Citrus Sinensis ID: 029660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNRLMSRTALRNK
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccccEEEEEEcccHHHHcEEEEEccccccEEEEccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccEEcccccccccccccccccccccEHHcccccc
Coil and Loop (DISEMBL)
msscgidvapeqlcyipcnfcnIVLAVSvpcsslldivtvrcghcsnLWSVNMAAAFQslswqdvhhhqapsyaspecridlgssskcnnkisamrtptnkateervvnrppekrqrvpsAYNQFIKEEIQRIkannpdishREAFSTAAknwahfphiHFGLmleannqpklddasgnrlMSRTALRNK
Flexible Loop (DISEMBL)
MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDlgssskcnnkisamrtptnkateervvnrppekrqrvpsaYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPklddasgnrlmsrtalrnk
Low Complexity Region (SEG)
MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNRLMSRTALRNK
Disordered region (IsUnstruct)
****GIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHH********************************************************FI*****************EAFSTAAKNWAHFPHIHFGLMLE************************
Disordered Region (DISOPRED)
***********QLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAF******************************************************************QFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP*********************************
Disordered Region (DISEMBL)
MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQ***********SPECRIDLGSSSKCNNKISAM***********************PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNRLMSRTALRNK
Disordered Region (DISPRO)
*********PEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL*********************************************RVVNRP***RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE****************S*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNRLMSRTALRNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q8GW46	164	Axial regulator YABBY 5 O	yes	no	0.831	0.963	0.759	1e-66
Q10FZ7	186	Protein YABBY 2 OS=Oryza	yes	no	0.894	0.913	0.561	5e-46
Q9XFB0	184	Putative axial regulator	no	no	0.889	0.918	0.537	1e-45
Q0JBF0	266	Protein YABBY 5 OS=Oryza	no	no	0.810	0.578	0.518	2e-42
Q01JG2	266	Protein YABBY 5 OS=Oryza	N/A	no	0.810	0.578	0.518	2e-42
Q2QM17	207	Protein YABBY 6 OS=Oryza	no	no	0.889	0.816	0.532	3e-42
Q6H668	256	Protein YABBY 4 OS=Oryza	no	no	0.810	0.601	0.481	2e-41
A2X7Q3	256	Protein YABBY 4 OS=Oryza	N/A	no	0.810	0.601	0.481	2e-41
O22152	229	Axial regulator YABBY 1 O	no	no	0.836	0.694	0.525	1e-39
Q7XIM7	169	Protein YABBY 1 OS=Oryza	no	no	0.815	0.917	0.481	1e-36

>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1

 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 139/166 (83%), Gaps = 8/166 (4%)

Query: 8   VAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH 67
           +A EQLCYIPCNFCNI+LAV+VPCSSL DIVTVRCGHC+NLWSVNMAAA QSLS  +   
Sbjct: 6   MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-- 63

Query: 68  HQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIK 127
            QA +YA PE     GSSS+ + KI + R  T   TE+R+VNRPPEKRQRVPSAYNQFIK
Sbjct: 64  -QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNRPPEKRQRVPSAYNQFIK 117

Query: 128 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKL 173
           EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+N Q K+
Sbjct: 118 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1

 Score =  183 bits (465), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 128/180 (71%), Gaps = 10/180 (5%)

Query: 3   SCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSW 62
           S  I  APE +CY+ CNFCN + AVSVP +S+L+IVTVRCGHC++L SVN+    Q+L  
Sbjct: 2   SAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPA 61

Query: 63  QDVHHHQ----APSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRV 118
           +D  H Q      + +  E   + GSSS+   ++  M +  +  TE  +  RPPEKRQRV
Sbjct: 62  ED--HLQDNLKMHNMSFRENYSEYGSSSRYG-RVPMMFSKND--TEHMLHVRPPEKRQRV 116

Query: 119 PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASG 178
           PSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHFGL    +++ KLD+A G
Sbjct: 117 PSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSK-KLDEAIG 175

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1

 Score =  182 bits (463), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 116/175 (66%), Gaps = 6/175 (3%)

Query: 6   IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
           +D + E++CY+ C+FC  +LAVSVP +SL  +VTVRCGHC+NL S+N+  +    S   +
Sbjct: 3   VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62

Query: 66  HHHQAPS---YASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAY 122
           H    P      S   R D  SSS+  N +S      ++        RPPEKRQRVPSAY
Sbjct: 63  HQDLQPHRQHTTSLVTRKDCASSSRSTNNLSEN---IDREAPRMPPIRPPEKRQRVPSAY 119

Query: 123 NQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDAS 177
           N+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGL L+ N + K  D S
Sbjct: 120 NRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQS 174

Involved in the abaxial cell fate determination during embryogenesis and organogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 115/191 (60%), Gaps = 37/191 (19%)

Query: 11  EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM--------AAAFQSLSW 62
           EQLCY+ CNFC+ +LAV VPCSSL   VTVRCGHC+NL SVN+        A+    L +
Sbjct: 29  EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88

Query: 63  --------------QDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNK 101
                          +V   QAP+      ASP       S+S C N   A  M +  NK
Sbjct: 89  GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148

Query: 102 ATEER--------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           AT+            NR  EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208

Query: 154 AHFPHIHFGLM 164
           AHFPHIHFGLM
Sbjct: 209 AHFPHIHFGLM 219

May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 115/191 (60%), Gaps = 37/191 (19%)

Query: 11  EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM--------AAAFQSLSW 62
           EQLCY+ CNFC+ +LAV VPCSSL   VTVRCGHC+NL SVN+        A+    L +
Sbjct: 29  EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88

Query: 63  --------------QDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNK 101
                          +V   QAP+      ASP       S+S C N   A  M +  NK
Sbjct: 89  GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148

Query: 102 ATEER--------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           AT+            NR  EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208

Query: 154 AHFPHIHFGLM 164
           AHFPHIHFGLM
Sbjct: 209 AHFPHIHFGLM 219

May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1

 Score =  171 bits (432), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 119/186 (63%), Gaps = 17/186 (9%)

Query: 7   DVAP-EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL-SWQD 64
            +AP EQ+CY+ CNFCN +LAVSVP +S+L+IVTVRCGHC+NL SVN+     S  + QD
Sbjct: 4   QIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD 63

Query: 65  VHHHQAPSYASPECRIDLGSSSKCN----NKISAMRTP-----------TNKATEERVVN 109
            HHH         C  D     +      +  S +R P            N+  E+ +  
Sbjct: 64  HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHA 123

Query: 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANN 169
           RPPEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHFGL      
Sbjct: 124 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEG 183

Query: 170 QPKLDD 175
             KL D
Sbjct: 184 GKKLVD 189

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/191 (48%), Positives = 110/191 (57%), Gaps = 37/191 (19%)

Query: 11  EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--H 68
           EQLCY+ CN C+ +LAV VPCSSL   VTVRCGHC+NL SVN+             +  H
Sbjct: 23  EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82

Query: 69  QAPS---------------YASPECRIDLGSSSK-----------CNNKISAMRTPTNKA 102
             PS               + +P   ++  +S+            C +   AM+ P  K 
Sbjct: 83  FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKP 142

Query: 103 TEER---------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
            ++            NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202

Query: 154 AHFPHIHFGLM 164
           AHFPHIHFGLM
Sbjct: 203 AHFPHIHFGLM 213

Seems to be associated with phloem cell differentiation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/191 (48%), Positives = 110/191 (57%), Gaps = 37/191 (19%)

Query: 11  EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--H 68
           EQLCY+ CN C+ +LAV VPCSSL   VTVRCGHC+NL SVN+             +  H
Sbjct: 23  EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82

Query: 69  QAPS---------------YASPECRIDLGSSSK-----------CNNKISAMRTPTNKA 102
             PS               + +P   ++  +S+            C +   AM+ P  K 
Sbjct: 83  FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKP 142

Query: 103 TEER---------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
            ++            NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202

Query: 154 AHFPHIHFGLM 164
           AHFPHIHFGLM
Sbjct: 203 AHFPHIHFGLM 213

Oryza sativa subsp. indica (taxid: 39946)

>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 112/175 (64%), Gaps = 16/175 (9%)

Query: 11  EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQA 70
           + LCY+ CNFC  +LAV+VP +SL   VTVRCG C+NL SVNM +     S Q       
Sbjct: 23  DHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGP 82

Query: 71  PSYASPECRID-LGSSSKCNNKISAMRTPT-------------NKATEERVVNRPPEKRQ 116
            SY +P+  ++ L  +    N +   + PT             ++  +   VNRPPEKRQ
Sbjct: 83  HSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQ 142

Query: 117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQP 171
           RVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL+   +NQP
Sbjct: 143 RVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLV--PDNQP 195

Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 3/158 (1%)

Query: 6   IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
           +    E +CY+ CN+CN +L V+VP +   +IVTVRCGHC+ + S+++A   Q+ + QD 
Sbjct: 3   VQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQD- 61

Query: 66  HHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQF 125
             HQ  +             +  N + S    P   + ++    RPPEKRQRVPSAYN+F
Sbjct: 62  --HQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRF 119

Query: 126 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163
           IKEEIQRIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 120 IKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157

May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
225445565	185	PREDICTED: axial regulator YABBY 5 [Viti	0.973	1.0	0.847	1e-87
351724725	186	uncharacterized protein LOC100499942 [Gl	0.978	1.0	0.836	8e-87
356548475	186	PREDICTED: axial regulator YABBY 5-like	0.978	1.0	0.831	2e-86
255638088	186	unknown [Glycine max]	0.978	1.0	0.826	8e-86
224087122	188	predicted protein [Populus trichocarpa]	0.973	0.984	0.837	2e-83
357478135	191	YABBY protein [Medicago truncatula] gi|3	0.984	0.979	0.793	2e-82
217073506	191	unknown [Medicago truncatula] gi|3884906	0.984	0.979	0.793	2e-82
255572533	185	Axial regulator YABBY5, putative [Ricinu	0.968	0.994	0.816	1e-80
302399149	188	YABBY domain class transcription factor	0.978	0.989	0.805	3e-78
449464626	193	PREDICTED: axial regulator YABBY 5-like	0.978	0.963	0.761	1e-77

>gi|225445565|ref|XP_002285328.1| PREDICTED: axial regulator YABBY 5 [Vitis vinifera] gi|297738980|emb|CBI28225.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/190 (84%), Positives = 170/190 (89%), Gaps = 5/190 (2%)

Query: 1   MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL 60
           MSSC IDVA EQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAFQSL
Sbjct: 1   MSSC-IDVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSL 59

Query: 61  SWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPS 120
           SWQDV   QAP+Y SP+ RIDLGSSSKCN K+ AMR P +  +EER+VNRPPEKRQRVPS
Sbjct: 60  SWQDV---QAPNYTSPDYRIDLGSSSKCNTKM-AMRAPASNISEERIVNRPPEKRQRVPS 115

Query: 121 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNR 180
           AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE NNQPKLD+ S   
Sbjct: 116 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQPKLDEGSEKH 175

Query: 181 LMSRTALRNK 190
           LMS+ ALRNK
Sbjct: 176 LMSKAALRNK 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724725|ref|NP_001238347.1| uncharacterized protein LOC100499942 [Glycine max] gi|255627893|gb|ACU14291.1| unknown [Glycine max]

 Score =  324 bits (831), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 159/190 (83%), Positives = 166/190 (87%), Gaps = 4/190 (2%)

Query: 1   MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL 60
           MSSC IDVAPEQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAFQSL
Sbjct: 1   MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSL 60

Query: 61  SWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPS 120
           SWQDV   Q P   +PE RID GS+SKCNN+I AMR PT   TEERVVNRPPEKRQRVPS
Sbjct: 61  SWQDV---QGPGQCNPEYRIDTGSTSKCNNRI-AMRAPTTHVTEERVVNRPPEKRQRVPS 116

Query: 121 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNR 180
           AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+NNQ K+D+ S   
Sbjct: 117 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMDNVSEKH 176

Query: 181 LMSRTALRNK 190
           LM R AL NK
Sbjct: 177 LMPRAALLNK 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548475|ref|XP_003542627.1| PREDICTED: axial regulator YABBY 5-like [Glycine max]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/190 (83%), Positives = 167/190 (87%), Gaps = 4/190 (2%)

Query: 1   MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL 60
           MSSC IDVAPEQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAFQSL
Sbjct: 1   MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSL 60

Query: 61  SWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPS 120
           SWQDV   Q   + +PE RID GS+SKCNN+I AMR PT   TEERVVNRPPEKRQRVPS
Sbjct: 61  SWQDV---QGSGHCNPEYRIDTGSTSKCNNRI-AMRAPTTHVTEERVVNRPPEKRQRVPS 116

Query: 121 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNR 180
           AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+NNQ K+++ S   
Sbjct: 117 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQVKMENVSEKH 176

Query: 181 LMSRTALRNK 190
           LMSR AL NK
Sbjct: 177 LMSRAALLNK 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638088|gb|ACU19358.1| unknown [Glycine max]

 Score =  321 bits (823), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 157/190 (82%), Positives = 166/190 (87%), Gaps = 4/190 (2%)

Query: 1   MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL 60
           MSSC IDVAPEQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAFQSL
Sbjct: 1   MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSL 60

Query: 61  SWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPS 120
           SWQDV   Q   + +PE RID GS+SKCNN+I AMR PT   TEERVVNRPPEKRQRVPS
Sbjct: 61  SWQDV---QGSGHCNPEYRIDTGSTSKCNNRI-AMRAPTTHVTEERVVNRPPEKRQRVPS 116

Query: 121 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNR 180
           AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+NNQ K+++     
Sbjct: 117 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQVKMENVFEKH 176

Query: 181 LMSRTALRNK 190
           LMSR AL NK
Sbjct: 177 LMSRAALLNK 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087122|ref|XP_002308074.1| predicted protein [Populus trichocarpa] gi|222854050|gb|EEE91597.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/191 (83%), Positives = 168/191 (87%), Gaps = 6/191 (3%)

Query: 1   MSSCGIDVAP-EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQS 59
           MSSC ID  P EQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+N+WSVNMAAAFQS
Sbjct: 1   MSSC-IDAVPNEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNIWSVNMAAAFQS 59

Query: 60  LSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPT-NKATEERVVNRPPEKRQRV 118
           LSWQD    QA +Y S + RIDLGSSSKCNNKIS MRTP  N  T+ERVVNRPPEKRQRV
Sbjct: 60  LSWQD--QVQASNYNSHDYRIDLGSSSKCNNKIS-MRTPAANIVTQERVVNRPPEKRQRV 116

Query: 119 PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASG 178
           PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE NNQ K+DD S 
Sbjct: 117 PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQTKVDDGSE 176

Query: 179 NRLMSRTALRN 189
            RLMSR+AL+N
Sbjct: 177 KRLMSRSALQN 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478135|ref|XP_003609353.1| YABBY protein [Medicago truncatula] gi|355510408|gb|AES91550.1| YABBY protein [Medicago truncatula]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/194 (79%), Positives = 167/194 (86%), Gaps = 7/194 (3%)

Query: 1   MSSCGIDVAP---EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAF 57
           MSSC IDVAP   EQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAF
Sbjct: 1   MSSCSIDVAPAAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAF 60

Query: 58  QSLSWQDVHHHQAPSY-ASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQ 116
           QSLSWQDV   QAPS+  +PE RI   S+ KCN++I+    PT   TEERVVNRPPEKRQ
Sbjct: 61  QSLSWQDV---QAPSHCMNPEYRIRTSSTPKCNDRIAMRSAPTTHVTEERVVNRPPEKRQ 117

Query: 117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDA 176
           RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+NNQ ++++ 
Sbjct: 118 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAQIENV 177

Query: 177 SGNRLMSRTALRNK 190
           S  RLMSR+AL NK
Sbjct: 178 SEKRLMSRSALMNK 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073506|gb|ACJ85113.1| unknown [Medicago truncatula] gi|388490620|gb|AFK33376.1| unknown [Medicago truncatula]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/194 (79%), Positives = 166/194 (85%), Gaps = 7/194 (3%)

Query: 1   MSSCGIDVAP---EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAF 57
           MSSC IDVAP   EQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAF
Sbjct: 1   MSSCSIDVAPAAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAF 60

Query: 58  QSLSWQDVHHHQAPSY-ASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQ 116
           QSLSWQDV   QAPS+  +PE RI   S+ KCN++I+    PT   TEERVVNRPPEKRQ
Sbjct: 61  QSLSWQDV---QAPSHCMNPEYRIRTSSTPKCNDRIAMRSAPTTHVTEERVVNRPPEKRQ 117

Query: 117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDA 176
           RVPSAYNQFIKEEIQRIK NNPDISHREAFSTAAKNWAHFPHIHFGLMLE+NNQ K+++ 
Sbjct: 118 RVPSAYNQFIKEEIQRIKVNNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKIENV 177

Query: 177 SGNRLMSRTALRNK 190
           S  RLMSR+AL NK
Sbjct: 178 SEKRLMSRSALMNK 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572533|ref|XP_002527201.1| Axial regulator YABBY5, putative [Ricinus communis] gi|223533466|gb|EEF35214.1| Axial regulator YABBY5, putative [Ricinus communis]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/191 (81%), Positives = 166/191 (86%), Gaps = 7/191 (3%)

Query: 1   MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL 60
           MSSC +DV PEQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAFQSL
Sbjct: 1   MSSC-VDVVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSL 59

Query: 61  SWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPT-NKATEERVVNRPPEKRQRVP 119
           SWQD    QAPS+ SP+ RI+LGSSSKCNN+IS MR P  +   EERVVNRPPEKRQRVP
Sbjct: 60  SWQDF---QAPSHNSPDYRIELGSSSKCNNRIS-MRAPAPHNIAEERVVNRPPEKRQRVP 115

Query: 120 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGN 179
           SAYNQFIKEEIQRIKANNP+ISHREAFSTAAKNWAH+PHIHFGL L  N+Q KLDDAS  
Sbjct: 116 SAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPHIHFGLTLN-NHQTKLDDASEK 174

Query: 180 RLMSRTALRNK 190
            LMSR AL NK
Sbjct: 175 HLMSRAALYNK 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399149|gb|ADL36869.1| YABBY domain class transcription factor [Malus x domestica]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/190 (80%), Positives = 161/190 (84%), Gaps = 4/190 (2%)

Query: 1   MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL 60
           M+SC +DVA EQLCYIPCNFC+IVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAFQS 
Sbjct: 1   MTSC-VDVATEQLCYIPCNFCSIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSP 59

Query: 61  SWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPT-NKATEERVVNRPPEKRQRVP 119
           SWQDV   Q  +Y S   RIDLGSSSKCN K +A R PT +  TEER VNRPPEKRQRVP
Sbjct: 60  SWQDVQA-QNYNYNSQNYRIDLGSSSKCNKK-NATRDPTSDHVTEERGVNRPPEKRQRVP 117

Query: 120 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGN 179
           SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQ KLD+    
Sbjct: 118 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQAKLDNDPEK 177

Query: 180 RLMSRTALRN 189
            LMSR AL N
Sbjct: 178 HLMSRAALLN 187

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464626|ref|XP_004150030.1| PREDICTED: axial regulator YABBY 5-like [Cucumis sativus]

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/197 (76%), Positives = 160/197 (81%), Gaps = 11/197 (5%)

Query: 1   MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL 60
           M++  +D+APEQLCYIPCNFCNIVLAVSVPCSSL DIVTVRCGHC+NLWSVNMAAAF SL
Sbjct: 1   MATTCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFHSL 60

Query: 61  SWQDVHHHQAPSYASPEC-----RIDLGSSSKCNNKISAM--RTPTNKATEERVVNRPPE 113
           SWQDV   Q PSY    C     + D GSSSKCNN ++ M  R PT    EERVVNRPPE
Sbjct: 61  SWQDV---QVPSYNLYGCNGADFQGDFGSSSKCNNNVNKMEIRVPTTIPAEERVVNRPPE 117

Query: 114 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKL 173
           KRQRVPSAYNQFIKEEIQRIKA+NP+ISHREAFSTAAKNWAHFP IHFGLMLE NNQ KL
Sbjct: 118 KRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKL 177

Query: 174 DDASGNRLMSRTALRNK 190
           DD S  RLM R AL NK
Sbjct: 178 DDGS-ERLMPRAALLNK 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2066311	164	YAB5 "YABBY5" [Arabidopsis tha	0.831	0.963	0.759	6.9e-63
TAIR|locus:2826731	184	YAB2 "YABBY2" [Arabidopsis tha	0.889	0.918	0.542	5e-44
TAIR|locus:2005492	229	AFO "AT2G45190" [Arabidopsis t	0.868	0.720	0.518	9.9e-39
UNIPROTKB|Q7XIM7	169	YAB1 "Protein YABBY 1" [Oryza	0.810	0.911	0.490	4.4e-36
TAIR|locus:2028020	231	INO "INNER NO OUTER" [Arabidop	0.794	0.653	0.472	1.6e-31
UNIPROTKB|Q76EJ0	194	DL "Protein DROOPING LEAF" [Or	0.710	0.695	0.490	1.3e-29
TAIR|locus:2026418	181	CRC "AT1G69180" [Arabidopsis t	0.726	0.762	0.438	2.8e-27
TAIR|locus:2126931	240	YAB3 "YABBY3" [Arabidopsis tha	0.805	0.637	0.425	3.2e-26

TAIR|locus:2066311 YAB5 "YABBY5" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 126/166 (75%), Positives = 139/166 (83%)

Query:     8 VAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH 67
             +A EQLCYIPCNFCNI+LAV+VPCSSL DIVTVRCGHC+NLWSVNMAAA QSLS  +   
Sbjct:     6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-- 63

Query:    68 HQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIK 127
              QA +YA PE     GSSS+ + KI + R  T   TE+R+VNRPPEKRQRVPSAYNQFIK
Sbjct:    64 -QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNRPPEKRQRVPSAYNQFIK 117

Query:   128 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKL 173
             EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+N Q K+
Sbjct:   118 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2826731 YAB2 "YABBY2" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 95/175 (54%), Positives = 117/175 (66%)

Query:     6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
             +D + E++CY+ C+FC  +LAVSVP +SL  +VTVRCGHC+NL S+N+  +    S   +
Sbjct:     3 VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62

Query:    66 HHHQAPSY---ASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAY 122
             H    P      S   R D  SSS+  N +S       +A     + RPPEKRQRVPSAY
Sbjct:    63 HQDLQPHRQHTTSLVTRKDCASSSRSTNNLS--ENIDREAPRMPPI-RPPEKRQRVPSAY 119

Query:   123 NQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDAS 177
             N+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGL L+ N + K  D S
Sbjct:   120 NRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQS 174

GO:0005634 "nucleus" evidence=ISM

GO:0010158 "abaxial cell fate specification" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2005492 AFO "AT2G45190" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 96/185 (51%), Positives = 117/185 (63%)

Query:     4 CGID-VAP-EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLS 61
             C  D  +P + LCY+ CNFC  +LAV+VP +SL   VTVRCG C+NL SVNM +     S
Sbjct:    14 CSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPAS 73

Query:    62 WQDVHHHQAP-SYASPECRIDLGSSSKCNNKISAMRT-PT-------------NKATEER 106
              Q +     P SY +P+  ++    +  N  +  M   PT             ++  +  
Sbjct:    74 NQ-LQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAP 132

Query:   107 VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE 166
              VNRPPEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL+  
Sbjct:   133 PVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLV-- 190

Query:   167 ANNQP 171
              +NQP
Sbjct:   191 PDNQP 195

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010154 "fruit development" evidence=IMP

GO:0010158 "abaxial cell fate specification" evidence=IGI

GO:0010159 "specification of organ position" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0010450 "inflorescence meristem growth" evidence=IMP

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0045165 "cell fate commitment" evidence=IMP

UNIPROTKB|Q7XIM7 YAB1 "Protein YABBY 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 78/159 (49%), Positives = 103/159 (64%)

Query:     6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
             +    E +CY+ CN+CN +L V+VP +   +IVTVRCGHC+ + S+++A   Q+ + QD 
Sbjct:     3 VQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQD- 61

Query:    66 HHHQAPSYASPEC-RIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQ 124
             H  Q   +        D+ S    N + S    P   + ++    RPPEKRQRVPSAYN+
Sbjct:    62 HQVQNRGFQGNNFGSYDIASR---NQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNR 118

Query:   125 FIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163
             FIKEEIQRIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct:   119 FIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157

GO:0005634 "nucleus" evidence=IDA

GO:0048833 "specification of floral organ number" evidence=IMP

TAIR|locus:2028020 INO "INNER NO OUTER" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 77/163 (47%), Positives = 102/163 (62%)

Query:    10 PEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVN-MAAAF------QSLSW 62
             P Q+C++ C FC  +L VSVP +SL  +VTVRCGHC++L SVN M A+F       SLS 
Sbjct:    18 PGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSH 77

Query:    63 QD-VHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEE----RVVNRPPEKRQR 117
              D     +  +    E      +  K N+  + + +  N+  +     +VVN+PPEKRQR
Sbjct:    78 LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQR 137

Query:   118 VPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 160
              PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP  H
Sbjct:   138 APSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IDA

GO:0048481 "ovule development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

UNIPROTKB|Q76EJ0 DL "Protein DROOPING LEAF" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 75/153 (49%), Positives = 95/153 (62%)

Query:     8 VAP-EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAF-QSLSWQDV 65
             V+P E LCY+ C +CN VLAV VPC  L+D VTV+CGHC+NL  ++      Q LS  D 
Sbjct:     4 VSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTD- 62

Query:    66 HHHQAPSYASP--ECRIDLGSSSKCNNKISAMRTPTNKATEERV--VNRPPEKRQRVPSA 121
              H   P +  P  +CR          N+   + +PT+     R   V +PPEK+ R+PSA
Sbjct:    63 -HPLGP-FQGPCTDCR---------RNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSA 111

Query:   122 YNQFIKEEIQRIKANNPDISHREAFSTAAKNWA 154
             YN+F++EEIQRIKA  PDI HREAFS AAKNWA
Sbjct:   112 YNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144

GO:0010022 "meristem determinacy" evidence=IGI;IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048440 "carpel development" evidence=IMP

TAIR|locus:2026418 CRC "AT1G69180" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 64/146 (43%), Positives = 90/146 (61%)

Query:    11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQA 70
             E L Y+ C+ CN +LAV +P   +LD VTV+CGHC NL  +      Q      +   Q 
Sbjct:    19 EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTL---QM 75

Query:    71 PSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEI 130
              S+   + +   GSSS  ++  S+ + P+        V +PPEK+QR+PSAYN+F+++EI
Sbjct:    76 QSFGGSDYK--KGSSSSSSSSTSSDQPPSPSPP---FVVKPPEKKQRLPSAYNRFMRDEI 130

Query:   131 QRIKANNPDISHREAFSTAAKNWAHF 156
             QRIK+ NP+I HREAFS AAKNWA +
Sbjct:   131 QRIKSANPEIPHREAFSAAAKNWAKY 156

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0010254 "nectary development" evidence=IMP

GO:0048440 "carpel development" evidence=RCA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=TAS

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0048479 "style development" evidence=IMP

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2126931 YAB3 "YABBY3" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 74/174 (42%), Positives = 95/174 (54%)

Query:     6 IDVAPEQL---CYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHC----------SNLWSVN 52
             + V P  L     + C  C+ +L+V+V   +LL       GH            NL    
Sbjct:    39 VSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLE-E 97

Query:    53 MAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPP 112
             M +  Q+++   +  H A ++   E  +    + +  + +  M  P          NRPP
Sbjct:    98 MRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPP-------ANRPP 150

Query:   113 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE 166
             EKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM +
Sbjct:   151 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMAD 204

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010154 "fruit development" evidence=IMP

GO:0010158 "abaxial cell fate specification" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GW46	YAB5_ARATH	No assigned EC number	0.7590	0.8315	0.9634	yes	no
Q10FZ7	YAB2_ORYSJ	No assigned EC number	0.5611	0.8947	0.9139	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam04690	170	pfam04690, YABBY, YABBY protein	7e-64
cd01390	66	cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class	5e-04
cd00084	66	cd00084, HMG-box, High Mobility Group (HMG)-box is	0.001

>gnl|CDD|113458 pfam04690, YABBY, YABBY protein

 Score =  194 bits (494), Expect = 7e-64
 Identities = 88/172 (51%), Positives = 107/172 (62%), Gaps = 18/172 (10%)

Query: 6   IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
           +  + E +CY+ CNFC  +LAVSVP +SL +IVTVRCGHC+NL SVN+      L     
Sbjct: 3   VFFSSEHVCYVHCNFCTTILAVSVPYTSLFNIVTVRCGHCTNLLSVNLMMRSHLLPALSH 62

Query: 66  HHHQAPSYASPECRIDLGSS--------SKCNNKISAMRTPTNKATEERV------VNRP 111
                     PE   +LG           K ++  +++ +      ++        VNRP
Sbjct: 63  LDETG----KPELLQNLGVHGQNFNSNMMKSHSASTSVSSYMMSDNQDEEMPRVPPVNRP 118

Query: 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163
           PEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL
Sbjct: 119 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 170

YABBY proteins are a group of plant-specific transcription involved in the specification of abaxial polarity in lateral organs. Length = 170

>gnl|CDD|238686 cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           R  SAY  F +E+  ++K  NPD S  E      + W
Sbjct: 3   RPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKW 39

These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions. Length = 66

>gnl|CDD|238037 cd00084, HMG-box, High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           R  SAY  F +E    +KA NP +S  E      + W
Sbjct: 3   RPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMW 39

HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PF04690	170	YABBY: YABBY protein; InterPro: IPR006780 YABBY pr	100.0
PF09011	73	HMG_box_2: HMG-box domain; InterPro: IPR015101 Thi	98.18
cd01390	66	HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and II	97.66
cd01388	72	SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of	97.58
PF00505	69	HMG_box: HMG (high mobility group) box; InterPro:	97.55
cd00084	66	HMG-box High Mobility Group (HMG)-box is found in	97.54
smart00398	70	HMG high mobility group.	97.45
cd01389	77	MATA_HMG-box MATA_HMG-box, class I member of the H	97.35
PTZ00199	94	high mobility group protein; Provisional	97.33
KOG0381	96	consensus HMG box-containing protein [General func	96.16
PF06244	122	DUF1014: Protein of unknown function (DUF1014); In	95.77
PF11331	46	DUF3133: Protein of unknown function (DUF3133); In	93.6
KOG3223	221	consensus Uncharacterized conserved protein [Funct	93.01
KOG4684	275	consensus Uncharacterized conserved protein, conta	83.6
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	82.07
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	80.42

>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ]

Probab=100.00  E-value=8.1e-81  Score=514.13  Aligned_cols=157  Identities=62%  Similarity=0.978  Sum_probs=119.1

Q ss_pred             CCCCCceeeeeCCCcceeeEecccCCCccceeeeecCCCCCcccccccccccCCCccccc-cc-CCC---CC--CCCccc
Q 029660            7 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVH-HH-QAP---SY--ASPECR   79 (190)
Q Consensus         7 ~~~~E~lCYV~CnfCnTiLaVsVPcssL~~~VTVRCGHCtnLlSVNmr~llqs~~~q~~~-~~-~~~---~~--~~~~~~   79 (190)
                      +.++|||||||||||||||||||||+|||+|||||||||+|||||||++++++++.+++. .. ..+   ..  ..+...
T Consensus         4 ~~~sE~lCYVhCnFC~TiLaVsVP~ssL~~~VTVRCGHCtNLLSVNm~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   83 (170)
T PF04690_consen    4 FSPSEQLCYVHCNFCNTILAVSVPCSSLLKTVTVRCGHCTNLLSVNMRALLQPLPSQDHLQHSLLPPQSQELQFQPENFG   83 (170)
T ss_pred             cCCCCcEEEEEcCCcCeEEEEecchhhhhhhhceeccCccceeeeeccccccCCCcccchhccccccccccccccccccc
Confidence            336899999999999999999999999999999999999999999999999988766641 11 000   00  011111


Q ss_pred             ccCCCC-Ccccccc-cccCCCCCCccCCC-CCCCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 029660           80 IDLGSS-SKCNNKI-SAMRTPTNKATEER-VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF  156 (190)
Q Consensus        80 ~~~~ss-s~~~~~~-~~~~~~~~~e~~~~-~v~kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~  156 (190)
                      ....++ +.++... ..+....+++.|++ +++||||||||+|||||+||||||||||++||||+|||||++|||||||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~pr~~~v~kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~  163 (170)
T PF04690_consen   84 SNSSSSSSSSSSSSSSSMSFSEEEEIPRAPPVNKPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHF  163 (170)
T ss_pred             cccccCCCccccccccccCccccccccccccccCCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhC
Confidence            111111 1110110 01112334456665 47999999999999999999999999999999999999999999999999


Q ss_pred             Ccccccc
Q 029660          157 PHIHFGL  163 (190)
Q Consensus       157 phihfGl  163 (190)
                      |||||||
T Consensus       164 phihfgl  170 (170)
T PF04690_consen  164 PHIHFGL  170 (170)
T ss_pred             cccccCC
Confidence            9999997

>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins

Probab=98.18  E-value=2.7e-06  Score=59.85  Aligned_cols=46  Identities=35%  Similarity=0.634  Sum_probs=38.6

Q ss_pred             CCCCCCCchhhhHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhccCC
Q 029660          112 PEKRQRVPSAYNQFIKEEIQRIKAN-NPDISHREAFSTAAKNWAHFP  157 (190)
Q Consensus       112 PEKRQRvpsayN~fmK~ei~riK~~-~P~i~HkEaFs~aAknW~~~p  157 (190)
                      |.|-.|.+|||+.||++.+.+++.. .+.+.++|++..++..|+..+
T Consensus         1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls   47 (73)
T PF09011_consen    1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLS   47 (73)
T ss_dssp             SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcC
Confidence            6677899999999999999999999 889999999999999999754

It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....

>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins

Probab=97.66  E-value=9.9e-05  Score=49.40  Aligned_cols=41  Identities=32%  Similarity=0.498  Sum_probs=38.6

Q ss_pred             CCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029660          117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP  157 (190)
Q Consensus       117 RvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~p  157 (190)
                      |-+|||..|+++....+++.+|+++..|....++..|+..+
T Consensus         3 rp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls   43 (66)
T cd01390           3 RPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELS   43 (66)
T ss_pred             CCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence            56899999999999999999999999999999999999754

These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.

>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins

Probab=97.58  E-value=0.00014  Score=51.01  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=38.5

Q ss_pred             CCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029660          117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP  157 (190)
Q Consensus       117 RvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~p  157 (190)
                      |-++||..|+++.-.+++++||+++..|.-+.++..|+..+
T Consensus         4 rP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls   44 (72)
T cd01388           4 RPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALS   44 (72)
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999999999999999754

These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.

>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin

Probab=97.55  E-value=0.00014  Score=49.20  Aligned_cols=42  Identities=33%  Similarity=0.635  Sum_probs=37.3

Q ss_pred             CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029660          116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP  157 (190)
Q Consensus       116 QRvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~p  157 (190)
                      .|-++||..|+++....||+++|+++..|.-+.+++.|+..+
T Consensus         2 krP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~   43 (69)
T PF00505_consen    2 KRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLS   43 (69)
T ss_dssp             SSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCC
Confidence            467899999999999999999999999999999999999753

HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....

>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors

Probab=97.54  E-value=0.0002  Score=47.30  Aligned_cols=42  Identities=31%  Similarity=0.439  Sum_probs=39.0

Q ss_pred             CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029660          116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP  157 (190)
Q Consensus       116 QRvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~p  157 (190)
                      .|-++||..|++++...+++.+|+++..|....+++.|+..+
T Consensus         2 krp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~   43 (66)
T cd00084           2 KRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLS   43 (66)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence            356899999999999999999999999999999999999754

HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member

>smart00398 HMG high mobility group

Probab=97.45  E-value=0.00035  Score=46.67  Aligned_cols=42  Identities=33%  Similarity=0.530  Sum_probs=39.0

Q ss_pred             CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029660          116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP  157 (190)
Q Consensus       116 QRvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~p  157 (190)
                      .|-+|+|..|+++....+++.+|+++..|..+.++..|+..+
T Consensus         3 krp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~   44 (70)
T smart00398        3 KRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLS   44 (70)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999999999754

>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins

Probab=97.35  E-value=0.00049  Score=48.71  Aligned_cols=43  Identities=16%  Similarity=0.358  Sum_probs=40.0

Q ss_pred             CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029660          116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       116 QRvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      .|-++||-.|+++....|+++||++++.|.-+.++..|+..+.
T Consensus         3 kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~   45 (77)
T cd01389           3 PRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESP   45 (77)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCH
Confidence            4789999999999999999999999999999999999998653

These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.

>PTZ00199 high mobility group protein; Provisional

Probab=97.33  E-value=0.00058  Score=50.95  Aligned_cols=49  Identities=27%  Similarity=0.457  Sum_probs=42.3

Q ss_pred             CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCC
Q 029660          109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDIS--HREAFSTAAKNWAHFP  157 (190)
Q Consensus       109 ~kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~--HkEaFs~aAknW~~~p  157 (190)
                      .+.|.+-.|-+|||..|+++.-..|+++||+++  -.|.-+.++..|+..+
T Consensus        17 ~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls   67 (94)
T PTZ00199         17 KKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLS   67 (94)
T ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCC
Confidence            356667778999999999999999999999986  5677888999999865

>KOG0381 consensus HMG box-containing protein [General function prediction only]

Probab=96.16  E-value=0.012  Score=42.49  Aligned_cols=45  Identities=29%  Similarity=0.448  Sum_probs=40.2

Q ss_pred             CCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029660          113 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP  157 (190)
Q Consensus       113 EKRQRvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~p  157 (190)
                      ..-+|-+|||..|+.+.-.+||++||+++..|.=+.+..+|....
T Consensus        21 ~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~   65 (96)
T KOG0381|consen   21 QAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLA   65 (96)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Confidence            355677889999999999999999999999999999999998754

>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function

Probab=95.77  E-value=0.016  Score=46.49  Aligned_cols=53  Identities=26%  Similarity=0.518  Sum_probs=46.6

Q ss_pred             CCCCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCcccc
Q 029660          107 VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF  161 (190)
Q Consensus       107 ~v~kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~phihf  161 (190)
                      .+-|.||||-  --||..|--.+|.+||++||++.+-+-=-..=|.|...|.=.|
T Consensus        67 ~~drHPErR~--KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPeNP~  119 (122)
T PF06244_consen   67 PIDRHPERRM--KAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPENPF  119 (122)
T ss_pred             CCCCCcchhH--HHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCCCCc
Confidence            5668999986  4699999999999999999999999988888999999986444

>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function

Probab=93.60  E-value=0.038  Score=37.93  Aligned_cols=38  Identities=29%  Similarity=0.697  Sum_probs=29.3

Q ss_pred             eeeCCCcceeeEecccCCCccc---eeeeecCCCCCccccccc
Q 029660           15 YIPCNFCNIVLAVSVPCSSLLD---IVTVRCGHCSNLWSVNMA   54 (190)
Q Consensus        15 YV~CnfCnTiLaVsVPcssL~~---~VTVRCGHCtnLlSVNmr   54 (190)
                      ||-|..|..+|-  +|-+.++.   .-.+|||.|+.++++.++
T Consensus         6 Fv~C~~C~~lLq--lP~~~~~~~k~~~klrCGaCs~vl~~s~~   46 (46)
T PF11331_consen    6 FVVCSSCFELLQ--LPAKFSLSKKNQQKLRCGACSEVLSFSLP   46 (46)
T ss_pred             EeECccHHHHHc--CCCccCCCccceeEEeCCCCceeEEEecC
Confidence            788999977665  47775443   568999999999988653

>KOG3223 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.01  E-value=0.046  Score=47.83  Aligned_cols=52  Identities=31%  Similarity=0.580  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCccccc
Q 029660          109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFG  162 (190)
Q Consensus       109 ~kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~phihfG  162 (190)
                      -|-||||-|  -||--|=..+|.|||.+||+++|-+-=-..-|.|...|.=.|.
T Consensus       161 drHPEkRmr--AA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPDNP~N  212 (221)
T KOG3223|consen  161 DRHPEKRMR--AAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPDNPFN  212 (221)
T ss_pred             ccChHHHHH--HHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCCChhh
Confidence            489999877  4999999999999999999999998877888999999987765

>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]

Probab=83.60  E-value=1.1  Score=40.20  Aligned_cols=17  Identities=35%  Similarity=0.841  Sum_probs=12.6

Q ss_pred             ceeeeecCCCCCccccc
Q 029660           36 DIVTVRCGHCSNLWSVN   52 (190)
Q Consensus        36 ~~VTVRCGHCtnLlSVN   52 (190)
                      ..+-|+||||++..--|
T Consensus       167 ~gcRV~CgHC~~tFLfn  183 (275)
T KOG4684|consen  167 TGCRVKCGHCNETFLFN  183 (275)
T ss_pred             cceEEEecCccceeehh
Confidence            34889999999875433

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=82.07  E-value=1.5  Score=27.29  Aligned_cols=34  Identities=35%  Similarity=0.721  Sum_probs=24.1

Q ss_pred             eeCCCcceeeEecccCCCcc-ceeeeecCCCCCcccc
Q 029660           16 IPCNFCNIVLAVSVPCSSLL-DIVTVRCGHCSNLWSV   51 (190)
Q Consensus        16 V~CnfCnTiLaVsVPcssL~-~~VTVRCGHCtnLlSV   51 (190)
                      +.|..|.+..-|..  +.+- +...|+|++|.+.+.+
T Consensus         3 ~~CP~C~~~~~v~~--~~~~~~~~~v~C~~C~~~~~~   37 (38)
T TIGR02098         3 IQCPNCKTSFRVVD--SQLGANGGKVRCGKCGHVWYA   37 (38)
T ss_pred             EECCCCCCEEEeCH--HHcCCCCCEEECCCCCCEEEe
Confidence            68999999877653  2221 3347999999987754

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=80.42  E-value=1.4  Score=28.14  Aligned_cols=34  Identities=32%  Similarity=0.665  Sum_probs=25.4

Q ss_pred             eeCCCcceeeEecccCCCc-cceeeeecCCCCCcccc
Q 029660           16 IPCNFCNIVLAVSVPCSSL-LDIVTVRCGHCSNLWSV   51 (190)
Q Consensus        16 V~CnfCnTiLaVsVPcssL-~~~VTVRCGHCtnLlSV   51 (190)
                      ++|.-|.|.+.|  |-+.| -....|||++|.+...|
T Consensus         3 i~CP~C~~~f~v--~~~~l~~~~~~vrC~~C~~~f~v   37 (37)
T PF13719_consen    3 ITCPNCQTRFRV--PDDKLPAGGRKVRCPKCGHVFRV   37 (37)
T ss_pred             EECCCCCceEEc--CHHHcccCCcEEECCCCCcEeeC
Confidence            689999998865  44444 34679999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
3tmm_A	238	Transcription factor A, mitochondrial; HMG, high m	2e-06
3tq6_A	214	Transcription factor A, mitochondrial; transcripti	3e-05
2yrq_A	173	High mobility group protein B1; HMG box domain, DN	1e-04
1cg7_A	93	Protein (NON histone protein 6 A); HMG BOX, DNA be	2e-04
1k99_A	99	Upstream binding factor 1; alpha-helix, L-shape, D	3e-04
2co9_A	102	Thymus high mobility group box protein TOX; TOX pr	8e-04

>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} Length = 238

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 16/74 (21%), Positives = 25/74 (33%)

Query: 84  SSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR 143
           SS               +       +      ++  S+Y +F KE++   KA NPD    
Sbjct: 11  SSGLVPRGSHMASMTGGQQMGRGSSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTT 70

Query: 144 EAFSTAAKNWAHFP 157
           E     A+ W   P
Sbjct: 71  ELIRRIAQRWRELP 84

>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens} Length = 214

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
                 ++  S+Y +F KE++   KA NPD    E     A+ W   P
Sbjct: 5   VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52

>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 173

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 95  MRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           M+T      E +   + P   +R PSA+  F  E   +IK  +P +S  +      + W
Sbjct: 82  MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 140

>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A Length = 93

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/59 (25%), Positives = 23/59 (38%)

Query: 95  MRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           M TP           + P   +R  SAY  F  E    +++ NPDI+  +      + W
Sbjct: 1   MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKW 59

>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 Length = 99

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 7/45 (15%), Positives = 22/45 (48%)

Query: 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
            + P+  ++  + Y +F  E+  +    +P++S+ +     +K +
Sbjct: 5   KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 49

>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus} Length = 102

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 99  TNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           ++ ++ ++   + P + Q+  SAY  F ++    IK  NP+ +  E     A  W
Sbjct: 2   SSGSSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMW 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1k99a_	91	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	2e-04
d1lwma_	93	a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces	2e-04
d1hsma_	79	a.21.1.1 (A:) High mobility group protein 1, HMG1	0.002
d1qrva_	73	a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxI	0.003

>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 8/48 (16%), Positives = 23/48 (47%)

Query: 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
           + P+  ++  + Y +F  E+  +    +P++S+ +     +K +   P
Sbjct: 6   KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELP 53

>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: NHP6a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 15/59 (25%), Positives = 23/59 (38%)

Query: 95  MRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           M TP           + P   +R  SAY  F  E    +++ NPDI+  +      + W
Sbjct: 1   MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKW 59

>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]} Length = 79

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: High mobility group protein 1, HMG1
species: Hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
           N P    +R PSA+  F  E   +IK  +P +S  +      + W +  
Sbjct: 1   NAP----KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 45

>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]} Length = 73

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: HMG-D
species: Drosophila melanogaster [TaxId: 7227]

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
           ++P     R  SAY  ++    + IK  NP I   E      + W
Sbjct: 2   DKPK----RPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELW 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1wgfa_	90	Nucleolar transcription factor 1 (Upstream binding	97.23
d1k99a_	91	Nucleolar transcription factor 1 (Upstream binding	97.14
d1lwma_	93	NHP6a {Baker's yeast (Saccharomyces cerevisiae) [T	97.02
d1hsma_	79	High mobility group protein 1, HMG1 {Hamster (Cric	96.62
d1qrva_	73	HMG-D {Drosophila melanogaster [TaxId: 7227]}	96.44
d1j46a_	85	SRY {Human (Homo sapiens) [TaxId: 9606]}	96.28
d1ckta_	71	High mobility group protein 1, HMG1 {Rat (Rattus n	96.25
d1gt0d_	80	Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}	96.23
d2lefa_	86	Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus	95.62
d1i11a_	70	Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}	95.43
d1v64a_	108	Nucleolar transcription factor 1 (Upstream binding	94.41
d1v63a_	101	Nucleolar transcription factor 1 (Upstream binding	92.32

>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00046  Score=42.96  Aligned_cols=49  Identities=24%  Similarity=0.382  Sum_probs=43.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             9999789996143499999999988509999878899999972035974
Q 029660          110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       110 kPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      +.|.+..|-+|||..|+++..++|++++|++++.|.-..++..|+..+.
T Consensus        16 ~~~~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~W~~Ls~   64 (90)
T d1wgfa_          16 GGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSE   64 (90)
T ss_dssp             SCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
T ss_conf             9989899997699999999999999858898789999999999984999

>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00035  Score=43.71  Aligned_cols=50  Identities=16%  Similarity=0.372  Sum_probs=45.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             99999789996143499999999988509999878899999972035974
Q 029660          109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       109 ~kPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      .|.|++..|-+|||..|+++....|++.+|+++..|.-+.++..|+..+.
T Consensus         5 kk~p~~PKrP~say~lf~~~~r~~~~~~~p~~~~~ev~k~l~~~W~~ls~   54 (91)
T d1k99a_           5 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPE   54 (91)
T ss_dssp             CSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH
T ss_conf             79979899998699999999999999887899999999999817167999

>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: NHP6a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00064  Score=42.08  Aligned_cols=51  Identities=24%  Similarity=0.445  Sum_probs=45.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             999999789996143499999999988509999878899999972035974
Q 029660          108 VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       108 v~kPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      ..|.|.+..|-+|||..|+++....||+++|++++.|.-+.++..|+..+.
T Consensus        14 ~~k~p~~PKrP~saf~lF~~e~r~~ik~~~p~~~~~ei~k~l~~~W~~ls~   64 (93)
T d1lwma_          14 KKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTP   64 (93)
T ss_dssp             CCCCSSCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTSCH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
T ss_conf             879968899998799999999999998758898689999999999983999

>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: High mobility group protein 1, HMG1
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.62  E-value=0.00095  Score=41.02  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             9996143499999999988509999878899999972035974
Q 029660          116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       116 QRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      .|-+|||..|+++....|++++|+++..|..+.++..|+..+.
T Consensus         4 KrP~say~~f~~~~r~~i~~~~p~~~~~ei~k~~~~~W~~ls~   46 (79)
T d1hsma_           4 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA   46 (79)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHCTTCCTTTHHHHHHHHHHTSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
T ss_conf             8998699999999999999888899899999999518754999

>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: HMG-D
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.44  E-value=0.0025  Score=38.47  Aligned_cols=40  Identities=28%  Similarity=0.429  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf             9996143499999999988509999878899999972035
Q 029660          116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAH  155 (190)
Q Consensus       116 QRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~  155 (190)
                      .|-+|||..|+++.-+.|++++|+++..|.-+.++..|+.
T Consensus         5 KrP~say~lf~~~~r~~~k~~~p~~~~~eisk~l~~~Wk~   44 (73)
T d1qrva_           5 KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRA   44 (73)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             8998599999999999999886899999999999998648

>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: SRY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0042  Score=37.09  Aligned_cols=45  Identities=13%  Similarity=0.347  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             789996143499999999988509999878899999972035974
Q 029660          114 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       114 KRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      |--|-+|||..|+++.-..|++++|+++..|.=+.++..|+..+.
T Consensus         4 ~iKRP~nay~lF~~~~r~~i~~~~p~~~~~eisk~ig~~W~~L~~   48 (85)
T d1j46a_           4 RVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE   48 (85)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf             898999799999999999999986068899999999799963999

>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: High mobility group protein 1, HMG1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.0041  Score=37.12  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCC
Q ss_conf             8999614349999999998850999--9878899999972035974
Q 029660          115 RQRVPSAYNQFIKEEIQRIKANNPD--ISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       115 RQRvpSaYN~fmK~ei~riK~~~P~--i~HkEaFs~aAknW~~~ph  158 (190)
                      ..|-+|||..|+++.-..|++.+|+  +.+.|.-+.++..|+..+.
T Consensus         2 PKrP~say~~f~~~~r~~~k~~~p~~~~~~~ei~k~~~~~Wk~ls~   47 (71)
T d1ckta_           2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA   47 (71)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf             4899979999999999999988878777799999999998868999

>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Sox-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0045  Score=36.91  Aligned_cols=46  Identities=13%  Similarity=0.361  Sum_probs=41.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             9789996143499999999988509999878899999972035974
Q 029660          113 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       113 EKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      +|--|-+|||-.|+++.-.+|++++|++++.|-=+.++..|+..+.
T Consensus         1 ~kiKRP~nAy~lF~~~~r~~~~~~~p~~~~~eisk~~g~~W~~l~~   46 (80)
T d1gt0d_           1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE   46 (80)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH
T ss_conf             9799998699999999999999886798899999999999874879

>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Lymphoid enhancer-binding factor, LEF1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0099  Score=34.79  Aligned_cols=42  Identities=12%  Similarity=0.207  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             996143499999999988509999878899999972035974
Q 029660          117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       117 RvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      |-+|||-.|+++.-++|++++|+++..|.=+.++..|+..+.
T Consensus         5 RP~naf~lF~~~~r~~~~~~~P~~~~~~Isk~lg~~Wk~ls~   46 (86)
T d2lefa_           5 KPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSR   46 (86)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
T ss_conf             999799999999999999888899889999999999981999

>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Sox-5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.012  Score=34.20  Aligned_cols=42  Identities=19%  Similarity=0.363  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             996143499999999988509999878899999972035974
Q 029660          117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       117 RvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      |-+|||-.|+++.-++|+.++|+++..|.-+.++..|+..+.
T Consensus         5 RP~nay~lf~~~~r~~i~~~~p~~~~~eisk~lg~~Wk~ls~   46 (70)
T d1i11a_           5 RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTN   46 (70)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH
T ss_conf             999899999999999999986068789999999889874899

>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.41  E-value=0.027  Score=32.16  Aligned_cols=38  Identities=16%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             996143499999999988509999878899999972035974
Q 029660          117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       117 RvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      |-+|||..|+++..+.    .|+++.+|.++.++..|+..+.
T Consensus        20 ~P~~ay~lF~~~~r~~----~~~~~~~e~~k~ig~~W~~Ls~   57 (108)
T d1v64a_          20 PPPNSYSLYCAELMAN----MKDVPSTERMVLCSQQWKLLSQ   57 (108)
T ss_dssp             CCSSHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHSCH
T ss_pred             CCCCHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHCCCCH
T ss_conf             9996899999999988----3278899999999998844999

>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.32  E-value=0.081  Score=29.21  Aligned_cols=40  Identities=15%  Similarity=0.312  Sum_probs=34.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             996143499999999988509999878899999972035974
Q 029660          117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH  158 (190)
Q Consensus       117 RvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ph  158 (190)
                      |-++||..|+++.++.++..++  +.+|.-+.++..|+..+.
T Consensus        11 rP~~ay~~F~~e~r~~~~~~~~--~~~ei~k~~g~~Wk~ls~   50 (101)
T d1v63a_          11 PPMNGYQKFSQELLSNGELNHL--PLKERMVEIGSRWQRISQ   50 (101)
T ss_dssp             CCSSSHHHHHHHHHHHCTTTTS--CHHHHHHHHHHHHTTSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCH
T ss_conf             9998999999999999770698--999999999999861999