Citrus Sinensis ID: 029673

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTSTCHSAH
cEEEEEEEccccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHcccEEEEEcccccccccccEEEEEEccEEEEEEccccccccccHHHHHHHHHHccccEEEEccccEEEEEEEccEEEEccccccccccccccccccEEEEEEEEccEEEEEEEEEcccEEEEEEEEEEEcccccccc
cEEEEEEEcccccccHHccHHHHHHHHccccccEEEEEcccccHHHHHHHHHHcccEEEEEcccccccccccEEEEEEccEEEEEEcccEEEccccHHHHHHHHHHcccEEEEEccccccEEEEcccEEEEccccccccccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEEEEccccccccc
MVLVLALgdlhiphraadlpakfksmlvpgkiqHIVCTGNLCIKEVHDYLKIIcpdlhiirgeydeetrypetktltigqfklglchghqvipwgdlDSLAMLQRQLDVDILVTGHTHqftaykheggvvinpgsatgafssitydvnpsfvlmdidgLRVVVYVYELIDgevkvdkidfkktstchsah
MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIdgevkvdkidfkktstchsah
MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTSTCHSAH
*VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK*********
MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVD**************
MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK*********
MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTSTCHSAH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query190 2.2.26 [Sep-21-2011]
Q9STT2190 Vacuolar protein sorting- yes no 0.994 0.994 0.883 3e-96
Q7ZV68182 Vacuolar protein sorting- yes no 0.957 1.0 0.648 1e-69
Q5R9Z1182 Vacuolar protein sorting- yes no 0.957 1.0 0.642 3e-69
Q9QZ88182 Vacuolar protein sorting- yes no 0.957 1.0 0.642 3e-69
B2RZ78182 Vacuolar protein sorting- yes no 0.957 1.0 0.642 3e-69
Q3T0M0186 Vacuolar protein sorting- yes no 0.952 0.973 0.646 5e-69
Q9UBQ0182 Vacuolar protein sorting- yes no 0.952 0.994 0.646 7e-69
Q6DEU3182 Vacuolar protein sorting- yes no 0.957 1.0 0.642 1e-68
Q6GP62182 Vacuolar protein sorting- N/A no 0.957 1.0 0.642 1e-68
Q5ZIL2186 Vacuolar protein sorting- yes no 0.952 0.973 0.635 4e-68
>sp|Q9STT2|VPS29_ARATH Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana GN=VPS29 PE=2 SV=1 Back     alignment and function desciption
 Score =  350 bits (898), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 167/189 (88%), Positives = 175/189 (92%)

Query: 1   MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60
           MVLVLALGDLH+PHRAADLP KFKSMLVPGKIQHI+CTGNLCIKE+HDYLK ICPDLHI+
Sbjct: 1   MVLVLALGDLHVPHRAADLPPKFKSMLVPGKIQHIICTGNLCIKEIHDYLKTICPDLHIV 60

Query: 61  RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 120
           RGE+DE+ RYPE KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQL VDILVTGHTHQF
Sbjct: 61  RGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLGVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGA+SSI  DVNPSFVLMDIDG R VVYVYELIDGEVKVDKI+F
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFRAVVYVYELIDGEVKVDKIEF 180

Query: 181 KKTSTCHSA 189
           KK  T  S 
Sbjct: 181 KKPPTTSSG 189
Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. Required for the auxin-carrier protein PIN2 sorting to the lytic vacuolar pathway and the PIN1 recycling to the plasma membrane. Also involved in the efficient sorting of seed storage proteins globulin 12S and albumin 2S. The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7ZV68|VPS29_DANRE Vacuolar protein sorting-associated protein 29 OS=Danio rerio GN=vps29 PE=2 SV=1 Back     alignment and function description
>sp|Q5R9Z1|VPS29_PONAB Vacuolar protein sorting-associated protein 29 OS=Pongo abelii GN=VPS29 PE=2 SV=1 Back     alignment and function description
>sp|Q9QZ88|VPS29_MOUSE Vacuolar protein sorting-associated protein 29 OS=Mus musculus GN=Vps29 PE=1 SV=1 Back     alignment and function description
>sp|B2RZ78|VPS29_RAT Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus GN=Vps29 PE=1 SV=2 Back     alignment and function description
>sp|Q3T0M0|VPS29_BOVIN Vacuolar protein sorting-associated protein 29 OS=Bos taurus GN=VPS29 PE=2 SV=1 Back     alignment and function description
>sp|Q9UBQ0|VPS29_HUMAN Vacuolar protein sorting-associated protein 29 OS=Homo sapiens GN=VPS29 PE=1 SV=1 Back     alignment and function description
>sp|Q6DEU3|VPS29_XENTR Vacuolar protein sorting-associated protein 29 OS=Xenopus tropicalis GN=vps29 PE=2 SV=1 Back     alignment and function description
>sp|Q6GP62|VPS29_XENLA Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis GN=vps29 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIL2|VPS29_CHICK Vacuolar protein sorting-associated protein 29 OS=Gallus gallus GN=VPS29 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
357462271190 Vacuolar protein sorting [Medicago trunc 1.0 1.0 0.942 1e-102
351727985190 uncharacterized protein LOC100306173 [Gl 1.0 1.0 0.942 1e-101
388497064190 unknown [Medicago truncatula] 1.0 1.0 0.936 1e-101
255540969191 Vacuolar protein sorting, putative [Rici 1.0 0.994 0.942 1e-100
115445439188 Os02g0265400 [Oryza sativa Japonica Grou 0.989 1.0 0.930 1e-99
449440770188 PREDICTED: vacuolar protein sorting-asso 0.973 0.984 0.956 1e-99
118486727191 unknown [Populus trichocarpa] 1.0 0.994 0.931 1e-99
346470445190 hypothetical protein [Amblyomma maculatu 0.994 0.994 0.931 1e-99
224116708191 predicted protein [Populus trichocarpa] 1.0 0.994 0.926 4e-99
224114377191 predicted protein [Populus trichocarpa] 1.0 0.994 0.921 4e-99
>gi|357462271|ref|XP_003601417.1| Vacuolar protein sorting [Medicago truncatula] gi|355490465|gb|AES71668.1| Vacuolar protein sorting [Medicago truncatula] Back     alignment and taxonomy information
 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/190 (94%), Positives = 186/190 (97%)

Query: 1   MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60
           MVLVLALGDLH+PHRAADLPAKFKSMLVPGKIQHI+CTGNLCIKEVHDYLK +CPDLHI 
Sbjct: 1   MVLVLALGDLHVPHRAADLPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTLCPDLHIT 60

Query: 61  RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 120
           RGEYDEET+YPETKTLTIGQFKLGLCHGHQV+PWGDLDSLAMLQRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEETKYPETKTLTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGA+SSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTSTCHSAH 190
           KKTS+  SAH
Sbjct: 181 KKTSSNSSAH 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351727985|ref|NP_001238715.1| uncharacterized protein LOC100306173 [Glycine max] gi|255627763|gb|ACU14226.1| unknown [Glycine max] gi|366985121|gb|AEX09385.1| vacuolar sorting protein [Glycine max] Back     alignment and taxonomy information
>gi|388497064|gb|AFK36598.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255540969|ref|XP_002511549.1| Vacuolar protein sorting, putative [Ricinus communis] gi|223550664|gb|EEF52151.1| Vacuolar protein sorting, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|115445439|ref|NP_001046499.1| Os02g0265400 [Oryza sativa Japonica Group] gi|50251955|dbj|BAD27890.1| putative vacuolar protein sorting; Vps29p [Oryza sativa Japonica Group] gi|113536030|dbj|BAF08413.1| Os02g0265400 [Oryza sativa Japonica Group] gi|125538892|gb|EAY85287.1| hypothetical protein OsI_06659 [Oryza sativa Indica Group] gi|215701252|dbj|BAG92676.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765582|dbj|BAG87279.1| unnamed protein product [Oryza sativa Japonica Group] gi|222622567|gb|EEE56699.1| hypothetical protein OsJ_06169 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449440770|ref|XP_004138157.1| PREDICTED: vacuolar protein sorting-associated protein 29-like [Cucumis sativus] gi|449477288|ref|XP_004154982.1| PREDICTED: vacuolar protein sorting-associated protein 29-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118486727|gb|ABK95199.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|346470445|gb|AEO35067.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|224116708|ref|XP_002331858.1| predicted protein [Populus trichocarpa] gi|222875376|gb|EEF12507.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114377|ref|XP_002316742.1| predicted protein [Populus trichocarpa] gi|222859807|gb|EEE97354.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
TAIR|locus:2100362190 MAG1 "AT3G47810" [Arabidopsis 0.989 0.989 0.888 1.9e-90
ZFIN|ZDB-GENE-030131-8764182 vps29 "vacuolar protein sortin 0.957 1.0 0.648 2.5e-65
MGI|MGI:1928344182 Vps29 "vacuolar protein sortin 0.957 1.0 0.642 4.1e-65
RGD|1308332182 Vps29 "vacuolar protein sortin 0.957 1.0 0.642 4.1e-65
UNIPROTKB|G3X6P5185 VPS29 "Vacuolar protein sortin 0.952 0.978 0.646 5.2e-65
UNIPROTKB|Q3T0M0186 VPS29 "Vacuolar protein sortin 0.952 0.973 0.646 5.2e-65
UNIPROTKB|Q9UBQ0182 VPS29 "Vacuolar protein sortin 0.952 0.994 0.646 5.2e-65
UNIPROTKB|F1RNN0186 VPS29 "Uncharacterized protein 0.952 0.973 0.646 5.2e-65
UNIPROTKB|E2R8A2180 VPS29 "Uncharacterized protein 0.947 1.0 0.65 6.7e-65
UNIPROTKB|F8VXU5214 VPS29 "Vacuolar protein sortin 0.947 0.841 0.65 6.7e-65
TAIR|locus:2100362 MAG1 "AT3G47810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 167/188 (88%), Positives = 175/188 (93%)

Query:     1 MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60
             MVLVLALGDLH+PHRAADLP KFKSMLVPGKIQHI+CTGNLCIKE+HDYLK ICPDLHI+
Sbjct:     1 MVLVLALGDLHVPHRAADLPPKFKSMLVPGKIQHIICTGNLCIKEIHDYLKTICPDLHIV 60

Query:    61 RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 120
             RGE+DE+ RYPE KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQL VDILVTGHTHQF
Sbjct:    61 RGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLGVDILVTGHTHQF 120

Query:   121 TAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
             TAYKHEGGVVINPGSATGA+SSI  DVNPSFVLMDIDG R VVYVYELIDGEVKVDKI+F
Sbjct:   121 TAYKHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFRAVVYVYELIDGEVKVDKIEF 180

Query:   181 KKTSTCHS 188
             KK  T  S
Sbjct:   181 KKPPTTSS 188
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0005771 "multivesicular body" evidence=IDA
GO:0008333 "endosome to lysosome transport" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0030904 "retromer complex" evidence=ISS;IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0016197 "endosomal transport" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
GO:0001881 "receptor recycling" evidence=IDA
GO:0007034 "vacuolar transport" evidence=IMP
ZFIN|ZDB-GENE-030131-8764 vps29 "vacuolar protein sorting 29 (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1928344 Vps29 "vacuolar protein sorting 29 (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308332 Vps29 "vacuolar protein sorting 29 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3X6P5 VPS29 "Vacuolar protein sorting-associated protein 29" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0M0 VPS29 "Vacuolar protein sorting-associated protein 29" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBQ0 VPS29 "Vacuolar protein sorting-associated protein 29" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RNN0 VPS29 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8A2 VPS29 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F8VXU5 VPS29 "Vacuolar protein sorting-associated protein 29" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7ZV68VPS29_DANRE3, ., 1, ., 3, ., 30.64830.95781.0yesno
Q6GP62VPS29_XENLA3, ., 1, ., 3, ., 30.64280.95781.0N/Ano
Q5R9Z1VPS29_PONAB3, ., 1, ., 3, ., 30.64280.95781.0yesno
Q9QZ88VPS29_MOUSE3, ., 1, ., 3, ., 30.64280.95781.0yesno
B2RZ78VPS29_RAT3, ., 1, ., 3, ., 30.64280.95781.0yesno
Q3T0M0VPS29_BOVIN3, ., 1, ., 3, ., 30.64640.95260.9731yesno
Q9UTI5VPS29_SCHPONo assigned EC number0.45400.95260.9679yesno
Q9STT2VPS29_ARATHNo assigned EC number0.88350.99470.9947yesno
Q54IF7VPS29_DICDI3, ., 1, ., 3, ., 30.59660.95260.9890yesno
Q6DEU3VPS29_XENTR3, ., 1, ., 3, ., 30.64280.95781.0yesno
Q5ZIL2VPS29_CHICK3, ., 1, ., 3, ., 30.63530.95260.9731yesno
Q9UBQ0VPS29_HUMAN3, ., 1, ., 3, ., 30.64640.95260.9945yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.30.976
3rd Layer3.1.3.30.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
cd07394178 cd07394, MPP_Vps29, Homo sapiens Vps29 and related 1e-121
COG0622172 COG0622, COG0622, Predicted phosphoesterase [Gener 2e-32
TIGR00040158 TIGR00040, yfcE, phosphoesterase, MJ0936 family 2e-27
pfam12850146 pfam12850, Metallophos_2, Calcineurin-like phospho 4e-26
cd00841155 cd00841, MPP_YfcE, Escherichia coli YfcE and relat 4e-17
PRK09453182 PRK09453, PRK09453, phosphodiesterase; Provisional 5e-07
TIGR00024225 TIGR00024, SbcD_rel_arch, putative phosphoesterase 1e-05
>gnl|CDD|163637 cd07394, MPP_Vps29, Homo sapiens Vps29 and related proteins, metallophosphatase domain Back     alignment and domain information 
 Score =  339 bits (872), Expect = e-121
 Identities = 128/178 (71%), Positives = 154/178 (86%)

Query: 3   LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62
           LVL +GDLHIPHRA+DLPAKFK +LVPGKIQH++CTGNLC KE +DYLK I PD+HI+RG
Sbjct: 1   LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSKETYDYLKTIAPDVHIVRG 60

Query: 63  EYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTA 122
           ++DE   YPETK +T+GQFK+GL HGHQV+PWGD DSLA LQRQLDVDIL++GHTH+F A
Sbjct: 61  DFDENLNYPETKVITVGQFKIGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKFEA 120

Query: 123 YKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           ++HEG   INPGSATGAFS +  +V PSFVLMDI G +VV YVY+LIDGEVKV+KI++
Sbjct: 121 FEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVVTYVYQLIDGEVKVEKIEY 178

Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 178
>gnl|CDD|223695 COG0622, COG0622, Predicted phosphoesterase [General function prediction only] Back     alignment and domain information
>gnl|CDD|232794 TIGR00040, yfcE, phosphoesterase, MJ0936 family Back     alignment and domain information
>gnl|CDD|221807 pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain Back     alignment and domain information
>gnl|CDD|163617 cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins, metallophosphatase domain Back     alignment and domain information
>gnl|CDD|181869 PRK09453, PRK09453, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|129135 TIGR00024, SbcD_rel_arch, putative phosphoesterase, SbcD/Mre11-related Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 190
cd07394178 MPP_Vps29 Homo sapiens Vps29 and related proteins, 100.0
COG0622172 Predicted phosphoesterase [General function predic 100.0
KOG3325183 consensus Membrane coat complex Retromer, subunit 100.0
TIGR00040158 yfcE phosphoesterase, MJ0936 family. Members of th 100.0
PRK09453182 phosphodiesterase; Provisional 99.96
cd00841155 MPP_YfcE Escherichia coli YfcE and related protein 99.96
PF12850156 Metallophos_2: Calcineurin-like phosphoesterase su 99.95
cd07388224 MPP_Tt1561 Thermus thermophilus Tt1561 and related 99.89
PRK05340241 UDP-2,3-diacylglucosamine hydrolase; Provisional 99.88
cd07379135 MPP_239FB Homo sapiens 239FB and related proteins, 99.87
COG2129226 Predicted phosphoesterases, related to the Icc pro 99.86
cd07400144 MPP_YydB Bacillus subtilis YydB and related protei 99.86
PRK11148275 cyclic 3',5'-adenosine monophosphate phosphodieste 99.84
TIGR01854231 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. 99.84
COG2908237 Uncharacterized protein conserved in bacteria [Fun 99.83
cd07402240 MPP_GpdQ Enterobacter aerogenes GpdQ and related p 99.83
TIGR00583405 mre11 DNA repair protein (mre11). All proteins in 99.82
cd07392188 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel 99.81
cd07398217 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat 99.8
cd07395262 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, 99.79
cd07403129 MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel 99.78
cd07424207 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do 99.76
cd00840223 MPP_Mre11_N Mre11 nuclease, N-terminal metallophos 99.76
PRK09968218 serine/threonine-specific protein phosphatase 2; P 99.75
PF14582255 Metallophos_3: Metallophosphoesterase, calcineurin 99.74
cd07383199 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase 99.73
cd07396267 MPP_Nbla03831 Homo sapiens Nbla03831 and related p 99.73
cd07393232 MPP_DR1119 Deinococcus radiodurans DR1119 and rela 99.73
PHA02546340 47 endonuclease subunit; Provisional 99.72
cd07390168 MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro 99.71
cd07404166 MPP_MS158 Microscilla MS158 and related proteins, 99.7
PRK11340271 phosphodiesterase YaeI; Provisional 99.69
PRK11439218 pphA serine/threonine protein phosphatase 1; Provi 99.68
cd07423234 MPP_PrpE Bacillus subtilis PrpE and related protei 99.68
cd07397238 MPP_DevT Myxococcus xanthus DevT and related prote 99.67
PRK04036504 DNA polymerase II small subunit; Validated 99.67
COG0420 390 SbcD DNA repair exonuclease [DNA replication, reco 99.67
cd07399214 MPP_YvnB Bacillus subtilis YvnB and related protei 99.66
PF00149200 Metallophos: Calcineurin-like phosphoesterase; Int 99.66
cd07378277 MPP_ACP5 Homo sapiens acid phosphatase 5 and relat 99.63
PRK10966 407 exonuclease subunit SbcD; Provisional 99.63
TIGR03729239 acc_ester putative phosphoesterase. Members of thi 99.63
cd00839294 MPP_PAPs purple acid phosphatases of the metalloph 99.61
cd07385223 MPP_YkuE_C Bacillus subtilis YkuE and related prot 99.61
cd07386243 MPP_DNA_pol_II_small_archeal_C archeal DNA polymer 99.6
COG4186186 Predicted phosphoesterase or phosphohydrolase [Gen 99.58
cd00838131 MPP_superfamily metallophosphatase superfamily, me 99.56
TIGR00619253 sbcd exonuclease SbcD. This family is based on the 99.56
COG1409301 Icc Predicted phosphohydrolases [General function 99.56
TIGR00024225 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11 99.55
cd07391172 MPP_PF1019 Pyrococcus furiosus PF1019 and related 99.52
cd08165156 MPP_MPPE1 human MPPE1 and related proteins, metall 99.48
cd07401256 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal 99.42
cd07384171 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re 99.41
PLN02533427 probable purple acid phosphatase 99.41
cd07425208 MPP_Shelphs Shewanella-like phosphatases, metallop 99.39
PRK13625245 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision 99.36
PRK00166275 apaH diadenosine tetraphosphatase; Reviewed 99.33
KOG2310 646 consensus DNA repair exonuclease MRE11 [Replicatio 99.26
KOG1432379 consensus Predicted DNA repair exonuclease SIA1 [G 99.24
COG1311481 HYS2 Archaeal DNA polymerase II, small subunit/DNA 99.24
PTZ00422394 glideosome-associated protein 50; Provisional 99.24
COG1408284 Predicted phosphohydrolases [General function pred 99.24
cd08166195 MPP_Cdc1_like_1 uncharacterized subgroup related t 99.17
cd00845252 MPP_UshA_N_like Escherichia coli UshA-like family, 99.17
COG1768230 Predicted phosphohydrolase [General function predi 99.14
cd07410277 MPP_CpdB_N Escherichia coli CpdB and related prote 99.13
COG1407235 Predicted ICC-like phosphoesterases [General funct 99.13
cd00144225 MPP_PPP_family phosphoprotein phosphatases of the 99.12
cd07406257 MPP_CG11883_N Drosophila melanogaster CG11883 and 99.07
cd07387257 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2 99.06
cd07408257 MPP_SA0022_N Staphylococcus aureus SA0022 and rela 99.05
TIGR00668279 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric 99.04
KOG2679336 consensus Purple (tartrate-resistant) acid phospha 99.04
cd08163257 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related 98.96
PHA02239235 putative protein phosphatase 98.95
cd08164193 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related 98.9
cd00842296 MPP_ASMase acid sphingomyelinase and related prote 98.88
cd07422257 MPP_ApaH Escherichia coli ApaH and related protein 98.86
cd07411264 MPP_SoxB_N Thermus thermophilus SoxB and related p 98.84
smart00156271 PP2Ac Protein phosphatase 2A homologues, catalytic 98.83
cd00844262 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t 98.81
cd07412288 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and 98.79
cd07405285 MPP_UshA_N Escherichia coli UshA and related prote 98.71
cd07380150 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re 98.69
PRK09419 1163 bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 98.66
cd07413222 MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat 98.6
cd07417316 MPP_PP5_C PP5, C-terminal metallophosphatase domai 98.59
cd07421 304 MPP_Rhilphs Rhilph phosphatases, metallophosphatas 98.56
cd07416305 MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca 98.53
KOG1378452 consensus Purple acid phosphatase [Carbohydrate tr 98.53
cd07409281 MPP_CD73_N CD73 ecto-5'-nucleotidase and related p 98.53
cd07414293 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzyme 98.49
PTZ00480320 serine/threonine-protein phosphatase; Provisional 98.47
PRK09558 551 ushA bifunctional UDP-sugar hydrolase/5'-nucleotid 98.45
cd07407282 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and 98.45
cd07415285 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein 98.43
PTZ00239303 serine/threonine protein phosphatase 2A; Provision 98.4
cd07420321 MPP_RdgC Drosophila melanogaster RdgC and related 98.37
PRK09419 1163 bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 98.36
cd07419311 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a 98.35
PTZ00244294 serine/threonine-protein phosphatase PP1; Provisio 98.31
cd07418 377 MPP_PP7 PP7, metallophosphatase domain. PP7 is a p 98.21
TIGR01390 626 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphod 98.2
cd07382255 MPP_DR1281 Deinococcus radiodurans DR1281 and rela 98.19
TIGR01530 550 nadN NAD pyrophosphatase/5'-nucleotidase NadN. Thi 98.18
TIGR00282266 metallophosphoesterase, MG_246/BB_0505 family. A m 98.16
PRK11907 814 bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 98.16
PRK09418 780 bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 98.15
PRK09420 649 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosp 98.12
cd08162313 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA 98.03
KOG3662 410 consensus Cell division control protein/predicted 98.0
COG0737 517 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesteras 97.98
PF04042209 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit 97.49
TIGR03767496 P_acnes_RR metallophosphoesterase, PPA1498 family. 97.45
KOG0372303 consensus Serine/threonine specific protein phosph 96.95
KOG0374331 consensus Serine/threonine specific protein phosph 96.94
KOG3947305 consensus Phosphoesterases [General function predi 96.93
COG1692266 Calcineurin-like phosphoesterase [General function 96.88
KOG2863 456 consensus RNA lariat debranching enzyme [RNA proce 96.77
KOG0373306 consensus Serine/threonine specific protein phosph 96.55
KOG3770 577 consensus Acid sphingomyelinase and PHM5 phosphate 96.29
PF13277253 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C. 95.35
TIGR03768492 RPA4764 metallophosphoesterase, RPA4764 family. Th 95.18
PTZ00235291 DNA polymerase epsilon subunit B; Provisional 95.14
TIGR03768 492 RPA4764 metallophosphoesterase, RPA4764 family. Th 94.79
TIGR03767 496 P_acnes_RR metallophosphoesterase, PPA1498 family. 94.69
KOG0371319 consensus Serine/threonine protein phosphatase 2A, 94.45
PHA03008234 hypothetical protein; Provisional 93.48
KOG2476 528 consensus Uncharacterized conserved protein [Funct 91.88
KOG1625600 consensus DNA polymerase alpha-primase complex, po 90.9
KOG0375 517 consensus Serine-threonine phosphatase 2B, catalyt 90.71
KOG3818525 consensus DNA polymerase epsilon, subunit B [Repli 90.58
KOG4419 602 consensus 5' nucleotidase [Nucleotide transport an 90.51
smart00854239 PGA_cap Bacterial capsule synthesis protein PGA_ca 89.7
PF06874640 FBPase_2: Firmicute fructose-1,6-bisphosphatase; I 89.3
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 87.27
cd07381239 MPP_CapA CapA and related proteins, metallophospha 86.52
PF09423 453 PhoD: PhoD-like phosphatase; InterPro: IPR018946 T 84.21
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain Back     alignment and domain information 
Probab=100.00  E-value=2.4e-37  Score=235.59  Aligned_cols=178  Identities=72%  Similarity=1.246  Sum_probs=155.6

Q ss_pred             EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCcccccCCCCceEEEECCEE
Q 029673            3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFK   82 (190)
Q Consensus         3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~   82 (190)
                      +|+++||+|++.+...+.+.+.+++++.++|.|+|+||+++.++++.|++++.++++|.||||....+|....++++|++
T Consensus         1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~~~~~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~g~~   80 (178)
T cd07394           1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSKETYDYLKTIAPDVHIVRGDFDENLNYPETKVITVGQFK   80 (178)
T ss_pred             CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCCHHHHHHHHhhCCceEEEECCCCccccCCCcEEEEECCEE
Confidence            58999999976555456677888886678999999999999999999988766799999999987788999999999999


Q ss_pred             EEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeEE
Q 029673           83 LGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVV  162 (190)
Q Consensus        83 i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~~  162 (190)
                      |+++||+++.++...+.+..+++..++|+++|||||.+.....++++++||||++.++.+++..+.++|++++++++.++
T Consensus        81 i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p~~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~  160 (178)
T cd07394          81 IGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKFEAFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVV  160 (178)
T ss_pred             EEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcceEEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEE
Confidence            99999998777666667777777789999999999999998999999999999997655445566789999999999999


Q ss_pred             EEEEEeeCCeEEEEEEEE
Q 029673          163 VYVYELIDGEVKVDKIDF  180 (190)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~  180 (190)
                      ++++++.+++++++.++|
T Consensus       161 ~~~~~l~~~~~~~~~~~~  178 (178)
T cd07394         161 TYVYQLIDGEVKVEKIEY  178 (178)
T ss_pred             EEEEEEECCcEEEEEecC
Confidence            999999999999998875

Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
>COG0622 Predicted phosphoesterase [General function prediction only] Back     alignment and domain information
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00040 yfcE phosphoesterase, MJ0936 family Back     alignment and domain information
>PRK09453 phosphodiesterase; Provisional Back     alignment and domain information
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain Back     alignment and domain information
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [] Back     alignment and domain information
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional Back     alignment and domain information
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain Back     alignment and domain information
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only] Back     alignment and domain information
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional Back     alignment and domain information
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase Back     alignment and domain information
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR00583 mre11 DNA repair protein (mre11) Back     alignment and domain information
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain Back     alignment and domain information
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain Back     alignment and domain information
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional Back     alignment and domain information
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A Back     alignment and domain information
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain Back     alignment and domain information
>PHA02546 47 endonuclease subunit; Provisional Back     alignment and domain information
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK11340 phosphodiesterase YaeI; Provisional Back     alignment and domain information
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional Back     alignment and domain information
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK04036 DNA polymerase II small subunit; Validated Back     alignment and domain information
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain Back     alignment and domain information
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 Back     alignment and domain information
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK10966 exonuclease subunit SbcD; Provisional Back     alignment and domain information
>TIGR03729 acc_ester putative phosphoesterase Back     alignment and domain information
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain Back     alignment and domain information
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only] Back     alignment and domain information
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>TIGR00619 sbcd exonuclease SbcD Back     alignment and domain information
>COG1409 Icc Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related Back     alignment and domain information
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>PLN02533 probable purple acid phosphatase Back     alignment and domain information
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain Back     alignment and domain information
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional Back     alignment and domain information
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed Back     alignment and domain information
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair] Back     alignment and domain information
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only] Back     alignment and domain information
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00422 glideosome-associated protein 50; Provisional Back     alignment and domain information
>COG1408 Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain Back     alignment and domain information
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain Back     alignment and domain information
>COG1768 Predicted phosphohydrolase [General function prediction only] Back     alignment and domain information
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only] Back     alignment and domain information
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain Back     alignment and domain information
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical) Back     alignment and domain information
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>PHA02239 putative protein phosphatase Back     alignment and domain information
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain Back     alignment and domain information
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain Back     alignment and domain information
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain Back     alignment and domain information
>cd07416 MPP_PP2B PP2B, metallophosphatase domain Back     alignment and domain information
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain Back     alignment and domain information
>PTZ00480 serine/threonine-protein phosphatase; Provisional Back     alignment and domain information
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed Back     alignment and domain information
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain Back     alignment and domain information
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional Back     alignment and domain information
>cd07418 MPP_PP7 PP7, metallophosphatase domain Back     alignment and domain information
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase Back     alignment and domain information
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN Back     alignment and domain information
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family Back     alignment and domain information
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed Back     alignment and domain information
>cd08162 MPP_PhoA_N Synechococcus sp Back     alignment and domain information
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism] Back     alignment and domain information
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast Back     alignment and domain information
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family Back     alignment and domain information
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG3947 consensus Phosphoesterases [General function prediction only] Back     alignment and domain information
>COG1692 Calcineurin-like phosphoesterase [General function prediction only] Back     alignment and domain information
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification] Back     alignment and domain information
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] Back     alignment and domain information
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism] Back     alignment and domain information
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C Back     alignment and domain information
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family Back     alignment and domain information
>PTZ00235 DNA polymerase epsilon subunit B; Provisional Back     alignment and domain information
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family Back     alignment and domain information
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family Back     alignment and domain information
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms] Back     alignment and domain information
>PHA03008 hypothetical protein; Provisional Back     alignment and domain information
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair] Back     alignment and domain information
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair] Back     alignment and domain information
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism] Back     alignment and domain information
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap Back     alignment and domain information
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate [] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain Back     alignment and domain information
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
1z2w_A192 Crystal Structure Of Mouse Vps29 Complexed With Mn2 4e-70
1w24_A182 Crystal Structure Of Human Vps29 Length = 182 6e-70
2r17_A183 Functional Architecture Of The Retromer Cargo-Recog 9e-67
2a22_A215 Structure Of Vacuolar Protein Sorting 29 From Crypt 1e-45
2kkn_A178 Solution Nmr Structure Of Themotoga Maritima Protei 3e-04
>pdb|1Z2W|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+ Length = 192 Back     alignment and structure 
Iteration: 1

 Score =  259 bits (663), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 117/182 (64%), Positives = 149/182 (81%)
Query: 2   VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIR 61
           +LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK +  D+HI+R
Sbjct: 11  MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 70
Query: 62  GEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFT 121
           G++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F 
Sbjct: 71  GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 130
Query: 122 AYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
           A++HE    INPGSATGA++++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++K
Sbjct: 131 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 190
Query: 182 KT 183
           K+
Sbjct: 191 KS 192
>pdb|1W24|A Chain A, Crystal Structure Of Human Vps29 Length = 182 Back     alignment and structure
>pdb|2R17|A Chain A, Functional Architecture Of The Retromer Cargo-Recognition Complex Length = 183 Back     alignment and structure
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From Cryptosporidium Parvum Length = 215 Back     alignment and structure
>pdb|2KKN|A Chain A, Solution Nmr Structure Of Themotoga Maritima Protein Tm1076: Northeast Structural Genomics Consortium Target Vt57 Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
2a22_A215 Vacuolar protein sorting 29; alpha-beta-BETA-alpha 3e-76
1z2w_A192 Vacuolar protein sorting 29; VPS29, retromer, phos 1e-71
2kkn_A178 Uncharacterized protein; protein phosphatase 2A ho 2e-49
3ck2_A176 Conserved uncharacterized protein (predicted phosp 7e-32
1s3l_A190 Hypothetical protein MJ0936; phosphodiesterase, nu 3e-18
1su1_A208 Hypothetical protein YFCE; structural genomics, ph 8e-15
3qfm_A270 SAPH, putative uncharacterized protein; sandwich f 9e-06
1nnw_A252 Hypothetical protein; structural genomics, PSI, pr 9e-04
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Length = 215 Back     alignment and structure
 Score =  226 bits (578), Expect = 3e-76
 Identities = 86/189 (45%), Positives = 125/189 (66%), Gaps = 9/189 (4%)

Query: 3   LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62
           LVL +GDL IP+ A +LP+ F+ +L   KI +++CTGN+C +E  + LK I  +++I+ G
Sbjct: 27  LVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNITKNVYIVSG 86

Query: 63  EYDEE---------TRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILV 113
           + D             +PE   + IG+FK+GL HG+QV+PW D  SL   QR+LD DILV
Sbjct: 87  DLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILV 146

Query: 114 TGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEV 173
           TGHTH+   ++  G + +NPG+ATGAFS++T D  PSF+LM + G +VV+YVY+L DG+ 
Sbjct: 147 TGHTHKLRVFEKNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVLYVYDLRDGKT 206

Query: 174 KVDKIDFKK 182
            V   +F K
Sbjct: 207 NVAMSEFSK 215
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A Length = 192 Back     alignment and structure
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Length = 178 Back     alignment and structure
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7 Length = 176 Back     alignment and structure
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Length = 190 Back     alignment and structure
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Length = 208 Back     alignment and structure
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A* Length = 270 Back     alignment and structure
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A Length = 252 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 190
d2a22a1193 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, V 8e-60
d1z2wa1182 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, V 9e-56
d3ck2a1173 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 5e-21
d1su1a_184 d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia 1e-16
d1s3la_165 d.159.1.7 (A:) Putative phosphodiesterase MJ0936 { 4e-16
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Cryptosporidium parvum [TaxId: 5807]

 Score =  183 bits (465), Expect = 8e-60
 Identities = 86/189 (45%), Positives = 125/189 (66%), Gaps = 9/189 (4%)

Query: 3   LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62
           LVL +GDL IP+ A +LP+ F+ +L   KI +++CTGN+C +E  + LK I  +++I+ G
Sbjct: 5   LVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNITKNVYIVSG 64

Query: 63  EYDEET---------RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILV 113
           + D             +PE   + IG+FK+GL HG+QV+PW D  SL   QR+LD DILV
Sbjct: 65  DLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILV 124

Query: 114 TGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEV 173
           TGHTH+   ++  G + +NPG+ATGAFS++T D  PSF+LM + G +VV+YVY+L DG+ 
Sbjct: 125 TGHTHKLRVFEKNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVLYVYDLRDGKT 184

Query: 174 KVDKIDFKK 182
            V   +F K
Sbjct: 185 NVAMSEFSK 193
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]} Length = 182 Back     information, alignment and structure
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]} Length = 173 Back     information, alignment and structure
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Length = 184 Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Length = 165 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
d1z2wa1182 Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus 100.0
d2a22a1193 Vacuolar protein sorting 29, VPS29 {Cryptosporidiu 100.0
d3ck2a1173 Uncharacterized protein SP1879 {Streptococcus pneu 100.0
d1s3la_165 Putative phosphodiesterase MJ0936 {Methanococcus j 99.97
d1su1a_184 Phosphodiesterase yfcE {Escherichia coli [TaxId: 5 99.95
d1nnwa_251 Hypothetical protein PF1291 {Archaeon Pyrococcus f 99.95
d2yvta1257 Uncharacterized protein Aq_1956 {Aquifex aeolicus 99.92
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus 99.91
d2hy1a1256 Rv0805 cyclic nucleotide phosphodiesterase {Mycoba 99.87
d3d03a1271 Glycerophosphodiesterase GpdQ {Enterobacter aeroge 99.87
d1ii7a_333 Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 99.82
d2nxfa1320 Uncharacterized C17orf48 homolog zgc:64213 {Zebraf 99.78
d1utea_302 Mammalian purple acid phosphatase {Pig (Sus scrofa 99.68
d1g5ba_219 lambda ser/thr protein phosphatase {Bacteriophage 99.64
d1xm7a_188 Hypothetical protein aq_1666 {Aquifex aeolicus [Ta 99.61
d2qfra2312 Plant purple acid phosphatase, catalytic domain {K 99.56
d1usha2337 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term 99.1
d1s95a_324 Serine/threonine protein phosphatase 5, PP5 {Human 98.79
d1auia_ 473 Protein phosphatase-2B (PP-2B, calcineurin A subun 98.68
d1jk7a_294 Protein phosphatase-1 (PP-1) {Human (Homo sapiens) 98.58
d3c5wc1288 Protein phosphatase 2A catalytic subunit alpha iso 98.51
d3c9fa2322 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term 98.39
d2z1aa2302 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term 98.21
d1t70a_255 Putative phosphatase DR1281 {Deinococcus radiodura 96.41
d1t71a_281 Hypothetical protein MPN349 {Mycoplasma pneumoniae 96.14
d2z06a1252 Hypothetical protein TTHA0625 {Thermus thermophilu 96.1
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-41  Score=240.88  Aligned_cols=181  Identities=65%  Similarity=1.153  Sum_probs=166.5

Q ss_pred             EEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEECCE
Q ss_conf             69999930899999999289998642699934999938999978999995529947994577433447897308998999
Q 029673            2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQF   81 (190)
Q Consensus         2 mri~~isD~H~~~~~~~~~~~~~~~~~~~~~D~ii~~GDl~~~~~~~~l~~l~~~~~~v~GNhD~~~~~p~~~~~~~~~~   81 (190)
                      |||+++||+|++.++.++.+.+.+++++.++|.|+|+||++++++++.|+++..++++|+||||....+|+...++.++.
T Consensus         1 MkI~viSD~H~~~~~~~l~~~~~~~~~~~~~D~Ii~~GDi~~~e~l~~l~~~~~~v~~V~GN~D~~~~~p~~~~~~~~g~   80 (182)
T d1z2wa1           1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQF   80 (182)
T ss_dssp             CEEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBSHHHHHHHHHHCSEEEECCCTTCCCTTSCSEEEEEETTE
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEECCC
T ss_conf             98999912588975014689999984535898899925765345689887528965999378676654223889998696


Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEE
Q ss_conf             99994057657799978999975007966999875467434896696998369976777788888998189999839969
Q 029673           82 KLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRV  161 (190)
Q Consensus        82 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ii~i~~~~~  161 (190)
                      +++++||+...++...+.+...++..++++++|||||.|...+.++++++||||+++|+.+...++.++|+++|++++++
T Consensus        81 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~divi~GHTH~p~~~~~~~~~~iNPGSv~~pr~~~~~~~~~syaild~~~~~v  160 (182)
T d1z2wa1          81 KIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTV  160 (182)
T ss_dssp             EEEEECSCCCCBTTCHHHHHHHHHHHSSSEEECCSSCCCEEEEETTEEEEECCCTTCCCCSSCSCCCCEEEEEEEETTEE
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEE
T ss_conf             99999688778877889999987625799799787676349998999999699888888888888777799999809999


Q ss_pred             EEEEEEEECCEEEEEEEEEEE
Q ss_conf             999999628917787999740
Q 029673          162 VVYVYELIDGEVKVDKIDFKK  182 (190)
Q Consensus       162 ~~~~~~i~~~~~~~~~~~~~~  182 (190)
                      ++.++++..+++++++++|.|
T Consensus       161 ~~~~~~l~~~~v~~~~~~~~~  181 (182)
T d1z2wa1         161 VTYVYQLIGDDVKVERIEYKK  181 (182)
T ss_dssp             EEEEEEEETTEEEEEEEEEEC
T ss_pred             EEEEEEECCCCEEEEEEEEEC
T ss_conf             999999429929999999975
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Back     information, alignment and structure
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]} Back     information, alignment and structure
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]} Back     information, alignment and structure
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure