Citrus Sinensis ID: 029476

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msgsppllLNQILFFLCgcayslplpflrwkshtfmaPLCLVITMgltglpfymhtqqyvlgrpfvitrpLILMGAIMSIFAFVNGLlkdlpdvegdkkfgMNTLCVLlgkekvfpLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKvdldnfestFGFYMLIWKLTFVEYILIHFLR
Flexible Loop (DISEMBL)
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR
Low Complexity Region (SEG)
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR
Disordered region (IsUnstruct)
******LLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHFL*
Disordered Region (DISOPRED)
**GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR
Disordered Region (DISEMBL)
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR
Disordered Region (DISPRO)
**GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	yes	no	0.989	0.472	0.447	4e-43
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.989	0.486	0.432	2e-42
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.989	0.465	0.395	3e-36
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	1.0	0.471	0.386	2e-35
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.891	0.445	0.337	3e-14
Q0D576	379	Probable homogentisate ph	no	no	0.865	0.440	0.289	8e-10

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 124/192 (64%), Gaps = 1/192 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL L   + F+ G AYS+ LPFLRWK    +A LC L +   +  L F++H Q +V 
Sbjct: 213 GSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVF 272

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
            RP V TRPLI   A M+ F+ V  L KD+PD+EGD+ FG+ +  V LG++KVF +CV  
Sbjct: 273 RRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGL 332

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           + + Y  A++ GA+S+ + +K  T++GH+ILA ILW +S+ +DL +  +   FYM IWKL
Sbjct: 333 LEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKL 392

Query: 182 TFVEYILIHFLR 193
            + EY+LI  +R
Sbjct: 393 FYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 121/192 (63%), Gaps = 1/192 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FY+H Q +V 
Sbjct: 202 GSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 261

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
           GRP + TRPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++VF  CV  
Sbjct: 262 GRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTL 321

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           + + Y  A++ GA+S F+ +K+++++GH ILA  LW ++K VDL +       YM IWKL
Sbjct: 322 LQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKL 381

Query: 182 TFVEYILIHFLR 193
            + EY+L+ FL+
Sbjct: 382 FYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 116/192 (60%), Gaps = 1/192 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVL 61
            S PL     +  +   AY++ LP LRWK +  +  +  +  + +T  L F++H Q  V 
Sbjct: 219 DSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVF 278

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
            RP    RPLI   AI+SI+A V  L KD+PD+EGD+KFG+ +L + LG ++VF +CV+ 
Sbjct: 279 KRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSL 338

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           + + YG  ++ GA+S  + +K++T++GH++LA +LW  +K VDL +      FYM IWKL
Sbjct: 339 LEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKL 398

Query: 182 TFVEYILIHFLR 193
              EY LI   R
Sbjct: 399 HTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 119/194 (61%), Gaps = 1/194 (0%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQY 59
           ++GS PL+ N ++      AYS+ +P LRWK + F+A +C++ T  L   + ++ H Q  
Sbjct: 216 ITGSWPLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTV 275

Query: 60  VLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCV 119
           VL RP    R L  + A M+ ++    L KD+PDVEGDK+ G+++  V LG+++ F +CV
Sbjct: 276 VLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICV 335

Query: 120 NTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIW 179
           +   + +G  ++AGAS S    K+ T +G+++LA ILW Q+K VDL +  ST  FYM IW
Sbjct: 336 SFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIW 395

Query: 180 KLTFVEYILIHFLR 193
           KL +  + L+  +R
Sbjct: 396 KLLYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 6/178 (3%)

Query: 18  GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGA 76
           G  YS+P   LR K     A L +    G L     Y H  +  LG PF  + P+  + +
Sbjct: 212 GTIYSVPP--LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITS 268

Query: 77  IMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS 136
            +++FA V  + KDLPDVEGD+KF ++TL   LG   +  L    +LV Y  A+      
Sbjct: 269 FVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYM 328

Query: 137 SFMINKLVTIIGHSILALILWIQSKKVDLDNF--ESTFGFYMLIWKLTFVEYILIHFL 192
             +    + I  H ILA  L  Q+  ++  N+  E+  G+Y  IW L + EY+L  FL
Sbjct: 329 PQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 6/173 (3%)

Query: 18  GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGA 76
           G  YS+P PF R K +   A L +    G L     Y  T+   LG  F  + P+  +  
Sbjct: 205 GTIYSVP-PF-RLKRYPVAAFLIIATVRGFLLNFGVYYATRA-ALGLTFQWSSPVAFITC 261

Query: 77  IMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS 136
            +++FA V  + KDLPDVEGD+K+ ++TL   LG   +  L    ++  Y  A+      
Sbjct: 262 FVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLM 321

Query: 137 SFMINKLVTIIGHSILALILWIQSKKVDLDNF--ESTFGFYMLIWKLTFVEYI 187
                + V +  H+ LA+ +  Q+  ++   +  ++   +Y  IW L + EYI
Sbjct: 322 PQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIWNLFYAEYI 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
374461300	239	aromatic prenyltransferase, partial [Epi	0.974	0.786	0.476	4e-45
295656253	401	homogentisate geranylgeranyl transferase	0.984	0.473	0.465	7e-44
219842170	411	homogentisate geranylgeranyl transferase	0.984	0.462	0.471	4e-43
185487419	407	homogentisate phytyltransferase [Manihot	0.989	0.469	0.458	1e-42
171190284	317	homogentisate geranylgeranyl transferase	1.0	0.608	0.469	2e-42
254596582	407	homogentisate phytyltransferase [Malus x	0.989	0.469	0.442	3e-42
147858275	406	hypothetical protein VITISV_043992 [Viti	0.989	0.470	0.447	4e-42
225446000	406	PREDICTED: homogentisate phytyltransfera	0.989	0.470	0.447	5e-42
33391138	408	homogentisic acid geranylgeranyl transfe	0.994	0.470	0.430	5e-42
56126261	406	homogentisate geranylgeranyl transferase	0.989	0.470	0.447	5e-42

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 130/189 (68%), Gaps = 1/189 (0%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQY 59
           M  SPPLL + +  FL   AYSL LPFLRWK    +  +C++    L   L F++H Q+Y
Sbjct: 38  MFKSPPLLYSILTVFLLATAYSLHLPFLRWKKSAVLTSVCIISVRALVIPLGFFLHMQKY 97

Query: 60  VLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCV 119
           VLGRP +IT+P++   A M+I + V  ++KD+PDV+GD+ FG+ +L + LGKEKVF L V
Sbjct: 98  VLGRPAIITKPVMFAVAFMAIISTVIAVIKDIPDVDGDEAFGLQSLTIRLGKEKVFWLGV 157

Query: 120 NTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIW 179
           +T+L+ YG A+I GASS+ M NK++T++GH ILA ILW +++ V +    ST  FY+ +W
Sbjct: 158 STLLMAYGTAVIVGASSTLMSNKIITVLGHCILASILWTRARTVVISEPASTLSFYLFVW 217

Query: 180 KLTFVEYIL 188
           KL + EY+L
Sbjct: 218 KLLYAEYLL 226

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 1/191 (0%)

Query: 4   SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVLG 62
           SPP+    ++ FL G AYS+ LP LRWK + F+A   +++   +T  L F+ H Q+YVLG
Sbjct: 211 SPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLG 270

Query: 63  RPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTM 122
           RP V  R L      +S+F  V  L KD+PDV+GD+ FG+ +  V LG+++VF LC+  +
Sbjct: 271 RPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCIGIL 330

Query: 123 LVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLT 182
           L+ Y  AL+ GASSSF+++KLVT+IGH  LA ILW ++  V+L++  S   FYM IWKL 
Sbjct: 331 LIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIWKLF 390

Query: 183 FVEYILIHFLR 193
           + EY+LI F+R
Sbjct: 391 YAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 127/193 (65%), Gaps = 3/193 (1%)

Query: 4   SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVLG 62
           SPPLL   ++ F  G  YS+ LPFLRWK H F+A  C++I   +   L F++H Q++VLG
Sbjct: 219 SPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKFVLG 278

Query: 63  RPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTM 122
           +   I R L+   A M  F+    L KD+PDVEGD+ +G+ +  V LG+E+V  LCVN +
Sbjct: 279 KSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNML 338

Query: 123 LVGYGCALIAGAS--SSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWK 180
           LV YG A++ GAS  SS +  KL+T+IGHS +A ILW++++ VDL + +S   FYM IWK
Sbjct: 339 LVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIWK 398

Query: 181 LTFVEYILIHFLR 193
           L + EY LI F+R
Sbjct: 399 LFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 1/192 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK   F+A +C L +   +  L FY+H Q +V 
Sbjct: 216 GSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLAFYLHMQTHVY 275

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
           GRP V +RPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+E+VF  C++ 
Sbjct: 276 GRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQERVFWTCISL 335

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           + + YG A++ GA+SS   +K +T++GH+ILA ILW ++K VDL +  +    YM IWKL
Sbjct: 336 LEIAYGVAILVGAASSHTWSKCITVLGHAILASILWNRAKSVDLKSKAAITSCYMFIWKL 395

Query: 182 TFVEYILIHFLR 193
            + EY+LI  +R
Sbjct: 396 FYAEYLLIPLVR 407

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 131/194 (67%), Gaps = 1/194 (0%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQY 59
           M  SPP+L   ++ F  G AYS+ +P  RWK + F+A +C+VI   +T  L  + H QQY
Sbjct: 124 MFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQY 183

Query: 60  VLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCV 119
           VLGRP + +R L      M++F  V  L KD+PDV+GD+ FG+ T+ V LGK++VF LC+
Sbjct: 184 VLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCI 243

Query: 120 NTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIW 179
             +L+ YG A++ G+SSS +++KLVT+ GH ILA ILW ++  VDL++ +S   FYM IW
Sbjct: 244 TILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIW 303

Query: 180 KLTFVEYILIHFLR 193
           KL + EY+LI F+R
Sbjct: 304 KLFYAEYLLIPFVR 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254596582|gb|ACT75571.1| homogentisate phytyltransferase [Malus x domestica]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 127/192 (66%), Gaps = 1/192 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  L F++H Q +V 
Sbjct: 216 GSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVVAAMCILAVRAVIVQLAFFLHMQMHVY 275

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
            RP   +RPLI   A MS F+ V  L KD+PD++GDK FG+ +  V +G+++VF +C++ 
Sbjct: 276 KRPAAFSRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIRSFTVRMGQKRVFWICISL 335

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           + + YG A++ GASS FM++K VT++GH+ILAL+LW ++K VDL++  +   FYM IWKL
Sbjct: 336 LEMAYGVAVLLGASSGFMLSKCVTVLGHTILALVLWNRAKSVDLNSKAAITSFYMFIWKL 395

Query: 182 TFVEYILIHFLR 193
            + EY+LI  +R
Sbjct: 396 FYAEYLLIPLVR 407

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 124/192 (64%), Gaps = 1/192 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FYMH Q +V 
Sbjct: 215 GSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYMHVQTFVY 274

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
           GRP V +RPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++VF +C+  
Sbjct: 275 GRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVRLGQKRVFWICILL 334

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           + + YG A+  GA+SS + +KLVT++GH++LA ILW ++K +DL +  +   FYM IW+L
Sbjct: 335 LEMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSIDLKSKAAITSFYMFIWQL 394

Query: 182 TFVEYILIHFLR 193
            + EY LI  +R
Sbjct: 395 FYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446000|ref|XP_002267306.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic [Vitis vinifera] gi|297735423|emb|CBI17863.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 124/192 (64%), Gaps = 1/192 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FYMH Q +V 
Sbjct: 215 GSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYMHVQTFVY 274

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
           GRP V +RPLI   A MS F+ V  L KD+PD+EGD+ FG+ +  V LG+++VF +C+  
Sbjct: 275 GRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQKRVFWICILL 334

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           + + YG A+  GA+SS + +KLVT++GH++LA ILW ++K VDL +  +   FYM IW+L
Sbjct: 335 LQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSVDLKSKAAITSFYMFIWQL 394

Query: 182 TFVEYILIHFLR 193
            + EY LI  +R
Sbjct: 395 FYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391138|gb|AAP43911.1| homogentisic acid geranylgeranyl transferase [Hordeum vulgare] gi|326497589|dbj|BAK05884.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 121/193 (62%), Gaps = 1/193 (0%)

Query: 2   SGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYV 60
           SGS PL+   I+ FL G AYS+  PFLRWK H  +A  C++     L  L F+ H QQ+V
Sbjct: 216 SGSAPLMCALIVSFLLGSAYSIEAPFLRWKRHALLAASCILFVRAILVQLAFFAHMQQHV 275

Query: 61  LGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVN 120
           L RP   T+ L+     M  F+ V  L KD+PDV+GD+ FG+ +L V LG ++V+ LC++
Sbjct: 276 LKRPLAATKSLVFATLFMCCFSAVIALFKDIPDVDGDRDFGIQSLSVRLGPQRVYQLCIS 335

Query: 121 TMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWK 180
            +L  YG A + GASS+ +  K++T+ GH +LAL LW +++  +++N      FYM IWK
Sbjct: 336 ILLTAYGAATLVGASSTNLFQKIITVSGHGLLALTLWQRAQHFEVENQARVTSFYMFIWK 395

Query: 181 LTFVEYILIHFLR 193
           L + EY LI F++
Sbjct: 396 LFYAEYFLIPFVQ 408

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56126261|gb|AAV74623.1| homogentisate geranylgeranyl transferase [Vitis vinifera]

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 124/192 (64%), Gaps = 1/192 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FYMH Q +V 
Sbjct: 215 GSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYMHVQTFVY 274

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
           GRP V +RPLI   A MS F+ V  L KD+PD+EGD+ FG+ +  V LG+++VF +C+  
Sbjct: 275 GRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQKRVFWICILL 334

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           + + YG A+  GA+SS + +KLVT++GH++LA ILW ++K VDL +  +   FYM IW+L
Sbjct: 335 LQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSVDLKSKAAITSFYMFIWQL 394

Query: 182 TFVEYILIHFLR 193
            + EY LI  +R
Sbjct: 395 FYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.989	0.486	0.427	3.6e-41
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.989	0.469	0.401	8e-37
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.974	0.458	0.396	2.7e-36
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.901	0.442	0.348	2.9e-17

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 82/192 (42%), Positives = 121/192 (63%)

Query:     3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVL 61
             GS PL     + F+ G AYS+ LP LRWK    +A +C++    +   + FY+H Q +V 
Sbjct:   202 GSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 261

Query:    62 GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
             GRP + TRPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++VF  CV  
Sbjct:   262 GRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTL 321

Query:   122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
             + + Y  A++ GA+S F+ +K+++++GH ILA  LW ++K VDL +       YM IWKL
Sbjct:   322 LQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKL 381

Query:   182 TFVEYILIHFLR 193
              + EY+L+ FL+
Sbjct:   382 FYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 77/192 (40%), Positives = 116/192 (60%)

Query:     3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVL 61
             GS PL     +  +   AY++ LP LRWK +  +  +  +  + +T  L F++H Q  V 
Sbjct:   216 GSWPLFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVF 275

Query:    62 GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
              RP    RPLI   AI+SI+A V  L KD+PD+EGD+KFG+ +L + LG ++VF +CV+ 
Sbjct:   276 KRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSL 335

Query:   122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
             + + YG  ++ GA+S  + +K++T++GH+ILA +LW  +K  DL +      FYM IWKL
Sbjct:   336 LEMAYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWKL 395

Query:   182 TFVEYILIHFLR 193
                EY LI   R
Sbjct:   396 HTAEYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 75/189 (39%), Positives = 115/189 (60%)

Query:     6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVLGRP 64
             PL     +  +   AY++ LP LRWK +  +  +  +  + +T  L F++H Q  V  RP
Sbjct:   222 PLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRP 281

Query:    65 FVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLV 124
                 RPLI   AI+SI+A V  L KD+PD+EGD+KFG+ +L + LG ++VF +CV+ + +
Sbjct:   282 TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEM 341

Query:   125 GYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFV 184
              YG  ++ GA+S  + +K++T++GH++LA +LW  +K VDL +      FYM IWKL   
Sbjct:   342 TYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTA 401

Query:   185 EYILIHFLR 193
             EY LI   R
Sbjct:   402 EYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 63/181 (34%), Positives = 90/181 (49%)

Query:    15 FLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLIL 73
             FL G  YS+P P LR K     A L +    G L     Y H  +  LG PF  + P+  
Sbjct:   217 FL-GTIYSVP-P-LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAF 272

Query:    74 MGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAG 133
             + + +++FA V  + KDLPDVEGD+KF ++TL   LG   +  L    +LV Y  A+   
Sbjct:   273 ITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLA 332

Query:   134 ASSSFMINKLVTIIGHSILALILWIQSKKVDLDNF--ESTFGFYMLIWKLTFVEYILIHF 191
                  +    + I  H ILA  L  Q+  ++  N+  E+  G+Y  IW L + EY+L  F
Sbjct:   333 FYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPF 392

Query:   192 L 192
             L
Sbjct:   393 L 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.332   0.147   0.471    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      193       193   0.00098  110 3  11 21  0.47    31
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.80u 0.11s 17.91t   Elapsed:  00:00:00
  Total cpu time:  17.80u 0.11s 17.91t   Elapsed:  00:00:00
  Start:  Mon May 20 23:13:01 2013   End:  Mon May 20 23:13:01 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	2e-64
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-33
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-07
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	7e-06
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	0.002
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	0.004

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  199 bits (509), Expect = 2e-64
 Identities = 90/194 (46%), Positives = 124/194 (63%), Gaps = 1/194 (0%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQY 59
           + GS PL     + F+ G AYS+ LP LRWK     A  C L +   +  L F++H Q +
Sbjct: 87  IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTH 146

Query: 60  VLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCV 119
           VLGRP V TRPLI   A M  F+ V  L KD+PDVEGD+ FG+ +  V LG+++VF LCV
Sbjct: 147 VLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV 206

Query: 120 NTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIW 179
           N + + Y  A++ GASSSF+ +K++T++GH ILA ILW +++ VDL +  +   FYM IW
Sbjct: 207 NLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW 266

Query: 180 KLTFVEYILIHFLR 193
           KL + EY LI  +R
Sbjct: 267 KLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  121 bits (305), Expect = 1e-33
 Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 4/187 (2%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVL 61
             P LL+   +  L G AYSLP P +R K    +A LC+    G+   L  ++H Q ++L
Sbjct: 118 LGPWLLITVGISLLIGTAYSLP-P-IRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WLL 174

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121
           G   +I   + L+   + +F F   + KD+PD+EGD+++ + T  + LGK+ VF L    
Sbjct: 175 GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWV 234

Query: 122 MLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKL 181
           +   Y   +  G  S   +N    I+ H IL  +LW +S++VDL + ++   FY  IWKL
Sbjct: 235 LTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKL 294

Query: 182 TFVEYIL 188
            F+EY+L
Sbjct: 295 FFLEYLL 301

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 14/184 (7%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYV 60
           +   P LLL  +L  L G  YS   P LR K    +  L + +  GL  L        Y 
Sbjct: 88  LLLGPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGA-----YA 139

Query: 61  LGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVN 120
           +G    I  PL+L+   + + +    L  D+ DVEGD+K G+ TL V LG+++   L   
Sbjct: 140 VGG--DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYAL 197

Query: 121 TMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWK 180
            +      AL+       ++  L+ ++   +LAL L + ++ +   N E     ++ I  
Sbjct: 198 LLAA----ALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIAL 253

Query: 181 LTFV 184
           L  +
Sbjct: 254 LFGL 257

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 10/183 (5%)

Query: 7   LLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFV 66
           LLLN + F L   A  L L +   K  TF+  L L       GL               +
Sbjct: 112 LLLNPLAFLLSLAALVLALAYPFLKRFTFLPQLVL---GLAFGLGALA---GAAAVGGSL 165

Query: 67  ITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGY 126
                +L+ A +        ++  + D+EGD+K G+ +L VL G +K   L +  +L+  
Sbjct: 166 PLLAWLLLLAAILWTLG-YDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALAL-LLLLAS 223

Query: 127 GCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFESTFGFYMLIWKLTFVEY 186
              ++ G      +  L+ ++G  + AL+L  Q   VD+ +  + F  + +   L  + +
Sbjct: 224 ALLVLLGL--LAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLF 281

Query: 187 ILI 189
           I +
Sbjct: 282 IGL 284

Length = 289

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 12/100 (12%)

Query: 65  FVITRPLILMGAIMSIFAF----VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVN 120
           +     +  +  + ++F F    +  ++ D+ D+EGD+K G+ TL ++LGKE+       
Sbjct: 153 YYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKER------- 205

Query: 121 TMLVGYGCALIAGASSSFMIN-KLVTIIGHSILALILWIQ 159
           T+       L+        +   L+ ++   +L L+ ++ 
Sbjct: 206 TLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLAYVL 245

Length = 285

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 87  LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS 136
           ++KD+ D+EGD+  G  TL +L+G  K        + V     L+A A+S
Sbjct: 175 IIKDVEDIEGDRAEGARTLPILIGVRK-------ALYVAAAFLLVAVAAS 217

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	99.93
PRK13105	282	ubiA prenyltransferase; Reviewed	99.83
PRK12872	285	ubiA prenyltransferase; Reviewed	99.81
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.81
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.8
PLN00012	375	chlorophyll synthetase; Provisional	99.79
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.79
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.75
PRK05951	296	ubiA prenyltransferase; Reviewed	99.74
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.73
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.72
PRK12882	276	ubiA prenyltransferase; Reviewed	99.72
PRK13591	307	ubiA prenyltransferase; Provisional	99.71
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.71
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.7
PRK12884	279	ubiA prenyltransferase; Reviewed	99.7
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.69
PLN02922	315	prenyltransferase	99.69
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.67
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.65
PRK12875	282	ubiA prenyltransferase; Reviewed	99.62
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.62
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.59
PRK13106	300	ubiA prenyltransferase; Reviewed	99.54
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.54
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.53
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.52
PRK12888	284	ubiA prenyltransferase; Reviewed	99.51
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.48
PRK12886	291	ubiA prenyltransferase; Reviewed	99.47
PRK12876	300	ubiA prenyltransferase; Reviewed	99.47
PRK12895	286	ubiA prenyltransferase; Reviewed	99.46
PRK12874	291	ubiA prenyltransferase; Reviewed	99.44
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.43
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.41
PRK13592	299	ubiA prenyltransferase; Provisional	99.35
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.34
PRK12871	297	ubiA prenyltransferase; Reviewed	99.31
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.24
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.23
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.05
PRK12873	294	ubiA prenyltransferase; Reviewed	99.05
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.04
PRK13362	306	protoheme IX farnesyltransferase; Provisional	98.91
PLN02776	341	prenyltransferase	97.08
KOG4581	359	consensus Predicted membrane protein [Function unk	96.48
PRK08238	479	hypothetical protein; Validated	95.99
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	94.25
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	93.56
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	86.39
PRK12884	279	ubiA prenyltransferase; Reviewed	86.35
PRK13362	306	protoheme IX farnesyltransferase; Provisional	85.56
PRK12872	285	ubiA prenyltransferase; Reviewed	85.45
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	83.93
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	83.5

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=8.6e-58  Score=398.49  Aligned_cols=192  Identities=46%  Similarity=0.860  Sum_probs=186.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 029476            2 SGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSI   80 (193)
Q Consensus         2 ~gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l   80 (193)
                      .|++|+++++..+++++++||+|+||+|+||+|+++++|+.++|+ ++|+|+|.|+++.++|++..+++++++.++++++
T Consensus        88 ~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~  167 (280)
T PLN02878         88 VGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCF  167 (280)
T ss_pred             HChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHH
Confidence            367789999999999999999999999999999999999999999 9999999999999999887888899999889999


Q ss_pred             HHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 029476           81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQS  160 (193)
Q Consensus        81 ~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~  160 (193)
                      |+.++|++||+||+||||++|+||+|+++|+|+++++|..++.+||++++.+|++++..+++.+++++|++++..+|+|+
T Consensus       168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs  247 (280)
T PLN02878        168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRA  247 (280)
T ss_pred             HHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 029476          161 KKVDLDNFESTFGFYMLIWKLTFVEYILIHFLR  193 (193)
Q Consensus       161 ~~~d~~~~~a~~~fY~fiW~lf~~ey~l~p~~~  193 (193)
                      +++|++||+++++|||||||+||+||+++|+.|
T Consensus       248 ~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        248 QSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.1e-47  Score=339.01  Aligned_cols=188  Identities=33%  Similarity=0.591  Sum_probs=176.4

Q ss_pred             CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029476            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (193)
Q Consensus         3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (193)
                      .+++.++...++++++++||  .||+|+||+|+.++.|++.++| ++++|.+.|+++...+ +..++.++++++++.+++
T Consensus       118 ~~~~~~~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  194 (308)
T PRK12887        118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGG-SVLIPPTVWLLTLFVLVF  194 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCcHHHHHHHHHHHHH
Confidence            35788888999999999999  7999999999999999999999 9999999888764433 556778888999999999


Q ss_pred             HHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 029476           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSK  161 (193)
Q Consensus        82 ~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~  161 (193)
                      +.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+..++.++.+...+++.+++++|++++..+|+|++
T Consensus       195 ~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (308)
T PRK12887        195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ  274 (308)
T ss_pred             HHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 029476          162 KVDLDNFESTFGFYMLIWKLTFVEYILIHFLR  193 (193)
Q Consensus       162 ~~d~~~~~a~~~fY~fiW~lf~~ey~l~p~~~  193 (193)
                      ++|++||+++++|||||||+||+||+++|+.|
T Consensus       275 ~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        275 RVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999975

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=1.8e-24  Score=190.43  Aligned_cols=162  Identities=20%  Similarity=0.213  Sum_probs=120.9

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (193)
                      +|..+....++++++++||  .||+|+|++|+++|+|... .+ .++    +.+..+.|.+  .+..   ......+|+.
T Consensus       117 ~~~~~~l~~v~~~l~~~YS--~pPlRlK~rp~l~~l~~~~-~g-~p~----~~~~~~~g~~--~~~~---~l~a~~~w~~  183 (292)
T PRK13595        117 PPAATLLLLLYAALFVGYS--LPPLRFKARPFLDGLSNAA-YA-LPL----ALPALALGAP--VPWP---PLLALMAWSV  183 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHc--cCccchhcCcchhHHHHHH-HH-HHH----HHHHHHcCCc--chHH---HHHHHHHHHH
Confidence            3455666678889999999  7999999999999998532 22 111    2233333312  1122   2244567889


Q ss_pred             HHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 029476           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKV  163 (193)
Q Consensus        84 ~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~  163 (193)
                      +.|++||+||+||||+.|+||+|+++|+|++.++|..+..++-.  ......++..   +.+.+.+...+..+|     .
T Consensus       184 g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~--~~~~~~~~~~---~~~~~~~~~~~~~~~-----~  253 (292)
T PRK13595        184 GKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGA--LLWPVSRLTA---LALWLICGGMALALW-----R  253 (292)
T ss_pred             HHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHH--HHHHhcchHH---HHHHHHHHHHHHHHh-----c
Confidence            99999999999999999999999999999999999988777666  3334445533   336777776555555     7


Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHh
Q 029476          164 DLDNFESTFGFYMLIWKLTFVEYIL  188 (193)
Q Consensus       164 d~~~~~a~~~fY~fiW~lf~~ey~l  188 (193)
                      |.+++++++.|..|+|.|+.++++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~g~~~  278 (292)
T PRK13595        254 RPTPETAHRLYPLSIVTPWIVGTVA  278 (292)
T ss_pred             CCCHHHHhccchHHHHHhHHHHHHH
Confidence            8999999999999999999998764

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=8.4e-19  Score=153.91  Aligned_cols=121  Identities=21%  Similarity=0.228  Sum_probs=97.3

Q ss_pred             CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029476            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (193)
Q Consensus         3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (193)
                      ++|+.+....++++.++.||  .||.|+|++|+.++.+...... ...+|.+.     + +  ..++.+.+.....+.++
T Consensus       103 ~~~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~-----~-~--~~~~~~~~l~~~~~~~~  172 (282)
T PRK13105        103 GSWASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYGLVL-----A-G--APFTAALWAVLAAFFLW  172 (282)
T ss_pred             hhHHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHHHHH-----h-h--ccccHHHHHHHHHHHHH
Confidence            35666777779999999999  7999999999999976554433 22223321     1 2  23455677788889999


Q ss_pred             HHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 029476           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAG  133 (193)
Q Consensus        82 ~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~  133 (193)
                      +.+++++||+||+||||+.|+||+|+++|+|++.+++..+..++++..+..+
T Consensus       173 ~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        173 GMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998776444

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.81  E-value=3e-18  Score=148.18  Aligned_cols=126  Identities=23%  Similarity=0.320  Sum_probs=101.3

Q ss_pred             CchHHHHHHHHHHHHHHHhcCCCCcc-hhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 029476            3 GSPPLLLNQILFFLCGCAYSLPLPFL-RWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSI   80 (193)
Q Consensus         3 gs~~l~~~~~~~l~l~~~YS~~~Ppl-RlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l   80 (193)
                      .+|+.++...++.++++.||  .||. |+||.|.+++.++...+| ...++.+.+ +      ...++.+.+....+.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~Ys--~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~-~------~~~~~~~~~~~~~~~fl  172 (285)
T PRK12872        102 GGPKFALIFIIPLILGILYS--VFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY-Y------QLTIFSLLLLYAVFIFL  172 (285)
T ss_pred             ccHHHHHHHHHHHHHHHHHh--ChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh-c------ccccchHHHHHHHHHHH
Confidence            46777778888999999999  5665 799999999999999998 444433222 1      12245556667788888


Q ss_pred             HHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029476           81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSS  137 (193)
Q Consensus        81 ~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~  137 (193)
                      ..+..+++||+||+||||+.|++|+|+++|+|++.+++..+..+.++..+.......
T Consensus       173 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~  229 (285)
T PRK12872        173 KSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGL  229 (285)
T ss_pred             HHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            899999999999999999999999999999999999999999999887775555443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.81  E-value=1.2e-18  Score=151.35  Aligned_cols=171  Identities=18%  Similarity=0.173  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029476            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (193)
Q Consensus         5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (193)
                      |+......++++++++||  .||+|+||++++++..+....+..++..    +....+   .++.+.+.....+++++.+
T Consensus       106 ~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~l~~~~  176 (283)
T TIGR01476       106 WLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMA----GHAIFA---PLTWQSVVVALIYSLGAHG  176 (283)
T ss_pred             HHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHH----HHHHhC---CCCHHHHHHHHHHHHHHHH
Confidence            333455557888999999  7999999999888876553333111111    111222   2455566677788899999


Q ss_pred             HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029476           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD  164 (193)
Q Consensus        85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d  164 (193)
                      ++..||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+........++..   .+.-+++...++.+.+.. 
T Consensus       177 i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~l~~ll~~p~~~~~~~~~-  252 (283)
T TIGR01476       177 IMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVA---TIVFLLLVAQIYNQIKLF-  252 (283)
T ss_pred             HHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999988666544433322211   122223333433333322 


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHh
Q 029476          165 LDNFESTFGFYMLIWKLTFVEYIL  188 (193)
Q Consensus       165 ~~~~~a~~~fY~fiW~lf~~ey~l  188 (193)
                      .+++++...-++..++++++==++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~  276 (283)
T TIGR01476       253 LRDPQQNYVRYNATANPFYVLGML  276 (283)
T ss_pred             HhChHHhhHHhhhhcHHHHHHHHH
Confidence            236666777788888887754333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.80  E-value=2e-18  Score=154.36  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029476            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (193)
Q Consensus         5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (193)
                      +..++..+++++++++||  .||+|+||+++.+...+....+..++..    .....+   .++.+.+.+....++++.+
T Consensus       125 ~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~~~~~~~~----~~a~~g---~~~~~~~~l~~~~~l~~~~  195 (331)
T PRK12392        125 MVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSYGFITFLS----ANALFS---DIRPEVVWLAGLNFFMAIA  195 (331)
T ss_pred             HHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHHHHHHHHH----HHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence            334455567899999999  6999999999988776544444111111    112333   2455666777788899999


Q ss_pred             HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029476           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD  164 (193)
Q Consensus        85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d  164 (193)
                      .+++||+||+||||+.|+||+|+++|+|++.+++.....+..+..+..+..+...+-   ....-++++.++++|.+.  
T Consensus       196 ~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~l--  270 (331)
T PRK12392        196 LIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQL--  270 (331)
T ss_pred             HHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHH--
Confidence            999999999999999999999999999999999887776777766666666553322   223334444566666664  


Q ss_pred             CCChhHHHHH
Q 029476          165 LDNFESTFGF  174 (193)
Q Consensus       165 ~~~~~a~~~f  174 (193)
                      .+||.+-.+|
T Consensus       271 ~r~p~~~~~~  280 (331)
T PRK12392        271 YRDPKGGISF  280 (331)
T ss_pred             HhChhhhhHH
Confidence            3444443333

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.79  E-value=6.6e-18  Score=153.40  Aligned_cols=167  Identities=17%  Similarity=0.178  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029476            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (193)
Q Consensus         5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (193)
                      |..++..+++++++++||  .||+|+||++++++..+.+..+.+++  +.  +..+.|   .++...+.+..++++++.+
T Consensus       197 ~~~~~l~l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~lp~--~~--g~a~~g---~~s~~~illal~~~l~~la  267 (375)
T PLN00012        197 PIVFYLALGGSLLSYIYS--APPLKLKQNGWIGNYALGASYISLPW--WA--GQALFG---TLTPDVVVLTLLYSIAGLG  267 (375)
T ss_pred             HHHHHHHHHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHHHHHH--HH--HHHHcC---CCCHHHHHHHHHHHHHHHH
Confidence            444555567888999999  79999999999998765444442221  11  112223   3556667777888999999


Q ss_pred             HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029476           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD  164 (193)
Q Consensus        85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d  164 (193)
                      +++.||+||+||||+.|++|+|+++|+|++.+++..++.+.+...+.......   ......+.-.+.+.+++++.+. .
T Consensus       268 i~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~---~~~y~~~~~~l~l~~l~~~~~~-~  343 (375)
T PLN00012        268 IAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIG---KPYYALALLGLIIPQIFFQFKY-F  343 (375)
T ss_pred             HHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH-H
Confidence            99999999999999999999999999999999998777777664443222211   1122223333344555555553 3


Q ss_pred             CCChhHHHHHHHHHHHHHHH
Q 029476          165 LDNFESTFGFYMLIWKLTFV  184 (193)
Q Consensus       165 ~~~~~a~~~fY~fiW~lf~~  184 (193)
                      .+|+.++...|+..=+.++.
T Consensus       344 ~~~p~~~~~~~~~~a~~~~~  363 (375)
T PLN00012        344 LPDPVKNDVKYQASAQPFLV  363 (375)
T ss_pred             hcCHHHHHHHHHHHHHHHHH
Confidence            56999999999987776654

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.79  E-value=4.5e-18  Score=150.15  Aligned_cols=168  Identities=18%  Similarity=0.181  Sum_probs=117.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      +|+.++...++++++++||  .||.|+||++++++..+....+ ...++.  +   .+.|   .++...+......++++
T Consensus       127 ~~~~~~l~~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~~~~~~--~---a~~g---~~~~~~~l~~~~~~l~~  196 (306)
T TIGR02056       127 FPNVFVLALFGSFIAFIYS--APPLKLKQNGWLGNFALGASYIALPWWAG--H---ALFG---ELNPDIAVLTLIYSIAG  196 (306)
T ss_pred             chHHHHHHHHHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHHHHHHH--H---HHhC---CCcHHHHHHHHHHHHHH
Confidence            3556666678899999999  7999999999889876554444 222221  1   1222   34566667788888999


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK  162 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~  162 (193)
                      .++++.||++|+|+||+.|+||+|+++|+|++.+++..++..+|...+.........+..   .+.-.+....++++.+.
T Consensus       197 ~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~ll~ll~~p~~~~~~~~  273 (306)
T TIGR02056       197 LGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYA---AALVALIIPQITFQDKY  273 (306)
T ss_pred             HHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888887655444333211111   11122223445555443


Q ss_pred             ccCCChhHHHHHHHHHHHHHHHH
Q 029476          163 VDLDNFESTFGFYMLIWKLTFVE  185 (193)
Q Consensus       163 ~d~~~~~a~~~fY~fiW~lf~~e  185 (193)
                      + .+|++....+|+-.=++||+-
T Consensus       274 ~-~~~~~~~~~~~~~~~~~~~~~  295 (306)
T TIGR02056       274 F-LKDPLKNDVKYQASAQPFLVL  295 (306)
T ss_pred             H-HhChHhhCcchhhhhhHHHHH
Confidence            3 236666777888777777654

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.75  E-value=6.1e-17  Score=143.42  Aligned_cols=121  Identities=20%  Similarity=0.305  Sum_probs=93.3

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      +++..+...++++++++||  .||+++||++++++..+....+ +..++     ++...+ +..++...++....+++++
T Consensus       131 ~~~~~~l~l~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~-----g~~~~~-~~~~~~~~~l~~~~~~l~~  202 (314)
T PRK07566        131 GPWVFLAALLGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWA-----GAAAFG-AGLPSWPIVILALLYSLGA  202 (314)
T ss_pred             ChHHHHHHHHHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHH-----HHHHhc-cCCCCHHHHHHHHHHHHHH
Confidence            3455555667888899999  6999999999989876665544 22221     111222 2234556677778888899


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHH
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIA  132 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~  132 (193)
                      .+++..||++|+|+||+.|+||+|+++|+|++.+++..++.++|+..+..
T Consensus       203 ~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~  252 (314)
T PRK07566        203 HGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIAL  252 (314)
T ss_pred             HHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988888865433

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.74  E-value=3.5e-16  Score=137.43  Aligned_cols=174  Identities=18%  Similarity=0.166  Sum_probs=126.1

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      +++.+...++++++++.||  .||+|+|++|+ |...+....| ...+|.++. ++      ..++.+.+.......+++
T Consensus       115 ~~~~l~l~~~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g~~~vlg~~~~-~~------~~~~~~~~~~sl~~~l~~  184 (296)
T PRK05951        115 GIGAVTLALLGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWSHMLVMGLIYV-WL------GNLSSPNLLAGVPLGLLM  184 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHHH-Hh------CcccHHHHHHHHHHHHHH
Confidence            4556666678999999999  79999998876 8777777777 666666532 32      123445566777888888


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK  162 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~  162 (193)
                      ..+...|+++|+|+||+.|+||+|+++|+|++ ++...++..+|+..+......-.++......++.......+.++.+.
T Consensus       185 ~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~  263 (296)
T PRK05951        185 ALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRK  263 (296)
T ss_pred             HHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999 77667778888876665554433332333444444444566667777


Q ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHh
Q 029476          163 VDLDNFESTFGFYMLIWKLTFVEYIL  188 (193)
Q Consensus       163 ~d~~~~~a~~~fY~fiW~lf~~ey~l  188 (193)
                      .|.++++...+.++..=-++...+++
T Consensus       264 ~~~~~~~~~~~~~~~~g~l~~~~~~l  289 (296)
T PRK05951        264 FPPDPDEATVQLFMLFGYLYILATLL  289 (296)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHH
Confidence            77777777778877766666665543

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.73  E-value=3.8e-16  Score=136.05  Aligned_cols=123  Identities=20%  Similarity=0.212  Sum_probs=100.2

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      +++.++...++++++++||  .||.|+|++++ ++..+....| ....+.+ +.++      ..++.+.+.......+++
T Consensus       112 ~~~~~~~~~~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~~~~~~~-~~~~------~~~~~~~~~~~l~~~l~~  181 (293)
T PRK06080        112 GWWLLLLGLLCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLVIVLGTY-YLQA------GTVDSAVFLPALPCGLLI  181 (293)
T ss_pred             hHHHHHHHHHHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHHHHHHHH-HHhc------CCCCHHHHHHHHHHHHHH
Confidence            4566666677889999999  79999999987 8777666666 4444433 2221      235567788889999999


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS  136 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~  136 (193)
                      ..+...||++|+|+||+.|++|+|+++|+|++.++...++.++|+..+...+..
T Consensus       182 ~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        182 GAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             HHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999877666554

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.72  E-value=4.2e-16  Score=130.61  Aligned_cols=102  Identities=34%  Similarity=0.458  Sum_probs=83.5

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      +++.+....++.+.+++||   ||+|+||+|+.++.++....+ ....+.+.      .  ....+.+.+....+.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~  159 (257)
T PF01040_consen   91 GPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------A--GGDPPPPPFLLAIFFFLLI  159 (257)
T ss_pred             CchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------c--CCcccHHHHHHHHHHHHHH
Confidence            4566666677888889999   999999999999999888877 54444432      1  2233556667777778999


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHH
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFP  116 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~  116 (193)
                      ..+...+|++|+||||+.|.+|+|+++|+|++..
T Consensus       160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.72  E-value=6.6e-16  Score=133.80  Aligned_cols=151  Identities=15%  Similarity=0.138  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029476            6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (193)
Q Consensus         6 ~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (193)
                      ...+...++.+++++||     .|+||+|.++|.++....| ...+|..      ..+ .. .+.+.+.+....+++.++
T Consensus       106 ~~~~~~~~~~~~~~~Yt-----~~lK~~~~~g~~~vg~~~g~~~~~g~~------~~~-~~-~~~~~~~l~~~~fl~~~~  172 (276)
T PRK12882        106 LCLAIALFNSLLLVLYA-----ETLKGTPGLGNASVAYLTGSTFLFGGA------AVG-TE-GLLALLVLFALAALATLA  172 (276)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHHHHH------Hhc-cc-chHHHHHHHHHHHHHHHH
Confidence            33444456777899999     7999999999998877777 4333332      122 11 122334445566677889


Q ss_pred             HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029476           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD  164 (193)
Q Consensus        85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d  164 (193)
                      .+++||+||+||||+.|++|+|+++|+|++.+++.................  ...+.......-...+..++.+.+..|
T Consensus       173 ~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~l~~~~~~~~  250 (276)
T PRK12882        173 REIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL--STFGLWYLVLVAPADLVMLAAAYRSLK  250 (276)
T ss_pred             HHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999998877665555433321111  112223333322323344555666666


Q ss_pred             CCChhHH
Q 029476          165 LDNFEST  171 (193)
Q Consensus       165 ~~~~~a~  171 (193)
                      .+|+++.
T Consensus       251 ~~~~~~~  257 (276)
T PRK12882        251 KTDPTAS  257 (276)
T ss_pred             CCCHHHH
Confidence            6666544

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.71  E-value=1.7e-16  Score=140.87  Aligned_cols=148  Identities=22%  Similarity=0.225  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhcCC--CCc--chhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 029476           11 QILFFLCGCAYSLP--LPF--LRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVN   85 (193)
Q Consensus        11 ~~~~l~l~~~YS~~--~Pp--lRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i   85 (193)
                      ..++.+.++.||..  .+|  +|+|+.|.++++.++..+| ....+.    ++.  . . .+ .+...+..+.....+++
T Consensus       125 ~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~~--~-~-~~-~~~~~i~l~~~~~l~~~  195 (307)
T PRK13591        125 AFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GSY--C-G-SL-IPVGLIFLFFGVKLFIN  195 (307)
T ss_pred             HHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hhh--h-h-hH-HHHHHHHHHHHHHHHHH
Confidence            45788899999931  124  5999999999999988888 332211    111  0 0 01 11222333444445888


Q ss_pred             HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029476           86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL  165 (193)
Q Consensus        86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~  165 (193)
                      +++||++|+||||+.|.+|+|+++|++++.++...+..++|+..++.....-.++.+.+..-+-.+-...+|..++..|-
T Consensus       196 ~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~~~~  275 (307)
T PRK13591        196 SCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSPFEN  275 (307)
T ss_pred             HHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCCccc
Confidence            89999999999999999999999999999999999999999987766665555555654443445455667777666444


Q ss_pred             CC
Q 029476          166 DN  167 (193)
Q Consensus       166 ~~  167 (193)
                      ++
T Consensus       276 ~~  277 (307)
T PRK13591        276 EP  277 (307)
T ss_pred             Cc
Confidence            33

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.71  E-value=1.6e-15  Score=133.19  Aligned_cols=125  Identities=16%  Similarity=0.078  Sum_probs=105.5

Q ss_pred             CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029476            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (193)
Q Consensus         3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (193)
                      .+|+.+....++++.++.||  .||+++|++|+ |-.++....| +...|.+ +.|+      ..++.+.+..+....+.
T Consensus       104 ~~~~~l~lg~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~-yvqt------~~~~~~~~l~sl~~gl~  173 (285)
T TIGR02235       104 WQITVLALVGLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL-YAQS------QSFSLIPWKASILVGLA  173 (285)
T ss_pred             hhHHHHHHHHHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH-HHhC------CcCcHHHHHHHHHHHHH
Confidence            35788888889999999999  79999999998 8777777788 6555554 3343      35667777888999999


Q ss_pred             HHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029476           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSS  137 (193)
Q Consensus        82 ~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~  137 (193)
                      +..+...|+++|+|.||+.|.||+|+++|+|++.++...++..+|+..+.......
T Consensus       174 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~  229 (285)
T TIGR02235       174 TTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGF  229 (285)
T ss_pred             HHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999997765555443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.70  E-value=8.4e-16  Score=136.16  Aligned_cols=124  Identities=16%  Similarity=0.096  Sum_probs=105.4

Q ss_pred             CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029476            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (193)
Q Consensus         3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (193)
                      .+|+.+....+++++++.||  .||+|+|++|+ |-..+....| +...|.++ .|+      ..++...+.......+.
T Consensus       117 ~g~~~l~ig~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~y-v~t------~~~~~~~~~~sl~~gll  186 (304)
T PRK07419        117 SDWTVLGLVLLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAALY-SQT------PSWSLIPLAASIILGLA  186 (304)
T ss_pred             hcHHHHHHHHHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHH-Hhc------CCCCHHHHHHHHHHHHH
Confidence            46888888889999999999  79999999997 8887777788 66666643 332      34666778888899999


Q ss_pred             HHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 029476           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASS  136 (193)
Q Consensus        82 ~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~  136 (193)
                      +..+...||++|+|.||+.|.||+|+++|+|++.++...++..+|+..+......
T Consensus       187 ~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g  241 (304)
T PRK07419        187 TSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLG  241 (304)
T ss_pred             HHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999776655543

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.70  E-value=1.5e-15  Score=131.37  Aligned_cols=117  Identities=22%  Similarity=0.331  Sum_probs=89.5

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      ++...+...++.++++.||     .++||+|++++.++....+ ....|..      ..+ +  .+.+.+.+....++++
T Consensus       103 ~~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~~~~~~~~~~~~~~~~g~~------~~~-~--~~~~~~~l~~~~~~~~  168 (279)
T PRK12884        103 SPLAFLVVILVSVLGILYN-----WKLKEYGLIGNLYVAFLTGMTFIFGGI------AVG-E--LNEAVILLAAMAFLMT  168 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHH-----HhhccccchhHHHHHHHHHHHHHHHHH------HhC-C--CchHHHHHHHHHHHHH
Confidence            3555555667888999999     7899999999988777666 3333322      112 1  1224556667778899


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHh
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGA  134 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~  134 (193)
                      .+.++.||++|+|+||+.|++|+|+++|+|++.+++.......++..++...
T Consensus       169 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        169 LGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             HHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888888775554443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.69  E-value=3.3e-15  Score=130.32  Aligned_cols=167  Identities=22%  Similarity=0.298  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029476            6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (193)
Q Consensus         6 ~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (193)
                      ..++....++++.++|      .++||.+.+++.++..+.+ ....|...     +.+   ..+.+.+++..+..+++.+
T Consensus       117 ~~~~l~~~~~~l~~~Y------~~~Kr~~~~~~~~lg~~~~~~~~~g~~a-----~~~---~~~~~~~~l~~~~~l~~~~  182 (289)
T COG0382         117 LAFLLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAA-----VGG---SLPLLAWLLLLAAILWTLG  182 (289)
T ss_pred             HHHHHHHHHHHHHHHH------HHhhcCCchHHHHHHHHHHHHHHHHHHH-----HhC---ccchHHHHHHHHHHHHHHH
Confidence            3456667889999999      4899999999999998888 55555432     111   2456778889999999999


Q ss_pred             HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029476           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVD  164 (193)
Q Consensus        85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d  164 (193)
                      .+++||+||+||||+.|++|+|+++|+|++..++.... .........+....  ........++...+..+++|...+|
T Consensus       183 ~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  259 (289)
T COG0382         183 YDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAG--LLGLIYLLGLLVAALLLLYQILIVD  259 (289)
T ss_pred             HHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999988777 44443333333222  2223466677777788889999998


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhh
Q 029476          165 LDNFESTFGFYMLIWKLTFVEYILI  189 (193)
Q Consensus       165 ~~~~~a~~~fY~fiW~lf~~ey~l~  189 (193)
                      .++++....++..-...-...++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~  284 (289)
T COG0382         260 VRDPPACFALFDVNLLLGLLLFIGL  284 (289)
T ss_pred             ccChHHHHHHHHHhhHHHHHHHHHH
Confidence            8888787777777666655555443

>PLN02922 prenyltransferase

Probab=99.69  E-value=2.8e-15  Score=133.39  Aligned_cols=131  Identities=19%  Similarity=0.268  Sum_probs=104.4

Q ss_pred             CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcC-C---CCChHHHHHHHHH
Q 029476            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGR-P---FVITRPLILMGAI   77 (193)
Q Consensus         3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~-~---~~~~~~~~~~~~~   77 (193)
                      ++|++++...++++.++.||  .||+|+|++|+ |=+.+....| +...|.| +.|+...+. .   ..++.+.+...+.
T Consensus       121 ~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~v~g~y-~~~~~~~~~~~~~~~~~~~~~~l~slp  196 (315)
T PLN02922        121 GNIRVILLLAAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLATTAFY-LALASGAGGSEMAILPLTPTVLSASVL  196 (315)
T ss_pred             cChHHHHHHHHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHHHHHHH-HHhcccccccccccccccHHHHHHHHH
Confidence            56888888889999999999  79999999999 6555555566 4445543 334321110 0   1245677889999


Q ss_pred             HHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029476           78 MSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSS  137 (193)
Q Consensus        78 ~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~  137 (193)
                      ..+.+..+...||++|+|.||+.|.||+|+++|+|++.++...++..+|+..+...+...
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~  256 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKA  256 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999997776655543

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.67  E-value=4.7e-15  Score=130.11  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 029476            6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (193)
Q Consensus         6 ~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (193)
                      +.++...++++.+++||  .||.|+|++|+ |-..+....| +..+|.++ .|+      ..++...+..+....+.+..
T Consensus       110 ~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g~~y-vq~------~~~~~~~ll~sl~~g~l~~~  179 (284)
T TIGR00751       110 WFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLGTQY-LQA------HRVDWVGILPAVATGLLACA  179 (284)
T ss_pred             HHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHHHHH-Hhc------CCCCHHHHHHHHHHHHHHHH
Confidence            55666678999999999  79999999997 8887887888 66666543 333      24556666677888889999


Q ss_pred             HHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHh
Q 029476           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGA  134 (193)
Q Consensus        85 i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~  134 (193)
                      ++..|+++|+|+||+.|.+|+|+++|+|++.++...++..+|+..+....
T Consensus       180 il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~  229 (284)
T TIGR00751       180 VLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML  229 (284)
T ss_pred             HHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987665544

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.65  E-value=1.1e-14  Score=129.49  Aligned_cols=129  Identities=19%  Similarity=0.118  Sum_probs=98.6

Q ss_pred             CchHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhc-------CC-CCCh-----
Q 029476            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLG-------RP-FVIT-----   68 (193)
Q Consensus         3 gs~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~-------~~-~~~~-----   68 (193)
                      .+|+.+....++.+.++.||  .||.++|++| +|.+.+....| +..+|.+ +.|+....       ++ ..++     
T Consensus       112 ~g~~~l~igl~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~-yv~t~~~~~~~~~~~~~~~~~~~~~~~  187 (317)
T PRK13387        112 TSWLLLVIGLICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAV-YINTNTITIESLLFQGEMFTIQGNLIA  187 (317)
T ss_pred             hcHHHHHHHHHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHH-HHhcCCCchHHHHhcccchhhcchhHH
Confidence            45777888889999999999  7999999999 59888777777 5545543 23331100       00 0000     


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhh
Q 029476           69 -RPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGAS  135 (193)
Q Consensus        69 -~~~~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~  135 (193)
                       .+++.......+....++..||++|+|+||+.|.||+|+++|+|++.++...++.++|+..+.....
T Consensus       188 ~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~  255 (317)
T PRK13387        188 IIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM  255 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence             0123477888889999999999999999999999999999999999999999999999976554443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.62  E-value=1.5e-14  Score=126.91  Aligned_cols=113  Identities=19%  Similarity=0.326  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhh-hhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Q 029476            8 LLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTG-LPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNG   86 (193)
Q Consensus         8 ~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~-lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~   86 (193)
                      ...++..++++++||  .||+|+|++|+.+..+.. .. .++ ++-+ ..+      ....++..++++  .++++.+++
T Consensus       116 ~~~ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g-~~-~~~~~~~y-~~~------tg~~~~~~l~~a--~~l~~~~~~  182 (282)
T PRK12875        116 WPALLAFLVLSVEYS--APPLRFKTTPVLDSLSNG-LY-ILPGVAAY-ALV------SGSLPPLLAVAG--GWLWAMGMH  182 (282)
T ss_pred             HHHHHHHHHHHHHHc--CCCccchhccHHHHHHHH-HH-HHHHHHHH-HHH------cCCCcHHHHHHH--HHHHHHHHH
Confidence            344456789999999  799999999997764311 11 111 1111 111      123444443333  358999999


Q ss_pred             HHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 029476           87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAG  133 (193)
Q Consensus        87 i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~  133 (193)
                      ++||+||+|+||+.|+||+|+++|+|++.+++..+..++-...+.++
T Consensus       183 ~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        183 TFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998877776666555444

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.62  E-value=5.9e-14  Score=122.08  Aligned_cols=146  Identities=18%  Similarity=0.195  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 029476           12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD   90 (193)
Q Consensus        12 ~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kD   90 (193)
                      ..+.++...||   +   +||+..+++++.....+ .+..|+..     +.| ......+.+.+....++++.+.+++||
T Consensus       112 ~~~~~~~~~Y~---~---~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g-~~~~~~~~~ll~~~~~~w~~~~~~i~~  179 (282)
T TIGR01475       112 PLVLLVLIIYP---Y---TKRFTFLCHYVLGSTYGLAPLAGWVA-----VIG-TISFFLVAWLLGIGVGFWIAGFDLIYA  179 (282)
T ss_pred             HHHHHHHHHHh---h---HhccccccHHHHHHHHHHHHHHHHHH-----HhC-CccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788998   2   79999989887665555 33333321     212 211114445567778889999999999


Q ss_pred             CCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhH
Q 029476           91 LPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFES  170 (193)
Q Consensus        91 i~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a  170 (193)
                      +||+|+||+.|++|+|+++|+|++.+++.....+.++.....+......  .. -.++..+....++++.+.+|.+|+++
T Consensus       180 ~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g--~~-y~~~~~~~~~~l~~~~~~~~~~~~~~  256 (282)
T TIGR01475       180 IQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNG--YI-ALLALILIGLILAYEHYIVDPGDQSK  256 (282)
T ss_pred             HhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCc--HH-HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            9999999999999999999999999998888888877666666544322  22 12334444567778888888888765


Q ss_pred             HH
Q 029476          171 TF  172 (193)
Q Consensus       171 ~~  172 (193)
                      ..
T Consensus       257 ~~  258 (282)
T TIGR01475       257 IQ  258 (282)
T ss_pred             HH
Confidence            43

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.59  E-value=1.4e-13  Score=119.63  Aligned_cols=110  Identities=17%  Similarity=0.131  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029476            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (193)
Q Consensus         5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (193)
                      +.......++.++++.||     .++||++.+++.++....| ....|...     + + .   ....+.+....++++.
T Consensus       104 ~~~~~l~~~~~~~~~~Ys-----~~lKr~~~~~~~~vg~~~G~~~~~g~~~-----~-~-~---~~~~~~l~~~~f~~~~  168 (279)
T PRK09573        104 IYAFLIALLNSILLYLYA-----KDLKKTGLIGNLIVAYLTGLSFIFGGLA-----V-F-N---VLRIIILFLCAFFSTW  168 (279)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHHHHHHHH-----H-c-c---chHHHHHHHHHHHHHH
Confidence            344444556777899999     6899999999999988888 54444422     1 1 1   1223345556677888


Q ss_pred             HHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHH
Q 029476           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCA  129 (193)
Q Consensus        84 ~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~  129 (193)
                      ++++.||+||+|+||+.|++|+|+++|+|++.+++.....+.....
T Consensus       169 ~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~  214 (279)
T PRK09573        169 SREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLS  214 (279)
T ss_pred             HHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999876655555443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.54  E-value=2.7e-13  Score=120.01  Aligned_cols=153  Identities=20%  Similarity=0.173  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCC-----CCChHHHHHHHHHHHHHHHHH
Q 029476           12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRP-----FVITRPLILMGAIMSIFAFVN   85 (193)
Q Consensus        12 ~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~i   85 (193)
                      .+++++...|+     . +||+..++++.+....+ ....|...     +.|..     ...+.+.+.+....++|+.+.
T Consensus       125 ~~~~~~~~~Y~-----~-~KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~  193 (300)
T PRK13106        125 PIVALIAMSYP-----Y-MKRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGF  193 (300)
T ss_pred             HHHHHHHHHHh-----H-HhcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            34556677887     3 79999999988877777 44444422     11211     012223344455677899999


Q ss_pred             HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029476           86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL  165 (193)
Q Consensus        86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~  165 (193)
                      +++||.||+|+||+.|+||+|+++| |++.+++..+..++-......+.....  +.... .+-++....+.+|.+.+|.
T Consensus       194 d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~l--g~~y~-~~~~~~~~~l~~~~~~~~~  269 (300)
T PRK13106        194 DLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGL--GPIAI-AATILHGLIMAYAYYLASK  269 (300)
T ss_pred             HHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999 888888877776666655555543321  22211 1222334566677777766


Q ss_pred             CChhHHHHHHHHHHH
Q 029476          166 DNFESTFGFYMLIWK  180 (193)
Q Consensus       166 ~~~~a~~~fY~fiW~  180 (193)
                      + ++-.+.|.+..|.
T Consensus       270 ~-~~~~~~F~~n~~i  283 (300)
T PRK13106        270 K-GDFGRAFYYNIYS  283 (300)
T ss_pred             c-hHHHHHHHHccHH
Confidence            6 5556777665554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.54  E-value=4.2e-13  Score=118.09  Aligned_cols=155  Identities=19%  Similarity=0.110  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHHHHH
Q 029476            7 LLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITR-PLILMGAIMSIFAFVN   85 (193)
Q Consensus         7 l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~i   85 (193)
                      .+....+++++...|+     . +||+..++.+......+   ++...+. .++.| .  .+. +...+.....+|+.+-
T Consensus       116 ~~~l~~~~~~~~~~Y~-----~-~KR~t~~~~~~lg~~~~---~~~l~g~-~av~g-~--~~~~~~~~l~~~~~~W~~~~  182 (289)
T PLN02809        116 SRILGASSLLLVFTYP-----L-MKRFTFWPQAFLGLTFN---WGALLGW-AAVKG-S--LDPAVVLPLYASGVCWTLVY  182 (289)
T ss_pred             HHHHHHHHHHHHHHHh-----H-HHhcCcchHHHHHHHHH---HHHHHHH-HHHhC-C--CChHHHHHHHHHHHHHHHHH
Confidence            3445556788889998     3 99999988865333222   3332221 12223 1  222 2322455566678888


Q ss_pred             HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029476           86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL  165 (193)
Q Consensus        86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~  165 (193)
                      +++.+.||+|+||+.|++|+|+++|+|+..+++. +..+++...+..|...  ..+.... +++++.+..+++|.+.+|.
T Consensus       183 d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~--~~~~~~~-~~~~~~~~~l~~~~~~v~~  258 (289)
T PLN02809        183 DTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA--GLGWPYY-AGLAAAAGHLAWQIQTVDL  258 (289)
T ss_pred             HHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh--cCcHHHH-HHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999997777774 5555565555555433  2344433 4788888899999999999


Q ss_pred             CChhHHHH-HHHHH
Q 029476          166 DNFESTFG-FYMLI  178 (193)
Q Consensus       166 ~~~~a~~~-fY~fi  178 (193)
                      +|+++..+ |.+..
T Consensus       259 ~~~~~~~~~F~~n~  272 (289)
T PLN02809        259 SSRADCNRKFVSNK  272 (289)
T ss_pred             CCHHHHHHHHHhCC
Confidence            99887643 44433

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.53  E-value=6.4e-13  Score=115.23  Aligned_cols=102  Identities=21%  Similarity=0.273  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029476            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (193)
Q Consensus         5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (193)
                      +..+....++.+++++||     .|+|+++.+++..+....| ....|...     + + .  .+...+. ..+.+++.+
T Consensus       104 ~~~~~~~~~~~~~~~~Y~-----~~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~-~-~--~~~~~~~-~~~~fl~~~  168 (277)
T PRK12883        104 IEAFLFALGAYVLMFLYA-----WKLKPLPFIGNVVVALLTGATPIYGAIA-----V-G-R--IGLAGYL-AICAFLVNV  168 (277)
T ss_pred             HHHHHHHHHHHHHHHHHh-----hcccCCcchhhHHHHHHHHHHHHHHHHH-----h-c-c--ccHHHHH-HHHHHHHHH
Confidence            444555566778899999     6899999999998888887 43333321     1 2 1  2222222 233556678


Q ss_pred             HHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHH
Q 029476           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT  121 (193)
Q Consensus        84 ~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~l  121 (193)
                      .+++.||+||+||||+.|++|+|+++|+|++.+++...
T Consensus       169 ~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        169 AREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             HHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence            89999999999999999999999999999999876654

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.52  E-value=1e-12  Score=114.59  Aligned_cols=149  Identities=17%  Similarity=0.113  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029476            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (193)
Q Consensus         5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (193)
                      +..+....++++++..|+     . .||...++........+ ....|+.     ...|   .++.+.+.+....++++.
T Consensus       114 ~~~~~~~~~~~~~~~~Y~-----~-~Kr~~~~~~~~~g~~~~~~~l~~~~-----a~~g---~~~~~~~~l~~~~~~w~~  179 (285)
T PRK12847        114 KTTIYLSFIAVILIVLYP-----L-MKRFFYWPQLFLGFTFNMGILMAFA-----AVQN---QLDIEAILLYIGCIFWTI  179 (285)
T ss_pred             HHHHHHHHHHHHHHHhcc-----c-cccCCcccHHHHHHHHHHHHHHHHH-----HHcC---CCcHHHHHHHHHHHHHHH
Confidence            455566667888899998     3 77777766654333333 2122221     1112   345566677788899999


Q ss_pred             HHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 029476           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKV  163 (193)
Q Consensus        84 ~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~  163 (193)
                      +.++.+|+||+|+||+.|++|+|+++|+|++.+++.......++..+..-......+--.    ..++.+..++++.+.+
T Consensus       180 ~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~----~~~~~~~~l~~~~~~~  255 (285)
T PRK12847        180 GYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYL----AILAAAGIFYYQYKLL  255 (285)
T ss_pred             HHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988777666665443322221111111    2223345677777788


Q ss_pred             cCCChhHH
Q 029476          164 DLDNFEST  171 (193)
Q Consensus       164 d~~~~~a~  171 (193)
                      |.+|+++.
T Consensus       256 ~~~~~~~~  263 (285)
T PRK12847        256 DFDNPANC  263 (285)
T ss_pred             CCCCHHHH
Confidence            88876544

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.51  E-value=2.5e-12  Score=112.81  Aligned_cols=148  Identities=17%  Similarity=0.142  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 029476           11 QILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLK   89 (193)
Q Consensus        11 ~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~k   89 (193)
                      ..++++....|+      ..||+..++........+ ....|+..     +.|   .++.+.+.+....++++.+.++++
T Consensus       114 ~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~~l~g~~a-----~~g---~~~~~~~ll~~~~~~w~~~~~~i~  179 (284)
T PRK12888        114 APLAVAPLVVYP------YAKRFTNFPHAILGLAQAVGPVGAWIA-----VTG---TWSWPAVLLGLAVGLWIGGFDLIY  179 (284)
T ss_pred             HHHHHHHHHHHH------HhhcccchhhHHHHHHHHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            335556677887      368888877765444444 22223211     112   245556667778889999999999


Q ss_pred             cCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChh
Q 029476           90 DLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFE  169 (193)
Q Consensus        90 Di~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~  169 (193)
                      |+||+|+||+.|++|+|+++|+|++.+++..+..+.++..+..+......+.-.   .+-++.+..+.+|.+.+|.+|++
T Consensus       180 a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---~~~~~~~~~l~~~~~~~~~~~~~  256 (284)
T PRK12888        180 ACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---IGLAITAGAFAYEHAIVSPTDLS  256 (284)
T ss_pred             HhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHcCccCHH
Confidence            999999999999999999999999998777666666555444444332211111   22234556777888899998876


Q ss_pred             HH-HHHH
Q 029476          170 ST-FGFY  175 (193)
Q Consensus       170 a~-~~fY  175 (193)
                      .. +.|+
T Consensus       257 ~~~~~ff  263 (284)
T PRK12888        257 RVNRAFF  263 (284)
T ss_pred             HHHHHHH
Confidence            54 4644

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.48  E-value=2.9e-12  Score=111.85  Aligned_cols=150  Identities=18%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      ++.......+++++.+.||     . .||+..++........+ ....|++     ++.|   .++.+.+.+....++++
T Consensus       108 ~~~~~~l~~~~~~~~~~Y~-----~-~Kr~~~~~~~~~g~~~~~~~~~g~~-----a~~g---~~~~~~~ll~~~~~lw~  173 (281)
T TIGR01474       108 NPLTILLGVASLALVATYP-----F-MKRITYWPQLVLGLAFGWGALMGWA-----AVTG---DLSTAAWVLYLANILWT  173 (281)
T ss_pred             hHHHHHHHHHHHHHHHHhc-----h-hcccccccHHHHHHHHHHHHHHHHH-----HHcC---CCcHHHHHHHHHHHHHH
Confidence            3445556667888899998     3 89988877765443333 2222321     1222   34455555667788899


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK  162 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~  162 (193)
                      .+.++++|+||+|+||+.|++|+|+++|+|++.+.+......... ....+....  .+.... ++-.+....+.++...
T Consensus       174 ~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~~  249 (281)
T TIGR01474       174 LGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILL-LALAGLIAG--LGPVYY-LGLAAAALLLIRQIAT  249 (281)
T ss_pred             HHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHH-HHHHHHHhC--CcHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999865544433332333 233333222  122222 2222334555566667


Q ss_pred             ccCCChhHH
Q 029476          163 VDLDNFEST  171 (193)
Q Consensus       163 ~d~~~~~a~  171 (193)
                      +|.+|+++.
T Consensus       250 ~~~~~~~~~  258 (281)
T TIGR01474       250 LDIRDPENC  258 (281)
T ss_pred             hCCCCHHHH
Confidence            676666543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.47  E-value=6.1e-12  Score=110.65  Aligned_cols=145  Identities=21%  Similarity=0.243  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 029476            8 LLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL   87 (193)
Q Consensus         8 ~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i   87 (193)
                      .....++++....|+     . .||+..++........+..+++-+.    ++.|   .++.+.+.+....++|..+.++
T Consensus       114 ~~l~~~~~~~~~~Y~-----~-~Kr~t~~~~~~~g~~~~~~~l~g~~----a~~g---~~~~~~~ll~~~~~lw~~~~~~  180 (291)
T PRK12886        114 LYLSPPALFFLLLYS-----Y-CKRFTALAHVVLGFCLALAPLGAWI----AIRG---TIELPAILLGLAVLFWVAGFDI  180 (291)
T ss_pred             HHHHHHHHHHHHHHh-----h-hhccccccHHHHHHHHHHHHHHHHH----HHcC---CCcHHHHHHHHHHHHHHHHHHH
Confidence            333445677789999     2 7999998876555444422322221    1112   2345556667777889999999


Q ss_pred             HhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 029476           88 LKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDN  167 (193)
Q Consensus        88 ~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~  167 (193)
                      ++++||.|+||+.|++|+|+++|++++.+++.......+......+.....  +....+ +-++....+.++.+.++.+|
T Consensus       181 ~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~-~~~~~~~~~l~~~~~~~~~~  257 (291)
T PRK12886        181 LYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL--GPWFLA-GLAVTGILLLYEHWLLRGGD  257 (291)
T ss_pred             HHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHH-HHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999998876666666655555543321  111111 11122233335667777676


Q ss_pred             h
Q 029476          168 F  168 (193)
Q Consensus       168 ~  168 (193)
                      +
T Consensus       258 ~  258 (291)
T PRK12886        258 L  258 (291)
T ss_pred             h
Confidence            3

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.47  E-value=9.7e-12  Score=110.32  Aligned_cols=174  Identities=18%  Similarity=0.183  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHHH
Q 029476            9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITR--PLILMGAIMSIFAFVN   85 (193)
Q Consensus         9 ~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~i   85 (193)
                      ....+++++...||     . +||+.++.+.......+ ....++.     ++.+.+..+..  ..++.+...+++..+.
T Consensus       120 ~l~~~~~~~~~iY~-----~-~KR~t~~~~~vLGl~~~~~~l~~~~-----Av~~~~~~~~l~~~~~lw~~~~~~~~~g~  188 (300)
T PRK12876        120 SLAVLSTLLMIIYP-----Y-TKRVTFLCHWILGLVYYLAILMNFF-----AIIETPLSFSLFCMASLWGISFGMIIAAN  188 (300)
T ss_pred             HHHHHHHHHHHHHH-----h-HhcCCchhHHHHHHHHHHHHHHHHH-----HHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34446777778998     4 99999988864333333 2222221     22231111100  2233344556677788


Q ss_pred             HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029476           86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL  165 (193)
Q Consensus        86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~  165 (193)
                      +++++.||+|+||+.|++|+|+++|++++.+++..+..+.-+..+..+......+.-...++.-........+|.+.+|.
T Consensus       189 DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~~~  268 (300)
T PRK12876        189 DIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLIDK  268 (300)
T ss_pred             HHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999998877776666555544445544332221111122212222334566566677


Q ss_pred             CChhHHHHHHHH-HHH--HHHHHHHhhhhcC
Q 029476          166 DNFESTFGFYML-IWK--LTFVEYILIHFLR  193 (193)
Q Consensus       166 ~~~~a~~~fY~f-iW~--lf~~ey~l~p~~~  193 (193)
                      ++++.+..|++. .|-  .+++..+.-|.+|
T Consensus       269 ~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~~  299 (300)
T PRK12876        269 KKSTLEQKFFLGNIYLALSFFVNMIGLFLLR  299 (300)
T ss_pred             CchHHHHHHHHhcCHHHHHHHHHHHHHHccC
Confidence            767666554443 543  5566665555544

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.46  E-value=5.9e-12  Score=110.90  Aligned_cols=149  Identities=14%  Similarity=0.061  Sum_probs=100.2

Q ss_pred             HHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 029476           16 LCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDV   94 (193)
Q Consensus        16 ~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~Dv   94 (193)
                      .....|+     ..+||+..+.+..+....| ....|+.     ++.| ...+....+.+....++|+.+-++++|.||+
T Consensus       116 ~~l~~~y-----p~~KR~t~~~~~~lG~~~g~~~l~g~~-----Av~g-~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~  184 (286)
T PRK12895        116 IFLFIID-----PFLKRYTAWRHIYMGSIIGLGVLAGYL-----AVIP-AFPYNLLIYIIFISSSLWIAGFDIIYVIPDI  184 (286)
T ss_pred             HHHHHHH-----HHHHhCccccHHHHHHHHHhHHHHHHH-----HHcC-CCCchHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            3344555     4899999988876665555 3222331     2222 2222233445667788899999999999999


Q ss_pred             hhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhHH-HH
Q 029476           95 EGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFEST-FG  173 (193)
Q Consensus        95 eGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a~-~~  173 (193)
                      |+||+.|++|+|+++|+|++.+++..+..++....+..|....   +.. --++-++.+..+.+|.+.+|.+|+++. ..
T Consensus       185 e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~~~-y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~  260 (286)
T PRK12895        185 EYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---TLW-YLAALIIIYTLVIYQHLIIDPRNPINKRMS  260 (286)
T ss_pred             hhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---hHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            9999999999999999999988876666665555555554432   222 223445556778889899999888776 44


Q ss_pred             -HHHHHH
Q 029476          174 -FYMLIW  179 (193)
Q Consensus       174 -fY~fiW  179 (193)
                       |-+.-|
T Consensus       261 ~F~~N~~  267 (286)
T PRK12895        261 FFNANSF  267 (286)
T ss_pred             HHHHcCH
Confidence             444433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.44  E-value=1.1e-11  Score=109.04  Aligned_cols=146  Identities=22%  Similarity=0.194  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 029476           12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD   90 (193)
Q Consensus        12 ~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kD   90 (193)
                      ...++....||     . +||+..++.+......+ ....|+.     ++.|   ..+.+.+.+....++|+.+.+++++
T Consensus       123 ~~~~~~~~~Y~-----~-~KR~t~~~~~~~g~~~~~~~l~G~~-----av~g---~~~~~~~~l~~~~~~w~~~~~~~~a  188 (291)
T PRK12874        123 FPFLIVLGGYS-----Y-FKRFSSLAHLVLGLSLGLAPIAGVV-----AVLG---EIPLWSVFLALGVMFWVAGFDLLYS  188 (291)
T ss_pred             HHHHHHHHHHh-----h-hcccccccHHHHHHHHHHHHHHHHH-----HHcC---CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788999     2 79999988876665555 3333332     2222   2344445566677899999999999


Q ss_pred             CCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhH
Q 029476           91 LPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFES  170 (193)
Q Consensus        91 i~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a  170 (193)
                      ++|+|+||+.|++|+|+++|+|++.+++.....+..+.....+......+-   ..++-.+.+..+++|.+.++.+++++
T Consensus       189 ~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (291)
T PRK12874        189 LQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLF---AYLGVIVSALILLYEHYLVRKDFKKI  265 (291)
T ss_pred             hccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            999999999999999999999999887655444433333333322221111   22233344466777777776666655


Q ss_pred             HHHH
Q 029476          171 TFGF  174 (193)
Q Consensus       171 ~~~f  174 (193)
                      .+.|
T Consensus       266 ~~~f  269 (291)
T PRK12874        266 DKAF  269 (291)
T ss_pred             HHHH
Confidence            4443

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.43  E-value=4.7e-12  Score=111.27  Aligned_cols=152  Identities=18%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 029476           10 NQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLL   88 (193)
Q Consensus        10 ~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~   88 (193)
                      ....++++...|+     . .||+..++.+......+ .+..|+.     .+.|   ..+.+.+.+....++++.+.+++
T Consensus       120 l~~~~~~~~~~Y~-----~-~KR~t~~~~~~lg~~~~~~~l~g~~-----a~~g---~~~~~~~~l~~~~~lw~~~~d~~  185 (290)
T PRK12870        120 LCVAAVPVIFLYP-----L-AKRVFPVPQLVLAIAWGFAVLISWS-----AVTG---HLDLGTWLLWAATVFWTLGFDTV  185 (290)
T ss_pred             HHHHHHHHHHHhh-----h-hhhccccceeeehHHHHhHHHHHHH-----HHcC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            3445667788998     3 56666666654444444 3222221     1212   23455566777889999999999


Q ss_pred             hcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc--cCC
Q 029476           89 KDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKV--DLD  166 (193)
Q Consensus        89 kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~--d~~  166 (193)
                      +++||+|+||+.|++|+|+++|+|++.+++.... +........+....  .+.... .+-.+....+.+|...+  |.+
T Consensus       186 ~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~y~-~~~~~~~~~l~~~~~~~~~~~~  261 (290)
T PRK12870        186 YAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFA-LTVGFLAILGVLLE--LHLPFW-IGLAIAAVLWARQYRRLRQANL  261 (290)
T ss_pred             HHhhhHhhHHHCCCcchhHHhccccHHHHHHHHH-HHHHHHHHHHHHhC--CcHHHH-HHHHHHHHHHHHHHHHhcccCC
Confidence            9999999999999999999999999988776322 22222223333222  111111 12223335556666666  777


Q ss_pred             ChhHH-HHHHHHHH
Q 029476          167 NFEST-FGFYMLIW  179 (193)
Q Consensus       167 ~~~a~-~~fY~fiW  179 (193)
                      |++.. +-|.+..|
T Consensus       262 ~~~~~~~~F~~n~~  275 (290)
T PRK12870        262 PPLAYGQLFLQNVW  275 (290)
T ss_pred             ChHHHHHHHHHhhH
Confidence            77655 44444444

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.41  E-value=2.2e-11  Score=106.27  Aligned_cols=151  Identities=15%  Similarity=0.114  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Q 029476            8 LLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNG   86 (193)
Q Consensus         8 ~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~   86 (193)
                      .+...+++++.+.|+     . .||+..++.+......| .+..|+..  +    .  ..++.+.+.+....+++.....
T Consensus       114 ~~l~~~~~~~~~~Y~-----~-~Kr~~~~~~~~~g~~~g~~~~~g~~a--~----~--~~~~~~~~~l~~~~~~w~~~~~  179 (282)
T PRK12848        114 IWLSVAALALAWIYP-----F-MKRYTHLPQVVLGAAFGWGIPMAFAA--V----Q--GSVPLEAWLLFLANILWTVAYD  179 (282)
T ss_pred             HHHHHHHHHHHHHHH-----h-HHhcCcccHHHHHHHHHHHHHHHHHH--H----h--CCCcHHHHHHHHHHHHHHHHHH
Confidence            334446677788996     3 57777666665444444 33333321  1    1  2344555666677788888889


Q ss_pred             HHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 029476           87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLD  166 (193)
Q Consensus        87 i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~  166 (193)
                      ..++++|.|+||+.|++|+|+++|+|++.+++.. ..+........+.....  +.... ++-.+....+.++.+.+|.+
T Consensus       180 ~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~y~-~~~~~~~~~~~~~~~~~~~~  255 (282)
T PRK12848        180 TQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL-QLATLALLAWAGWLLGL--GWAYY-WGLLVAAALFVYQQKLIRDR  255 (282)
T ss_pred             HHHHhccHhhHHHcCCccccHHhccccHHHHHHH-HHHHHHHHHHHHHHhcC--cHHHH-HHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999998887643 33333323333332221  22211 22234446677778888888


Q ss_pred             ChhHH-HHHHH
Q 029476          167 NFEST-FGFYM  176 (193)
Q Consensus       167 ~~~a~-~~fY~  176 (193)
                      |+++. +.|++
T Consensus       256 ~~~~~~~~F~~  266 (282)
T PRK12848        256 EREACFKAFLN  266 (282)
T ss_pred             CHHHHHHHHHh
Confidence            87654 44444

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.35  E-value=4.3e-11  Score=106.09  Aligned_cols=110  Identities=16%  Similarity=0.188  Sum_probs=80.9

Q ss_pred             HHHHHHHHHh-----cCCCCcchhhhhhhhhHHHHHHHhh-hhhhh--HHH-HHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476           12 ILFFLCGCAY-----SLPLPFLRWKSHTFMAPLCLVITMG-LTGLP--FYM-HTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus        12 ~~~l~l~~~Y-----S~~~PplRlKr~p~l~~l~I~~v~~-iv~lg--~~~-h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      ....+..+.|     +     .++|+.|+.+|+.++...+ .+..|  ++. .++....|.| ......+.+.+..++.+
T Consensus       115 i~~~~i~~lY~~lm~a-----~~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~  188 (299)
T PRK13592        115 VGWFLFLYIYGTLMSF-----WFFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPS  188 (299)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHH
Confidence            3556678899     8     8999999999999999998 55333  221 1122222322 12222245567888899


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHH
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCA  129 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~  129 (193)
                      .++|+.||+|| ||||++ .+|+|+++|+|++.+++..+..+..+..
T Consensus       189 l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s  233 (299)
T PRK13592        189 LIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTN  233 (299)
T ss_pred             HHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHh
Confidence            99999999999 899976 9999999999999999998877766643

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.34  E-value=1.3e-10  Score=103.44  Aligned_cols=154  Identities=16%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      +|+.+....+++++...|+     . .||+...........-+ ....|++  .+   .|   .++.+.+.+....++++
T Consensus       140 ~~~~~~l~~~~~~~~~~Y~-----~-~KR~t~~~~~~~Gl~~~~~~l~g~~--a~---~g---~~~~~~~~l~~~~~~w~  205 (314)
T PRK12878        140 NWFAIALGIASLAIVAAYP-----F-MKRITWWPQFFLGLAFSWGALMGWA--AH---FG---SLSLAAVLLYAGSIAWT  205 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHH-----H-HHhcCCcchHHHHHHHHHHHHHHHH--HH---hC---CCchHHHHHHHHHHHHH
Confidence            3555556667888899998     2 77755544332211122 1112321  11   12   23444455666778899


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK  162 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~  162 (193)
                      .+.+.+++++|+|+||+.|++|+|+++|++++.+++...........+ .+......+.-.+..+.   +...+.+|.+.
T Consensus       206 ~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~---~~~~l~~~~~~  281 (314)
T PRK12878        206 IGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGL-AFWLAGVPLLALLGLLA---AAAHLAWQIAR  281 (314)
T ss_pred             HHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHH-HHHHhcCcHHHHHHHHH---HHHHHHHHHHH
Confidence            999999999999999999999999999999999887555544443322 22222211211212222   22345677777


Q ss_pred             ccCCChhHHHHHH
Q 029476          163 VDLDNFESTFGFY  175 (193)
Q Consensus       163 ~d~~~~~a~~~fY  175 (193)
                      +|.+|+++.+.++
T Consensus       282 ~~~~~~~~~~~~F  294 (314)
T PRK12878        282 LDIDDPDQCLRLF  294 (314)
T ss_pred             cccCChHHHHHHH
Confidence            7777776544433

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.31  E-value=1.2e-10  Score=102.85  Aligned_cols=101  Identities=13%  Similarity=0.062  Sum_probs=70.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 029476           67 ITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTI  146 (193)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~  146 (193)
                      .+.+.+....+.++++.+.++.||++|.|+|++.|++|+|+++|++++.++...+..+..+..+  +...  ..+.....
T Consensus       173 ~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~  248 (297)
T PRK12871        173 PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALY  248 (297)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHH
Confidence            4455666777888999999999999999999999999999999999998776655555554333  2222  22222222


Q ss_pred             HHHHHHHHHHHHHhhhccCCChhHH
Q 029476          147 IGHSILALILWIQSKKVDLDNFEST  171 (193)
Q Consensus       147 ~~h~~l~~~l~~~~~~~d~~~~~a~  171 (193)
                      ..-++.+..+.+|.+..+.+|+++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~  273 (297)
T PRK12871        249 GFLAGFVLLAGANLYLWKEKSQDAG  273 (297)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            2224455567777787777776653

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.24  E-value=8.5e-10  Score=97.98  Aligned_cols=168  Identities=20%  Similarity=0.166  Sum_probs=116.9

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 029476            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (193)
Q Consensus         4 s~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (193)
                      +|..++...++++.|+.|+  -+|.++++.|+ |=+......| +...|.+ +.|      .+.++......++...+.+
T Consensus       120 ~~~~l~lG~l~~~~g~~YT--gGp~PlgY~gL-GEi~~~vffG~l~v~g~~-yiq------t~~~~~~~ll~slp~gil~  189 (303)
T COG1575         120 DWLVLLLGLLCIAAGILYT--GGPFPLGYMGL-GEIFVGVFFGPLIVLGAY-YIQ------TGRLSWAILLPSLPVGILI  189 (303)
T ss_pred             hhHHHHHHHHHHHheeeec--cCCcCcccCCH-HHHHHHHHHHHHHHHHHH-HHh------cccchHHHHHHHHHHHHHH
Confidence            4565677779999999999  69999999999 6554444556 4444443 233      2345667888889999999


Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK  162 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~  162 (193)
                      ..+...|+++|+|-|++.|.+|+|+++|++++..+-..++..+|+..++..+....++... ..+.   .+....+..|.
T Consensus       190 ~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~l-l~ll---~~Pl~ir~~r~  265 (303)
T COG1575         190 ANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGL-LFLL---ALPLAIRAARP  265 (303)
T ss_pred             HHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHH-HHHH---HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997766444333222222 2111   22233333333


Q ss_pred             ccC-CChh------HHHHHHHHHHHHHHHH
Q 029476          163 VDL-DNFE------STFGFYMLIWKLTFVE  185 (193)
Q Consensus       163 ~d~-~~~~------a~~~fY~fiW~lf~~e  185 (193)
                      +-- ++|.      .+.+.-+.+|.+-++-
T Consensus       266 v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~  295 (303)
T COG1575         266 VRQNQVPATLVPMLKNTVKANLLWNLLLAV  295 (303)
T ss_pred             HHhccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            211 2222      3456677888765543

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.23  E-value=1.2e-09  Score=95.45  Aligned_cols=155  Identities=13%  Similarity=0.125  Sum_probs=92.9

Q ss_pred             HHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 029476           13 LFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDL   91 (193)
Q Consensus        13 ~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi   91 (193)
                      ..++....||     .++||+++ .+..+....| ..+++-+.. ++   |   .++.+.+.+....+++..+.....+.
T Consensus       115 ~~~~~~~~Yt-----~~lKr~~~-~~~~v~~~~g~~~~l~g~~a-~~---g---~~~~~~~ll~~~~~~w~~~~~~~l~~  181 (279)
T PRK12869        115 GWFFYAVVYT-----IWLKPRTW-LNIVIGGFAGNAAALAGYAS-GT---G---SLDLEAVLLSFLIYLWTPGHIWSLAL  181 (279)
T ss_pred             HHHHHHhhhC-----cccccCCh-HHHHHHHHHHHHHHHHHHHH-Hh---C---CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778899     79999998 4766666666 444433321 11   2   34455566677777788887766788


Q ss_pred             CChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChhHH
Q 029476           92 PDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNFEST  171 (193)
Q Consensus        92 ~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~~a~  171 (193)
                      +|.|.||+.|++|+|+++|+|++.+.+.....+.-......+.   ...+.......-...+.++..+.+..+.++++  
T Consensus       182 ~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~---~~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~--  256 (279)
T PRK12869        182 KYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL---YYIGLIGLILVAILSAALMATSIRALLNPTKE--  256 (279)
T ss_pred             HhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHHhhCCChH--
Confidence            8999999999999999999999988766554433332222222   11223323222223334555655665444433  


Q ss_pred             HHHHHHHHHHHHHH
Q 029476          172 FGFYMLIWKLTFVE  185 (193)
Q Consensus       172 ~~fY~fiW~lf~~e  185 (193)
                      ..+.+|.+.++|.-
T Consensus       257 ~~~~~f~~s~~~l~  270 (279)
T PRK12869        257 EAWKMFKASSPYLA  270 (279)
T ss_pred             HHHHHHHHHHHHHH
Confidence            23344555555443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.05  E-value=1.1e-08  Score=90.04  Aligned_cols=149  Identities=13%  Similarity=0.046  Sum_probs=85.7

Q ss_pred             HHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hh-hhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 029476           17 CGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LT-GLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDV   94 (193)
Q Consensus        17 l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv-~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~Dv   94 (193)
                      ....||     .++||++. ++..+....+ .- ..|++.     +.|   .++.+.+++....+++.........++|.
T Consensus       127 ~~~~Ys-----~~lKr~~~-~~~~v~~~~g~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~  192 (296)
T PRK04375        127 YVVVYT-----LWLKRRTP-QNIVIGGAAGAMPPLIGWAA-----VTG---SLSWEALILFLIIFLWTPPHFWALAIFRK  192 (296)
T ss_pred             HHHHhc-----cchhcCCc-cchHHHHHHHHhHHHHHHHH-----hCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466898     68999995 7777776665 32 222211     112   34555566677788888777766667778


Q ss_pred             hhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCh-hHHHH
Q 029476           95 EGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDNF-ESTFG  173 (193)
Q Consensus        95 eGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~~-~a~~~  173 (193)
                      |.||+.|++|+|+++|+|++.+++.....+.-...++......  .+.......-.+-+..+.++.+.++.+|+ .+.+.
T Consensus       193 ~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  270 (296)
T PRK04375        193 DDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGM--AGLLYLVVALLLGAWFLYYAWRLYRKDDRKWARKL  270 (296)
T ss_pred             hhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHH
Confidence            8899999999999999999888665444433332232222211  11111111111222334444555555544 34556


Q ss_pred             HHHHHHHH
Q 029476          174 FYMLIWKL  181 (193)
Q Consensus       174 fY~fiW~l  181 (193)
                      |+.-.|-.
T Consensus       271 F~~s~~~~  278 (296)
T PRK04375        271 FRYSINYL  278 (296)
T ss_pred             HHHHHHHH
Confidence            66655543

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.05  E-value=9.5e-09  Score=91.06  Aligned_cols=156  Identities=13%  Similarity=0.043  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 029476            9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL   87 (193)
Q Consensus         9 ~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i   87 (193)
                      ....++++....|+     . .||+-....+......+ -...|+     .++.| ...+....+++....++|+.+-++
T Consensus       121 ~l~~~~~~~~~~Y~-----~-~KR~t~~~~~vlg~~~a~~~l~gw-----~Av~g-~~~~~~~~l~l~~~~~~W~~~~d~  188 (294)
T PRK12873        121 SLAFLALPPILIYP-----S-AKRWFAYPQAILALCWGFAVLIPW-----AAAEG-SLNGGWPLLFCWLATLLWTFGFDT  188 (294)
T ss_pred             HHHHHHHHHHHHHH-----H-HHhccccchHHHHHHHHhHHHHHH-----HHHhC-CCchhHHHHHHHHHHHHHHHHHHH
Confidence            33345566788998     3 77776655543332222 112222     12223 222222344445677889999999


Q ss_pred             HhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 029476           88 LKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDLDN  167 (193)
Q Consensus        88 ~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~~~  167 (193)
                      +.+++|.|+||+.|++|+|+++|++ +...+..+..+........|.....  +.... ++-++.+..+.+|.+.+|.++
T Consensus       189 iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l--~~~y~-~~~~~~~~~l~~~~~~~~~~~  264 (294)
T PRK12873        189 VYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQV--GFIFW-PFWLIASIGMQRDILKLFPEK  264 (294)
T ss_pred             HHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhCcCc
Confidence            9999999999999999999999974 5555555555554444444544332  22221 122233456667778888776


Q ss_pred             h--h-HHHHHHHHHHH
Q 029476          168 F--E-STFGFYMLIWK  180 (193)
Q Consensus       168 ~--~-a~~~fY~fiW~  180 (193)
                      +  + -.+.|++..|-
T Consensus       265 ~~~~~c~~~F~~n~~~  280 (294)
T PRK12873        265 QSIKTIGNHFSNQVIL  280 (294)
T ss_pred             ccHHHHHHHHHhccHH
Confidence            3  3 34777766663

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.04  E-value=2.5e-08  Score=86.75  Aligned_cols=159  Identities=16%  Similarity=0.043  Sum_probs=88.3

Q ss_pred             HHHHHHHHHH-HHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 029476            8 LLNQILFFLC-GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVN   85 (193)
Q Consensus         8 ~~~~~~~l~l-~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i   85 (193)
                      .+...+++++ +++||     ..+||++.. +..+....| ..+++-+. .++   |   .++.+.+.+....+++...-
T Consensus       108 ~~l~~~~~~~~~~~Yt-----~~lKr~~~~-~~~v~~~~g~~~~l~g~~-a~~---g---~~~~~~~~l~~~~~~w~~~~  174 (280)
T TIGR01473       108 ALLGLFGIFFYVIVYT-----IWLKRRTPQ-NTVIGGFAGAVPPLIGWA-AVT---G---SISLGAWLLFAIIFLWQPPH  174 (280)
T ss_pred             HHHHHHHHHHHHhhcC-----hhhccCCch-hHHHHHHHHHHHHHHHHH-Hhc---C---CCCHHHHHHHHHHHHHHHHH
Confidence            3333455544 78999     568998885 555555555 33333321 111   2   23444555555666666665


Q ss_pred             HHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 029476           86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKKVDL  165 (193)
Q Consensus        86 ~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~~d~  165 (193)
                      ...-..+|.|.||+.|++|+|+++|+|++.+++............+.+....  .+......+-.+.+..+.++.+..|.
T Consensus       175 ~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~  252 (280)
T TIGR01473       175 FWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKFYRD  252 (280)
T ss_pred             HHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4445678999999999999999999999887766544443333333232211  12222222222233445556666655


Q ss_pred             C-Ch-hHHHHHHHHHHHH
Q 029476          166 D-NF-ESTFGFYMLIWKL  181 (193)
Q Consensus       166 ~-~~-~a~~~fY~fiW~l  181 (193)
                      + |+ ++.+.|+.-.|-+
T Consensus       253 ~~~~~~~~~~f~~s~~~~  270 (280)
T TIGR01473       253 PTDRKKARKLFKFSLIYL  270 (280)
T ss_pred             CCcHHHHHHHHHHHHHHH
Confidence            5 33 2445555554443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=98.91  E-value=1.8e-07  Score=83.12  Aligned_cols=90  Identities=13%  Similarity=0.082  Sum_probs=67.2

Q ss_pred             HHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 029476           17 CGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVE   95 (193)
Q Consensus        17 l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~Dve   95 (193)
                      ...+||     .++||+++.++.+.....+ -...|+.      +.+  ...+...+.+...+++|...-....+++|.|
T Consensus       130 ~~~~Yt-----~~lKr~t~~~~~vgg~~ga~p~l~G~~------a~~--g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~  196 (306)
T PRK13362        130 YVGVYS-----LYLKRNSVYGTLVGSLSGAMPPVVGYC------AVT--GQFDAGALILLLMFSLWQMPHSYAIAIFRFN  196 (306)
T ss_pred             HHHHHh-----HHHhccCcHhHHHHHHHHHHHHHHHHH------HHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            467899     8999999988775444444 2222221      112  2345566777888888999988889999999


Q ss_pred             hhHhcCCcchhHhhchhHHHHHHH
Q 029476           96 GDKKFGMNTLCVLLGKEKVFPLCV  119 (193)
Q Consensus        96 GDr~~Gi~Tl~v~lG~~~~~~l~~  119 (193)
                      .|++.|++|+|++.|+|++.+...
T Consensus       197 Dy~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        197 DYAAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             hHHHCCCeeeceecChHHHHHHHH
Confidence            999999999999999999987543

>PLN02776 prenyltransferase

Probab=97.08  E-value=0.11  Score=47.42  Aligned_cols=91  Identities=11%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             HHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 029476           18 GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEG   96 (193)
Q Consensus        18 ~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~i~kDi~DveG   96 (193)
                      ...|+     . +||+..+ |..+.++.| +-+++-+.    ++.|   .++.+.+.+....++|...=-..=...|-|-
T Consensus       113 ~~vYt-----~-lKR~t~~-~~~lG~~~Ga~ppL~Gw~----Avtg---~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dD  178 (341)
T PLN02776        113 AFVYT-----P-LKQIHPA-NTWVGAVVGAIPPLMGWA----AASG---QLDAGAMVLAAALYFWQMPHFMALAYMCRDD  178 (341)
T ss_pred             HHHHH-----h-HccCCch-hHHHHHHHHHHHHHHHHH----HHcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            44677     3 9999975 455555555 33332221    2222   3445555666666667662211112233347


Q ss_pred             hHhcCCcchhHhh--chhHHHHHHHHHH
Q 029476           97 DKKFGMNTLCVLL--GKEKVFPLCVNTM  122 (193)
Q Consensus        97 Dr~~Gi~Tl~v~l--G~~~~~~l~~~ll  122 (193)
                      |++.|++.+|+.-  |++.+..+.....
T Consensus       179 y~~ag~pmlpv~~~~g~~ta~~i~~~~~  206 (341)
T PLN02776        179 YAAGGYRMLSLADATGRRTALVALRNCL  206 (341)
T ss_pred             HHhCCCcccCccccchHHHHHHHHHHHH
Confidence            8899999999866  4555555544333

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=96.48  E-value=0.0091  Score=52.29  Aligned_cols=77  Identities=17%  Similarity=0.139  Sum_probs=61.5

Q ss_pred             HHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 029476           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYGCALIAGASSSFMINKLVTIIGHSILALILWIQSKK  162 (193)
Q Consensus        83 ~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~~~~~~  162 (193)
                      =+|.=-|+-+|.|.||+.||-|+++.+|+.....+...++...|....+.+...+.++.-..+.++.+   .++=.|.|.
T Consensus       243 eailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~~lplltip~a---fqiek~frn  319 (359)
T KOG4581|consen  243 EAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISFALPLLTIPMA---FQIEKQFRN  319 (359)
T ss_pred             HHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhchhH---HhHHHHhhh
Confidence            34445689999999999999999999999999999999999999999888888876655555556655   666555443

>PRK08238 hypothetical protein; Validated

Probab=95.99  E-value=0.055  Score=51.15  Aligned_cols=82  Identities=22%  Similarity=0.284  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 029476            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (193)
Q Consensus         5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~lg~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (193)
                      +.....+...+++..+||     +++||.++++..+++...+ -+..|.      ...+    .+.+.|++ .+..++..
T Consensus       295 ~~~~~~~~~~~~~~~~Ys-----~~lKr~~~~~~~~la~~~~lr~~~G~------~a~~----~~~s~wll-~~~~~~~l  358 (479)
T PRK08238        295 PAFLLVLLAYLALTLAYS-----LRLKRKVLVDVLTLAALYTLRIIAGA------AAIG----VALSFWLL-AFSMFFFL  358 (479)
T ss_pred             HHHHHHHHHHHHHHHHhh-----HHhcCCccccchHHHHHHHHHHHHHH------HHhc----cCHHHHHH-HHHHHHHH
Confidence            444555667788889999     8999999999988776555 222222      2222    23444443 34445688


Q ss_pred             HHHHHhcCCChhhhHhcCC
Q 029476           84 VNGLLKDLPDVEGDKKFGM  102 (193)
Q Consensus        84 ~i~i~kDi~DveGDr~~Gi  102 (193)
                      ..++.|...|++++++.|-
T Consensus       359 ~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        359 SLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHHhHHHHHHHHhcCC
Confidence            8899999999999999885

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=94.25  E-value=0.18  Score=44.97  Aligned_cols=37  Identities=22%  Similarity=0.489  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh
Q 029476            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG   46 (193)
Q Consensus         5 ~~l~~~~~~~l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~   46 (193)
                      |...+.....+++.++||     .++||.|++++++++...+
T Consensus       115 ~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~d~l~va~~~~  151 (295)
T PRK12324        115 PKLALVLLVYLVLNLAYS-----FKLKHQPVLDVFCIASGFV  151 (295)
T ss_pred             HHHHHHHHHHHHHHHHhh-----HHhcCCchhhHHHHHHHHH
Confidence            333444567788889999     8999999999998775555

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=93.56  E-value=0.43  Score=42.83  Aligned_cols=97  Identities=19%  Similarity=0.077  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 029476           79 SIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVN-TMLVGYGCALIAGASSSFMINKLVTIIGHSILALILW  157 (193)
Q Consensus        79 ~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~-ll~~~y~~~i~~~~~~~~~~~~~~~~~~h~~l~~~l~  157 (193)
                      ..|++.-..+-.=||-+-|-+-|+++-+.|+|++.=.+++.. ...++.+  ...|..+...|.- ..+  -...+..+-
T Consensus       234 v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~L--a~aG~~s~q~~py-y~~--lg~~~~~L~  308 (353)
T KOG1381|consen  234 VCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASL--AAAGIASDQTWPY-YAA--LGAVAARLG  308 (353)
T ss_pred             hhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHH--HHhhhccCCCchH-HHH--HHHHHHHHH
Confidence            346666667778899999999999999999999977777542 2222333  3445555555522 233  223356778


Q ss_pred             HHhhhccCCChhHH-HHHHHHHHH
Q 029476          158 IQSKKVDLDNFEST-FGFYMLIWK  180 (193)
Q Consensus       158 ~~~~~~d~~~~~a~-~~fY~fiW~  180 (193)
                      .|-..||++|+... +.|-..+|-
T Consensus       309 ~~i~~vdiDnp~dC~k~f~sN~nt  332 (353)
T KOG1381|consen  309 SQIYKVDIDNPSDCWKKFKSNSNT  332 (353)
T ss_pred             hheeeeecCChHHHHHHHHhcCcc
Confidence            88899999998865 344444443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=86.39  E-value=5.1  Score=34.91  Aligned_cols=33  Identities=21%  Similarity=0.084  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 029476           70 PLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGM  102 (193)
Q Consensus        70 ~~~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi  102 (193)
                      ......+.++....+..++||+.|.|=||+.--
T Consensus        48 ~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r   80 (289)
T COG0382          48 LLLLAFLAFFLARSAGYVINDLADREIDRINPR   80 (289)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence            344445555666777789999999999998765

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=86.35  E-value=8.1  Score=33.27  Aligned_cols=52  Identities=17%  Similarity=0.078  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhc---hhHHHHHHHHHHHHH
Q 029476           73 LMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLG---KEKVFPLCVNTMLVG  125 (193)
Q Consensus        73 ~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG---~~~~~~l~~~ll~~~  125 (193)
                      ...+...+...+..++||..|.|=|++. -+.=|..-|   ++.+..++..+..++
T Consensus        41 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~   95 (279)
T PRK12884         41 LGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILG   95 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3334445556666899999999999988 355666666   445555554444333

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=85.56  E-value=25  Score=31.27  Aligned_cols=49  Identities=10%  Similarity=0.024  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHhcCCChhhhHhcC---CcchhH-hhchhHHHHHHHHHHHH
Q 029476           76 AIMSIFAFVNGLLKDLPDVEGDKKFG---MNTLCV-LLGKEKVFPLCVNTMLV  124 (193)
Q Consensus        76 ~~~~l~~~~i~i~kDi~DveGDr~~G---i~Tl~v-~lG~~~~~~l~~~ll~~  124 (193)
                      +..++.+.+-.++||..|.|=||+..   -|-+|. ++.++.+..++..+..+
T Consensus        54 lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~  106 (306)
T PRK13362         54 IGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVA  106 (306)
T ss_pred             HHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            34445556678999999999998653   344443 34455555555444333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=85.45  E-value=13  Score=32.07  Aligned_cols=31  Identities=23%  Similarity=0.096  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 029476           72 ILMGAIMSIFAFVNGLLKDLPDVEGDKKFGM  102 (193)
Q Consensus        72 ~~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi  102 (193)
                      +......++...+...+||..|.|-|+...-
T Consensus        39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~   69 (285)
T PRK12872         39 WLLLLITFLIAAAVYIINYLTDLEEDIINKP   69 (285)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence            3444556667778899999999999987543

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=83.93  E-value=8.4  Score=34.13  Aligned_cols=54  Identities=13%  Similarity=0.062  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHhcCCChhhhHhcC-CcchhH-hhchhHHHHHHHHHHHHHHHHH
Q 029476           76 AIMSIFAFVNGLLKDLPDVEGDKKFG-MNTLCV-LLGKEKVFPLCVNTMLVGYGCA  129 (193)
Q Consensus        76 ~~~~l~~~~i~i~kDi~DveGDr~~G-i~Tl~v-~lG~~~~~~l~~~ll~~~y~~~  129 (193)
                      ....+...+..++||.-|.|-|++.+ -|.+|. ++.+|.+..++..+..++...+
T Consensus        61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg  116 (306)
T TIGR02056        61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIA  116 (306)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            34456666778999999999998766 233332 3456666666665555544433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=83.50  E-value=23  Score=32.01  Aligned_cols=84  Identities=23%  Similarity=0.206  Sum_probs=47.0

Q ss_pred             HHHHHHhcCCCCcchhhhhhhhhHHHHHHHhh-hhhh-hHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH------HHHH
Q 029476           15 FLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGL-PFYMHTQQYVLGRPFVITRPLILMGAIMSIFA------FVNG   86 (193)
Q Consensus        15 l~l~~~YS~~~PplRlKr~p~l~~l~I~~v~~-iv~l-g~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~i~   86 (193)
                      ++=..+||     .-+||+-. =|.+|-+..| .=++ |+.     ++-   .+.+.+-+.+.+.+++|.      .++.
T Consensus       133 ~~Yv~vYT-----~~lKR~T~-~NiviGg~aGa~PpliGwa-----Avt---g~~~~~a~~Lf~IiF~WtPpHfwALAl~  198 (304)
T COG0109         133 FFYVVVYT-----LWLKRRTP-QNIVIGGFAGAMPPLIGWA-----AVT---GSISLGAILLFAIIFLWTPPHFWALALK  198 (304)
T ss_pred             HHHhhhhh-----hhccCCcc-cceeeeeccccccccceee-----eee---CCCCchHHHHHHHHHHhccHHHHHHHHH
Confidence            34456788     78899876 3444444444 2222 221     111   223333444445555443      3333


Q ss_pred             HHhcCCChhhhHhcCCcchhHhhchhHHHHHH
Q 029476           87 LLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLC  118 (193)
Q Consensus        87 i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~  118 (193)
                      .-+|      =|+.||--+|++-|++++++-.
T Consensus       199 ~~~D------Y~~AgiPMlPvv~G~~~t~~~I  224 (304)
T COG0109         199 YKDD------YKAAGIPMLPVVKGERRTKRQI  224 (304)
T ss_pred             HHHH------HHHcCCCcccccccHHHHHHHH
Confidence            3322      3688999999999999988753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00