Citrus Sinensis ID: 029666

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNR
cccccccccccccccccccccccccccccEEEccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEEEEcccccEEEcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccc
ccccccccccccccccccEEEccccccccEEEccccHHHHEEEccccccEEEccccHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccc
matavvaqsqdpsqphydvklfnrwtfedvqvndislsdyigvqaakhatyvphtagrysvkrfrkaqcPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVinsgpredatrigsagvvrrqavdisplrrvNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNR
matavvaqsqdpsqphydVKLFNRWTFEDVQVNDISLSDYIGVQAAKHAtyvphtagrysvkrfrkaQCPIVerltnslmmhgrnNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRedatrigsagvvrrqavdisplrrvnQAIYLITTGARESAFRNIKTIAECLADElinaakgssnr
MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNR
****************YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELIN********
************SQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELIN*AK*****
*************QPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNR
*******QS*****PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAK*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query190 2.2.26 [Sep-21-2011]
P51427207 40S ribosomal protein S5- yes no 0.994 0.913 0.857 1e-92
O65731197 40S ribosomal protein S5 N/A no 0.931 0.898 0.893 2e-92
Q9ZUT9207 40S ribosomal protein S5- no no 0.994 0.913 0.835 2e-91
P46782204 40S ribosomal protein S5 yes no 0.952 0.887 0.754 6e-81
Q5E988204 40S ribosomal protein S5 yes no 0.952 0.887 0.754 6e-81
P97461204 40S ribosomal protein S5 yes no 0.9 0.838 0.790 3e-80
Q7RVI1213 40S ribosomal protein S5 N/A no 0.884 0.788 0.771 9e-79
P24050204 40S ribosomal protein S5 yes no 0.952 0.887 0.737 1e-78
Q24186228 40S ribosomal protein S5a yes no 0.963 0.802 0.730 2e-78
Q9VFE4230 40S ribosomal protein S5b no no 0.9 0.743 0.75 5e-76
>sp|P51427|RS52_ARATH 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2 Back     alignment and function desciption
 Score =  338 bits (868), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 162/189 (85%), Positives = 174/189 (92%)

Query: 1   MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYS 60
           MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYS
Sbjct: 1   MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVI 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LITTGARE+AFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSN 189
           INAAKGSSN
Sbjct: 181 INAAKGSSN 189

Arabidopsis thaliana (taxid: 3702)
>sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1 Back     alignment and function description
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4 Back     alignment and function description
>sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3 Back     alignment and function description
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3 Back     alignment and function description
>sp|Q7RVI1|RS5_NEUCR 40S ribosomal protein S5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rps-5 PE=3 SV=2 Back     alignment and function description
>sp|P24050|RS5_RAT 40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=1 SV=3 Back     alignment and function description
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=2 SV=1 Back     alignment and function description
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
313586551209 40S ribosomal protein S5A [Hevea brasili 0.994 0.904 0.910 7e-98
313586553209 40S ribosomal protein S5B [Hevea brasili 0.942 0.856 0.949 2e-97
255581578211 40S ribosomal protein S5, putative [Rici 0.952 0.857 0.939 3e-97
255587562209 40S ribosomal protein S5, putative [Rici 0.994 0.904 0.905 7e-97
449443474207 PREDICTED: 40S ribosomal protein S5-1-li 0.994 0.913 0.894 7e-96
449445316207 PREDICTED: 40S ribosomal protein S5-1-li 0.994 0.913 0.888 2e-95
449444098207 PREDICTED: 40S ribosomal protein S5-1-li 0.994 0.913 0.878 7e-95
224091519208 predicted protein [Populus trichocarpa] 0.989 0.903 0.874 2e-93
116784084198 unknown [Picea sitchensis] gi|116786244| 0.921 0.883 0.925 3e-93
356500397204 PREDICTED: 40S ribosomal protein S5-like 0.931 0.867 0.916 8e-93
>gi|313586551|gb|ADR71286.1| 40S ribosomal protein S5A [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  361 bits (927), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 174/191 (91%), Positives = 183/191 (95%), Gaps = 2/191 (1%)

Query: 1   MATAVVAQ--SQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGR 58
           MA A+ A   + +P+QP+ +VKLFNRWTFE+VQVNDISLSDYIGVQ AKHATYVPHTAGR
Sbjct: 1   MAAALAATPVTGEPTQPYNEVKLFNRWTFEEVQVNDISLSDYIGVQPAKHATYVPHTAGR 60

Query: 59  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA 118
           YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA
Sbjct: 61  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA 120

Query: 119 VINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLAD 178
           VINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYL+TTGARE+AFRNIKTIAECLAD
Sbjct: 121 VINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 180

Query: 179 ELINAAKGSSN 189
           ELINAAKGSSN
Sbjct: 181 ELINAAKGSSN 191

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|313586553|gb|ADR71287.1| 40S ribosomal protein S5B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255581578|ref|XP_002531594.1| 40S ribosomal protein S5, putative [Ricinus communis] gi|223528790|gb|EEF30797.1| 40S ribosomal protein S5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255587562|ref|XP_002534312.1| 40S ribosomal protein S5, putative [Ricinus communis] gi|223525513|gb|EEF28068.1| 40S ribosomal protein S5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449443474|ref|XP_004139502.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 1 [Cucumis sativus] gi|449443476|ref|XP_004139503.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445316|ref|XP_004140419.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 1 [Cucumis sativus] gi|449445318|ref|XP_004140420.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 2 [Cucumis sativus] gi|449445320|ref|XP_004140421.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 3 [Cucumis sativus] gi|449445322|ref|XP_004140422.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 4 [Cucumis sativus] gi|449528012|ref|XP_004171001.1| PREDICTED: 40S ribosomal protein S5-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444098|ref|XP_004139812.1| PREDICTED: 40S ribosomal protein S5-1-like [Cucumis sativus] gi|449492606|ref|XP_004159046.1| PREDICTED: 40S ribosomal protein S5-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224091519|ref|XP_002309278.1| predicted protein [Populus trichocarpa] gi|222855254|gb|EEE92801.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|116784084|gb|ABK23207.1| unknown [Picea sitchensis] gi|116786244|gb|ABK24039.1| unknown [Picea sitchensis] gi|116793442|gb|ABK26748.1| unknown [Picea sitchensis] gi|224285738|gb|ACN40584.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|356500397|ref|XP_003519018.1| PREDICTED: 40S ribosomal protein S5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
TAIR|locus:2081546207 RPS5A "ribosomal protein 5A" [ 0.994 0.913 0.857 5.8e-82
TAIR|locus:2049862207 RPS5B "ribosomal protein 5B" [ 0.994 0.913 0.835 1.1e-80
UNIPROTKB|Q5E988204 RPS5 "40S ribosomal protein S5 0.952 0.887 0.754 8.6e-72
UNIPROTKB|E2RIQ8204 RPS5 "Uncharacterized protein" 0.952 0.887 0.754 8.6e-72
UNIPROTKB|P46782204 RPS5 "40S ribosomal protein S5 0.952 0.887 0.754 8.6e-72
UNIPROTKB|F2Z5E6204 RPS5 "Uncharacterized protein" 0.952 0.887 0.754 8.6e-72
ZFIN|ZDB-GENE-060825-73201 zgc:153322 "zgc:153322" [Danio 0.957 0.905 0.758 2.3e-71
MGI|MGI:1097682204 Rps5 "ribosomal protein S5" [M 0.9 0.838 0.790 3.7e-71
RGD|3601204 Rps5 "ribosomal protein S5" [R 0.952 0.887 0.737 5.5e-70
ZFIN|ZDB-GENE-020419-12204 rps5 "ribosomal protein S5" [D 0.9 0.838 0.761 1.4e-69
TAIR|locus:2081546 RPS5A "ribosomal protein 5A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 162/189 (85%), Positives = 174/189 (92%)

Query:     1 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYS 60
             MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYS
Sbjct:     1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60

Query:    61 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVI 120
             VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++
Sbjct:    61 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query:   121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADEL 180
             NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LITTGARE+AFRNIKTIAECLADEL
Sbjct:   121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 180

Query:   181 INAAKGSSN 189
             INAAKGSSN
Sbjct:   181 INAAKGSSN 189
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0015935 "small ribosomal subunit" evidence=IEA
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2049862 RPS5B "ribosomal protein 5B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E988 RPS5 "40S ribosomal protein S5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIQ8 RPS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P46782 RPS5 "40S ribosomal protein S5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5E6 RPS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060825-73 zgc:153322 "zgc:153322" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1097682 Rps5 "ribosomal protein S5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3601 Rps5 "ribosomal protein S5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-12 rps5 "ribosomal protein S5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4FWF1RS7_METM5No assigned EC number0.49700.86840.8776yesno
Q54MA6RS5_DICDINo assigned EC number0.68020.88940.8894yesno
Q9YAU8RS7_AERPENo assigned EC number0.51190.86310.8yesno
B1YC67RS7_PYRNVNo assigned EC number0.50600.84210.7142yesno
P35026RS7_SULSONo assigned EC number0.49700.87360.8601yesno
P46782RS5_HUMANNo assigned EC number0.75400.95260.8872yesno
O65731RS5_CICARNo assigned EC number0.89380.93150.8984N/Ano
P26783RS5_YEASTNo assigned EC number0.67550.95780.8088yesno
P14037RS7_METVSNo assigned EC number0.44700.87360.8556yesno
Q6LXI3RS7_METMPNo assigned EC number0.50880.86840.8776yesno
P49041RS5_CAEELNo assigned EC number0.73590.93150.8428yesno
Q8PUR6RS7_METMANo assigned EC number0.41210.84730.8518yesno
A1RSA1RS7_PYRILNo assigned EC number0.52400.85260.7232yesno
Q8TXJ3RS7_METKANo assigned EC number0.49700.86840.8375yesno
Q8SS72RS5_ENCCUNo assigned EC number0.47090.88940.8125yesno
Q9P3T6RS5B_SCHPONo assigned EC number0.73090.88420.8275yesno
Q08364RS5_PODCANo assigned EC number0.73830.90.8142N/Ano
A6VGV4RS7_METM7No assigned EC number0.49110.86840.8776yesno
A0B563RS7_METTPNo assigned EC number0.40360.85260.8756yesno
Q24186RS5A_DROMENo assigned EC number0.73010.96310.8026yesno
P97461RS5_MOUSENo assigned EC number0.79060.90.8382yesno
A7I4X5RS7_METB6No assigned EC number0.40740.96840.9019yesno
Q464Z2RS7_METBFNo assigned EC number0.40960.85260.8756yesno
Q8TRC2RS7_METACNo assigned EC number0.41210.84730.8518yesno
Q5E988RS5_BOVINNo assigned EC number0.75400.95260.8872yesno
A0RUR1RS7_CENSYNo assigned EC number0.43820.86310.8241yesno
Q9ZUT9RS51_ARATHNo assigned EC number0.83590.99470.9130nono
P24050RS5_RATNo assigned EC number0.73790.95260.8872yesno
O93631RS7_METBUNo assigned EC number0.41210.84730.8655yesno
O27130RS7_METTHNo assigned EC number0.45450.84730.8655yesno
Q7RVI1RS5_NEUCRNo assigned EC number0.77190.88420.7887N/Ano
A9A9U5RS7_METM6No assigned EC number0.49110.86840.8776yesno
O14277RS5A_SCHPONo assigned EC number0.73090.88420.8275yesno
O28386RS7_ARCFUNo assigned EC number0.45830.86310.8453yesno
A6UV45RS7_META3No assigned EC number0.43930.88940.8989yesno
Q2NEK9RS7_METSTNo assigned EC number0.46150.86840.8823yesno
P51427RS52_ARATHNo assigned EC number0.85710.99470.9130yesno
O24111RS5_NICPLNo assigned EC number0.96320.71570.8831N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
PTZ00091193 PTZ00091, PTZ00091, 40S ribosomal protein S5; Prov 1e-112
TIGR01028186 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaea 8e-94
PRK04027195 PRK04027, PRK04027, 30S ribosomal protein S7P; Rev 3e-76
COG0049148 COG0049, RpsG, Ribosomal protein S7 [Translation, 1e-49
pfam00177149 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e 3e-41
CHL00053155 CHL00053, rps7, ribosomal protein S7 5e-12
PRK05302156 PRK05302, PRK05302, 30S ribosomal protein S7; Vali 1e-11
TIGR01029154 TIGR01029, rpsG_bact, ribosomal protein S7, bacter 1e-10
>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional Back     alignment and domain information 
 Score =  318 bits (816), Expect = e-112
 Identities = 133/172 (77%), Positives = 152/172 (88%), Gaps = 1/172 (0%)

Query: 18  DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
           + KLF +W+++DVQV+D+SL DYI V   K + +VPHTAGRY  KRFRKAQCPIVERL N
Sbjct: 5   EPKLFGKWSYDDVQVSDLSLKDYIAVTT-KASVFVPHTAGRYQKKRFRKAQCPIVERLVN 63

Query: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 137
           SLM HGRNNGKKL+AVRIVKHA EIIHLLTD+NP+QV+VDAV N GPRED+TR+GS GVV
Sbjct: 64  SLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVV 123

Query: 138 RRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189
           RRQAVD+SPLRRVNQAIYLI  GARE+AFRNIKTIAECLADE+INA+K SSN
Sbjct: 124 RRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLADEIINASKESSN 175

Length = 193
>gnl|CDD|211618 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaeal)/S5(eukaryotic) Back     alignment and domain information
>gnl|CDD|235204 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed Back     alignment and domain information
>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e Back     alignment and domain information
>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7 Back     alignment and domain information
>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated Back     alignment and domain information
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 190
PTZ00091193 40S ribosomal protein S5; Provisional 100.0
PRK04027195 30S ribosomal protein S7P; Reviewed 100.0
TIGR01028186 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukary 100.0
KOG3291208 consensus Ribosomal protein S7 [Translation, ribos 100.0
COG0049148 RpsG Ribosomal protein S7 [Translation, ribosomal 100.0
TIGR01029154 rpsG_bact ribosomal protein S7, bacterial/organell 100.0
PRK05302156 30S ribosomal protein S7; Validated 100.0
CHL00053155 rps7 ribosomal protein S7 100.0
PF00177148 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: 100.0
>PTZ00091 40S ribosomal protein S5; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.3e-72  Score=466.07  Aligned_cols=172  Identities=77%  Similarity=1.198  Sum_probs=167.5

Q ss_pred             CccceeecccCCcceecCCCccccccccccccceeeecCCCCcccccccccCchhHHHHHHHhhccCCcCccHHHHHHHH
Q 029666           17 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV   96 (190)
Q Consensus        17 ~~~klf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piv~rliN~lM~~~~~~GKK~~A~rIv   96 (190)
                      .++|||||||++||+|+||||++||++++ |.++++|||+|||++++|+|++||+|+||||.||++|+|+|||++|++||
T Consensus         4 ~~~~lf~kw~~~~v~~~d~~l~~yi~~~~-~~~~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~grn~GKK~~A~~IV   82 (193)
T PTZ00091          4 NEPKLFGKWSYDDVQVSDLSLKDYIAVTT-KASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIV   82 (193)
T ss_pred             ccchhhCCcCcccCeecCcCHHHHhhccc-CCceeeccccchhhcCccCcccCHHHHHHHHHHhccCccCCcHHHHHHHH
Confidence            57899999999999999999999999983 45699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCChHHHHHHHHHhcCCceeeEEeecCCeeEEEeeecChhHHHHHHHHHHHHHHHhccCCCCCcHHHHH
Q 029666           97 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECL  176 (190)
Q Consensus        97 ~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~yqvPv~vsp~Rr~~lAirwIi~~ar~~~~r~~k~~~e~L  176 (190)
                      |+||++|+++|++||+|||++||+|++|++|++|+++||++|||||||+|.||+++|||||+++|++++||++++|++||
T Consensus        83 ~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~e~~ri~~GG~~yqvpVdVsp~Rr~~lAirwI~~~ar~~~fR~~ks~~e~L  162 (193)
T PTZ00091         83 KHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECL  162 (193)
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHhCCCCeeeEEeecCCeEEEEeeecChHHHHHHHHHHHHHHHHhhcccCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCC
Q 029666          177 ADELINAAKGSSN  189 (190)
Q Consensus       177 A~EiI~A~~~~g~  189 (190)
                      |+|||+|++|+|+
T Consensus       163 A~Eli~Aa~~~~~  175 (193)
T PTZ00091        163 ADEIINASKESSN  175 (193)
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999999965

>PRK04027 30S ribosomal protein S7P; Reviewed Back     alignment and domain information
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic) Back     alignment and domain information
>KOG3291 consensus Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle Back     alignment and domain information
>PRK05302 30S ribosomal protein S7; Validated Back     alignment and domain information
>CHL00053 rps7 ribosomal protein S7 Back     alignment and domain information
>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
3iz6_F200 Localization Of The Small Subunit Ribosomal Protein 3e-91
2zkq_g204 Structure Of A Mammalian Ribosomal 40s Subunit With 5e-82
3izb_F225 Localization Of The Small Subunit Ribosomal Protein 3e-73
3jyv_G186 Structure Of The 40s Rrna And Proteins And PE TRNA 3e-72
3zey_2190 High-resolution Cryo-electron Microscopy Structure 7e-69
2xzm_G200 Crystal Structure Of The Eukaryotic 40s Ribosomal S 1e-60
3j0l_T192 Core Of Mammalian 80s Pre-Ribosome In Complex With 2e-60
1s1h_G150 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-59
3j20_H215 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-31
1iqv_A218 Crystal Structure Analysis Of The Archaebacterial R 8e-31
3gty_S149 Promiscuous Substrate Recognition In Folding And As 2e-05
1fjg_G156 Structure Of The Thermus Thermophilus 30s Ribosomal 3e-05
1i94_G155 Crystal Structures Of The Small Ribosomal Subunit W 3e-05
1rss_A151 Ribosomal Protein S7 From Thermus Thermophilus Leng 3e-05
1fka_G151 Structure Of Functionally Activated Small Ribosomal 5e-05
1eg0_D146 Fitting Of Components With Known Structure Into An 6e-05
1qd7_F135 Partial Model For 30s Ribosomal Subunit Length = 13 6e-05
3bbn_G155 Homology Model For The Spinach Chloroplast 30s Subu 2e-04
>pdb|3IZ6|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 200 Back     alignment and structure 
Iteration: 1

 Score =  330 bits (846), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 154/170 (90%), Positives = 163/170 (95%)
Query: 20  KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSL 79
           KLFN W+FEDVQVNDISL+DY+ V + KHATY+PHTAGRYS KRFRKAQCP+VERLTNSL
Sbjct: 13  KLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSL 72
Query: 80  MMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRR 139
           MMHGRNNGKK+MAVRIVKHAMEIIHLLTD NPIQVIVDA+INSGPREDATRIGSAG VRR
Sbjct: 73  MMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRR 132
Query: 140 QAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189
           QAVDISPLRRVNQAIYL+TTGARESAFRNIKTIAECLADELINAAKGSSN
Sbjct: 133 QAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSN 182
>pdb|2ZKQ|GG Chain g, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204 Back     alignment and structure
>pdb|3IZB|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 225 Back     alignment and structure
>pdb|3JYV|G Chain G, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 186 Back     alignment and structure
>pdb|3ZEY|2 Chain 2, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 190 Back     alignment and structure
>pdb|2XZM|G Chain G, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 200 Back     alignment and structure
>pdb|3J0L|T Chain T, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 192 Back     alignment and structure
>pdb|1S1H|G Chain G, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i. Length = 150 Back     alignment and structure
>pdb|3J20|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 215 Back     alignment and structure
>pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archaebacterial Ribosomal Protein S7 Length = 218 Back     alignment and structure
>pdb|3GTY|S Chain S, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 149 Back     alignment and structure
>pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 156 Back     alignment and structure
>pdb|1I94|G Chain G, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 155 Back     alignment and structure
>pdb|1RSS|A Chain A, Ribosomal Protein S7 From Thermus Thermophilus Length = 151 Back     alignment and structure
>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 151 Back     alignment and structure
>pdb|1QD7|F Chain F, Partial Model For 30s Ribosomal Subunit Length = 135 Back     alignment and structure
>pdb|3BBN|G Chain G, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 155 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
2xzm_G200 Ribosomal protein S7 containing protein; ribosome, 2e-97
3u5c_F225 RP14, S2, YS8, 40S ribosomal protein S5; translati 1e-95
2zkq_g204 40S ribosomal protein S5E; protein-RNA complex, 40 3e-94
1iqv_A218 Ribosomal protein S7; RNA-binding, decoding center 3e-90
3bbn_G155 Ribosomal protein S7; small ribosomal subunit, spi 2e-13
3gty_S149 TF, 30S ribosomal protein S7; chaperone-client com 2e-12
1hus_A155 Ribosomal protein S7; RNA-binding protein, decodin 2e-12
1rss_A151 Ribosomal protein S7; RNA-binding, translation; 1. 3e-12
3i1m_G179 30S ribosomal protein S7; ribosome structure, prot 4e-12
3r8n_G151 30S ribosomal protein S7; protein biosynthesis, RN 1e-11
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T Length = 200 Back     alignment and structure
 Score =  279 bits (716), Expect = 2e-97
 Identities = 99/172 (57%), Positives = 133/172 (77%)

Query: 18  DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
             KLF +W +++V++ D    +YI     K   +VPHTAGRY VK+FRK QCPIVERL  
Sbjct: 10  QPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIG 69

Query: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 137
           +LM HGRN GKK + +++VK+A EIIHL+T +NP++V V AV N+GPRED+TRIG+AGVV
Sbjct: 70  TLMFHGRNAGKKALCIKVVKNAFEIIHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVV 129

Query: 138 RRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189
           R+QAVD++P+RRVN AIY I  G RESAF+++++IAE LADE+INA K ++ 
Sbjct: 130 RKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIAETLADEIINAEKNNTQ 181
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225 Back     alignment and structure
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris} Length = 204 Back     alignment and structure
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Length = 218 Back     alignment and structure
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 155 Back     alignment and structure
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} Length = 149 Back     alignment and structure
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Length = 155 Back     alignment and structure
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ... Length = 151 Back     alignment and structure
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G ... Length = 179 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 190
d1iqva_201 a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyroc 2e-67
d1rssa_145 a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermo 1e-28
d1husa_139 a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stear 1e-28
d2qalg1150 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherich 3e-26
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 Back     information, alignment and structure

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  202 bits (516), Expect = 2e-67
 Identities = 75/187 (40%), Positives = 102/187 (54%), Gaps = 20/187 (10%)

Query: 19  VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNS 78
           +K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N 
Sbjct: 1   IKVMGRWSTEDVEVKDPSLKPYINLEP----RLLPHTHGRHAKKHFGKANVHIVERLINK 56

Query: 79  LMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINS 122
           +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+
Sbjct: 57  VMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 116

Query: 123 GPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELIN 182
            PRED T +   G+    AVDISPLRR++ A+  I  GA    +R   + AE LA+E+I 
Sbjct: 117 APREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 176

Query: 183 AAKGSSN 189
           AA     
Sbjct: 177 AANKDPK 183
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
d1iqva_201 Ribosomal protein S7 {Archaeon Pyrococcus horikosh 100.0
d2qalg1150 Ribosomal protein S7 {Escherichia coli [TaxId: 562 100.0
d1husa_139 Ribosomal protein S7 {Bacillus stearothermophilus 100.0
d1rssa_145 Ribosomal protein S7 {Thermus thermophilus [TaxId: 100.0
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=0  Score=421.03  Aligned_cols=168  Identities=45%  Similarity=0.651  Sum_probs=164.4

Q ss_pred             CCEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-------------
Q ss_conf             3100012589404517886310000345653132048987654465555760577989896416876-------------
Q 029666           19 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN-------------   85 (190)
Q Consensus        19 ~klf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM~~~~~-------------   85 (190)
                      ||||||||++||+|+||||++||+++    +.++|||+|||++++|.|++|||||||+|.||++|+|             
T Consensus         1 iklf~kw~~~~v~v~d~~l~~yi~~~----~~~~pht~gr~~~~~f~k~~~~iVERlin~lM~~G~~~~~~~~~~~~~~h   76 (201)
T d1iqva_           1 IKVMGRWSTEDVEVKDPSLKPYINLE----PRLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREH   76 (201)
T ss_dssp             CCBTTTBCCTTCCCCCTTTGGGSBCS----CC------------------CBHHHHHHHHHHTTCCC-------------
T ss_pred             CCCCCCCCCCCCEECCCCHHHEEECC----CEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHCC
T ss_conf             97527767766267375445325147----35604645504454405210037999987764355543234443000011


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             ---75088999999999999996407885799999999257740047730699357971124846789999999999997
Q 029666           86 ---NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGAR  162 (190)
Q Consensus        86 ---~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~vpv~isp~Rr~~lAirwI~~~ar  162 (190)
                         +|||.+|++||++||++|+++|++||++||++||+|++|++|++++++||++||+|||++|.||+++||+||++||+
T Consensus        77 ~~~~GKK~~A~kIv~~A~~iI~~kt~~nPl~Vl~~AI~N~~P~~Ev~~~r~GG~~yqvPv~vsp~Rr~~lAirwI~~~ar  156 (201)
T d1iqva_          77 RSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGAS  156 (201)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHH
T ss_conf             35776299999999999999998628991899999998503448999974288401267056788889999999999998


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             3047997748999999999997089999
Q 029666          163 ESAFRNIKTIAECLADELINAAKGSSNR  190 (190)
Q Consensus       163 ~~~~r~~k~~~e~LA~EiI~A~~~~g~~  190 (190)
                      +++||+.++|++|||+|||+||+|+|+|
T Consensus       157 ~~~~r~~ks~~e~LA~Eii~Aa~~~~ks  184 (201)
T d1iqva_         157 AKCYRTKMSFAEALAEEIILAANKDPKS  184 (201)
T ss_dssp             HHHHHSSSCHHHHHHHHHHHHHTTCTTC
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             7547887879999999999997487886
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure