Citrus Sinensis ID: 029507

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDYGSLELCSVVSPQAL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEccEEEcccccEEEHEccccccEEEEEcccccHHHHHHHHHHHHHHHHccccEEccccccccccccccccccHHHHHHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHcccHHHHHccccccccc
Coil and Loop (DISEMBL)
marpqqryrgvrqrhwgswvSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLmcgprartnfpynpnashssssKLLSATLTAKLHRCYMASLqmtkssaanepqkapashvstpsgnaTRINEMGKHLlemrpmqvqgstepiNRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDYgslelcsvvspqal
Flexible Loop (DISEMBL)
marpqqryrgvrqrhwgswvseirhpLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKapashvstpsgnaTRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDYGSLELCSVVSPQAL
Low Complexity Region (SEG)
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETaedaaraydeaarLMCGPRARTNFPYNPNAshsssskllsatltaklhRCYMASLQMTKSSAANEPQKAPASHVSTPSGNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDYGSLELCSVVSPQAL
Disordered region (IsUnstruct)
*********GVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP***********************TLTAKLHRCYMA*************************************************************************DHIEQMIEELLDYGSLELCSV******
Disordered Region (DISOPRED)
******R****RQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP***************************************************************************************************EDDHIEQMIEELLDYGSLELCSV******
Disordered Region (DISEMBL)
**************HWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNP********KLLSATLTAKLHRCYMASLQM*********************GNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDYGSLELCSVVSPQAL
Disordered Region (DISPRO)
*****QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYN*********************************************************************************************FKPLEDDHIEQMIEELLDYGSLELCSVVSP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDYGSLELCSVVSPQAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q94AW5	181	Ethylene-responsive trans	yes	no	0.927	0.983	0.646	9e-63
P16146	164	Protein PPLZ02 OS=Lupinus	N/A	no	0.854	1.0	0.658	1e-50
Q3E958	189	Ethylene-responsive trans	no	no	0.828	0.841	0.436	6e-28
Q9XI33	199	Ethylene-responsive trans	no	no	0.359	0.346	0.739	5e-26
Q9LM15	261	Ethylene-responsive trans	no	no	0.427	0.314	0.541	1e-19
Q8H1E4	334	Ethylene-responsive trans	no	no	0.598	0.344	0.441	4e-19
Q9SVQ0	388	Ethylene-responsive trans	no	no	0.432	0.213	0.526	1e-18
Q9SKW5	314	Ethylene-responsive trans	no	no	0.447	0.273	0.516	2e-18
Q9FJQ2	277	Ethylene-responsive trans	no	no	0.546	0.379	0.435	2e-18
Q9LDE4	244	Ethylene-responsive trans	no	no	0.322	0.254	0.629	2e-18

>sp|Q94AW5|ERF03_ARATH Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1

 Score =  239 bits (610), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 126/195 (64%), Positives = 141/195 (72%), Gaps = 17/195 (8%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSG-- 118
           TNFPYNPNA  +SSSKLLSATLTAKLH+CYMASLQMTK +      +   S  +   G  
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSADSDGVT 120

Query: 119 -NATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLD 177
            N + +N              +G TE      +     + Q F+PLE+DHIEQMIEELL 
Sbjct: 121 ANESHLN--------------RGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLH 166

Query: 178 YGSLELCSVVSPQAL 192
           YGS+ELCSV+  Q L
Sbjct: 167 YGSIELCSVLPTQTL 181

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|P16146|PZ02_LUPPO Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1

 Score =  199 bits (506), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 127/170 (74%), Gaps = 6/170 (3%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG RAR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120
           TNFPYNPNAS SSSSKLLSATL AKLHRCYMASLQMT+ S+  E  +     +++P+   
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLIAKLHRCYMASLQMTRPSSLPEAPRI----IASPNNAV 116

Query: 121 TRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQ 170
             I      L + R  + Q +    N   KK +VE +QQFKPLE+DHI Q
Sbjct: 117 KGIGADAMLLPKKREQEEQETGG--NLDFKKVKVECSQQFKPLEEDHIAQ 164

Essential for all lupin cells independent of the respective tissue.

Lupinus polyphyllus (taxid: 3874)

>sp|Q3E958|SHN3_ARATH Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1

 Score =  123 bits (309), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 107/188 (56%), Gaps = 29/188 (15%)

Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66  -NPNASHS-------SSSKLLSATLTAKLHR-C-----YMASLQMTKSSAANEPQKAPAS 111
              N S+S        S K LS  L AKL + C     Y+  L++   S+     +  A 
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 112 HVSTPSGNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIE-Q 170
             ++P  N  ++ E+G   +  RP    G  E     V+ E V+        EDD +  Q
Sbjct: 125 SKTSP--NWVKLVELGDK-VNARP---GGDIETNKMKVRNEDVQ--------EDDQMAMQ 170

Query: 171 MIEELLDY 178
           MIEELL++
Sbjct: 171 MIEELLNW 178

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI33|WIN1_ARATH Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 59/69 (85%)

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
          +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5  KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66 NPNASHSSS 74
          N N +  +S
Sbjct: 65 NNNNTGETS 73

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Confers drought resistance. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM15|RA213_ARATH Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana GN=RAP2-13 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 3/85 (3%)

Query: 2   ARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRART 61
           A+P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD+AA  + G  AR 
Sbjct: 77  AKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL 136

Query: 62  NFPYNPNASHSSSSKLLSATLTAKL 86
           NF   P+  H+   + L +++ AKL
Sbjct: 137 NF---PDLRHNDEYQPLQSSVDAKL 158

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 5/120 (4%)

Query: 2   ARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRART 61
           ++P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD+AA  + G  AR 
Sbjct: 146 SKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL 205

Query: 62  NFP-YNPNASHSSSS----KLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTP 116
           NFP    N SH        K L +++ AKL     +  +  K   + +  K     VS+P
Sbjct: 206 NFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQKQDKSTKSSKKREKKVSSP 265

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVQ0|ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 61/95 (64%), Gaps = 12/95 (12%)

Query: 4   PQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNF 63
           P + YRGVRQRHWG WV+EIR P  +TR+WLGTFETAE AA AYD AA ++ G  A  NF
Sbjct: 228 PTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNF 287

Query: 64  PYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTK 98
              P+  H    +L S +L     RC +ASL  +K
Sbjct: 288 ---PDLKH----QLKSGSL-----RCMIASLLESK 310

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKW5|ERF55_ARATH Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 62/91 (68%), Gaps = 5/91 (5%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           +++P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD AA  + G  AR
Sbjct: 136 VSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSAR 195

Query: 61  TNFP---YNPNASHSSSSKL--LSATLTAKL 86
            NFP   Y   +S S + +   + A + AKL
Sbjct: 196 LNFPALRYQTGSSPSDTGEYGPIQAAVDAKL 226

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJQ2|ERF57_ARATH Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 3/108 (2%)

Query: 2   ARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRART 61
            +P + YRGVRQR WG WV+EIR P  +TR+WLGTFETA++AA AYD+AA  + G  AR 
Sbjct: 105 TKPVKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARL 164

Query: 62  NFPYNPNASHSSSSKLLSATLTAKLHR-CYMASLQMTKSSAANEPQKA 108
           NFP      H    ++LS ++ AK+   C  + L + +    N+ ++ 
Sbjct: 165 NFPDIVRQGH--YKQILSPSINAKIESICNSSDLPLPQIEKQNKTEEV 210

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDE4|ERF83_ARATH Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 51/62 (82%)

Query: 5  QQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP 64
          + RYRGVR+R WG + +EIR PL K+R+WLGTF++A DAARAYD AAR + GP+A+TNFP
Sbjct: 24 EPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83

Query: 65 YN 66
           +
Sbjct: 84 ID 85

Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
225430392	187	PREDICTED: ethylene-responsive transcrip	0.942	0.967	0.786	4e-71
224141937	194	AP2/ERF domain-containing transcription	0.979	0.969	0.724	6e-70
224089330	195	AP2/ERF domain-containing transcription	0.979	0.964	0.720	7e-70
292668919	179	AP2 domain class transcription factor [M	0.921	0.988	0.713	2e-69
356507410	193	PREDICTED: protein PPLZ02-like [Glycine	0.994	0.989	0.726	1e-67
255548796	203	Protein PPLZ02, putative [Ricinus commun	0.989	0.935	0.702	2e-66
356563916	202	PREDICTED: ethylene-responsive transcrip	0.989	0.940	0.686	5e-65
356515078	194	PREDICTED: protein PPLZ02-like [Glycine	0.994	0.984	0.717	7e-65
350539962	204	ethylene response factor 1 [Solanum lyco	0.968	0.911	0.643	4e-64
297812721	183	hypothetical protein ARALYDRAFT_489371 [	0.953	1.0	0.656	3e-62

>gi|225430392|ref|XP_002285373.1| PREDICTED: ethylene-responsive transcription factor ERF003 [Vitis vinifera]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 147/187 (78%), Positives = 159/187 (85%), Gaps = 6/187 (3%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120
           TNFPYNPNAS SSSSKLLSATLTAKLHRCYMASLQ+TK S  +EPQK P SHV+T +  A
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQLTKQS-LHEPQKPPTSHVATTTSIA 119

Query: 121 TRINEMGKHLLEMRPMQVQGSTEP-INRAVKKEQVEI-AQQFKPLEDDHIEQMIEELLDY 178
            ++ E G+   E RP+ VQ   +P  N  VKK QV+   QQFKPLEDDHI+QMIEELLDY
Sbjct: 120 GKVGESGQWSPEKRPVTVQ---QPEANWVVKKVQVDSNTQQFKPLEDDHIQQMIEELLDY 176

Query: 179 GSLELCS 185
           GS+ELCS
Sbjct: 177 GSIELCS 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141937|ref|XP_002324317.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222865751|gb|EEF02882.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 142/196 (72%), Positives = 156/196 (79%), Gaps = 8/196 (4%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSA----ANEPQKAPASHVSTP 116
           TNFPYNPNAS S+SSKLLSATLTAKLHRCYMASLQ+TK ++      + QKAP S V TP
Sbjct: 61  TNFPYNPNASQSASSKLLSATLTAKLHRCYMASLQVTKQTSLQEQKQQQQKAPTSLVKTP 120

Query: 117 SGN-ATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQF-KPLEDDHIEQMIEE 174
           + +   +  E+     E  P+QVQ +    N   KK QV+  QQF KPLED HIEQMIEE
Sbjct: 121 TNSIVIKSEELDALQPEKSPLQVQEAE--ANWVYKKVQVDNNQQFIKPLEDHHIEQMIEE 178

Query: 175 LLDYGSLELCSVVSPQ 190
           LLDYGS+ELCS V+ Q
Sbjct: 179 LLDYGSIELCSGVATQ 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089330|ref|XP_002308691.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|224089332|ref|XP_002308692.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222854667|gb|EEE92214.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222854668|gb|EEE92215.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 156/197 (79%), Gaps = 9/197 (4%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANE----PQKAPASHVSTP 116
           TNFPYNPNAS S+SSKLLSATLTAKLHRCYMASLQ+TK ++ +E     QKAP S  +TP
Sbjct: 61  TNFPYNPNASQSASSKLLSATLTAKLHRCYMASLQVTKKTSLHEQKQQQQKAPTSLANTP 120

Query: 117 S-GNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVE-IAQQF-KPLEDDHIEQMIE 173
           + G   +  E+   L E  P+QVQ +    N   KK QV+   QQF KPLED HIEQMIE
Sbjct: 121 TNGIVIKSEELDALLPEKSPLQVQEAE--ANWVYKKVQVDNNNQQFIKPLEDHHIEQMIE 178

Query: 174 ELLDYGSLELCSVVSPQ 190
           ELLDYGS+E  S V+ Q
Sbjct: 179 ELLDYGSIEFFSGVTTQ 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668919|gb|ADE41114.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 153/192 (79%), Gaps = 15/192 (7%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120
           TNFPYNPNAS SS+SKLLSATLTAKLHRCYMASLQMTK+S   EP+K  A          
Sbjct: 61  TNFPYNPNASQSSASKLLSATLTAKLHRCYMASLQMTKTS-LQEPKKPQA---------- 109

Query: 121 TRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVE-IAQQFKPLEDDHIEQMIEELLDYG 179
             +   G  + +++P ++       N  V++ +VE  +QQFKPLEDDHIEQMIEELL YG
Sbjct: 110 --LASSGAKMPDIKP-EIHQPVAEENWVVREVKVESSSQQFKPLEDDHIEQMIEELLHYG 166

Query: 180 SLELCSVVSPQA 191
           S+ELCSV+ PQA
Sbjct: 167 SIELCSVLPPQA 178

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507410|ref|XP_003522460.1| PREDICTED: protein PPLZ02-like [Glycine max]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/194 (72%), Positives = 157/194 (80%), Gaps = 3/194 (1%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MAR QQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAARLMCG RAR
Sbjct: 1   MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGN- 119
           TNFPYNPNAS SSSSKLLSATLTAKLHRCYMASLQMT+ S+  EPQ+  + +V T S + 
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSQAEPQRVASPNVITSSASN 120

Query: 120 -ATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDY 178
            + + NE    LL  +  + +   E  N   KK +VE AQQFKPLE+DHIEQMIEELL Y
Sbjct: 121 FSMKSNETETLLLPQKRQEEEQEAEG-NWVFKKVKVENAQQFKPLEEDHIEQMIEELLHY 179

Query: 179 GSLELCSVVSPQAL 192
           GS+ELCSV+ PQAL
Sbjct: 180 GSIELCSVIPPQAL 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548796|ref|XP_002515454.1| Protein PPLZ02, putative [Ricinus communis] gi|223545398|gb|EEF46903.1| Protein PPLZ02, putative [Ricinus communis]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 159/205 (77%), Gaps = 15/205 (7%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANE--PQKAPASHVST--- 115
           TNFP+NPNAS SSSSKLLSATLTAKLHRCYMASLQMTK ++ +E   QK P SH ++   
Sbjct: 61  TNFPFNPNASQSSSSKLLSATLTAKLHRCYMASLQMTKQTSLHEQQQQKPPTSHANSFIT 120

Query: 116 ------PSGNATRINEMGK-HLLEMRPMQVQGSTEPINRAVKKEQVEIAQQF-KPLEDDH 167
                  +G   +  E+G   L E  P+ VQ +    N  VKK QV+  QQF  PLED H
Sbjct: 121 TTTTTAANGIVIKSEELGTARLPEKDPLLVQDTEA--NWVVKKVQVDSTQQFITPLEDHH 178

Query: 168 IEQMIEELLDYGSLELCSVVSPQAL 192
           I+QMIEELLDYGSLELCS V+ Q+L
Sbjct: 179 IDQMIEELLDYGSLELCSTVTSQSL 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563916|ref|XP_003550203.1| PREDICTED: ethylene-responsive transcription factor ERF003-like [Glycine max]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 140/204 (68%), Positives = 156/204 (76%), Gaps = 14/204 (6%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAARLMCG RAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARAR 60

Query: 61  TNFPYNPNA--SHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPAS------H 112
           TNFP+NPN   S SSSSKLLSATLTAKLHRCYMASLQ+T+ + A+E Q+ P S       
Sbjct: 61  TNFPFNPNVSHSSSSSSKLLSATLTAKLHRCYMASLQVTRQALASESQRTPPSVQNATTS 120

Query: 113 VSTPSGNATRINEMGKH--LLEMRPMQVQGSTEPINRAVKKEQV--EIAQQFKPLEDDHI 168
            +TP  N   +     H  L   RP + Q S    NR VK+ +    +  QFKPLE+DHI
Sbjct: 121 TTTPISNNFSVKSEQTHAVLPHKRPEEEQESE--ANRGVKRVKAVENVPLQFKPLEEDHI 178

Query: 169 EQMIEELLDYGSLELCSVVSPQAL 192
           EQMIEELLDYGS+ELCSV+SPQAL
Sbjct: 179 EQMIEELLDYGSIELCSVISPQAL 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515078|ref|XP_003526228.1| PREDICTED: protein PPLZ02-like [Glycine max]

 Score =  251 bits (642), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 140/195 (71%), Positives = 153/195 (78%), Gaps = 4/195 (2%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MAR QQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAARLMCG RAR
Sbjct: 1   MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPAS---HVSTPS 117
           TNFPYNPNAS SSSSKLLSATLTAKLHRCYMASLQMT+ S+  E Q+  AS     S+ S
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSQPETQRVVASPNVITSSAS 120

Query: 118 GNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLD 177
             + + NE    LL  +  Q +      N   KK +VE AQQFKPLE+DHIEQMIEELL 
Sbjct: 121 NFSMKSNETETMLLPQK-RQEEEQEGEGNWVFKKVKVENAQQFKPLEEDHIEQMIEELLH 179

Query: 178 YGSLELCSVVSPQAL 192
           YGS+ELCSV+  QAL
Sbjct: 180 YGSIELCSVIPAQAL 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539962|ref|NP_001234848.1| ethylene response factor 1 [Solanum lycopersicum] gi|18650662|gb|AAL75809.1| ethylene response factor 1 [Solanum lycopersicum]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 130/202 (64%), Positives = 147/202 (72%), Gaps = 16/202 (7%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MAR QQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARAQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120
           TNFPYNPN   +SSSKLLS TLTAKLH+CYMASLQMTK+S   +     A++V     N+
Sbjct: 61  TNFPYNPNMPQTSSSKLLSTTLTAKLHKCYMASLQMTKTSPQGQKLAKNATNVQESVINS 120

Query: 121 TRINEMGKHLLEMRP------------MQVQGSTEPINRAVKKEQVEIAQQF-KPLEDDH 167
            +   M + +L  +P             +V      + R V+ + +E   QF KPLEDDH
Sbjct: 121 YK---MKQQMLVPKPSVLLTHHDHHEEAKVVNLGVGVIRKVEDQVLEGIPQFVKPLEDDH 177

Query: 168 IEQMIEELLDYGSLELCSVVSP 189
           IEQMIEELLDYGS+ELCS V P
Sbjct: 178 IEQMIEELLDYGSIELCSNVVP 199

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812721|ref|XP_002874244.1| hypothetical protein ARALYDRAFT_489371 [Arabidopsis lyrata subsp. lyrata] gi|297320081|gb|EFH50503.1| hypothetical protein ARALYDRAFT_489371 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 140/192 (72%), Gaps = 9/192 (4%)

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120
           TNFPYNPNA  +SSSKLLSATLTAKLH+CYMASLQMTK +      +   S      G  
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSPDTDGVT 120

Query: 121 TRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDYGS 180
              N+  + +         G TE      +   V + Q F+PLE+DHIEQMIEELL YGS
Sbjct: 121 ANGNQFNREV---------GVTETTEIKWEDGNVNMQQNFRPLEEDHIEQMIEELLHYGS 171

Query: 181 LELCSVVSPQAL 192
           +ELCSV+  Q L
Sbjct: 172 IELCSVLPTQTL 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2146985	181	ESE3 "ethylene and salt induci	0.942	1.0	0.536	2.1e-45
TAIR|locus:2037698	199	SHN1 "SHINE 1" [Arabidopsis th	0.328	0.316	0.619	1.7e-20
TAIR|locus:2145477	189	SHN3 "shine3" [Arabidopsis tha	0.822	0.835	0.354	1.4e-16
TAIR|locus:2148022	189	SHN2 "shine2" [Arabidopsis tha	0.307	0.312	0.610	2.9e-16
TAIR|locus:2015061	261	AT1G22190 [Arabidopsis thalian	0.328	0.241	0.507	2.7e-13
TAIR|locus:2034295	314	AT1G36060 [Arabidopsis thalian	0.333	0.203	0.484	6.3e-13
TAIR|locus:2119555	388	AT4G13620 [Arabidopsis thalian	0.520	0.257	0.369	9.5e-13
TAIR|locus:2057217	244	DREB19 "dehydration response e	0.317	0.25	0.449	1.3e-12
TAIR|locus:2029491	334	RAP2.4 "related to AP2 4" [Ara	0.328	0.188	0.492	1.7e-12
TAIR|locus:2135282	272	AT4G39780 [Arabidopsis thalian	0.312	0.220	0.516	2e-12

TAIR|locus:2146985 ESE3 "ethylene and salt inducible 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 103/192 (53%), Positives = 114/192 (59%)

Query:     1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRAR 60
             MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFET             LMCGPRAR
Sbjct:     1 MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query:    61 TNFPYNPNAXXXXXXXXXXXXXXXXXXRCYMASLQMTKSSAANEPQKAPASHVSTPSGNA 120
             TNFPYNPNA                  +CYMASLQMTK +   + Q   A   S  S   
Sbjct:    61 TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQT-QTQTQTARSQSADSDGV 119

Query:   121 TRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLDYGS 180
             T  NE   HL        +G TE      +     + Q F+PLE+DHIEQMIEELL YGS
Sbjct:   120 TA-NE--SHLN-------RGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGS 169

Query:   181 LELCSVVSPQAL 192
             +ELCSV+  Q L
Sbjct:   170 IELCSVLPTQTL 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2037698 SHN1 "SHINE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 39/63 (61%), Positives = 44/63 (69%)

Query:     6 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRARTNFPY 65
             +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFET             LM G  A+TNFP 
Sbjct:     5 KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query:    66 NPN 68
             N N
Sbjct:    65 NNN 67

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010166 "wax metabolic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2145477 SHN3 "shine3" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 67/189 (35%), Positives = 86/189 (45%)

Query:     6 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRARTNFPY 65
             +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+T             LM G  A+TNFP 
Sbjct:     5 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query:    66 ------NP---NAXXXXXXXXXXXXXXXXXXRC-----YMASLQMTK-SSAANEPQKAPA 110
                   N    N+                   C     Y+  L++   SS     QK   
Sbjct:    65 IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query:   111 SHVSTPSGNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIE- 169
             S  S P  N  ++ E+G  +   RP    G  E     V+ E V+        EDD +  
Sbjct:   125 SKTS-P--NWVKLVELGDKV-NARP---GGDIETNKMKVRNEDVQ--------EDDQMAM 169

Query:   170 QMIEELLDY 178
             QMIEELL++
Sbjct:   170 QMIEELLNW 178

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2148022 SHN2 "shine2" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 36/59 (61%), Positives = 41/59 (69%)

Query:     6 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRARTNFP 64
             +++RGVRQR WGSWVSEIRHPLLK R+WLGTFET             LM G  A+TNFP
Sbjct:     5 RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFP 63

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2015061 AT1G22190 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/63 (50%), Positives = 39/63 (61%)

Query:     2 ARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRART 61
             A+P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+T              + G  AR 
Sbjct:    77 AKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL 136

Query:    62 NFP 64
             NFP
Sbjct:   137 NFP 139

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2034295 AT1G36060 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 31/64 (48%), Positives = 40/64 (62%)

Query:     1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRAR 60
             +++P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+T              + G  AR
Sbjct:   136 VSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSAR 195

Query:    61 TNFP 64
              NFP
Sbjct:   196 LNFP 199

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2119555 AT4G13620 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 9.5e-13, P = 9.5e-13
 Identities = 44/119 (36%), Positives = 54/119 (45%)

Query:     4 PQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRARTNF 63
             P + YRGVRQRHWG WV+EIR P  +TR+WLGTFET             ++ G  A  NF
Sbjct:   228 PTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNF 287

Query:    64 PYNPNAXXXXXXXXXXXXXXXXXXRCYMASL------QMTKSSAANEPQKAPASHVSTP 116
             P                       RC +ASL      Q++ S  +N P   P   V TP
Sbjct:   288 P------------DLKHQLKSGSLRCMIASLLESKIQQISSSQVSNSPSPPPPK-VGTP 333

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2057217 DREB19 "dehydration response element-binding protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 31/69 (44%), Positives = 36/69 (52%)

Query:     4 PQQRYRGVRQRHWGSWVSEIRHPLL--------KTRIWLGTFETXXXXXXXXXXXXXLMC 55
             P  R+RGVRQR WG WV+EIR P+           R+WLGTF T             +M 
Sbjct:    66 PVCRFRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMY 125

Query:    56 GPRARTNFP 64
             GP AR NFP
Sbjct:   126 GPYARLNFP 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2029491 RAP2.4 "related to AP2 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 31/63 (49%), Positives = 39/63 (61%)

Query:     2 ARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRART 61
             ++P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+T              + G  AR 
Sbjct:   146 SKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL 205

Query:    62 NFP 64
             NFP
Sbjct:   206 NFP 208

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IGI

GO:0009611 "response to wounding" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2135282 AT4G39780 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 31/60 (51%), Positives = 37/60 (61%)

Query:     5 QQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETXXXXXXXXXXXXXLMCGPRARTNFP 64
             Q+ YRGVRQRHWG WV+EIR P  +TR+WLGTF+T              + G  AR NFP
Sbjct:    90 QKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P16146	PZ02_LUPPO	No assigned EC number	0.6588	0.8541	1.0	N/A	no
Q94AW5	ERF03_ARATH	No assigned EC number	0.6461	0.9270	0.9834	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032717001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (187 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-38
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-34
pfam00847	53	pfam00847, AP2, AP2 domain	2e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  125 bits (317), Expect = 3e-38
 Identities = 39/64 (60%), Positives = 45/64 (70%)

Query: 7  RYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYN 66
          +YRGVRQR WG WV+EIR P    R+WLGTF+TAE+AARAYD AA    G  AR NFP +
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 67 PNAS 70
             S
Sbjct: 61 LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  115 bits (289), Expect = 4e-34
 Identities = 38/61 (62%), Positives = 44/61 (72%)

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           +YRGVRQR WG WV+EIR P    RIWLGTF+TAE+AARAYD AA  + G  A  NFP 
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 66 N 66
          +
Sbjct: 61 S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 61.5 bits (150), Expect = 2e-13
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 7  RYRGVRQRH-WGSWVSEIRHP--LLKTRIWLGTFETAEDAARAYDEAARLMCG 56
           Y+GVR    WG WV+EIR P    K R  LGTF T E+AARA   A   + G
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.46
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.2

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=6.3e-22  Score=137.01  Aligned_cols=61  Identities=62%  Similarity=1.057  Sum_probs=58.3

Q ss_pred             CceeeeEeCCCCeEEEEEeeCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 029507            6 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYN   66 (192)
Q Consensus         6 S~YRGVr~r~~GKW~AeIr~~~~kkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~~NFP~s   66 (192)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.++++++|.++++|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899998888999999999998899999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=9.4e-21  Score=132.76  Aligned_cols=63  Identities=60%  Similarity=1.035  Sum_probs=58.9

Q ss_pred             ceeeeEeCCCCeEEEEEeeCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 029507            7 RYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNA   69 (192)
Q Consensus         7 ~YRGVr~r~~GKW~AeIr~~~~kkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~~NFP~s~~~   69 (192)
                      +|+||+++++|||+|+|+++..++.+|||+|+|+||||.|||.++++++|.++++|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599998888999999999977799999999999999999999999999999999999987654

>PHA00280 putative NHN endonuclease

Probab=99.46  E-value=1.6e-13  Score=108.70  Aligned_cols=55  Identities=16%  Similarity=0.237  Sum_probs=49.7

Q ss_pred             CCCCceeeeE-eCCCCeEEEEEeeCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 029507            3 RPQQRYRGVR-QRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR   60 (192)
Q Consensus         3 r~sS~YRGVr-~r~~GKW~AeIr~~~~kkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~   60 (192)
                      .++|||+||. ....|||+|+|++.  +|+++||.|+|+|+|+.||+ ++.++||+||+
T Consensus        64 ~N~SG~kGV~~~k~~~kw~A~I~~~--gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         64 SNTSGLKGLSWSKEREMWRGTVTAE--GKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCeeEEecCCCeEEEEEEEC--CEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            5689999995 55589999999998  99999999999999999997 77899999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.20  E-value=4.4e-11  Score=80.68  Aligned_cols=52  Identities=33%  Similarity=0.482  Sum_probs=44.7

Q ss_pred             CceeeeEe-CCCCeEEEEEeeCCC---CcEEeccCCCCHHHHHHHHHHHHHHhcCC
Q 029507            6 QRYRGVRQ-RHWGSWVSEIRHPLL---KTRIWLGTFETAEDAARAYDEAARLMCGP   57 (192)
Q Consensus         6 S~YRGVr~-r~~GKW~AeIr~~~~---kkri~LGtFdT~EEAA~AYD~AA~~~~G~   57 (192)
                      |+|+||++ +..++|+|+|++...   +++++||.|++++||+++|+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            78999965 458999999998321   49999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-08
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		5e-08

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 8  YRGVRQRHWGSWVSEIRHPLLK-TRIWLGTFETXXXXXXXXXXXXXLMCGPRARTNFPYN 66
          YRGVRQR WG + +EIR P     R+WLGTFET              M G RA  NFP  
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 65
Query: 67 PNA 69
           N+
Sbjct: 66 VNS 68

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 6  QRYRGVRQRHWGSWVSEIRHPLLK-TRIWLGTFETXXXXXXXXXXXXXLMCGPRARTNFP 64
          + YRGVRQR WG + +EIR P     R+WLGTFET              M G RA  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-34

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  115 bits (290), Expect = 2e-34
 Identities = 38/62 (61%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLK-TRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP 64
          + YRGVRQR WG + +EIR P     R+WLGTFETAEDAA AYD AA  M G RA  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 65 YN 66
            
Sbjct: 61 LR 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.7
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	84.79

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=1.9e-25  Score=156.87  Aligned_cols=61  Identities=62%  Similarity=1.012  Sum_probs=57.1

Q ss_pred             CceeeeEeCCCCeEEEEEeeCCC-CcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 029507            6 QRYRGVRQRHWGSWVSEIRHPLL-KTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYN   66 (192)
Q Consensus         6 S~YRGVr~r~~GKW~AeIr~~~~-kkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~~NFP~s   66 (192)
                      .+||||++++||||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            37999998889999999999864 68999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.70  E-value=0.063  Score=38.92  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             CCCCCceeee-EeCCCCeEEEEEeeC
Q 029507            2 ARPQQRYRGV-RQRHWGSWVSEIRHP   26 (192)
Q Consensus         2 ar~sS~YRGV-r~r~~GKW~AeIr~~   26 (192)
                      +..+|+|+|| |..+.+.|+|.-.++
T Consensus         2 ~~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            2 SHMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             --CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCCcEEeecCCceEEEEEecC
Confidence            3578999999 556689999999987

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=84.79  E-value=1  Score=37.11  Aligned_cols=42  Identities=14%  Similarity=0.025  Sum_probs=31.4

Q ss_pred             eeeEeCCCCeEEEEEeeCCCCcEEeccCCCCHHHHHHHHHHHHHHh
Q 029507            9 RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLM   54 (192)
Q Consensus         9 RGVr~r~~GKW~AeIr~~~~kkri~LGtFdT~EEAA~AYD~AA~~~   54 (192)
                      .||++++.|.|..+....  |+++.+|.  |..||..+..++...+
T Consensus        14 ~~v~~~~~g~~~~r~~~~--gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPRT--GKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTTT--CCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeecC--CeEEECCC--CHHHHHHHHHHHHHHH
Confidence            378777789998876544  78899996  8888887766655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-29

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  100 bits (251), Expect = 4e-29
 Identities = 38/60 (63%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLK-TRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP 64
          + YRGVRQR WG + +EIR P     R+WLGTFETAEDAA AYD AA  M G RA  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=3.3e-25  Score=154.58  Aligned_cols=60  Identities=63%  Similarity=1.016  Sum_probs=55.4

Q ss_pred             ceeeeEeCCCCeEEEEEeeCC-CCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 029507            7 RYRGVRQRHWGSWVSEIRHPL-LKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYN   66 (192)
Q Consensus         7 ~YRGVr~r~~GKW~AeIr~~~-~kkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~~NFP~s   66 (192)
                      .||||+++++|||+|+|+++. +++++|||+|+|+||||+|||.|+++++|+++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999888999999999864 458999999999999999999999999999999999963