%  Similarity=0.073  Sum_probs=38.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchH---HHHhhcCCcEEec
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRF---ILCQPFNIRVFIG  190 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~---~~~~~~G~~~~~~  190 (193)
                      ++|.|.|++|.+|..+.++.+..  .++|+....+.+-.   +.++++....++-
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i   57 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVI   57 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhcccccee
Confidence            68999999999999999999986  47888777665533   4445677776653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.14  E-value=0.064  Score=34.11  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ++++++++|.|+ |.+|.-++..++.+|.+|.++.+++.
T Consensus        27 ~~~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             hhcCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            567799999998 99999999999999999999988654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.06  E-value=0.051  Score=34.06  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .|.+|+|.|+ |.+|..-++.+...|++|+++....
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4789999998 9999999999999999998887643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.03  E-value=0.038  Score=41.32  Aligned_cols=33  Identities=15%  Similarity=0.100  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      -+++||+|++|.+|..++..+...|.+|+++++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            468999999999999999999999999999875

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.18  Score=38.14  Aligned_cols=56  Identities=13%  Similarity=0.213  Sum_probs=43.9

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +.+.++++.+|+. .++|+.|.++...++.+|.+.+++..   +++|.+.++.+|+..+.
T Consensus        90 ~~g~~~~~~~vv~-aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          90 RDGTLKPGDTIIE-PTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             HHTCSCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             HcCCcccCceEEE-ecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            4556666666555 55699999999999999998777765   55688889999997554

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.93  E-value=0.044  Score=37.19  Aligned_cols=47  Identities=15%  Similarity=0.013  Sum_probs=39.6

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....++|+.+||..|+  +.|..+..+|+. |++|+.++.|++.++.+++
T Consensus        14 ~~l~~~~~~rvLd~GC--G~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          14 SSLNVVPGARVLVPLC--GKSQDMSWLSGQ-GYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             HHHCCCTTCEEEETTT--CCSHHHHHHHHH-CCEEEEEEECHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEecC--cCCHHHHHHHHc-CCceEeecccHHHHHHHHH
Confidence            3446889999999984  567888888875 9999999999999988875

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.066  Score=36.61  Aligned_cols=37  Identities=14%  Similarity=0.093  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      ...+++|+|+|+ |..|+.++..+...|.+|.++.+.+
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            356789999998 9999999999999999999999864

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.56  E-value=0.17  Score=37.60  Aligned_cols=57  Identities=21%  Similarity=0.349  Sum_probs=45.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.++++...+|..++|+.|.++...++.+|.+.+++..   +..|.+.++.+|+..++
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~  116 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVL  116 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEE
Confidence            4566677777777788899999999999999998766664   56688888999997554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=93.48  E-value=0.61  Score=33.60  Aligned_cols=48  Identities=19%  Similarity=0.303  Sum_probs=40.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~  182 (193)
                      ...+++||++||=.|+  +.|..+..+|+..+  .+|+.++.+++..+.+++
T Consensus        97 ~~l~i~pG~~VLDiG~--GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          97 MMLDVKEGDRIIDTGV--GSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HhhCCCCCCEEEECCC--CCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            5788999999999884  44888889999875  699999999998887754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.45  E-value=0.12  Score=33.23  Aligned_cols=40  Identities=20%  Similarity=0.186  Sum_probs=34.6

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      ..++++++++|.|+ |.+|.-++..++.+|.+|.++.+++.
T Consensus        30 ~~~~~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          30 RQLIADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             HhhccCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence            34567789999998 99999999999999999999998654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.30  E-value=0.077  Score=37.39  Aligned_cols=63  Identities=14%  Similarity=0.199  Sum_probs=45.3

Q ss_pred             cchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh----hcCCcE
Q 029425          121 PEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ----PFNIRV  187 (193)
Q Consensus       121 ~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~----~~G~~~  187 (193)
                      ..+...|. .+ ...+++++++||-+|  ++.|..++.+++..|.+|+.+...++-.+.++    ++|.+.
T Consensus        62 s~P~~~a~-ml-~~L~l~~g~~VLeIG--sGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~n  128 (215)
T d1jg1a_          62 SAPHMVAI-ML-EIANLKPGMNILEVG--TGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN  128 (215)
T ss_dssp             CCHHHHHH-HH-HHHTCCTTCCEEEEC--CTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             hhhhhHHH-HH-HhhccCccceEEEec--CCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCce
Confidence            33444443 23 567899999999998  56688888888877888999998877555554    456553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.26  E-value=0.061  Score=37.43  Aligned_cols=36  Identities=25%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+.++.|.|. |.+|..++++++.+|++|+..++...
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceeeeeeec-ccccccccccccccceeeeccCCccc
Confidence            3679999996 99999999999999999999987544

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.17  E-value=0.081  Score=36.22  Aligned_cols=36  Identities=25%  Similarity=0.169  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|+|. |.+|...+++++.+|++|+...++..
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEecc-ccccccceeeeecccccccccccccc
Confidence            4789999997 99999999999999999999998654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.16  E-value=0.18  Score=36.13  Aligned_cols=35  Identities=14%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      -.|.+|+|.|- |.+|..+++++..+|++|+.+..+
T Consensus        29 l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence            36899999996 999999999999999999877743

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.14  E-value=0.091  Score=37.06  Aligned_cols=38  Identities=21%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+..++|+|+|+ |..|+.++..++..|.+|.++..+++
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeeccc
Confidence            356789999998 99999999999999999999987654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.14  E-value=0.21  Score=31.83  Aligned_cols=59  Identities=7%  Similarity=0.170  Sum_probs=44.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ...+++.-+.+++.-..-..-..+.++++.+|. ++++.+.+++..+.++++|++.++++
T Consensus        59 ~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p  118 (132)
T d1lssa_          59 EDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSP  118 (132)
T ss_dssp             HHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECH
T ss_pred             hhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECH
Confidence            456666666666543334445677888899987 68888888888999999999999986

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.5  Score=31.74  Aligned_cols=70  Identities=11%  Similarity=-0.015  Sum_probs=48.7

Q ss_pred             cCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       119 ~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      .+|+.....+..|....--=.|+++.|.|.+..+|.-+..++...|++|+........+... -..+|.++
T Consensus        18 ~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~-~~~aDivi   87 (170)
T d1a4ia1          18 FIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEE-VNKGDILV   87 (170)
T ss_dssp             CCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHH-HTTCSEEE
T ss_pred             CCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHH-Hhhccchh
Confidence            34555555555554333334789999999999999999999999999999988755544322 23456555

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.09  E-value=0.093  Score=36.41  Aligned_cols=36  Identities=19%  Similarity=0.184  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|+|- |.+|..++++++.+|++|+...+...
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcccccccCcccc
Confidence            3789999996 99999999999999999999986544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.06  E-value=0.093  Score=38.45  Aligned_cols=53  Identities=21%  Similarity=0.171  Sum_probs=42.4

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       128 ~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      +.-+....++++|++||=+|+  +.|..+..+++..|++|+.++-++++.+++++
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGC--G~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~   93 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGC--GWGTTMRRAVERFDVNVIGLTLSKNQHARCEQ   93 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEecC--CchHHHHHHHHhCceeEEEecchHHHHHHHHH
Confidence            334556678999999999985  44566777888899999999999999877754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.05  E-value=0.15  Score=32.14  Aligned_cols=37  Identities=19%  Similarity=0.039  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +.+.+++|.|+ |.+|.-++..+..+|.+|.++.+++.
T Consensus        30 ~~~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          30 ENSGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HHHSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             hcCCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence            34578999998 99999999999999999999988654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.18  Score=33.01  Aligned_cols=48  Identities=23%  Similarity=0.149  Sum_probs=36.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch----HHHHhhcCCcE
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR----FILCQPFNIRV  187 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~----~~~~~~~G~~~  187 (193)
                      ..+.++|.|. |.+|..+++.++..|.+++++...+++    .+.++..|+..
T Consensus         2 ~knHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~v   53 (153)
T d1id1a_           2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADV   53 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEE
Confidence            3467999997 999999999999999999999877654    33333456543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.92  E-value=0.087  Score=36.44  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .|.++.|.|. |.+|..+++.++.+|++|+..++...
T Consensus        48 ~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          48 RGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             eCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence            4789999997 99999999999999999999987543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.75  E-value=0.1  Score=33.57  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=35.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecCC
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGFG  192 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~~  192 (193)
                      +|.|.|++|.+|+...+++...+.+++........ +.+  -.+|.+||+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-~~~--~~~DVvIDFS   49 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-EEL--DSPDVVIDFS   49 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-EEC--SCCSEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-HHh--ccCCEEEEec
Confidence            58899999999999999999999987766533221 111  3578888874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.61  E-value=0.086  Score=38.36  Aligned_cols=38  Identities=18%  Similarity=0.086  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      .....++|+|+|| |..|++++..+...|.+|.++.+++
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3455679999998 9999999998888999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.59  E-value=0.11  Score=32.94  Aligned_cols=33  Identities=21%  Similarity=0.056  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGL  173 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~  173 (193)
                      .++++|.|+ |.+|.=+++.++++|.+|.++.++
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            467999998 999999999999999999998864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.46  E-value=0.08  Score=34.80  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .|+++||.|+ |.+|..-+..+...|++|+++..
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence            5789999998 99999999999999999998864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.19  Score=35.56  Aligned_cols=53  Identities=17%  Similarity=0.159  Sum_probs=42.7

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       128 ~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      +..+....+++||++||=+|  .+.|..+..+++..|++|+.++.+++..+.+++
T Consensus        22 ~~~l~~~~~l~pg~~VLDiG--CG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLG--SGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEET--CTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEc--CCCCHHHHHHHHhcCCEEEEEecccchhhHHHH
Confidence            34466778999999998887  455677888888899999999999988876654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.27  E-value=0.15  Score=37.57  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=41.5

Q ss_pred             HHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          130 TVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       130 ~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      -+.+..++++|++||=+|  .+.|..+..+++..|++|+.++-++++.+.++
T Consensus        52 ~~~~~l~l~~G~~VLDiG--CG~G~~~~~~a~~~g~~v~git~s~~q~~~a~  101 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIG--CGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK  101 (291)
T ss_dssp             HHHHTTCCCTTCEEEEET--CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEec--CcchHHHHHHHHhcCcceeeccchHHHHHHHH
Confidence            344778899999999998  46677788999999999999999999876654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.23  E-value=0.051  Score=36.03  Aligned_cols=45  Identities=9%  Similarity=0.000  Sum_probs=36.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh-hcCCcE
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ-PFNIRV  187 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~-~~G~~~  187 (193)
                      +|.++|+ |.+|.+.+.-+...|.++++..++.++.+.+. ++|+..
T Consensus         2 kIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~   47 (152)
T d2ahra2           2 KIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY   47 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB
T ss_pred             EEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceee
Confidence            4778897 99999988877777899999999999888774 567644

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.96  E-value=0.14  Score=32.63  Aligned_cols=37  Identities=22%  Similarity=0.153  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      +..++++|.|+ |.+|.=+++..+.+|.+|.++.+.+.
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            44588999998 99999999999999999999987653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.88  E-value=0.15  Score=31.86  Aligned_cols=35  Identities=23%  Similarity=0.158  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .++++|.|+ |.+|.-+++.++.+|.+|.++.+.+.
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence            378999998 99999999999999999999988654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.19  Score=31.87  Aligned_cols=35  Identities=9%  Similarity=-0.007  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .++++|.|+ |.+|.=++..++++|.+|.++.+++.
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence            368999998 99999999999999999999998653

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.64  E-value=0.26  Score=35.56  Aligned_cols=34  Identities=15%  Similarity=0.107  Sum_probs=30.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      -.|.++.|.|- |.+|..+++.+..+|++|+.+..
T Consensus        34 l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             STTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEec
Confidence            36789999996 99999999999999999987764

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=91.59  E-value=0.35  Score=35.57  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..+.+.++++|+. .++|+.|+++...++..|++.+++..   +..|.+.++.+|+..+.
T Consensus        54 ~~g~~~~~~~vv~-~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          54 KDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             HTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCceeee-ecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEe
Confidence            4455667766555 55699999999999999997666654   45577888889997664

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=91.37  E-value=0.66  Score=31.01  Aligned_cols=59  Identities=15%  Similarity=0.008  Sum_probs=43.1

Q ss_pred             cCcchHHHHHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchH
Q 029425          119 AFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRF  177 (193)
Q Consensus       119 ~~~~~~~~a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~  177 (193)
                      .+|+.....+..|....---.|++++|.|-+..+|.-+..++...|++|+........+
T Consensus        16 ~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l   74 (166)
T d1b0aa1          16 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNL   74 (166)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCH
T ss_pred             CCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchh
Confidence            34445455555554433334689999999999999999999999999998887655433

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.37  E-value=0.24  Score=33.74  Aligned_cols=37  Identities=22%  Similarity=0.142  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcch
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATR  176 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~  176 (193)
                      .+.++.|.|. |.+|...+++++.+|++|+...+...+
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             cceeeeeccc-cchhHHHHHHhhhccceEEeecCCCCh
Confidence            4679999996 999999999999999999999876543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=91.12  E-value=0.25  Score=33.94  Aligned_cols=35  Identities=9%  Similarity=0.009  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      |.++.|+|. |.+|...+++++.+|++++..++...
T Consensus        47 g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          47 NKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             ccceEEeec-ccchHHHHHHHHhhcccccccccccc
Confidence            789999997 99999999999999999999987544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=91.09  E-value=0.23  Score=33.91  Aligned_cols=40  Identities=10%  Similarity=-0.094  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFIL  179 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~  179 (193)
                      .+.++.|.|. |.+|...++.++.+|++|+..++.......
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~   82 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESV   82 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHH
T ss_pred             cccceeeccc-cccchhhhhhhhccCceEEEEeeccccccc
Confidence            4789999996 999999999999999999999976544333

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.03  E-value=0.18  Score=37.08  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG  172 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~  172 (193)
                      .|.+|+|.|- |.+|..+++.+...|++|+.+..
T Consensus        35 ~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            5789999996 99999999999999999998764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.03  E-value=0.27  Score=34.20  Aligned_cols=48  Identities=23%  Similarity=0.156  Sum_probs=39.3

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~  182 (193)
                      ...++++|++||-+|+  +.|..++.+++..|  .+|+.+..+++..+.+++
T Consensus        69 ~~l~l~~g~~VLdiG~--GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          69 EWVGLDKGMRVLEIGG--GTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HhhhccccceEEEecC--ccchhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            6678999999999995  44888888998865  589999998887777654

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.31  Score=36.18  Aligned_cols=62  Identities=6%  Similarity=0.068  Sum_probs=43.4

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          127 VWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       127 a~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +++.+.....-.+..+|+. .++|+.|.++...++..|.+++++..   +.+|.+.++.+|+..++
T Consensus        62 a~~~i~~~~~~~~~~~vv~-assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~  126 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVIT-ASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL  126 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEE-EECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEEC
T ss_pred             HHHHHHHHHHhCCCCeeee-cccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEE
Confidence            4444433333334455555 44699999999999999998777765   45577888899996554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.36  E-value=0.42  Score=31.17  Aligned_cols=47  Identities=11%  Similarity=0.052  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcCCCCCCeEEEE--cCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          126 TVWSTVFMTSHLSPGESFLVH--GGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       126 ~a~~~l~~~~~~~~~~~vli~--ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      |+...|  ..+..+++.++|.  |+ |.+|.-+.+.+...|++|.++.+.+.
T Consensus        27 t~~d~l--~~~~~~~~~vvi~d~gg-g~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          27 TPEQVM--DGKKKIGKRVVILNADT-YFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CHHHHH--HTCSCCCSEEEEEECCC-SSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CHHHHh--cCccccCCceEEEecCC-ChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            556555  3566788888886  65 99999999999999999999998653

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.25  E-value=0.7  Score=33.55  Aligned_cols=55  Identities=15%  Similarity=0.194  Sum_probs=41.4

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEE
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVF  188 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~  188 (193)
                      +.+.++++.+++. .++|+.|.++...++.+|++.+++..   ++.+...++.+|+..+
T Consensus        54 ~~g~~~~~~~vv~-assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~  111 (302)
T d1fcja_          54 KRGVLKPGVELVE-PTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLV  111 (302)
T ss_dssp             HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             HcCCCCCCceEEE-eccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceE
Confidence            4556677766554 55699999999999999987666554   5567788888998654

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=0.4  Score=35.26  Aligned_cols=50  Identities=14%  Similarity=0.072  Sum_probs=39.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      |..-+|..++|+.|.++...++.+|.+.+++..   +++|.+.++.+|+..++
T Consensus        53 g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~v~~  105 (319)
T d1p5ja_          53 GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKV  105 (319)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccccceecccc
Confidence            334566777899999999999999998777765   44577888889986554

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.47  Score=33.27  Aligned_cols=44  Identities=20%  Similarity=0.193  Sum_probs=35.9

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHh
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQ  181 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~  181 (193)
                      .+++|++||-.|  ++.|..+..+++..|  .+|+.+..+++-.+.++
T Consensus        73 ~l~~g~~VLdiG--~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          73 QLHEGAKALDVG--SGSGILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             TSCTTCEEEEET--CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEec--CCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            789999999998  566888888888755  58999999888776654

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.61  E-value=0.31  Score=35.57  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=36.6

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ++..++|+.|.++...++.+|.+.+++..   ++.|.+.++.+|+..++
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~  106 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVL  106 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEE
Confidence            66667799999999999999987555554   56688888999996554

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=89.49  E-value=0.3  Score=32.20  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=36.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCcchH---HHHhhcCCcEEec
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQ--GVRVFVTAGLATRF---ILCQPFNIRVFIG  190 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~--g~~v~~~~~~~~~~---~~~~~~G~~~~~~  190 (193)
                      +|.|.|++|.+|..+..+.+..  .++|+....+.+-.   +.++++....++-
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i   56 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVM   56 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEE
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhccccc
Confidence            6899999999999999999986  46888777655433   3334567665543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=89.15  E-value=0.35  Score=34.91  Aligned_cols=50  Identities=20%  Similarity=0.045  Sum_probs=40.6

Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      +.....++++++||=+|+  +.|..+..+++..|++|+.++-++...+.+++
T Consensus        59 l~~~~~l~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGA--GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCC--CCcHHHhhhhccCCcEEEEEeccchhhhhhhc
Confidence            445568899999999884  46778888888889999999999888776654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.65  E-value=0.8  Score=32.35  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=28.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHH-HHCCCEEEEEeC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMG-KCQGVRVFVTAG  172 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~-~~~g~~v~~~~~  172 (193)
                      -.+.++.|.|- |.+|..+.+.+ +..|++++.+..
T Consensus        29 l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          29 PKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeec
Confidence            36889999996 99999999887 578999987764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.4  Score=32.66  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcc
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLAT  175 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~  175 (193)
                      .+.++.|+|- |.+|...+++++.+|++|+...+...
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceEEEEeec-ccchhhhhhhcccccceEeecccccc
Confidence            4679999996 99999999999999999999987543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.37  E-value=0.81  Score=29.61  Aligned_cols=59  Identities=7%  Similarity=0.080  Sum_probs=45.5

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ...+++.-+.+++.-..-..=..++..++.++  .++++.+.+++..+.++++|++.++++
T Consensus        65 ~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p  125 (153)
T d1id1a_          65 KKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSP  125 (153)
T ss_dssp             HHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred             HHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECH
Confidence            55677777777776544455566777787753  489999999999999999999999875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.32  E-value=0.64  Score=30.95  Aligned_cols=49  Identities=20%  Similarity=0.160  Sum_probs=39.0

Q ss_pred             CCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCC
Q 029425          136 HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNI  185 (193)
Q Consensus       136 ~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~  185 (193)
                      -+=.|++++|.|= |-+|.-+++-++.+|++|+++...+-+.=++.--|+
T Consensus        19 ~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf   67 (163)
T d1v8ba1          19 FLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF   67 (163)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC
T ss_pred             ceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCC
Confidence            3468999999984 999999999999999999999987755443333344

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.99  E-value=0.4  Score=33.66  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             cCCCCCCeEEEEcCCchHHHHHHHHHH---HCC----CEEEEEeCCcchHHHHh
Q 029425          135 SHLSPGESFLVHGGSSGIGTFAIQMGK---CQG----VRVFVTAGLATRFILCQ  181 (193)
Q Consensus       135 ~~~~~~~~vli~ga~g~~G~~~i~~~~---~~g----~~v~~~~~~~~~~~~~~  181 (193)
                      ..++++++||..|+  +.|..+..+++   ..|    .+|+.+...++-.+.++
T Consensus        76 ~~l~~g~~VLeIGt--GsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~  127 (223)
T d1r18a_          76 DHLKPGARILDVGS--GSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK  127 (223)
T ss_dssp             TTCCTTCEEEEESC--TTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH
T ss_pred             hccCCCCeEEEecC--CCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHH
Confidence            37899999999985  44555544444   444    48999998877665553

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=87.86  E-value=0.62  Score=32.70  Aligned_cols=47  Identities=17%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ....+++|++||-.|+  +.|..++.+++. +.+|+.+..+++..+.+++
T Consensus        64 ~~L~l~~g~~VLdIG~--GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~  110 (224)
T d1vbfa_          64 DELDLHKGQKVLEIGT--GIGYYTALIAEI-VDKVVSVEINEKMYNYASK  110 (224)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHH-SSEEEEEESCHHHHHHHHH
T ss_pred             HHhhhcccceEEEecC--CCCHHHHHHHHH-hcccccccccHHHHHHHHH
Confidence            5678999999999984  467777777764 6799999999888887765

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=87.71  E-value=0.56  Score=32.62  Aligned_cols=49  Identities=12%  Similarity=0.111  Sum_probs=39.0

Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      |.....+++|++||=.|  .+.|..+..+++. +.+|+.++.|++.++.+++
T Consensus         8 l~~~~~~~~~~rILDiG--cGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~   56 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIG--AGAGHTALAFSPY-VQECIGVDATKEMVEVASS   56 (234)
T ss_dssp             HHHHHTCCTTCEEEEES--CTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeC--CcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhh
Confidence            44677899999999888  4567777778775 6899999999887776643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=87.21  E-value=0.66  Score=30.46  Aligned_cols=39  Identities=10%  Similarity=-0.015  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchH
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRF  177 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~  177 (193)
                      ++..+|.|+|+ |.+|..+..++...+. ++++.+.++++.
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~   44 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMP   44 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence            55678999997 9999888877777674 888888777654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.20  E-value=0.65  Score=30.44  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=28.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGL  173 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~  173 (193)
                      ..+++|+|+|+ |.+|.-++..+.+.|+ .|+++.+.
T Consensus        43 ~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeC
Confidence            34678999998 9999999999899998 47677664

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=86.68  E-value=0.84  Score=28.69  Aligned_cols=58  Identities=14%  Similarity=0.073  Sum_probs=39.8

Q ss_pred             hcCCCCCCeEEEE-cCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          134 TSHLSPGESFLVH-GGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       134 ~~~~~~~~~vli~-ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ..+++.-+.+++. +..-..-..+...++..+. ++++.+.+++..+.++++|++.++++
T Consensus        59 ~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p  118 (134)
T d2hmva1          59 SLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHP  118 (134)
T ss_dssp             HHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECH
T ss_pred             ccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEECh
Confidence            3445555666554 3223334455555666775 88888989999999999999999875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.65  E-value=0.84  Score=35.02  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=42.8

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHhh
Q 029425          128 WSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQP  182 (193)
Q Consensus       128 ~~~l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~~  182 (193)
                      ...+ ...+++++++++=+|  ++.|..+.++|+..|+ +++.++-++...+.+++
T Consensus       206 ~~Il-~~l~Lkpgd~fLDLG--CG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~  258 (406)
T d1u2za_         206 SDVY-QQCQLKKGDTFMDLG--SGVGNCVVQAALECGCALSFGCEIMDDASDLTIL  258 (406)
T ss_dssp             HHHH-HHTTCCTTCEEEEES--CTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHH-HHhCCCCCCEEEeCC--CCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            3344 678899999987777  6889999999999987 89999999887777653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=86.29  E-value=0.92  Score=28.43  Aligned_cols=59  Identities=12%  Similarity=-0.018  Sum_probs=45.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ...++..-+.+++.-..-..-..++..+|.++  .++++.+.+++..+.+++.|++.++++
T Consensus        56 ~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p  116 (129)
T d2fy8a1          56 EKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISP  116 (129)
T ss_dssp             HHTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHHHHHCSEEECH
T ss_pred             HHhhhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHHHCCCCEEECh
Confidence            55677777777776544455566777777764  479999989999999999999999875

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=86.28  E-value=0.79  Score=33.37  Aligned_cols=46  Identities=13%  Similarity=0.088  Sum_probs=36.7

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          144 LVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       144 li~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +|...+|+.|.++...++.+|.+.+++..   ++++...++.+|+..+.
T Consensus        67 vv~aSsGN~g~a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~  115 (310)
T d1ve5a1          67 LLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVD  115 (310)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEEC
T ss_pred             ccccCchhhHHHHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccce
Confidence            45556799999999999999998777765   46688888999996554

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.99  E-value=0.86  Score=33.30  Aligned_cols=48  Identities=8%  Similarity=0.027  Sum_probs=38.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      ..++..++|+.|.++...++.+|.+.+++..   ++++.+.++.+|+..+.
T Consensus        70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~  120 (318)
T d1v71a1          70 AGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIM  120 (318)
T ss_dssp             HCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEE
T ss_pred             ceeeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEe
Confidence            3466677899999999999999997666664   55577888899997554

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=85.90  E-value=0.59  Score=32.20  Aligned_cols=47  Identities=15%  Similarity=0.063  Sum_probs=37.8

Q ss_pred             HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHh
Q 029425          132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQ  181 (193)
Q Consensus       132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~  181 (193)
                      .+..+++++++||=+|+  +.|..+..+++. +++|+.++-+++..+.++
T Consensus         8 l~~~~l~~~~rVLDiGc--G~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~   54 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVAT--GGGHVANAFAPF-VKKVVAFDLTEDILKVAR   54 (231)
T ss_dssp             HHHHTCCSCCEEEEETC--TTCHHHHHHGGG-SSEEEEEESCHHHHHHHH
T ss_pred             HHhcCCCCcCEEEEecc--cCcHHHHHHHHh-CCEEEEEECCHHHHhhhh
Confidence            36688999999999985  467777777755 789999999988777765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.47  Score=33.08  Aligned_cols=47  Identities=9%  Similarity=-0.149  Sum_probs=37.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      .....+++.+||..|+  +.|..+..+++ .|++|+.++-|++..+.+++
T Consensus        39 ~~l~~~~~~rvLd~GC--G~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLC--GKAVEMKWFAD-RGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HHHTTCCSCEEEETTC--TTCTHHHHHHH-TTCEEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCC--CCcHHHHHHHh-CCCcEEEEeCCHHHHHHHHH
Confidence            3456788999999985  44888888876 59999999999998887764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=85.52  E-value=1.1  Score=32.02  Aligned_cols=43  Identities=21%  Similarity=0.212  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      .++|++||=.|+ | .|..++.++ .+|++|+.++.+++..+.+++
T Consensus       118 ~~~g~~VLDiGc-G-sG~l~i~aa-~~g~~V~gvDis~~av~~A~~  160 (254)
T d2nxca1         118 LRPGDKVLDLGT-G-SGVLAIAAE-KLGGKALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETC-T-TSHHHHHHH-HTTCEEEEEESCGGGHHHHHH
T ss_pred             cCccCEEEEccc-c-hhHHHHHHH-hcCCEEEEEECChHHHHHHHH
Confidence            578999998885 3 467776555 468999999999998888764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.51  E-value=0.47  Score=34.35  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=27.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      -|+|+|+ |..|+.+..-+...|++|+++.+.+
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3788897 9999999888888999999998653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=84.96  E-value=0.65  Score=33.16  Aligned_cols=48  Identities=19%  Similarity=0.151  Sum_probs=38.1

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~  182 (193)
                      ...+++||++||=.|+  +.|.++..+|+..|  .+|+.+..+++..+.+++
T Consensus        79 ~~l~i~pG~rVLEiG~--GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGV--GSGNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             --CCCCTTCEEEEECC--TTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEeee--eCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            4678999999999884  44788888888764  589999999998888764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.87  E-value=1.3  Score=27.19  Aligned_cols=53  Identities=13%  Similarity=-0.006  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCC---CEEEEEeCCcchH------------HHHhhcCCcEEecC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQG---VRVFVTAGLATRF------------ILCQPFNIRVFIGF  191 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g---~~v~~~~~~~~~~------------~~~~~~G~~~~~~~  191 (193)
                      +..++++|.|+ |.+|.=++..+..++   .+|.++.+.+.=+            +.+++.|.+...+.
T Consensus        18 ~~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~   85 (117)
T d1aoga2          18 EPPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKE   85 (117)
T ss_dssp             SCCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred             hcCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCC
Confidence            34578999998 999988777766654   4798888754321            33356677655543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.85  E-value=0.88  Score=29.57  Aligned_cols=38  Identities=16%  Similarity=0.240  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcch
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATR  176 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~  176 (193)
                      +.+.+|.|+|+ |.+|..++..+...+.  ++++++..+++
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            45678999997 9999988877777664  79999988776

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.46  E-value=1.3  Score=29.59  Aligned_cols=55  Identities=9%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             HHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEecC
Q 029425          132 FMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIGF  191 (193)
Q Consensus       132 ~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~~  191 (193)
                      ....++++.+.+.| |. +..   =++.|++.|++.+.+.......+.+.+.+++.+++.
T Consensus       147 ~~~~~~~~~~~v~V-GD-s~~---Di~aa~~aGi~~i~v~~g~~~~~~l~~~~pd~vi~~  201 (210)
T d2ah5a1         147 LQTHQLAPEQAIII-GD-TKF---DMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHK  201 (210)
T ss_dssp             HHHTTCCGGGEEEE-ES-SHH---HHHHHHHHTCEEEEESSSSSCHHHHHTTCCSEEESS
T ss_pred             hhhhhcccccceee-cC-CHH---HHHHHHHcCCeEEEEcCCCCCHHHHHhCCCCEEECC
Confidence            36677888776655 76 343   468888889998887655556677788999998864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.86  E-value=1.4  Score=28.66  Aligned_cols=38  Identities=13%  Similarity=0.121  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~  177 (193)
                      |..+|-|.|+ |.+|..+..++...+. ++.+++..+++.
T Consensus         2 p~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            4568999997 9999988877777775 888888777654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.64  E-value=2.6  Score=29.62  Aligned_cols=34  Identities=15%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHH-HHCCCEEEEEeCC
Q 029425          139 PGESFLVHGGSSGIGTFAIQMG-KCQGVRVFVTAGL  173 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~-~~~g~~v~~~~~~  173 (193)
                      .|.+|+|.|- |.+|..+++++ +..|++|+.+..+
T Consensus        31 ~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          31 KGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence            6889999996 99999999877 4689998877654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.38  E-value=0.61  Score=29.34  Aligned_cols=43  Identities=16%  Similarity=0.021  Sum_probs=33.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      .++|.|. |.+|..+++.++  +..++++..++++.+.+++.|...
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~   44 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANF   44 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEE
T ss_pred             EEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccc
Confidence            5788887 999998877765  446778888889888888888743

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.08  E-value=1.7  Score=32.09  Aligned_cols=49  Identities=12%  Similarity=0.234  Sum_probs=40.7

Q ss_pred             HHHhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHh
Q 029425          131 VFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGV-RVFVTAGLATRFILCQ  181 (193)
Q Consensus       131 l~~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~-~v~~~~~~~~~~~~~~  181 (193)
                      +....+++++++++=.|  ++.|..++++++..++ +++.++-+++..+.++
T Consensus       143 ~~~~~~l~~~~~vlD~G--cG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~  192 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLG--SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE  192 (328)
T ss_dssp             HHHHSCCCTTCEEEEET--CTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEcC--CCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            33677899999988887  6779999999999887 7999999988776654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.92  E-value=1.4  Score=28.45  Aligned_cols=36  Identities=25%  Similarity=0.123  Sum_probs=28.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCcchH
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGLATRF  177 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~--~v~~~~~~~~~~  177 (193)
                      +|.|.||+|.+|..+..++...+.  ++.+++.++.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~   39 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG   39 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch
Confidence            688999889999999888888775  677777665443

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.84  E-value=1.9  Score=27.27  Aligned_cols=53  Identities=13%  Similarity=0.055  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHH----HHCCCEEEEEeCCcchH-------------HHHhhcCCcEEecC
Q 029425          138 SPGESFLVHGGSSGIGTFAIQMG----KCQGVRVFVTAGLATRF-------------ILCQPFNIRVFIGF  191 (193)
Q Consensus       138 ~~~~~vli~ga~g~~G~~~i~~~----~~~g~~v~~~~~~~~~~-------------~~~~~~G~~~~~~~  191 (193)
                      ++.++++|.|+ |.+|.=++..+    +..|.+|+++.+++.-+             +.+++.|....+|.
T Consensus        35 ~~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~  104 (137)
T d1m6ia2          35 REVKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNA  104 (137)
T ss_dssp             HHCSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSC
T ss_pred             hcCCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCC
Confidence            45689999998 99885433333    45799999988755321             33456677655543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=82.57  E-value=1.1  Score=30.83  Aligned_cols=51  Identities=14%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEec
Q 029425          137 LSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFIG  190 (193)
Q Consensus       137 ~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~~  190 (193)
                      .+++.+||=.|  .+.|..+..+++ .|++|+.++.+++.++.+++.+...++.
T Consensus        40 ~~~~~~vLDiG--cG~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~   90 (246)
T d2avna1          40 LKNPCRVLDLG--GGTGKWSLFLQE-RGFEVVLVDPSKEMLEVAREKGVKNVVE   90 (246)
T ss_dssp             CCSCCEEEEET--CTTCHHHHHHHT-TTCEEEEEESCHHHHHHHHHHTCSCEEE
T ss_pred             cCCCCEEEEEC--CCCchhcccccc-cceEEEEeeccccccccccccccccccc
Confidence            45777888777  457888888876 5899999999999999999877655543

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=82.44  E-value=1.8  Score=26.56  Aligned_cols=50  Identities=10%  Similarity=0.030  Sum_probs=37.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe-CCcchHHHHhhcCCcEEe
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA-GLATRFILCQPFNIRVFI  189 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~-~~~~~~~~~~~~G~~~~~  189 (193)
                      |.+|||....-.+-.....+++..|++|+... ...+.++.+++..++.++
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dlii   51 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVT   51 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEE
Confidence            67888888878888888888899999987554 445667777776666444

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.43  E-value=1.3  Score=29.65  Aligned_cols=47  Identities=11%  Similarity=0.103  Sum_probs=35.9

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~  182 (193)
                      ...+++++++||=.|+  +.|..++.+++. +.+|+.++.+++..+.+++
T Consensus        27 ~~l~~~~g~~VLDiGc--GsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~   73 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVGC--GTGGVTLELAGR-VRRVYAIDRNPEAISTTEM   73 (186)
T ss_dssp             HHHCCCTTCEEEEESC--TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEEC--CeEccccccccc-ceEEEEecCCHHHHHHHHH
Confidence            3457899999987774  456666777765 5699999999998877764

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=82.36  E-value=0.22  Score=32.43  Aligned_cols=44  Identities=9%  Similarity=-0.091  Sum_probs=30.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcE
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRV  187 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~  187 (193)
                      |-++|+ |.+|...+..++..+.-+.+..|+.++.+.+.+.+...
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~   45 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGK   45 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCC
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccccc
Confidence            346786 99999988766553333457889999998888765533

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=82.06  E-value=1.4  Score=27.02  Aligned_cols=35  Identities=17%  Similarity=0.023  Sum_probs=27.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHH---CCCEEEEEeCCcc
Q 029425          140 GESFLVHGGSSGIGTFAIQMGKC---QGVRVFVTAGLAT  175 (193)
Q Consensus       140 ~~~vli~ga~g~~G~~~i~~~~~---~g~~v~~~~~~~~  175 (193)
                      .++++|.|+ |.+|.=++.++.+   +|.+|.++.+++.
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence            478999998 9999877766554   4789999987654

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=82.02  E-value=1.9  Score=26.62  Aligned_cols=49  Identities=8%  Similarity=0.038  Sum_probs=39.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      ++|||....-..-.....+++..|++|.......+.++.+++...+.++
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil   50 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLIL   50 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEE
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEE
Confidence            5788888878888888888889999998887777778888877776554

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.01  E-value=0.63  Score=33.98  Aligned_cols=32  Identities=25%  Similarity=0.252  Sum_probs=27.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          142 SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       142 ~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      -|+|+|+ |..|+.+..-+...|++|+++.+.+
T Consensus        21 DVvVIGa-G~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGA-GSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4788897 9999998888888899999998753

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.72  E-value=1.9  Score=26.42  Aligned_cols=49  Identities=10%  Similarity=0.022  Sum_probs=39.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      ++|||.-..-.+......+++..|++|......++-++.+++...|-++
T Consensus         1 KrILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlil   49 (117)
T d2a9pa1           1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIII   49 (117)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEE
Confidence            3688887778888888889999999999888788888888887777554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.64  E-value=0.75  Score=33.53  Aligned_cols=31  Identities=19%  Similarity=0.305  Sum_probs=27.2

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCc
Q 029425          143 FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLA  174 (193)
Q Consensus       143 vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~  174 (193)
                      |+|+|+ |..|+.+...+...|++|+++.+.+
T Consensus        26 VvVIG~-G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGS-GGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             EEEECS-SHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            788897 9999998888888999999998754

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.06  E-value=5.1  Score=28.70  Aligned_cols=57  Identities=19%  Similarity=0.285  Sum_probs=40.1

Q ss_pred             HhcCCCCCC-eEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CcchHHHHhhcCCcEEe
Q 029425          133 MTSHLSPGE-SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG---LATRFILCQPFNIRVFI  189 (193)
Q Consensus       133 ~~~~~~~~~-~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~---~~~~~~~~~~~G~~~~~  189 (193)
                      +.+..+++. ..+|..++|+.|.++...++.+|.+.+++..   ++.+...++.+|+..+.
T Consensus        53 ~~g~~~~~~~~~vv~~SsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~  113 (302)
T d1ve1a1          53 ERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVL  113 (302)
T ss_dssp             HTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEE
T ss_pred             HhCCCCCCCCcEEEEecCCcchhhhhhhhhccCcceeEeeecccchheeehhhhhhhcchh
Confidence            344444443 5566666799999999999999998666654   34466677788886544

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=80.62  E-value=2.3  Score=26.12  Aligned_cols=49  Identities=12%  Similarity=0.057  Sum_probs=41.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHhhcCCcEEe
Q 029425          141 ESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGLATRFILCQPFNIRVFI  189 (193)
Q Consensus       141 ~~vli~ga~g~~G~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~G~~~~~  189 (193)
                      .+|||....-.+-.....+++..|++|......++-++.+++.-+|.++
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlil   51 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIV   51 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcccccEEE
Confidence            5788888888888889999999999999888888888888887777554

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.43  E-value=1.9  Score=30.84  Aligned_cols=48  Identities=19%  Similarity=0.283  Sum_probs=40.8

Q ss_pred             HhcCCCCCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHhh
Q 029425          133 MTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRFILCQP  182 (193)
Q Consensus       133 ~~~~~~~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~~~~~~  182 (193)
                      ...+++||++||=.|  .+.|.++..+|+..|  .+|+.++.+++..+.+++
T Consensus        90 ~~l~i~PG~~VLE~G--~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~  139 (264)
T d1i9ga_          90 HEGDIFPGARVLEAG--AGSGALTLSLLRAVGPAGQVISYEQRADHAEHARR  139 (264)
T ss_dssp             HHTTCCTTCEEEEEC--CTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEecC--cCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHH
Confidence            567899999998877  566889999999876  589999999998888764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=80.16  E-value=1.5  Score=28.37  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCcchH
Q 029425          139 PGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGLATRF  177 (193)
Q Consensus       139 ~~~~vli~ga~g~~G~~~i~~~~~~g--~~v~~~~~~~~~~  177 (193)
                      +..+|.|.|+ |.+|..++..+...|  -++++++..+++.
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            3568999997 999998877777766  3899999887654